Query psy2646
Match_columns 168
No_of_seqs 126 out of 1503
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 21:32:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.5E-33 8.6E-38 202.5 14.7 135 3-137 41-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 8.3E-28 2.8E-32 171.6 18.1 134 4-137 37-174 (206)
3 3cpj_B GTP-binding protein YPT 100.0 2E-27 6.8E-32 171.9 14.5 130 10-139 52-181 (223)
4 2bov_A RAla, RAS-related prote 99.9 6.8E-27 2.3E-31 166.4 15.8 129 11-139 53-182 (206)
5 2fu5_C RAS-related protein RAB 99.9 3.8E-26 1.3E-30 159.9 15.4 132 10-141 47-178 (183)
6 3tkl_A RAS-related protein RAB 99.9 1.8E-25 6.2E-30 157.9 18.3 131 10-140 55-185 (196)
7 2j0v_A RAC-like GTP-binding pr 99.9 1.3E-26 4.4E-31 166.1 12.2 135 4-139 38-185 (212)
8 2hup_A RAS-related protein RAB 99.9 1.1E-25 3.7E-30 160.5 15.9 134 4-137 58-196 (201)
9 2a5j_A RAS-related protein RAB 99.9 3.5E-25 1.2E-29 156.3 17.9 129 10-138 60-188 (191)
10 3t5g_A GTP-binding protein RHE 99.9 2.5E-25 8.7E-30 155.4 16.0 128 10-137 44-172 (181)
11 1zbd_A Rabphilin-3A; G protein 99.9 3.3E-25 1.1E-29 157.7 16.7 136 4-139 37-176 (203)
12 2bme_A RAB4A, RAS-related prot 99.9 3.2E-25 1.1E-29 155.4 15.8 134 10-143 49-182 (186)
13 2o52_A RAS-related protein RAB 99.9 5.6E-25 1.9E-29 156.6 16.9 131 10-140 64-194 (200)
14 2ew1_A RAS-related protein RAB 99.9 4.8E-25 1.6E-29 157.3 16.1 134 4-137 55-192 (201)
15 3q72_A GTP-binding protein RAD 99.9 7.1E-25 2.4E-29 150.9 16.4 126 10-135 39-165 (166)
16 2efe_B Small GTP-binding prote 99.9 7.3E-25 2.5E-29 152.8 16.5 126 10-135 51-176 (181)
17 2g6b_A RAS-related protein RAB 99.9 7.9E-25 2.7E-29 152.6 16.6 132 4-135 40-175 (180)
18 3kkq_A RAS-related protein M-R 99.9 1.3E-24 4.5E-29 152.0 17.5 125 10-134 56-182 (183)
19 1z0f_A RAB14, member RAS oncog 99.9 6.4E-25 2.2E-29 152.6 15.8 126 9-134 53-178 (179)
20 4dsu_A GTPase KRAS, isoform 2B 99.9 1.1E-24 3.7E-29 152.8 16.8 127 10-137 42-169 (189)
21 2gf9_A RAS-related protein RAB 99.9 1.5E-24 5.2E-29 152.7 17.5 133 4-136 51-187 (189)
22 3tw8_B RAS-related protein RAB 99.9 1.3E-24 4.4E-29 151.3 16.8 129 10-139 48-176 (181)
23 2gf0_A GTP-binding protein DI- 99.9 1.6E-25 5.4E-30 158.5 12.3 133 4-137 37-174 (199)
24 3dz8_A RAS-related protein RAB 99.9 1.8E-25 6.2E-30 157.8 12.4 129 9-137 61-189 (191)
25 1vg8_A RAS-related protein RAB 99.9 4.1E-25 1.4E-29 157.4 14.2 133 4-137 37-178 (207)
26 1z08_A RAS-related protein RAB 99.9 4.8E-25 1.6E-29 152.2 14.0 130 4-133 35-168 (170)
27 2nzj_A GTP-binding protein REM 99.9 1.8E-24 6.2E-29 149.9 16.6 131 7-137 39-172 (175)
28 3cph_A RAS-related protein SEC 99.9 3E-24 1E-28 153.5 18.2 132 10-142 59-190 (213)
29 2fn4_A P23, RAS-related protei 99.9 1.9E-24 6.6E-29 150.5 16.3 136 4-139 38-177 (181)
30 3q3j_B RHO-related GTP-binding 99.9 4.5E-25 1.5E-29 158.8 13.4 134 4-138 56-207 (214)
31 3q85_A GTP-binding protein REM 99.9 1.4E-24 4.7E-29 149.9 15.3 128 8-135 39-168 (169)
32 3cbq_A GTP-binding protein REM 99.9 1.9E-24 6.4E-29 153.4 16.3 125 10-134 62-188 (195)
33 1r2q_A RAS-related protein RAB 99.9 1.4E-24 4.7E-29 149.7 15.1 123 10-132 45-167 (170)
34 1g16_A RAS-related protein SEC 99.9 2.1E-24 7.1E-29 148.9 16.0 125 10-135 42-166 (170)
35 3oes_A GTPase rhebl1; small GT 99.9 4.4E-25 1.5E-29 157.1 12.8 135 4-138 53-191 (201)
36 3bc1_A RAS-related protein RAB 99.9 2.1E-24 7.3E-29 151.8 16.2 122 19-140 69-191 (195)
37 2oil_A CATX-8, RAS-related pro 99.9 2.6E-24 9.1E-29 151.9 16.3 128 10-137 64-191 (193)
38 2il1_A RAB12; G-protein, GDP, 99.9 1.6E-24 5.4E-29 153.2 14.4 126 10-135 65-191 (192)
39 1z0j_A RAB-22, RAS-related pro 99.9 4.6E-24 1.6E-28 147.1 16.0 123 10-132 45-167 (170)
40 1ek0_A Protein (GTP-binding pr 99.9 1.2E-24 4.1E-29 150.0 12.8 129 4-132 32-167 (170)
41 2g3y_A GTP-binding protein GEM 99.9 2.8E-24 9.6E-29 154.6 15.2 128 9-136 76-205 (211)
42 2fg5_A RAB-22B, RAS-related pr 99.9 1.5E-24 5.2E-29 153.2 13.6 131 4-134 52-186 (192)
43 3t1o_A Gliding protein MGLA; G 99.9 1.8E-24 6E-29 152.7 13.8 132 4-138 53-196 (198)
44 3c5c_A RAS-like protein 12; GD 99.9 1.7E-24 5.9E-29 152.5 13.6 130 4-134 50-186 (187)
45 4bas_A ADP-ribosylation factor 99.9 9.2E-25 3.1E-29 154.6 12.2 136 4-139 47-194 (199)
46 3reg_A RHO-like small GTPase; 99.9 5.2E-24 1.8E-28 150.6 15.7 132 4-136 52-190 (194)
47 2yc2_C IFT27, small RAB-relate 99.9 2.4E-24 8.1E-29 153.3 13.9 133 4-136 51-194 (208)
48 2q3h_A RAS homolog gene family 99.9 9E-24 3.1E-28 150.0 16.8 134 4-138 49-199 (201)
49 2hxs_A RAB-26, RAS-related pro 99.9 3.3E-24 1.1E-28 149.1 14.3 126 10-135 45-174 (178)
50 2p5s_A RAS and EF-hand domain 99.9 2E-24 6.8E-29 153.5 13.0 125 10-134 67-197 (199)
51 1z2a_A RAS-related protein RAB 99.9 5.5E-24 1.9E-28 146.5 14.9 130 4-134 34-167 (168)
52 2a9k_A RAS-related protein RAL 99.9 6.9E-24 2.4E-28 148.3 15.6 127 11-137 57-184 (187)
53 1u8z_A RAS-related protein RAL 99.9 3.7E-24 1.3E-28 147.1 13.9 124 11-134 43-167 (168)
54 3ihw_A Centg3; RAS, centaurin, 99.9 8.5E-24 2.9E-28 148.7 15.7 123 10-137 57-183 (184)
55 2y8e_A RAB-protein 6, GH09086P 99.9 4E-24 1.4E-28 148.6 13.6 130 4-133 43-176 (179)
56 1z06_A RAS-related protein RAB 99.9 9.2E-24 3.2E-28 148.7 15.5 124 10-133 59-187 (189)
57 2f7s_A C25KG, RAS-related prot 99.9 2.7E-24 9.4E-29 154.5 12.2 119 19-137 83-202 (217)
58 1kao_A RAP2A; GTP-binding prot 99.9 6.3E-24 2.2E-28 145.8 13.4 125 10-134 41-166 (167)
59 2atx_A Small GTP binding prote 99.9 3.2E-23 1.1E-27 146.4 17.3 129 4-133 47-192 (194)
60 1c1y_A RAS-related protein RAP 99.9 9.4E-24 3.2E-28 145.2 14.2 129 4-132 32-165 (167)
61 2iwr_A Centaurin gamma 1; ANK 99.9 2.4E-23 8.2E-28 145.0 16.3 128 5-137 36-172 (178)
62 1wms_A RAB-9, RAB9, RAS-relate 99.9 3E-23 1E-27 144.2 16.4 130 4-134 36-174 (177)
63 2atv_A RERG, RAS-like estrogen 99.9 1.4E-23 4.9E-28 148.6 15.0 133 4-137 57-194 (196)
64 1ky3_A GTP-binding protein YPT 99.9 2.6E-23 8.8E-28 144.9 15.6 127 10-136 47-180 (182)
65 1x3s_A RAS-related protein RAB 99.9 3.5E-23 1.2E-27 145.9 16.4 132 4-136 44-180 (195)
66 1r8s_A ADP-ribosylation factor 99.9 1.2E-24 3.9E-29 149.6 7.9 130 4-135 28-163 (164)
67 2gco_A H9, RHO-related GTP-bin 99.9 5.2E-23 1.8E-27 146.4 16.3 129 4-133 54-199 (201)
68 2j1l_A RHO-related GTP-binding 99.9 2.5E-23 8.5E-28 149.5 14.5 132 4-136 63-211 (214)
69 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.3E-23 7.9E-28 145.7 13.9 123 10-133 43-179 (186)
70 4djt_A GTP-binding nuclear pro 99.9 3.2E-23 1.1E-27 149.0 14.9 123 17-139 58-180 (218)
71 1m7b_A RND3/RHOE small GTP-bin 99.9 1.4E-23 4.9E-28 147.2 12.6 130 4-134 36-183 (184)
72 3con_A GTPase NRAS; structural 99.9 1.2E-22 4.1E-27 142.9 17.3 127 10-137 59-186 (190)
73 3clv_A RAB5 protein, putative; 99.9 1.4E-22 4.6E-27 143.5 17.7 114 20-136 93-206 (208)
74 1gwn_A RHO-related GTP-binding 99.9 1.9E-23 6.5E-28 149.4 13.3 130 4-134 57-204 (205)
75 2cjw_A GTP-binding protein GEM 99.9 1.3E-22 4.4E-27 143.6 17.1 128 9-136 45-174 (192)
76 2fv8_A H6, RHO-related GTP-bin 99.9 7.2E-23 2.5E-27 146.3 15.4 130 5-135 55-201 (207)
77 3l0i_B RAS-related protein RAB 99.9 5E-25 1.7E-29 156.6 3.8 126 9-134 71-196 (199)
78 2ce2_X GTPase HRAS; signaling 99.9 2E-22 6.8E-27 138.0 16.1 123 10-133 41-164 (166)
79 2erx_A GTP-binding protein DI- 99.9 1.6E-23 5.6E-28 144.5 10.5 129 4-132 32-165 (172)
80 1f6b_A SAR1; gtpases, N-termin 99.9 2.1E-23 7.3E-28 148.3 11.1 126 4-131 53-196 (198)
81 1cip_A Protein (guanine nucleo 99.9 2.9E-24 9.8E-29 165.0 7.1 135 2-136 175-346 (353)
82 1upt_A ARL1, ADP-ribosylation 99.9 1.2E-23 4.2E-28 145.2 9.5 129 4-134 35-169 (171)
83 3bwd_D RAC-like GTP-binding pr 99.9 2.8E-23 9.7E-28 144.9 10.4 120 13-133 49-180 (182)
84 1m2o_B GTP-binding protein SAR 99.9 6.2E-23 2.1E-27 144.9 12.0 126 4-131 51-189 (190)
85 4gzl_A RAS-related C3 botulinu 99.9 1.1E-22 3.6E-27 145.2 12.9 122 10-132 68-203 (204)
86 2b6h_A ADP-ribosylation factor 99.9 6.4E-24 2.2E-28 150.2 6.5 128 4-133 57-190 (192)
87 3gj0_A GTP-binding nuclear pro 99.9 8.9E-23 3.1E-27 147.1 12.5 127 8-137 52-178 (221)
88 2h57_A ADP-ribosylation factor 99.9 2.7E-22 9.1E-27 141.3 14.5 129 4-134 51-187 (190)
89 2x77_A ADP-ribosylation factor 99.9 1.7E-23 5.8E-28 147.2 8.0 130 4-135 50-185 (189)
90 1zj6_A ADP-ribosylation factor 99.9 1E-22 3.4E-27 143.1 10.9 130 4-135 44-179 (187)
91 1fzq_A ADP-ribosylation factor 99.9 2.1E-23 7.2E-28 146.2 7.4 130 4-135 44-179 (181)
92 3ohm_A Guanine nucleotide-bind 99.9 1.7E-23 5.7E-28 158.9 7.3 137 1-137 148-321 (327)
93 1zd9_A ADP-ribosylation factor 99.9 2.2E-23 7.4E-28 146.8 7.1 129 4-134 51-185 (188)
94 1ksh_A ARF-like protein 2; sma 99.9 3.5E-22 1.2E-26 140.1 13.1 131 3-135 45-181 (186)
95 2f9l_A RAB11B, member RAS onco 99.9 6.7E-21 2.3E-25 135.2 18.1 136 5-140 35-174 (199)
96 2h17_A ADP-ribosylation factor 99.9 3.4E-22 1.2E-26 139.8 10.5 126 4-131 49-180 (181)
97 1zcb_A G alpha I/13; GTP-bindi 99.9 6.8E-23 2.3E-27 157.9 7.5 136 2-137 183-356 (362)
98 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-22 3.6E-27 142.2 7.8 131 4-136 46-182 (183)
99 1azs_C GS-alpha; complex (lyas 99.9 2E-22 6.7E-27 156.7 8.2 135 2-136 199-387 (402)
100 3r7w_B Gtpase2, GTP-binding pr 99.9 4.2E-23 1.4E-27 156.2 4.2 129 3-134 30-174 (331)
101 2wkq_A NPH1-1, RAS-related C3 99.9 3.6E-21 1.2E-25 146.1 14.5 124 10-134 193-330 (332)
102 3llu_A RAS-related GTP-binding 99.9 1.2E-21 4.1E-26 138.8 10.9 114 17-132 66-195 (196)
103 3lvq_E ARF-GAP with SH3 domain 99.9 2.9E-22 9.8E-27 160.4 8.3 136 3-140 349-490 (497)
104 2zej_A Dardarin, leucine-rich 99.9 4.8E-22 1.6E-26 139.6 8.0 131 4-135 33-179 (184)
105 2xtz_A Guanine nucleotide-bind 99.9 4.8E-22 1.7E-26 152.6 8.6 134 4-137 161-348 (354)
106 3o47_A ADP-ribosylation factor 99.9 3.6E-22 1.2E-26 152.4 6.4 128 5-134 194-327 (329)
107 4fid_A G protein alpha subunit 99.9 3.8E-22 1.3E-26 152.0 5.7 133 2-134 143-328 (340)
108 3th5_A RAS-related C3 botulinu 99.8 5.7E-23 1.9E-27 146.3 0.0 121 11-132 69-203 (204)
109 1oix_A RAS-related protein RAB 99.8 2.3E-19 7.9E-24 126.7 16.0 129 4-132 58-190 (191)
110 3r7w_A Gtpase1, GTP-binding pr 99.8 2.3E-20 7.9E-25 141.1 10.6 128 4-132 35-179 (307)
111 3c5h_A Glucocorticoid receptor 99.8 1.1E-20 3.9E-25 139.3 8.3 117 15-133 90-254 (255)
112 2fh5_B SR-beta, signal recogni 99.8 6.2E-20 2.1E-24 131.4 6.8 119 13-131 46-213 (214)
113 1u0l_A Probable GTPase ENGC; p 99.8 2.6E-19 9E-24 135.0 9.7 120 3-130 46-169 (301)
114 2wji_A Ferrous iron transport 99.8 1.4E-19 4.9E-24 124.7 7.3 107 19-132 49-163 (165)
115 2qu8_A Putative nucleolar GTP- 99.8 8.6E-19 3E-23 126.9 11.6 118 18-137 74-208 (228)
116 2lkc_A Translation initiation 99.8 3.9E-18 1.3E-22 118.3 12.6 119 10-137 47-174 (178)
117 3dpu_A RAB family protein; roc 99.8 2.1E-18 7.2E-23 139.2 9.8 116 17-136 95-210 (535)
118 2cxx_A Probable GTP-binding pr 99.7 1.6E-18 5.3E-23 121.5 6.7 114 21-137 45-187 (190)
119 3a1s_A Iron(II) transport prot 99.7 3.5E-18 1.2E-22 126.2 8.8 120 7-133 39-166 (258)
120 3iev_A GTP-binding protein ERA 99.7 1.1E-17 3.8E-22 126.4 11.3 123 8-133 46-181 (308)
121 2wjg_A FEOB, ferrous iron tran 99.7 2.1E-18 7E-23 120.8 6.3 118 11-135 45-170 (188)
122 1svi_A GTP-binding protein YSX 99.7 1.8E-17 6E-22 116.7 9.8 118 8-132 60-193 (195)
123 2dyk_A GTP-binding protein; GT 99.7 6E-18 2.1E-22 115.4 6.6 104 20-132 49-160 (161)
124 3b1v_A Ferrous iron uptake tra 99.7 3.2E-18 1.1E-22 127.3 5.6 118 7-132 37-162 (272)
125 2gj8_A MNME, tRNA modification 99.7 1.6E-18 5.3E-23 120.5 3.1 113 11-133 45-165 (172)
126 3iby_A Ferrous iron transport 99.7 4.1E-18 1.4E-22 125.7 4.5 116 9-131 37-164 (256)
127 4dcu_A GTP-binding protein ENG 99.7 4.7E-17 1.6E-21 129.0 8.6 115 20-138 243-373 (456)
128 3pqc_A Probable GTP-binding pr 99.7 1.8E-16 6.2E-21 111.2 10.3 108 21-134 69-194 (195)
129 3i8s_A Ferrous iron transport 99.7 2.2E-17 7.5E-22 122.9 4.6 120 7-133 37-168 (274)
130 3cb4_D GTP-binding protein LEP 99.7 3.7E-16 1.3E-20 127.1 12.1 112 16-133 67-181 (599)
131 4dhe_A Probable GTP-binding pr 99.7 1.2E-16 4.3E-21 114.7 8.1 125 7-135 65-212 (223)
132 2e87_A Hypothetical protein PH 99.7 9.3E-16 3.2E-20 118.1 12.4 127 7-136 201-338 (357)
133 3k53_A Ferrous iron transport 99.7 1.4E-16 4.7E-21 118.3 7.3 122 8-135 38-167 (271)
134 2hjg_A GTP-binding protein ENG 99.7 1.4E-16 4.8E-21 125.7 7.7 113 20-136 223-351 (436)
135 1nrj_B SR-beta, signal recogni 99.7 1.8E-17 6E-22 118.9 2.3 103 18-120 53-170 (218)
136 2ywe_A GTP-binding protein LEP 99.7 7.1E-16 2.4E-20 125.4 11.9 112 16-133 69-183 (600)
137 3gee_A MNME, tRNA modification 99.6 3.9E-16 1.3E-20 124.1 9.2 110 19-133 280-397 (476)
138 1lnz_A SPO0B-associated GTP-bi 99.6 4.3E-16 1.5E-20 119.2 7.7 111 20-134 206-330 (342)
139 3sjy_A Translation initiation 99.6 8E-16 2.7E-20 120.2 8.9 112 19-132 74-190 (403)
140 3qq5_A Small GTP-binding prote 99.6 1.3E-16 4.5E-21 125.1 4.4 107 21-135 84-197 (423)
141 2elf_A Protein translation elo 99.6 1.7E-15 6E-20 117.0 9.0 123 6-134 46-180 (370)
142 1xzp_A Probable tRNA modificat 99.6 6.3E-15 2.2E-19 117.3 11.9 113 12-135 285-406 (482)
143 2yv5_A YJEQ protein; hydrolase 99.6 3.4E-15 1.2E-19 112.5 9.5 111 16-129 46-164 (302)
144 3tr5_A RF-3, peptide chain rel 99.6 6.3E-15 2.2E-19 118.6 11.2 80 7-90 69-148 (528)
145 1wb1_A Translation elongation 99.6 2.7E-15 9.4E-20 119.6 8.9 109 18-133 71-188 (482)
146 3p26_A Elongation factor 1 alp 99.6 3.3E-15 1.1E-19 119.2 9.0 115 7-123 98-227 (483)
147 1wf3_A GTP-binding protein; GT 99.6 1.9E-15 6.5E-20 113.9 7.1 111 15-132 50-171 (301)
148 1s0u_A EIF-2-gamma, translatio 99.6 1.1E-14 3.8E-19 113.9 11.5 108 19-132 80-196 (408)
149 3j2k_7 ERF3, eukaryotic polype 99.6 9.4E-15 3.2E-19 115.3 10.9 118 6-126 81-217 (439)
150 1zun_B Sulfate adenylate trans 99.6 3.5E-15 1.2E-19 117.7 7.9 114 10-126 94-216 (434)
151 1mky_A Probable GTP-binding pr 99.6 5.9E-15 2E-19 116.5 8.9 106 20-135 49-167 (439)
152 2c78_A Elongation factor TU-A; 99.6 2.9E-15 9.9E-20 117.1 6.8 110 7-120 62-180 (405)
153 3l82_B F-box only protein 4; T 99.6 1.7E-15 5.9E-20 107.3 4.6 105 27-134 109-223 (227)
154 1d2e_A Elongation factor TU (E 99.6 6.8E-15 2.3E-19 114.7 8.1 121 7-131 53-192 (397)
155 1jny_A EF-1-alpha, elongation 99.6 3.2E-15 1.1E-19 117.9 6.0 120 6-126 70-205 (435)
156 1r5b_A Eukaryotic peptide chai 99.5 1E-15 3.5E-20 121.7 2.5 120 6-125 107-243 (467)
157 1kk1_A EIF2gamma; initiation o 99.5 2.5E-14 8.7E-19 111.9 9.8 108 19-132 82-198 (410)
158 1g7s_A Translation initiation 99.5 1.5E-13 5.2E-18 111.9 13.4 107 21-134 71-218 (594)
159 2hjg_A GTP-binding protein ENG 99.5 7.2E-15 2.5E-19 115.9 5.0 116 9-133 40-164 (436)
160 3izy_P Translation initiation 99.5 1.9E-15 6.4E-20 121.5 1.4 109 20-133 52-167 (537)
161 3geh_A MNME, tRNA modification 99.5 1.7E-14 5.8E-19 114.3 5.8 112 12-135 266-385 (462)
162 1ega_A Protein (GTP-binding pr 99.5 6E-14 2E-18 105.7 8.5 114 15-133 51-174 (301)
163 3avx_A Elongation factor TS, e 99.5 3.5E-14 1.2E-18 121.6 7.8 120 8-131 347-483 (1289)
164 1f60_A Elongation factor EEF1A 99.5 3.1E-14 1.1E-18 112.9 7.0 116 6-124 71-202 (458)
165 2qtf_A Protein HFLX, GTP-bindi 99.5 2.7E-13 9.4E-18 104.5 11.6 122 11-135 219-355 (364)
166 3l2o_B F-box only protein 4; s 99.5 3.7E-14 1.2E-18 105.0 6.3 107 27-135 194-309 (312)
167 3izq_1 HBS1P, elongation facto 99.5 2E-14 6.7E-19 117.5 4.2 116 7-124 232-362 (611)
168 1zo1_I IF2, translation initia 99.5 6.1E-15 2.1E-19 117.6 1.0 105 19-130 50-163 (501)
169 1mky_A Probable GTP-binding pr 99.5 2.2E-13 7.6E-18 107.5 9.5 119 12-136 222-357 (439)
170 2qag_A Septin-2, protein NEDD5 99.4 2.1E-14 7.2E-19 110.7 2.7 127 6-138 77-237 (361)
171 2xtp_A GTPase IMAP family memb 99.4 2.6E-13 9E-18 99.8 7.4 117 18-136 69-210 (260)
172 2dy1_A Elongation factor G; tr 99.4 1.2E-12 4.3E-17 108.0 10.0 79 7-89 61-139 (665)
173 4dcu_A GTP-binding protein ENG 99.4 1.7E-13 5.9E-18 108.6 4.3 117 8-133 59-184 (456)
174 3lxx_A GTPase IMAP family memb 99.4 3.1E-12 1.1E-16 93.0 10.2 115 18-134 76-214 (239)
175 1dar_A EF-G, elongation factor 99.4 1.5E-12 5E-17 108.0 9.3 82 5-90 62-143 (691)
176 3t5d_A Septin-7; GTP-binding p 99.4 2.8E-13 9.6E-18 100.6 4.5 113 16-132 61-202 (274)
177 2ged_A SR-beta, signal recogni 99.4 8.9E-13 3.1E-17 92.4 6.9 77 18-94 89-174 (193)
178 3mca_A HBS1, elongation factor 99.3 1.2E-13 4.1E-18 112.6 0.5 113 7-122 242-371 (592)
179 3lxw_A GTPase IMAP family memb 99.3 6.2E-12 2.1E-16 92.1 9.6 130 7-136 57-210 (247)
180 2aka_B Dynamin-1; fusion prote 99.3 3.2E-13 1.1E-17 101.1 2.7 111 20-133 125-252 (299)
181 2h5e_A Peptide chain release f 99.3 8.3E-12 2.8E-16 100.5 10.9 80 7-90 69-148 (529)
182 2rdo_7 EF-G, elongation factor 99.3 1.6E-11 5.5E-16 101.9 11.6 68 19-90 81-148 (704)
183 2xex_A Elongation factor G; GT 99.3 2.3E-11 7.9E-16 100.8 10.4 80 7-90 62-141 (693)
184 3t34_A Dynamin-related protein 99.3 1.9E-12 6.5E-17 99.7 3.4 113 19-133 135-260 (360)
185 2j69_A Bacterial dynamin-like 99.2 1.4E-11 4.9E-16 102.1 8.1 111 21-134 175-325 (695)
186 1udx_A The GTP-binding protein 99.2 8.4E-11 2.9E-15 92.0 11.8 115 20-137 205-328 (416)
187 1jwy_B Dynamin A GTPase domain 99.1 6.4E-11 2.2E-15 89.2 6.8 113 19-134 130-262 (315)
188 3def_A T7I23.11 protein; chlor 99.1 9.7E-11 3.3E-15 86.3 7.5 87 7-94 71-169 (262)
189 3vqt_A RF-3, peptide chain rel 99.1 3.4E-10 1.2E-14 91.5 9.9 80 7-90 87-166 (548)
190 1pui_A ENGB, probable GTP-bind 99.1 3.4E-10 1.2E-14 80.1 8.8 107 21-133 73-198 (210)
191 1yrb_A ATP(GTP)binding protein 99.1 2.1E-10 7E-15 84.2 7.5 109 20-133 109-256 (262)
192 2wsm_A Hydrogenase expression/ 99.1 1.2E-10 4E-15 83.3 5.6 106 19-135 108-215 (221)
193 3h2y_A GTPase family protein; 99.1 2.7E-10 9.2E-15 88.0 7.8 97 29-132 55-158 (368)
194 2qnr_A Septin-2, protein NEDD5 99.1 3.5E-11 1.2E-15 90.6 2.5 116 17-137 73-217 (301)
195 3p32_A Probable GTPase RV1496/ 99.1 7.5E-11 2.6E-15 90.6 3.6 106 18-135 170-285 (355)
196 1h65_A Chloroplast outer envel 99.0 9.2E-10 3.2E-14 81.4 7.7 85 10-95 77-173 (270)
197 1wxq_A GTP-binding protein; st 99.0 5.2E-10 1.8E-14 87.2 6.1 49 76-126 214-262 (397)
198 1n0u_A EF-2, elongation factor 99.0 4.6E-10 1.6E-14 94.9 6.0 70 16-89 94-163 (842)
199 3ec1_A YQEH GTPase; atnos1, at 98.9 8.2E-10 2.8E-14 85.3 5.3 98 28-132 56-160 (369)
200 3j25_A Tetracycline resistance 98.9 1E-09 3.5E-14 90.3 5.0 79 7-89 54-132 (638)
201 2x2e_A Dynamin-1; nitration, h 98.9 1E-10 3.5E-15 89.8 -1.2 109 19-130 129-254 (353)
202 2p67_A LAO/AO transport system 98.9 2E-09 6.9E-14 82.2 5.1 105 19-134 148-261 (341)
203 1puj_A YLQF, conserved hypothe 98.8 6.7E-09 2.3E-13 77.4 7.2 102 24-135 3-107 (282)
204 2qag_C Septin-7; cell cycle, c 98.8 3.2E-09 1.1E-13 83.1 4.8 107 20-131 88-224 (418)
205 1jal_A YCHF protein; nucleotid 98.7 3.9E-07 1.3E-11 70.0 12.7 43 75-117 198-240 (363)
206 4fn5_A EF-G 1, elongation fact 98.7 1.1E-07 3.9E-12 79.0 10.5 68 18-89 83-150 (709)
207 2www_A Methylmalonic aciduria 98.7 1.2E-07 4E-12 72.7 9.4 104 19-134 166-279 (349)
208 2qpt_A EH domain-containing pr 98.6 9.9E-09 3.4E-13 83.0 2.4 70 21-93 155-235 (550)
209 3zvr_A Dynamin-1; hydrolase, D 98.6 1.6E-08 5.3E-13 84.3 1.8 106 21-131 151-275 (772)
210 2dby_A GTP-binding protein; GD 98.4 1.1E-06 3.8E-11 67.7 9.3 51 76-126 201-254 (368)
211 1t9h_A YLOQ, probable GTPase E 98.4 1.5E-07 5E-12 70.9 3.9 90 34-126 77-169 (307)
212 2qm8_A GTPase/ATPase; G protei 98.4 7.7E-07 2.6E-11 67.8 7.6 104 19-133 147-260 (337)
213 3cnl_A YLQF, putative uncharac 98.4 1.8E-07 6E-12 69.0 3.2 93 27-130 4-97 (262)
214 2hf9_A Probable hydrogenase ni 98.3 4E-07 1.4E-11 65.0 4.1 59 76-134 164-224 (226)
215 2rcn_A Probable GTPase ENGC; Y 98.2 8.5E-06 2.9E-10 62.5 8.8 85 40-128 127-213 (358)
216 4a9a_A Ribosome-interacting GT 97.9 0.0002 6.8E-09 55.3 11.8 117 7-125 106-239 (376)
217 2j37_W Signal recognition part 97.3 0.00019 6.4E-09 57.5 4.6 103 18-131 182-310 (504)
218 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.029 1E-06 43.4 11.3 42 76-117 224-269 (392)
219 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00094 3.2E-08 51.8 2.7 37 20-56 86-129 (396)
220 3dm5_A SRP54, signal recogniti 96.1 0.021 7.3E-07 44.9 7.6 90 20-121 183-278 (443)
221 1j8m_F SRP54, signal recogniti 95.7 0.031 1.1E-06 41.6 6.9 92 19-123 180-280 (297)
222 4dzz_A Plasmid partitioning pr 95.7 0.031 1.1E-06 38.6 6.5 85 20-111 76-162 (206)
223 3ea0_A ATPase, para family; al 95.3 0.14 4.6E-06 36.3 8.8 87 19-113 118-204 (245)
224 3end_A Light-independent proto 95.2 0.15 5.1E-06 37.7 9.2 85 19-112 156-242 (307)
225 3cwq_A Para family chromosome 95.0 0.13 4.5E-06 35.9 7.9 86 19-111 67-153 (209)
226 3ec1_A YQEH GTPase; atnos1, at 94.7 0.0029 9.9E-08 48.6 -1.6 94 22-120 214-317 (369)
227 3kl4_A SRP54, signal recogniti 94.5 0.11 3.6E-06 40.8 6.8 91 19-121 179-277 (433)
228 2v3c_C SRP54, signal recogniti 94.3 0.17 6E-06 39.6 7.6 85 18-113 179-271 (432)
229 1wcv_1 SOJ, segregation protei 94.0 0.17 5.8E-06 36.3 6.7 69 18-89 110-182 (257)
230 3h2y_A GTPase family protein; 93.3 0.0027 9.3E-08 48.8 -4.2 89 22-115 213-311 (368)
231 3k9g_A PF-32 protein; ssgcid, 93.0 0.22 7.5E-06 35.9 5.9 65 19-87 144-208 (267)
232 2ph1_A Nucleotide-binding prot 92.6 0.15 5.2E-06 36.8 4.5 91 18-112 127-224 (262)
233 1hyq_A MIND, cell division inh 92.5 0.61 2.1E-05 33.3 7.7 84 19-111 110-193 (263)
234 1g3q_A MIND ATPase, cell divis 92.3 0.58 2E-05 32.8 7.3 67 19-90 111-177 (237)
235 3kjh_A CO dehydrogenase/acetyl 92.1 0.4 1.4E-05 33.8 6.2 65 18-87 130-194 (254)
236 3q9l_A Septum site-determining 90.8 0.34 1.2E-05 34.5 4.8 67 19-88 113-185 (260)
237 2oze_A ORF delta'; para, walke 90.0 0.52 1.8E-05 34.5 5.2 68 19-89 154-225 (298)
238 1tq4_A IIGP1, interferon-induc 89.1 3.4 0.00012 32.1 9.4 106 21-132 121-251 (413)
239 3bfv_A CAPA1, CAPB2, membrane 88.7 0.57 2E-05 34.1 4.6 66 19-89 191-257 (271)
240 3pg5_A Uncharacterized protein 88.4 1.3 4.4E-05 33.6 6.5 48 19-69 153-200 (361)
241 2afh_E Nitrogenase iron protei 86.6 5.6 0.00019 28.7 8.9 88 19-111 118-208 (289)
242 3la6_A Tyrosine-protein kinase 86.6 2.3 7.8E-05 31.2 6.7 68 19-90 201-268 (286)
243 1ls1_A Signal recognition part 85.7 2.5 8.5E-05 31.1 6.6 92 19-122 180-277 (295)
244 1vma_A Cell division protein F 84.7 4.4 0.00015 30.0 7.6 92 20-123 187-290 (306)
245 1zu4_A FTSY; GTPase, signal re 84.4 2.5 8.4E-05 31.6 6.1 92 19-123 191-295 (320)
246 2xxa_A Signal recognition part 84.3 7 0.00024 30.5 8.8 84 19-113 183-273 (433)
247 2xj4_A MIPZ; replication, cell 83.9 0.71 2.4E-05 33.7 2.9 35 19-55 103-137 (286)
248 3cio_A ETK, tyrosine-protein k 81.6 2.1 7.1E-05 31.6 4.7 66 19-89 213-279 (299)
249 1cp2_A CP2, nitrogenase iron p 81.5 12 0.0004 26.5 9.4 88 19-111 115-205 (269)
250 3ez9_A Para; DNA binding, wing 79.9 4 0.00014 31.3 5.9 67 18-87 246-321 (403)
251 2ffh_A Protein (FFH); SRP54, s 79.3 11 0.00036 29.5 8.1 86 19-114 180-271 (425)
252 2qag_B Septin-6, protein NEDD5 78.2 1.4 4.9E-05 34.4 2.9 42 75-116 175-218 (427)
253 3e70_C DPA, signal recognition 78.2 7.3 0.00025 29.2 6.8 91 21-123 213-309 (328)
254 1byi_A Dethiobiotin synthase; 78.1 13 0.00046 25.3 7.9 88 19-112 108-201 (224)
255 3szr_A Interferon-induced GTP- 77.3 2.2 7.5E-05 34.8 3.9 66 21-89 148-227 (608)
256 3sop_A Neuronal-specific septi 76.4 2.6 8.8E-05 30.6 3.7 66 42-112 110-178 (270)
257 4a9a_A Ribosome-interacting GT 71.2 9.7 0.00033 29.1 5.9 52 76-134 249-300 (376)
258 2yhs_A FTSY, cell division pro 69.1 18 0.0006 28.9 7.1 91 20-123 376-479 (503)
259 2px0_A Flagellar biosynthesis 66.7 9.7 0.00033 27.9 5.0 86 19-114 182-273 (296)
260 1bif_A 6-phosphofructo-2-kinas 64.5 5.4 0.00019 31.3 3.4 51 21-72 88-148 (469)
261 3do6_A Formate--tetrahydrofola 63.0 16 0.00054 29.2 5.6 57 75-133 359-417 (543)
262 1rj9_A FTSY, signal recognitio 60.0 48 0.0017 24.3 8.7 90 21-122 186-287 (304)
263 3pzx_A Formate--tetrahydrofola 57.3 7.3 0.00025 31.2 2.9 59 74-134 372-430 (557)
264 2woj_A ATPase GET3; tail-ancho 52.7 36 0.0012 25.5 6.1 41 43-87 234-275 (354)
265 3ez2_A Plasmid partition prote 51.9 20 0.00067 27.2 4.6 35 19-55 244-278 (398)
266 1ko7_A HPR kinase/phosphatase; 48.0 19 0.00065 26.8 3.8 51 74-131 78-128 (314)
267 2ale_A SNU13, NHP2/L7AE family 47.7 39 0.0013 21.7 4.8 50 76-135 75-124 (134)
268 2ark_A Flavodoxin; FMN, struct 44.5 66 0.0023 21.3 7.0 61 20-86 35-98 (188)
269 3ug7_A Arsenical pump-driving 42.9 1E+02 0.0035 22.9 9.6 85 44-133 237-333 (349)
270 3fkq_A NTRC-like two-domain pr 42.6 19 0.00065 27.2 3.1 50 19-71 259-308 (373)
271 4hs4_A Chromate reductase; tri 39.1 30 0.001 23.6 3.5 69 39-108 69-140 (199)
272 3k1y_A Oxidoreductase; structu 39.0 25 0.00085 23.9 3.0 46 40-85 82-127 (191)
273 2a5l_A Trp repressor binding p 37.9 71 0.0024 21.1 5.3 72 39-110 67-142 (200)
274 2zki_A 199AA long hypothetical 37.0 64 0.0022 21.4 4.9 73 39-111 66-142 (199)
275 2zay_A Response regulator rece 36.7 72 0.0025 19.5 6.4 78 43-136 52-130 (147)
276 3hyn_A Putative signal transdu 33.9 45 0.0015 22.8 3.5 46 36-85 72-118 (189)
277 2vzf_A NADH-dependent FMN redu 33.7 21 0.00072 24.1 2.0 70 40-111 66-136 (197)
278 3gfs_A FMN-dependent NADPH-azo 33.0 16 0.00054 24.1 1.2 71 40-111 60-130 (174)
279 3u7r_A NADPH-dependent FMN red 31.4 37 0.0013 23.0 2.9 49 38-86 62-114 (190)
280 3ha2_A NADPH-quinone reductase 30.7 1E+02 0.0035 20.5 5.0 63 22-85 31-101 (177)
281 3svl_A Protein YIEF; E. coli C 30.0 60 0.0021 21.9 3.8 70 39-109 68-140 (193)
282 3uc9_A Increased recombination 29.6 12 0.00042 26.6 0.2 17 44-60 103-119 (233)
283 3b6i_A Flavoprotein WRBA; flav 28.0 85 0.0029 20.7 4.3 72 39-111 64-139 (198)
284 1ydg_A Trp repressor binding p 27.2 92 0.0031 20.9 4.4 73 39-111 74-150 (211)
285 1s2d_A Purine trans deoxyribos 26.8 1.1E+02 0.0039 20.2 4.7 39 40-83 78-116 (167)
286 3lcm_A SMU.1420, putative oxid 25.7 67 0.0023 21.6 3.4 46 40-85 70-128 (196)
287 1sqs_A Conserved hypothetical 25.3 66 0.0023 22.3 3.5 70 40-111 76-149 (242)
288 1rtt_A Conserved hypothetical 24.9 34 0.0012 22.8 1.8 46 40-85 69-117 (193)
289 3fvw_A Putative NAD(P)H-depend 24.6 53 0.0018 22.1 2.7 68 39-108 63-140 (192)
290 2fz5_A Flavodoxin; alpha/beta 24.1 73 0.0025 19.5 3.2 68 40-111 43-112 (137)
291 2amj_A Modulator of drug activ 23.6 1.7E+02 0.0059 19.7 5.9 49 20-69 48-96 (204)
292 1rli_A Trp repressor binding p 23.4 65 0.0022 21.0 3.0 46 40-85 68-124 (184)
293 5nul_A Flavodoxin; electron tr 22.3 1.1E+02 0.0037 18.9 3.8 65 40-108 42-108 (138)
294 3io3_A DEHA2D07832P; chaperone 22.3 2.1E+02 0.0072 21.3 5.9 40 45-88 232-272 (348)
295 2xzm_U Ribosomal protein L7AE 22.2 59 0.002 20.5 2.4 12 76-87 67-78 (126)
296 1eiw_A Hypothetical protein MT 22.1 1.4E+02 0.0046 18.4 4.0 41 39-84 34-75 (111)
297 1uf3_A Hypothetical protein TT 22.1 1.8E+02 0.0061 19.3 5.3 62 22-88 9-75 (228)
298 3d0c_A Dihydrodipicolinate syn 21.3 1.9E+02 0.0064 21.2 5.3 55 42-104 105-159 (314)
299 3iqw_A Tail-anchored protein t 20.8 2.5E+02 0.0085 20.7 6.0 40 45-88 223-263 (334)
300 3zq6_A Putative arsenical pump 20.7 2.5E+02 0.0085 20.4 10.1 76 45-124 223-310 (324)
301 2m1z_A LMO0427 protein; homolo 20.6 1.6E+02 0.0053 18.0 4.1 34 19-54 35-68 (106)
302 3rl5_A Metallophosphoesterase 20.6 61 0.0021 23.8 2.5 60 21-88 62-122 (296)
303 1ag9_A Flavodoxin; electron tr 20.6 78 0.0027 20.7 2.9 46 40-85 42-88 (175)
304 2q9u_A A-type flavoprotein; fl 20.2 1.3E+02 0.0043 22.7 4.3 65 40-108 304-370 (414)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.5e-33 Score=202.48 Aligned_cols=135 Identities=32% Similarity=0.509 Sum_probs=116.1
Q ss_pred ccccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
.+.||++ .+.+.+++..+.++||||+|+++|..+++.|+++++++++|||++++++|+.+..|+..+.....++.|
T Consensus 41 ~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p 120 (216)
T 4dkx_A 41 TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120 (216)
T ss_dssp ---------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE
T ss_pred CcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe
Confidence 3567776 456677899999999999999999999999999999999999999999999999999999776667899
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++|||||+|+...+.++.+++.++++.++++|+++||++|.||+++|+.|++.+.....
T Consensus 121 iilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 121 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred EEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 99999999999888999999999999999999999999999999999999988875543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=8.3e-28 Score=171.64 Aligned_cols=134 Identities=59% Similarity=0.925 Sum_probs=119.1
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ ...+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.++..+..|+..+......+.|+
T Consensus 37 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 116 (206)
T 2bcg_Y 37 YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116 (206)
T ss_dssp CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred CCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 345554 4566778889999999999999999999999999999999999999999999999999987765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++|+||+|+...+.+..+++..++..++++++++||++|.|++++|.++.+.+.+...
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999998777788888888998899999999999999999999999999987644
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-27 Score=171.91 Aligned_cols=130 Identities=42% Similarity=0.655 Sum_probs=111.7
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.
T Consensus 52 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 52 TRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 45566788889999999999999999999999999999999999999999999999999877655579999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
..+.+..+++..++..++++++++||+++.|++++|+++.+.+.++....
T Consensus 132 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 132 HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181 (223)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC---
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 76678888888899889999999999999999999999999988655443
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=6.8e-27 Score=166.44 Aligned_cols=129 Identities=36% Similarity=0.549 Sum_probs=115.3
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~ 89 (168)
..+.+++..+.+.||||||++++..++..+++.+|++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.
T Consensus 53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 53 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 456678888999999999999999999999999999999999999999999999999987654 3479999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
..+.+..+++..++..++++++++||++|.|++++|+++.+.+..+....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~ 182 (206)
T 2bov_A 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 182 (206)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccccc
Confidence 77778888888899888999999999999999999999999998765443
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.94 E-value=3.8e-26 Score=159.90 Aligned_cols=132 Identities=44% Similarity=0.763 Sum_probs=104.4
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.
T Consensus 47 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 47 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 34566788889999999999999999999999999999999999999999999999999877655679999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEK 141 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~ 141 (168)
..+.+..+++..+++.++++++++||+++.|++++|.++.+.+.++..+..+
T Consensus 127 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~~~ 178 (183)
T 2fu5_C 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWK 178 (183)
T ss_dssp SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 7777888888899998999999999999999999999999999877665443
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=157.89 Aligned_cols=131 Identities=70% Similarity=1.051 Sum_probs=117.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.||||||++++..++..+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.
T Consensus 55 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 55 IRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 45566788889999999999999999999999999999999999999999999999999977766689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~ 140 (168)
..+.+...++..++..++++++++||+++.|++++|+++.+.+.++.....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA 185 (196)
T ss_dssp TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC----
T ss_pred cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 888888888889999999999999999999999999999999988766543
No 7
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=1.3e-26 Score=166.12 Aligned_cols=135 Identities=24% Similarity=0.446 Sum_probs=110.4
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||++ ...+.+++..+.+.||||||+++|..++..+++++|++|+|||++++++++.+. .|+..+... .++.|+
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 116 (212)
T 2j0v_A 38 YIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPI 116 (212)
T ss_dssp CCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCCE
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 445555 334567888899999999999999999999999999999999999999999986 798888665 347999
Q ss_pred EEEEecCCCCCCcc--------cCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 80 LLVGNKNDQTSKKA--------VDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 80 ivv~nK~Dl~~~~~--------v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
++|+||+|+...+. +..+++..++..++. +++++||++|.|++++|+++.+.+.+...+.
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp EEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC----
T ss_pred EEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999999866443 367788888888885 9999999999999999999999987654433
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=160.47 Aligned_cols=134 Identities=43% Similarity=0.679 Sum_probs=115.8
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+++.+..|+..+......+.|+
T Consensus 58 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pi 137 (201)
T 2hup_A 58 QGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137 (201)
T ss_dssp -------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred CCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 345544 4556778888999999999999999999999999999999999999999999999999987765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++|+||+|+...+.+..+++..+++.+++ +++++||+++.|++++|+++.+.+.++..
T Consensus 138 ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999987667888888899999998 99999999999999999999999887654
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=3.5e-25 Score=156.30 Aligned_cols=129 Identities=42% Similarity=0.710 Sum_probs=116.9
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 60 ARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 55677788899999999999999999999999999999999999999999999999999877655689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
+.+.+..+++..++..++++++++||+++.|++++|+++.+.+.++..+
T Consensus 140 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7667888888899998999999999999999999999999999876543
No 10
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.94 E-value=2.5e-25 Score=155.41 Aligned_cols=128 Identities=24% Similarity=0.347 Sum_probs=113.5
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.+|||||+++|..++..+++++|++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+
T Consensus 44 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 5566778999999999999999999999999999999999999999999999999999886553 347999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
...+.+..+++..+++.++++++++||+++.|++++|+++.+.+.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp TTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred hhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 8888888899999999999999999999999999999999998876554
No 11
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.94 E-value=3.3e-25 Score=157.66 Aligned_cols=136 Identities=39% Similarity=0.697 Sum_probs=119.9
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+
T Consensus 37 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 116 (203)
T 1zbd_A 37 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV 116 (203)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEE
T ss_pred cCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 445554 3456668889999999999999999999999999999999999999999999999999987765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|+++.+.+.++....
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 117 LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp EEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999877778888888899989999999999999999999999999998876544
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=3.2e-25 Score=155.41 Aligned_cols=134 Identities=40% Similarity=0.656 Sum_probs=117.6
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.++++.+.+.+|||||++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.
T Consensus 49 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 49 SKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 45566788889999999999999999999999999999999999999999999999998877655689999999999997
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~ 143 (168)
..+.+...++..++...+++++++||+++.|++++|+++.+.+.++........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~ 182 (186)
T 2bme_A 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDP 182 (186)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC---
T ss_pred cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCCCc
Confidence 766788888888999999999999999999999999999999988766554443
No 13
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.93 E-value=5.6e-25 Score=156.57 Aligned_cols=131 Identities=42% Similarity=0.687 Sum_probs=117.8
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 64 SRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred EEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 55666788889999999999999999999999999999999999999999999999999877655689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~ 140 (168)
..+.+...++..+++..+++++++||++|.|++++|+++.+.+.++.....
T Consensus 144 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 194 (200)
T 2o52_A 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194 (200)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTS
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 766788888888999999999999999999999999999999987765544
No 14
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=4.8e-25 Score=157.33 Aligned_cols=134 Identities=40% Similarity=0.658 Sum_probs=118.2
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+++.+..|+..+......+.|+
T Consensus 55 ~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi 134 (201)
T 2ew1_A 55 QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 134 (201)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred CCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 345554 3456678888999999999999999999999999999999999999999999999999987765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+++.+.+.++..
T Consensus 135 ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 135 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999998767788888888888889999999999999999999999999887643
No 15
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.93 E-value=7.1e-25 Score=150.93 Aligned_cols=126 Identities=23% Similarity=0.318 Sum_probs=99.4
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.+|||||++++..++..+++.+|++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+
T Consensus 39 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 118 (166)
T 3q72_A 39 DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118 (166)
T ss_dssp EEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTC
T ss_pred EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccc
Confidence 4566788999999999999999999999999999999999999999999999999999886643 457999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.+.+.+..+++..++..++++++++||++|.|++++|+++.+.+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 88788888888899999999999999999999999999999988765
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.93 E-value=7.3e-25 Score=152.85 Aligned_cols=126 Identities=35% Similarity=0.589 Sum_probs=113.0
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+.....++.|+++|+||+|+.
T Consensus 51 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 51 SQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 55666788899999999999999999999999999999999999999999999999999877655689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
..+.+..+++..++..++++++++||+++.|++++|+++.+.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 131 DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7777888888899988999999999999999999999998876543
No 17
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=7.9e-25 Score=152.56 Aligned_cols=132 Identities=39% Similarity=0.742 Sum_probs=108.3
Q ss_pred ccccccee----eeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTLQ----NKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~~----~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+.. .+.+++..+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+......+.|+
T Consensus 40 ~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 119 (180)
T 2g6b_A 40 FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL 119 (180)
T ss_dssp CCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred cCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 34555543 34678888999999999999999999999999999999999999999999999999987765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++|+||+|+...+.+..+++..+++.++++++++||+++.|++++|+++.+.+.++
T Consensus 120 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp EEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999987777888888889988899999999999999999999999888654
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.93 E-value=1.3e-24 Score=152.02 Aligned_cols=125 Identities=30% Similarity=0.519 Sum_probs=114.0
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.....+++..+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+
T Consensus 56 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 5667778999999999999999999999999999999999999999999999999999886543 457999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEecc-CCCCHHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAK-NGANVEQAFLTMATEIKK 134 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~-~~~~i~~i~~~l~~~~~~ 134 (168)
...+.+..+++..+++.++++++++||+ ++.|++++|+++.+.+.+
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 8877888899999999999999999999 999999999999988765
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=6.4e-25 Score=152.63 Aligned_cols=126 Identities=43% Similarity=0.712 Sum_probs=113.6
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
..+.+.+++..+.+.+|||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+
T Consensus 53 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 132 (179)
T 1z0f_A 53 GTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132 (179)
T ss_dssp EEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 35667778889999999999999999999999999999999999999999999999999987765568999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
...+.+..+++.++++.++++++++||+++.|++++|+++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 133 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 8767778888889999999999999999999999999999987753
No 20
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.93 E-value=1.1e-24 Score=152.84 Aligned_cols=127 Identities=34% Similarity=0.568 Sum_probs=110.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.+|||||++++..++..+++.+|++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+
T Consensus 42 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 121 (189)
T 4dsu_A 42 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121 (189)
T ss_dssp EEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred EEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence 4556678999999999999999999999999999999999999999999999999999986653 457999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
.. +.+..+.+..++..++++++++||++|.|++++|+++.+.+.....
T Consensus 122 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 122 PS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp SS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 74 4567788888999999999999999999999999999999886653
No 21
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=1.5e-24 Score=152.72 Aligned_cols=133 Identities=38% Similarity=0.669 Sum_probs=117.2
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ ...+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 130 (189)
T 2gf9_A 51 FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQV 130 (189)
T ss_dssp CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 345554 3455667888999999999999999999999999999999999999999999999999987765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
++|+||+|+...+.+..+++..+++.++++++++||+++.|++++|+++.+.+.++.
T Consensus 131 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 131 ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999876777778888899989999999999999999999999999887654
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=151.33 Aligned_cols=129 Identities=46% Similarity=0.804 Sum_probs=116.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+... ..+.|+++|+||+|+.
T Consensus 48 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 48 IRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCG
T ss_pred EEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCc
Confidence 455567888899999999999999999999999999999999999999999999999998765 4579999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
+.+.+...+...++..++++++++||++|.|++++|+++.+.+.+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 87778888888899999999999999999999999999999988766543
No 23
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.6e-25 Score=158.54 Aligned_cols=133 Identities=27% Similarity=0.376 Sum_probs=111.7
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCc
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CDNVN 78 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p 78 (168)
+.||++ ...+.+++..+.+.||||||++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+.|
T Consensus 37 ~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p 116 (199)
T 2gf0_A 37 YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP 116 (199)
T ss_dssp TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC
T ss_pred ccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 345544 3445568888999999999999999999999999999999999999999999988888775543 23689
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+++|+||+|+.. +.+...++..++..++++++++||++|.|++++|+++.+.+..+..
T Consensus 117 iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 117 VMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp EEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSCE
T ss_pred EEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhhc
Confidence 999999999975 4566778888888889999999999999999999999987765443
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-25 Score=157.81 Aligned_cols=129 Identities=40% Similarity=0.703 Sum_probs=116.7
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+
T Consensus 61 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 140 (191)
T 3dz8_A 61 KVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140 (191)
T ss_dssp EEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 35566677888999999999999999999999999999999999999999999999999997765568999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
.+.+.+..+++..++..++++++++||++|.|++++|+++.+.+.++..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 8777788888889999999999999999999999999999999887654
No 25
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.93 E-value=4.1e-25 Score=157.41 Aligned_cols=133 Identities=35% Similarity=0.540 Sum_probs=112.4
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----C
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----D 75 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~ 75 (168)
+.||++ ...+.+++..+.+.||||||++++..++..+++++|++|+|||++++.++..+..|+..+..... .
T Consensus 37 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 116 (207)
T 1vg8_A 37 YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116 (207)
T ss_dssp CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGG
T ss_pred CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCC
Confidence 345554 44556678889999999999999999999999999999999999999999999999998855432 4
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHH-hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYAD-HLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+.|+++|+||+|+.. +.+..+++..++. ..+++++++||++|.|++++|+++.+.+.++..
T Consensus 117 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 117 NFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp GSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 689999999999973 4566677777777 667899999999999999999999999887654
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=4.8e-25 Score=152.21 Aligned_cols=130 Identities=32% Similarity=0.583 Sum_probs=108.3
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+ ...+.+++..+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+......+.|+
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 114 (170)
T 1z08_A 35 HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL 114 (170)
T ss_dssp CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEE
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE
Confidence 345554 4556678888999999999999999999999999999999999999999999999999886654457999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++|+++.+.+.
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 115 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 999999999877778888888999999999999999999999999999998775
No 27
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=149.94 Aligned_cols=131 Identities=24% Similarity=0.296 Sum_probs=108.1
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchh--hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEE
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQER--FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVG 83 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~--~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~ 83 (168)
+...+.+.+++..+.+.+|||||++. +..++..+++.+|++++|||++++.+++.+..|+..+.... ..+.|+++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~ 118 (175)
T 2nzj_A 39 DVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118 (175)
T ss_dssp SEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEE
T ss_pred ceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEE
Confidence 33456777889999999999999987 56677888999999999999999999999999998886642 3479999999
Q ss_pred ecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
||+|+...+.+..+++..++..++++++++||++|.|++++|+++.+.+..+..
T Consensus 119 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp ECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred EChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 999998777788888888888889999999999999999999999999876544
No 28
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=3e-24 Score=153.54 Aligned_cols=132 Identities=44% Similarity=0.763 Sum_probs=115.2
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.||||||++++..++..+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+
T Consensus 59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl- 137 (213)
T 3cph_A 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM- 137 (213)
T ss_dssp EEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-
T ss_pred EEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-
Confidence 4556678888999999999999999999999999999999999999999999999999987765557999999999999
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKP 142 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~ 142 (168)
..+.+..+++..++..++++++++||+++.|++++|.++.+.+.++.......
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~ 190 (213)
T 3cph_A 138 ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLV 190 (213)
T ss_dssp SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTSCC
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 44556777888888888999999999999999999999999988776544433
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=1.9e-24 Score=150.46 Aligned_cols=136 Identities=28% Similarity=0.442 Sum_probs=117.1
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~pi 79 (168)
+.||.+. ....+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+... ...+.|+
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 117 (181)
T 2fn4_A 38 YDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117 (181)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE
T ss_pred cCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3445443 45667888899999999999999999999999999999999999999999999999888443 3457999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
++|+||+|+...+.+...++..++..++++++++||++|.|++++|+++.+.+.+.....
T Consensus 118 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~ 177 (181)
T 2fn4_A 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177 (181)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTTC-
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhccC
Confidence 999999999877778888888899888999999999999999999999999988765443
No 30
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.93 E-value=4.5e-25 Score=158.76 Aligned_cols=134 Identities=24% Similarity=0.445 Sum_probs=113.2
Q ss_pred ccccccee---eeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTLQ---NKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~~---~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~pi 79 (168)
+.||++.. .+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|.. +..|+..+... ..+.|+
T Consensus 56 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~pi 134 (214)
T 3q3j_B 56 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRV 134 (214)
T ss_dssp CCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEE
T ss_pred cCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 45666543 34667888999999999999999999999999999999999999999999 68999998776 357999
Q ss_pred EEEEecCCCCCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCC-HHHHHHHHHHHHHHHhcc
Q psy2646 80 LLVGNKNDQTSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGAN-VEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 80 ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~i~~~l~~~~~~~~~~ 138 (168)
++|+||+|+... +.+..+++..++..+++ +++++||++|.| ++++|+++.+.+..+...
T Consensus 135 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 135 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp EEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 999999999652 56888899999999998 999999999998 999999999988765443
No 31
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.93 E-value=1.4e-24 Score=149.87 Aligned_cols=128 Identities=19% Similarity=0.296 Sum_probs=108.6
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcc-cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEec
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRT-ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNK 85 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK 85 (168)
...+.+.+++..+.+.+|||||++++.. ++..+++++|++++|||++++++++.+..|+..+.... ..+.|+++|+||
T Consensus 39 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 39 TYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred eeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 3456667789999999999999998876 77888999999999999999999999999999986654 247999999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+|+.+.+.+..+++..+++.++++++++||+++.|++++|+++.+.+..+
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 99987778888999999999999999999999999999999999988764
No 32
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=153.44 Aligned_cols=125 Identities=19% Similarity=0.296 Sum_probs=111.4
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcc-cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRT-ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKND 87 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D 87 (168)
.+.+.+++..+.+.+|||+|++++.. ++..+++++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|
T Consensus 62 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 141 (195)
T 3cbq_A 62 ERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 141 (195)
T ss_dssp EEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechh
Confidence 45667889999999999999988764 77889999999999999999999999999999886653 24799999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+...+.+..+++..++..++++++++||+++.|++++|+++++.+..
T Consensus 142 l~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 142 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp CTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred ccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 98777788888889999889999999999999999999999988764
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.93 E-value=1.4e-24 Score=149.66 Aligned_cols=123 Identities=44% Similarity=0.727 Sum_probs=111.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+.....++.|+++|+||+|+.
T Consensus 45 ~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 45 TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 45667788899999999999999999999999999999999999999999999999999877655689999999999997
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..+.+..+++..++..++++++++||++|.|++++|+++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7667777888889988999999999999999999999998754
No 34
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=2.1e-24 Score=148.87 Aligned_cols=125 Identities=47% Similarity=0.798 Sum_probs=111.5
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+......+.|+++|+||+|+.
T Consensus 42 ~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 42 IKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 45566678889999999999999999999999999999999999999999999999999877655679999999999994
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.+.+..+++..+++.++++++++||++|.|++++|+++.+.+.++
T Consensus 122 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 122 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp -TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445677888888888899999999999999999999999988764
No 35
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=4.4e-25 Score=157.09 Aligned_cols=135 Identities=23% Similarity=0.350 Sum_probs=112.2
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||.+ .....+++..+.+.||||||++++..++..+++++|++|+|||++++++++.+..|+..+.... ..+.|+
T Consensus 53 ~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 132 (201)
T 3oes_A 53 YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV 132 (201)
T ss_dssp CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE
T ss_pred CCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 345555 4555667788999999999999999999999999999999999999999999999999985543 347899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
++|+||+|+...+.+...++..++..++++++++||++|.|++++|+++.+.+.+....
T Consensus 133 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 133 VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 99999999987778888889999999999999999999999999999999998776544
No 36
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.93 E-value=2.1e-24 Score=151.78 Aligned_cols=122 Identities=36% Similarity=0.700 Sum_probs=109.8
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.+.+.+|||||++++..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 78999999999999999999999999999999999999999999999999876543 57999999999999876677788
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCC
Q psy2646 98 VAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140 (168)
Q Consensus 98 ~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~ 140 (168)
++..++..++++++++||+++.|++++|+++.+.+.++..+..
T Consensus 149 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~ 191 (195)
T 3bc1_A 149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSV 191 (195)
T ss_dssp HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 8888998889999999999999999999999999987765443
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.6e-24 Score=151.86 Aligned_cols=128 Identities=39% Similarity=0.603 Sum_probs=114.8
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.||||||++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 64 TRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 45566788899999999999999999999999999999999999999999999999998876545679999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
..+.+...++..++..++++++++||+++.|++++|+++.+.+.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 766777788888998899999999999999999999999999887643
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=153.21 Aligned_cols=126 Identities=42% Similarity=0.767 Sum_probs=112.4
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 65 IKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 45566788889999999999999999999999999999999999999999999999988877655679999999999998
Q ss_pred CCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
..+.+..+++..+++.. +++++++||++|.|++++|+++.+.+.++
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 76778878888888875 78999999999999999999999888653
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=4.6e-24 Score=147.13 Aligned_cols=123 Identities=38% Similarity=0.651 Sum_probs=111.6
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.....+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+.....+..|+++|+||+|+.
T Consensus 45 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 45 TKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 45566788889999999999999999999999999999999999999999999999999977656689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..+.+..+++..+++.++++++++||+++.|++++|+++.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 7677778888889988999999999999999999999998765
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.2e-24 Score=149.96 Aligned_cols=129 Identities=35% Similarity=0.581 Sum_probs=113.0
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+ .....+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+......+.|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 111 (170)
T 1ek0_A 32 KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIII 111 (170)
T ss_dssp CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred CCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcE
Confidence 345554 4556778889999999999999999999999999999999999999999999999999987765568999
Q ss_pred EEEEecCCCCCC---cccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSK---KAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++++||+|+... +.+..+++..++..++++++++||+++.|++++|+++.+.+
T Consensus 112 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 112 ALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999998654 56777888888888899999999999999999999998654
No 41
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.8e-24 Score=154.57 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=110.7
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchh-hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQER-FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKN 86 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~ 86 (168)
..+.+.+++..+.+.+|||+|++. +..+...+++.+|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+
T Consensus 76 ~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 76 YERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred EEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 356677899999999999999886 55667788999999999999999999999999988875532 3479999999999
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
|+...+.+..+++..++..++++++++||++|.|++++|+++++.+..+.
T Consensus 156 DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99876778888888888888999999999999999999999999886554
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.5e-24 Score=153.24 Aligned_cols=131 Identities=35% Similarity=0.598 Sum_probs=115.0
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+ ...+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 131 (192)
T 2fg5_A 52 ISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVM 131 (192)
T ss_dssp CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 445555 4456667888999999999999999999999999999999999999999999999999997765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
++|+||+|+...+.+..+++..+++.++++++++||+++.|++++|+++.+.+.+
T Consensus 132 iiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 132 AIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999997766778888889999999999999999999999999999987643
No 43
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.92 E-value=1.8e-24 Score=152.68 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=111.0
Q ss_pred cccccceeee-----eeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHh
Q psy2646 4 LLPYQTLQNK-----KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCT------DQETFNNLKQWLEEIDRY 72 (168)
Q Consensus 4 ~~~t~~~~~~-----~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~ 72 (168)
+.||++.... .+++..+.+++|||||+++|..++..+++++|++|+|||++ +.+++..+..|+..+..
T Consensus 53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~- 131 (198)
T 3t1o_A 53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL- 131 (198)
T ss_dssp SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-
Confidence 3456654433 55678899999999999999999999999999999999999 55677788888877632
Q ss_pred cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 73 ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 73 ~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
...+.|+++|+||+|+... +..+++..+++.+++ +++++||++|.|++++|+++.+.+.++..+
T Consensus 132 ~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 132 TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 2457999999999999764 677888899999998 999999999999999999999999887654
No 44
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=152.52 Aligned_cols=130 Identities=23% Similarity=0.315 Sum_probs=110.2
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCC
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA---CDNV 77 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~ 77 (168)
+.||++. ..+.+++..+.++||||||+++|..+ ..+++++|++++|||++++++|+.+..|+..+.... ..+.
T Consensus 50 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 128 (187)
T 3c5c_A 50 YDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSI 128 (187)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 4566653 45667889999999999999988875 679999999999999999999999999999986652 2579
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEec-cCCCCHHHHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSA-KNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa-~~~~~i~~i~~~l~~~~~~ 134 (168)
|+++|+||+|+...+.+..+++..+++.++++++++|| +++.|++++|+++++.+.+
T Consensus 129 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 129 PALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 99999999999877778888899999999999999999 8999999999999988753
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=9.2e-25 Score=154.61 Aligned_cols=136 Identities=17% Similarity=0.264 Sum_probs=109.6
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--------C
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--------D 75 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~ 75 (168)
+.||++.....+++..+.+.||||||++++..++..+++++|++|+|||++++++|..+..|+..+..... .
T Consensus 47 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (199)
T 4bas_A 47 ITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGG 126 (199)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSC
T ss_pred cccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccC
Confidence 57888888888888889999999999999999999999999999999999999999999998888744311 2
Q ss_pred CCcEEEEEecCCCCCCcccC---HHHHHH-HHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 76 NVNKLLVGNKNDQTSKKAVD---YQVAKE-YADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~---~~~~~~-~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
+.|+++|+||+|+....... ...... +++..+++++++||+++.|++++|++|.+.+.++..+.
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 194 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGKA 194 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence 78999999999997653211 111111 12446789999999999999999999999998775443
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.92 E-value=5.2e-24 Score=150.55 Aligned_cols=132 Identities=22% Similarity=0.405 Sum_probs=114.2
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pi 79 (168)
+.||.+. ..+.+++..+.+.+|||||+++|..++..+++++|++|+|||++++.++..+ ..|+..+... ..+.|+
T Consensus 52 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ 130 (194)
T 3reg_A 52 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKT 130 (194)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEE
T ss_pred cCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 4555553 3456788999999999999999999999999999999999999999999997 6788888655 457999
Q ss_pred EEEEecCCCCC--CcccCHHHHHHHHHhcCCC-EEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 80 LLVGNKNDQTS--KKAVDYQVAKEYADHLKIP-FLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 80 ivv~nK~Dl~~--~~~v~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
++|+||+|+.. .+.+..+++..+++.++++ ++++||++|.|++++|+++.+.+..+.
T Consensus 131 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 131 VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp EEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred EEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999975 3567888899999999987 999999999999999999999887554
No 47
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.92 E-value=2.4e-24 Score=153.34 Aligned_cols=133 Identities=24% Similarity=0.427 Sum_probs=103.4
Q ss_pred cccccc----eeeeeeCCe--EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---
Q psy2646 4 LLPYQT----LQNKKEERT--RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--- 74 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~--~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--- 74 (168)
+.||.+ ...+.+++. .+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+.....
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 130 (208)
T 2yc2_C 51 YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRE 130 (208)
T ss_dssp ----------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTT
T ss_pred CCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccc
Confidence 345554 455666776 89999999999999999999999999999999999999999999999999977654
Q ss_pred CCCcEEEEEecCCCCC-CcccCHHHHHHHHHhcCCCEEEEeccC-CCCHHHHHHHHHHHHHHHh
Q psy2646 75 DNVNKLLVGNKNDQTS-KKAVDYQVAKEYADHLKIPFLETSAKN-GANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSa~~-~~~i~~i~~~l~~~~~~~~ 136 (168)
.+.|+++|+||+|+.. .+.+..+++..+++.++++++++||++ +.|++++|+++.+.+.+..
T Consensus 131 ~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp SCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 5799999999999987 677888889999999999999999999 9999999999999887654
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.92 E-value=9e-24 Score=150.00 Aligned_cols=134 Identities=22% Similarity=0.367 Sum_probs=113.2
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||.+ ...+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.++..+. .|+..+... ..+.|+
T Consensus 49 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ 127 (201)
T 2q3h_A 49 YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPI 127 (201)
T ss_dssp --CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CSSSCE
T ss_pred CCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 345554 334666888899999999999999999999999999999999999999999997 798888765 347999
Q ss_pred EEEEecCCCCC------------CcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 80 LLVGNKNDQTS------------KKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 80 ivv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
++|+||+|+.. .+.+..+++..+++.++. +++++||+++.|++++|+++.+.+.+...+
T Consensus 128 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 128 ILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999864 245677888888888886 999999999999999999999998876543
No 49
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=3.3e-24 Score=149.11 Aligned_cols=126 Identities=26% Similarity=0.394 Sum_probs=108.5
Q ss_pred eeeeeeCC-eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEec
Q psy2646 10 LQNKKEER-TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--DNVN-KLLVGNK 85 (168)
Q Consensus 10 ~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iivv~nK 85 (168)
.+.+.+++ ..+.+++|||||++++..++..+++++|++++|||++++++++.+..|+..+..... ...| +++|+||
T Consensus 45 ~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK 124 (178)
T 2hxs_A 45 LRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK 124 (178)
T ss_dssp EEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence 44555665 678999999999999999999999999999999999999999999999988865421 2345 8999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+|+...+.+..+++..+++.++++++++||++|.|++++|+++.+.+.+.
T Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 125 IDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp GGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred cccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99987667888888889988899999999999999999999999887543
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=153.46 Aligned_cols=125 Identities=40% Similarity=0.685 Sum_probs=109.9
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.||||||++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 67 MKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 56677889999999999999999999999999999999999999999999999999998876655579999999999985
Q ss_pred ------CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 90 ------SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 90 ------~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
..+.+..+++..++..++++++++||++|.|++++|.++.+.+.+
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 345677788888998889999999999999999999999988753
No 51
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=5.5e-24 Score=146.47 Aligned_cols=130 Identities=30% Similarity=0.498 Sum_probs=114.2
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ ...+.+++..+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+.... .+.|+
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~pi 112 (168)
T 1z2a_A 34 YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPT 112 (168)
T ss_dssp SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCE
T ss_pred CCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE
Confidence 345544 4556678888999999999999999999999999999999999999999999999999886653 57899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
++|+||+|+.+.+.+..+++..+++.++++++++||+++.|++++|+++.+.+.+
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 113 ALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred EEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 9999999998766777788888998899999999999999999999999988753
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=6.9e-24 Score=148.35 Aligned_cols=127 Identities=35% Similarity=0.542 Sum_probs=113.7
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~ 89 (168)
..+.+++..+.+.||||||++++..++..+++.+|++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.
T Consensus 57 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 57 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 445678888999999999999999999999999999999999999999999999999986654 3479999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
..+.+..+++..+++.++++++++||+++.|++++|+++.+.+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 766778888888999999999999999999999999999999887654
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=3.7e-24 Score=147.06 Aligned_cols=124 Identities=36% Similarity=0.554 Sum_probs=108.3
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~ 89 (168)
..+.+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.
T Consensus 43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 43 KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 345678888999999999999999999999999999999999999999999999999986654 3479999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+.+.+..+++..+++.++++++++||+++.|++++|+++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 766788888888998889999999999999999999999988753
No 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=8.5e-24 Score=148.72 Aligned_cols=123 Identities=20% Similarity=0.367 Sum_probs=107.7
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.+.+.+++..+.++||||+|+++|. +++++|++++|||++++.+|+.+..|+..+.... ..+.|+++++||+|+
T Consensus 57 ~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 57 KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3467778999999999999998876 8899999999999999999999999999986653 247899999999999
Q ss_pred C--CCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 89 T--SKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 89 ~--~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
. ..+.+..+++..++..++ ++++++||++|.|++++|+++.+.+.++..
T Consensus 132 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 132 SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp BTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred ccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4 456788888999999887 899999999999999999999999887643
No 55
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=4e-24 Score=148.57 Aligned_cols=130 Identities=34% Similarity=0.548 Sum_probs=113.9
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ ...+.+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+......+.|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 122 (179)
T 2y8e_A 43 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVII 122 (179)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEE
T ss_pred CCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 345554 3455678888999999999999999999999999999999999999999999999999886665567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++|+||+|+...+.+...++..++..++++++++||+++.|++++|+++.+.+.
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 123 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred EEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999877778888888888888999999999999999999999987653
No 56
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=9.2e-24 Score=148.69 Aligned_cols=124 Identities=40% Similarity=0.706 Sum_probs=108.8
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhc-ccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKND 87 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D 87 (168)
...+.+++..+.+.||||||++++. .++..+++++|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|
T Consensus 59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 59 ERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp EEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred EEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4556678888999999999999998 889999999999999999999999999999999987664 45799999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCC---CCHHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNG---ANVEQAFLTMATEIK 133 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~---~~i~~i~~~l~~~~~ 133 (168)
+...+.+..+++..++..++++++++||+++ .|++++|.++.+.+.
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred ccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 9877778888888999999999999999999 999999999988764
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=2.7e-24 Score=154.47 Aligned_cols=119 Identities=39% Similarity=0.740 Sum_probs=107.3
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.+.+.||||||+++|..++..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+...
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 78999999999999999999999999999999999999999999999888754432 57999999999999876678888
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 98 VAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 98 ~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++..+++.++++++++||+++.|++++|+++.+.+.++..
T Consensus 163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 8889999999999999999999999999999999887644
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.91 E-value=6.3e-24 Score=145.79 Aligned_cols=125 Identities=29% Similarity=0.506 Sum_probs=112.0
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.+.+.+++..+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+
T Consensus 41 ~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 41 RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 5666778889999999999999999999999999999999999999999999999998886653 357999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
...+.+...++..++..++++++++||++|.|++++|+++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp GGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 8767788888888998889999999999999999999999988754
No 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3.2e-23 Score=146.37 Aligned_cols=129 Identities=22% Similarity=0.380 Sum_probs=111.3
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||.+ ...+.+++..+.+.+|||||+++|..++..+++++|++|+|||++++++|..+. .|+..+... .++.|+
T Consensus 47 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 125 (194)
T 2atx_A 47 YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPF 125 (194)
T ss_dssp CCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCE
T ss_pred CCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 345554 345566788899999999999999999999999999999999999999999987 788888765 347999
Q ss_pred EEEEecCCCCCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++|+||+|+... +.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 126 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 126 LLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 999999999753 35777888889988887 9999999999999999999998765
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.91 E-value=9.4e-24 Score=145.17 Aligned_cols=129 Identities=31% Similarity=0.484 Sum_probs=111.9
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||.+. +...+++..+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+.|+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 111 (167)
T 1c1y_A 32 YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111 (167)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCE
T ss_pred CCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcE
Confidence 3455543 344567888999999999999999999999999999999999999999999999998886643 457999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++|+||+|+.+.+.+..+++..+++.+ +++++++||++|.|++++|+++.+.+
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999999877777888888888887 78999999999999999999999876
No 61
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.91 E-value=2.4e-23 Score=144.97 Aligned_cols=128 Identities=18% Similarity=0.308 Sum_probs=107.0
Q ss_pred ccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCc
Q psy2646 5 LPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA---CDNVN 78 (168)
Q Consensus 5 ~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p 78 (168)
.||++ .+.+.+++..+.+++|||||+++ ..+++++|++|+|||++++++++.+..|+..+.... ..+.|
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p 110 (178)
T 2iwr_A 36 EKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA 110 (178)
T ss_dssp SSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE
T ss_pred CCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 45543 45667788999999999999986 458899999999999999999999999877665442 25789
Q ss_pred EEEEEecCCCC--CCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 79 KLLVGNKNDQT--SKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 79 iivv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+++|+||+|+. ..+.+..+++..++..+ +++++++||++|.|++++|+++.+.+.+...
T Consensus 111 iilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 111 LALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp EEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 99999999994 45567888888888776 6899999999999999999999999887544
No 62
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=3e-23 Score=144.16 Aligned_cols=130 Identities=30% Similarity=0.545 Sum_probs=110.2
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----C
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----D 75 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~ 75 (168)
+.||.+ ...+.+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+..... .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 115 (177)
T 1wms_A 36 LFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115 (177)
T ss_dssp ---CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTT
T ss_pred CCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccC
Confidence 345554 44566788889999999999999999999999999999999999999999999999998865532 5
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHH-hcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYAD-HLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++++|+++.+.+.+
T Consensus 116 ~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 116 SFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 78999999999997 44567778888887 567899999999999999999999988764
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.4e-23 Score=148.58 Aligned_cols=133 Identities=28% Similarity=0.398 Sum_probs=115.4
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||.+. ..+.+++..+.+.+|||||+++ ..++..+++++|++++|||++++++++.+..|+..+.... ..+.|+
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi 135 (196)
T 2atv_A 57 YDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135 (196)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE
T ss_pred cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence 3455543 3466788899999999999988 7778899999999999999999999999999999886653 357999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCC-CHHHHHHHHHHHHHHHhc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA-NVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~i~~~l~~~~~~~~~ 137 (168)
++|+||+|+...+.+..+++..+++.++++++++||+++. |++++|+++.+.+.++..
T Consensus 136 ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 136 ILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM 194 (196)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhcc
Confidence 9999999998767788888889998889999999999999 999999999999887654
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=2.6e-23 Score=144.86 Aligned_cols=127 Identities=35% Similarity=0.562 Sum_probs=98.9
Q ss_pred eeeeeeC-CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEe
Q psy2646 10 LQNKKEE-RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----DNVNKLLVGN 84 (168)
Q Consensus 10 ~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~n 84 (168)
...+.++ +..+.+.+|||||++++..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+|
T Consensus 47 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 126 (182)
T 1ky3_A 47 TKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGN 126 (182)
T ss_dssp EEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred EEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence 3445555 5568999999999999999999999999999999999999999999999998865532 5789999999
Q ss_pred cCCCCC-CcccCHHHHHHHHH-hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 85 KNDQTS-KKAVDYQVAKEYAD-HLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 85 K~Dl~~-~~~v~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
|+|+.. .+.+..+++..+++ ..+++++++||++|.|++++|+++.+.+.++.
T Consensus 127 K~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 127 KIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp CTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 999954 34567778888887 45789999999999999999999999887654
No 65
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3.5e-23 Score=145.87 Aligned_cols=132 Identities=39% Similarity=0.683 Sum_probs=114.3
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCc
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVN 78 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 78 (168)
+.||.+ .+.+.+++..+.+.||||||++++..++..+++++|++|+|||++++.++..+..|+..+.... ..+.|
T Consensus 44 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 123 (195)
T 1x3s_A 44 LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV 123 (195)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE
T ss_pred CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 345544 4556778899999999999999999999999999999999999999999999999999886643 34789
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+++|+||+|+.. +.+..+++..++..++++++++||+++.|++++|+++.+.+.+..
T Consensus 124 ~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 124 NMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp EEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred EEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999954 456778888899889999999999999999999999999887543
No 66
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=1.2e-24 Score=149.58 Aligned_cols=130 Identities=18% Similarity=0.323 Sum_probs=103.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||++.....++.+.+.+.+|||||++++..++..+++++|++++|||+++++++..+..|+..+... ...+.|+++|
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (164)
T 1r8s_A 28 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 107 (164)
T ss_dssp CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEE
Confidence 567888777677777789999999999999999999999999999999999999999999888887543 2357999999
Q ss_pred EecCCCCCCcccCHHHHHHH-----HHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEY-----ADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+.+.. ...+.... +...+++++++||++|.|++++|+++.+.+.++
T Consensus 108 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 108 ANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp EECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred EECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 9999997642 22222221 112346799999999999999999999887543
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.91 E-value=5.2e-23 Score=146.37 Aligned_cols=129 Identities=24% Similarity=0.479 Sum_probs=110.5
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pi 79 (168)
+.||.+. ..+.+++..+.+.||||||+++|..++..+++++|++++|||++++.++..+ ..|+..+... .++.|+
T Consensus 54 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 132 (201)
T 2gco_A 54 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPI 132 (201)
T ss_dssp CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCE
T ss_pred cCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 3455443 4466788889999999999999999999999999999999999999999998 6788877665 357999
Q ss_pred EEEEecCCCCCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++|+||+|+... +.+..+++..+++.++. +++++||++|.|++++|+++.+.+.
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 999999999764 45677788888888887 8999999999999999999998765
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=149.54 Aligned_cols=132 Identities=27% Similarity=0.504 Sum_probs=97.9
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||.+ ...+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+. .|+..+... ..+.|+
T Consensus 63 ~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 141 (214)
T 2j1l_A 63 YTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPI 141 (214)
T ss_dssp -CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH-CSSCCE
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 345544 344667889999999999999999999999999999999999999999999986 788888665 357999
Q ss_pred EEEEecCCCCCCc------------ccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 80 LLVGNKNDQTSKK------------AVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 80 ivv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
++|+||+|+.... .+..+++..+++.+++ +++++||++|.|++++|+++.+.+.+..
T Consensus 142 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp EEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred EEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999997542 5677788889988887 9999999999999999999999887643
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.91 E-value=2.3e-23 Score=145.68 Aligned_cols=123 Identities=22% Similarity=0.408 Sum_probs=107.9
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.+|||||+++|..++..+++++|++++|||++++.++..+. .|+..+... ..+.|+++|+||+|+
T Consensus 43 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 43 SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDL 121 (186)
T ss_dssp EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHH
T ss_pred EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh-CCCCCEEEEeEcccc
Confidence 345667899999999999999999999999999999999999999999999987 688888665 347999999999998
Q ss_pred CCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 89 TSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 89 ~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
... +.+..+++..+++.++. +++++||++|.|++++|+++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 653 45677788888888886 9999999999999999999998875
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=3.2e-23 Score=148.98 Aligned_cols=123 Identities=27% Similarity=0.428 Sum_probs=107.2
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY 96 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~ 96 (168)
+..+.+.+|||||++++..++..++.++|++|+|||+++..+++.+..|+..+......+.|+++|+||+|+...+.+..
T Consensus 58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 137 (218)
T 4djt_A 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK 137 (218)
T ss_dssp SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH
T ss_pred CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence 44489999999999999999999999999999999999999999999999998776555689999999999987777888
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 97 QVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
..+..++...+++++++||++|.|++++|+++.+.+..+....
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccc
Confidence 8888888888999999999999999999999999987654433
No 71
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.91 E-value=1.4e-23 Score=147.20 Aligned_cols=130 Identities=23% Similarity=0.473 Sum_probs=111.0
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pi 79 (168)
+.||.+. ..+.+++..+.+.+|||||+++|..++..+++++|++|+|||++++++++.+ ..|+..+... .++.|+
T Consensus 36 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~pi 114 (184)
T 1m7b_A 36 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKM 114 (184)
T ss_dssp CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEE
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCE
Confidence 4566553 3456678889999999999999999999999999999999999999999998 6888888665 357999
Q ss_pred EEEEecCCCCCC------------cccCHHHHHHHHHhcC-CCEEEEecc-CCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSK------------KAVDYQVAKEYADHLK-IPFLETSAK-NGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSa~-~~~~i~~i~~~l~~~~~~ 134 (168)
++|+||+|+... +.++.+++..+++.++ ++++++||+ ++.|++++|+++.+.+.+
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 115 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999999642 4577788888998887 799999998 689999999999988764
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=1.2e-22 Score=142.87 Aligned_cols=127 Identities=35% Similarity=0.554 Sum_probs=101.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.||||||++++..++..+++.+|++++|||+++..++..+..|+..+.... ..+.|+++|+||+|+
T Consensus 59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 59 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 3456678888999999999999999999999999999999999999999999999999886653 247999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
.. +.+..+++.++++.++++++++||+++.|++++|+++.+.+.+.+.
T Consensus 139 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 139 PT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp SC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred Cc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 76 4567788888998899999999999999999999999999876543
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=1.4e-22 Score=143.45 Aligned_cols=114 Identities=39% Similarity=0.652 Sum_probs=103.3
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVA 99 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~ 99 (168)
+.+.||||||++++..++..+++.+|++|+|||++++.++..+..|+..+.... +.|+++|+||+| ...+.+..+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHHH
Confidence 899999999999999999999999999999999999999999999999987653 489999999999 45556777888
Q ss_pred HHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 100 KEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 100 ~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
..+++.++++++++||+++.|++++|+++.+.+.++.
T Consensus 170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999887664
No 74
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.91 E-value=1.9e-23 Score=149.43 Aligned_cols=130 Identities=23% Similarity=0.475 Sum_probs=111.0
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pi 79 (168)
+.||++. ..+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|..+ ..|+..+... ..+.|+
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~pi 135 (205)
T 1gwn_A 57 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKM 135 (205)
T ss_dssp CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEE
T ss_pred cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCE
Confidence 4566553 3445678889999999999999999999999999999999999999999998 7898888665 357999
Q ss_pred EEEEecCCCCC------------CcccCHHHHHHHHHhcC-CCEEEEecc-CCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTS------------KKAVDYQVAKEYADHLK-IPFLETSAK-NGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~vSa~-~~~~i~~i~~~l~~~~~~ 134 (168)
++|+||+|+.. .+.+..+++..+++.++ ++++++||+ ++.|++++|+++.+.+.+
T Consensus 136 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 136 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 99999999964 24577788888998887 799999999 689999999999988765
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=1.3e-22 Score=143.64 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=108.8
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchh-hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQER-FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKN 86 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~ 86 (168)
..+.+.+++..+.+.+|||+|++. +..++..+++.+|++++|||+++..+|+.+..|+..+.... ..+.|+++|+||+
T Consensus 45 ~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 45 YERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 346677899999999999999876 56677889999999999999999999999999988876542 3478999999999
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
|+...+.+...++..++..++++++++||++|.|++++|+++.+.+..+.
T Consensus 125 Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 99766677778888888888899999999999999999999999886554
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=7.2e-23 Score=146.27 Aligned_cols=130 Identities=25% Similarity=0.486 Sum_probs=108.4
Q ss_pred ccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEE
Q psy2646 5 LPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 5 ~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pii 80 (168)
.||.+. ..+.+++..+.+.||||||++++..++..+++++|++|+|||++++.++..+ ..|+..+... .++.|++
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pii 133 (207)
T 2fv8_A 55 VPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPII 133 (207)
T ss_dssp ----CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEE
T ss_pred CCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEE
Confidence 355443 3356788889999999999999999999999999999999999999999998 6788887665 3579999
Q ss_pred EEEecCCCCCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 81 vv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+|+||+|+... +.+..+++..++...+. +++++||++|.|++++|+++.+.+.+.
T Consensus 134 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 134 LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp EEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999654 34677788888888887 899999999999999999999987643
No 77
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.90 E-value=5e-25 Score=156.55 Aligned_cols=126 Identities=72% Similarity=1.081 Sum_probs=102.2
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+
T Consensus 71 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 71 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp EEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred EEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 35666778888999999999999999999999999999999999999999999999999987665557999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
...+.+...++..++..++++++++||+++.|++++|+++.+.+.+
T Consensus 151 ~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp C--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred CccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8766666666778888899999999999999999999999876643
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.90 E-value=2e-22 Score=138.01 Aligned_cols=123 Identities=34% Similarity=0.588 Sum_probs=108.8
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.+|||||++++..++..+++.+|++++|||++++.++..+..|+..+.... ..+.|+++++||+|+
T Consensus 41 ~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl 120 (166)
T 2ce2_X 41 RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120 (166)
T ss_dssp EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence 4456678888999999999999999999999999999999999999999999999999886653 347999999999998
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.. +.+...+...+++.++++++++||+++.|++++|+++.+.+.
T Consensus 121 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 121 AA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp SC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred hh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 76 456677888888888999999999999999999999998875
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=144.48 Aligned_cols=129 Identities=27% Similarity=0.380 Sum_probs=109.9
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCc
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CDNVN 78 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p 78 (168)
+.||.+ .....+++..+.+.+|||||++++..++..+++.+|++++|||++++.+++.+..|+..+.... ..+.|
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p 111 (172)
T 2erx_A 32 YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP 111 (172)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC
T ss_pred CCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 345544 3345567888999999999999999999999999999999999999999999999988886543 24789
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+++|+||+|+...+.+...++..++..++++++++||+++.|++++|+++.+.+
T Consensus 112 ii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 999999999987677777788888888899999999999999999999998765
No 80
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=2.1e-23 Score=148.25 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=97.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+..+++.+.+|||||++++..++..+++++|++++|||++++++|..+..|+..+.... ..+.|+++|
T Consensus 53 ~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 132 (198)
T 1f6b_A 53 HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 132 (198)
T ss_dssp --CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEE
T ss_pred cCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 4466655444443333889999999999999999999999999999999999999999999998885532 357999999
Q ss_pred EecCCCCCCcccCHHHHHHHHHh-----------------cCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADH-----------------LKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+||+|+.. .+..+++.++... .+++++++||++|.|++++|+++.+.
T Consensus 133 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 133 GNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999975 4566666666542 34679999999999999999999754
No 81
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=2.9e-24 Score=165.03 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=114.0
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHH
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD----------QETFNNLKQWLEEIDR 71 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~ 71 (168)
|...||+|.....++.+.+.+++|||+|+++++.+|..|+++++++|||||+++ .+++.+...|+..+..
T Consensus 175 ~~~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 175 RTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp TCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred cccCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 456789998887777667999999999999999999999999999999999998 5679999999998865
Q ss_pred hc-CCCCcEEEEEecCCCCCCc---------------ccCHHHHHHHHH-----------hcCCCEEEEeccCCCCHHHH
Q psy2646 72 YA-CDNVNKLLVGNKNDQTSKK---------------AVDYQVAKEYAD-----------HLKIPFLETSAKNGANVEQA 124 (168)
Q Consensus 72 ~~-~~~~piivv~nK~Dl~~~~---------------~v~~~~~~~~~~-----------~~~~~~~~vSa~~~~~i~~i 124 (168)
.. ..+.|++|++||+|+...+ .++.+++..++. ..++.++++||+++.|+.++
T Consensus 255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 42 3579999999999985322 256677777775 35678999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2646 125 FLTMATEIKKRV 136 (168)
Q Consensus 125 ~~~l~~~~~~~~ 136 (168)
|.++.+.+.+..
T Consensus 335 F~~v~~~i~~~~ 346 (353)
T 1cip_A 335 FDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.90 E-value=1.2e-23 Score=145.24 Aligned_cols=129 Identities=18% Similarity=0.241 Sum_probs=103.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+....+.+.+|||||++++..++..+++++|++++|||++++.++..+..|+..+.... ..+.|+++|
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 114 (171)
T 1upt_A 35 TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 114 (171)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred cCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEE
Confidence 5677776665555557889999999999999999999999999999999999999999988888775432 257999999
Q ss_pred EecCCCCCCcccCHHHHHH-----HHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKE-----YADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+||+|+..... ..+... .+...+++++++||+++.|++++|+++.+.+.+
T Consensus 115 ~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 115 ANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 99999976432 122222 122345689999999999999999999988754
No 83
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=2.8e-23 Score=144.86 Aligned_cols=120 Identities=25% Similarity=0.460 Sum_probs=98.2
Q ss_pred eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
+.+++..+.+++|||||+++|..++..+++++|++++|||++++.+++.+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 49 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 49 VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp CC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECHHHHTC
T ss_pred EEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEechhhhcC
Confidence 445677788999999999999999999999999999999999999999997 688888665 347999999999998654
Q ss_pred cc----------cCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 92 KA----------VDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 92 ~~----------v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+. +..+++..+++.++. +++++||++|.|++++|+++.+.+.
T Consensus 128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 43 467788888888886 9999999999999999999998763
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=6.2e-23 Score=144.92 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=102.0
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+..+++.+.+|||||++++..++..+++++|++++|||++++++|+.+..|+..+.... ..+.|+++|
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 130 (190)
T 1m2o_B 51 LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL 130 (190)
T ss_dssp CCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred cccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEE
Confidence 4566665544444334889999999999999999999999999999999999999999999998885432 357999999
Q ss_pred EecCCCCCCcccCHHHHHHHHHh------------cCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADH------------LKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+||+|+.. .++.+++.+.... .+++++++||++|.|++++|+++.+.
T Consensus 131 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 131 GNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 99999976 4555666555432 34689999999999999999999753
No 85
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.89 E-value=1.1e-22 Score=145.22 Aligned_cols=122 Identities=21% Similarity=0.390 Sum_probs=105.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.||||||+++|..++..+++++|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+
T Consensus 68 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl 146 (204)
T 4gzl_A 68 SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDL 146 (204)
T ss_dssp EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHH
T ss_pred EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhh
Confidence 344566888899999999999999999999999999999999999999999997 7888886663 67999999999998
Q ss_pred CCCcc------------cCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 89 TSKKA------------VDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 89 ~~~~~------------v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..... +..+++..+++.++. +++++||++|.|++++|+++.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 65432 677788888888885 599999999999999999998753
No 86
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.89 E-value=6.4e-24 Score=150.24 Aligned_cols=128 Identities=18% Similarity=0.292 Sum_probs=97.3
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....++.+.+.+.+|||||++++..++..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv 136 (192)
T 2b6h_A 57 TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVF 136 (192)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred cCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEE
Confidence 4577776666666667899999999999999999999999999999999999999999999988875432 347999999
Q ss_pred EecCCCCCCcccCHHHHHHH-----HHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEY-----ADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+||+|+.+.. ...+.... +...+++++++||++|.|++++|+++.+.+.
T Consensus 137 ~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 137 ANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred EECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 9999997642 22222211 1123467999999999999999999998764
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=8.9e-23 Score=147.08 Aligned_cols=127 Identities=28% Similarity=0.490 Sum_probs=109.4
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
.......+++..+.+.||||||++++..++..+++++|++|+|||++++.++..+..|+..+... ..+.|+++|+||+|
T Consensus 52 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~D 130 (221)
T 3gj0_A 52 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVD 130 (221)
T ss_dssp EEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTT
T ss_pred EEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCc
Confidence 34556667888999999999999999999999999999999999999999999999999999776 35799999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+.+.... .+...++...+++++++||++|.|++++|+++.+.+.....
T Consensus 131 l~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 131 IKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp SSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred ccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 9764332 24456777788999999999999999999999999876543
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=141.28 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=105.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC---DNVNKL 80 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~pii 80 (168)
+.||++.....+..+++.+.+|||||++++..++..+++++|++|+|||++++.++..+..|+..+..... .+.|++
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii 130 (190)
T 2h57_A 51 ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130 (190)
T ss_dssp CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE
T ss_pred cCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE
Confidence 56777766666655568999999999999999999999999999999999999999999999888865432 479999
Q ss_pred EEEecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+|+||+|+... ...++...+.. ..+++++++||+++.|++++|+++.+.+.+
T Consensus 131 lv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 131 FFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999753 34455555442 235789999999999999999999987654
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.89 E-value=1.7e-23 Score=147.24 Aligned_cols=130 Identities=17% Similarity=0.234 Sum_probs=103.0
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+..+.+.+.+|||||++++..++..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|
T Consensus 50 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 129 (189)
T 2x77_A 50 TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIF 129 (189)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEE
T ss_pred cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEE
Confidence 4577776555555556899999999999999999999999999999999999999999988888775432 347999999
Q ss_pred EecCCCCCCcccCHHHHHHH-----HHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEY-----ADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+.+... ..+.... +...+++++++||+++.|++++|+++.+.+.++
T Consensus 130 ~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 130 ANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 99999976422 1222221 123356899999999999999999999988654
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1e-22 Score=143.14 Aligned_cols=130 Identities=22% Similarity=0.271 Sum_probs=98.9
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+..+++.+.+|||||++++..++..+++++|++|+|||++++++++.+..|+..+.... ..+.|+++|
T Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 123 (187)
T 1zj6_A 44 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123 (187)
T ss_dssp EECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred CcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEE
Confidence 3566665444444445889999999999999999999999999999999999999999999998886542 357999999
Q ss_pred EecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+.+. ....+...... ..+++++++||++|.|++++|+++.+.+...
T Consensus 124 ~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 124 ANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp EECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred EECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 999999753 33344433332 3457899999999999999999999876443
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.89 E-value=2.1e-23 Score=146.21 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=100.0
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||.+.....+....+.+.+|||||++++..++..+++++|++++|||+++++++..+..|+..+... ...+.|++++
T Consensus 44 ~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 123 (181)
T 1fzq_A 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123 (181)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEE
T ss_pred ccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 457777554444434688999999999999999999999999999999999999999999888877432 2357899999
Q ss_pred EecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+.+... .++..... ...+++++++||++|.|++++|+++.+.+.++
T Consensus 124 ~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 124 ANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred EECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 99999976433 22222221 12346799999999999999999999876543
No 92
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=1.7e-23 Score=158.91 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=114.9
Q ss_pred CcccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q psy2646 1 MRLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCT----------DQETFNNLKQWLEEID 70 (168)
Q Consensus 1 ~~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~ 70 (168)
+|+..||+|.....++.+.+.+++|||+|+++++.+|..|+++++++|||||++ +.+++.+...|+..+.
T Consensus 148 lr~r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 148 LRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp TTCCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred hcccCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 366889999999999888899999999999999999999999999999999654 6678888888888886
Q ss_pred Hhc-CCCCcEEEEEecCCCCCCc----------------ccCHHHHHHHH----------HhcCCCEEEEeccCCCCHHH
Q psy2646 71 RYA-CDNVNKLLVGNKNDQTSKK----------------AVDYQVAKEYA----------DHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 71 ~~~-~~~~piivv~nK~Dl~~~~----------------~v~~~~~~~~~----------~~~~~~~~~vSa~~~~~i~~ 123 (168)
... ..+.|+++++||+|+...+ .++.+++..++ ...++.++++||+++.|++.
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 543 3579999999999986433 35667777773 23457789999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy2646 124 AFLTMATEIKKRVT 137 (168)
Q Consensus 124 i~~~l~~~~~~~~~ 137 (168)
+|..+.+.+.++.-
T Consensus 308 vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 308 VFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhH
Confidence 99999999987543
No 93
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=2.2e-23 Score=146.83 Aligned_cols=129 Identities=25% Similarity=0.370 Sum_probs=104.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....++...+.+.||||||++++..++..+++++|++|+|||+++++++..+..|+..+.... ..+.|+++|
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 130 (188)
T 1zd9_A 51 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 130 (188)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred cCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 5688888777777778899999999999999999999999999999999999999999998888875432 357999999
Q ss_pred EecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+||+|+.... ...+..... ...+++++++||++|.|++++|+++.+.+.+
T Consensus 131 ~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 131 GNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999997542 222222211 1234679999999999999999999987644
No 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.89 E-value=3.5e-22 Score=140.09 Aligned_cols=131 Identities=20% Similarity=0.290 Sum_probs=104.8
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiv 81 (168)
.+.||++.....+..+.+.+.+|||||++++..++..+++++|++++|||++++++++.+..|+..+.... ..+.|+++
T Consensus 45 ~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 124 (186)
T 1ksh_A 45 TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 124 (186)
T ss_dssp SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred cccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEE
Confidence 35678776655555456889999999999999999999999999999999999999999998888875432 35799999
Q ss_pred EEecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
|+||+|+..... ..+..+... ..+++++++||+++.|++++|+++.+.+.++
T Consensus 125 v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 125 FANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999976432 233322221 2456899999999999999999999887643
No 95
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.88 E-value=6.7e-21 Score=135.23 Aligned_cols=136 Identities=39% Similarity=0.625 Sum_probs=117.0
Q ss_pred ccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE
Q psy2646 5 LPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 5 ~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 80 (168)
.||++ ...+.+++..+.+.+||++|++++..++..++.+++++++|+|+++..++..+..|+..+......+.|++
T Consensus 35 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~ 114 (199)
T 2f9l_A 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 114 (199)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 46654 45677889999999999999999999999999999999999999999999998889888765544578999
Q ss_pred EEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCC
Q psy2646 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~ 140 (168)
+++||+|+...+.+...++..++...++.++++||+++.|++++|+++.+.+.+......
T Consensus 115 ~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~ 174 (199)
T 2f9l_A 115 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174 (199)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred EEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999998766677778888998889999999999999999999999999987654443
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=3.4e-22 Score=139.81 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=99.0
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||.+.....+..+++.+.+|||||++++..++..+++++|++++|||+++++++..+..|+..+.... ..+.|+++|
T Consensus 49 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 128 (181)
T 2h17_A 49 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 128 (181)
T ss_dssp EECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred cCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEE
Confidence 3466665444444345889999999999999999999999999999999999999999999888875432 357999999
Q ss_pred EecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+||+|+... ....+..... ...+++++++||++|.|++++|+++.+.
T Consensus 129 ~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 129 ANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred EECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 999999753 2333333332 2235689999999999999999999754
No 97
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=6.8e-23 Score=157.86 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=105.5
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHH
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD----------QETFNNLKQWLEEIDR 71 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~ 71 (168)
++..||+|+....+..+.+.+++|||+|+++++..|..|+++++++|||||+++ .+++.+...|+..+..
T Consensus 183 ~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 183 LARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp HCCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred hccCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 456788888877777667999999999999999999999999999999999999 7799999999998865
Q ss_pred hc-CCCCcEEEEEecCCCCCCc----------------ccCHHHHHHHH--------H---hcCCCEEEEeccCCCCHHH
Q psy2646 72 YA-CDNVNKLLVGNKNDQTSKK----------------AVDYQVAKEYA--------D---HLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 72 ~~-~~~~piivv~nK~Dl~~~~----------------~v~~~~~~~~~--------~---~~~~~~~~vSa~~~~~i~~ 123 (168)
.. ..+.|+|+++||+|+...+ .++.+++..++ . ..++.++++||+++.|+.+
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 42 3579999999999986322 25667776665 1 3457889999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy2646 124 AFLTMATEIKKRVT 137 (168)
Q Consensus 124 i~~~l~~~~~~~~~ 137 (168)
+|.++.+.+.+..-
T Consensus 343 vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 343 VFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=142.15 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=99.6
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+..+.+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+.|+++|
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (183)
T 1moz_A 46 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 125 (183)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEE
T ss_pred cCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEE
Confidence 4567665544444445889999999999999999999999999999999999999999999988875542 357999999
Q ss_pred EecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+||+|+.+. ....+...... ..+++++++||+++.|++++|+++.+.+.+++
T Consensus 126 ~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 126 ANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp EECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 999999753 23333333322 12357999999999999999999999887653
No 99
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=2e-22 Score=156.69 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=108.1
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHH
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD----------QETFNNLKQWLEEIDR 71 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~ 71 (168)
++.+||+|+....+..+.+.+++|||+|+++|+.+|..|+++++++|||||+++ .++|+.+..|+..+..
T Consensus 199 ~~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp HCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ccccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 345678887766665556899999999999999999999999999999999999 8899999999999866
Q ss_pred hc-CCCCcEEEEEecCCCCCCcc---c---------------------------CHHHHHHHH-----Hh--------cC
Q psy2646 72 YA-CDNVNKLLVGNKNDQTSKKA---V---------------------------DYQVAKEYA-----DH--------LK 107 (168)
Q Consensus 72 ~~-~~~~piivv~nK~Dl~~~~~---v---------------------------~~~~~~~~~-----~~--------~~ 107 (168)
.. ..+.|++|++||+|+...+. + +.+++..++ .. .+
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 53 45799999999999854322 1 124444443 21 24
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 108 IPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 108 ~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+.++++||+++.||+++|.++.+.+.+..
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998887654
No 100
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.87 E-value=4.2e-23 Score=156.22 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=101.1
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcc---cchhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCC
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRT---ITSSYYRGAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~ 77 (168)
.+.||++.....++ ..+.++||||||+++|.. .+..|+++++++|+|||+++. +.+..+..|+..+... .++.
T Consensus 30 ~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~i 107 (331)
T 3r7w_B 30 YLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSI 107 (331)
T ss_dssp TCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTC
T ss_pred eecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc-CCCC
Confidence 36789998888774 458999999999999964 358899999999999999987 3444444445555443 4579
Q ss_pred cEEEEEecCCCCCC-------cccCHHHHHHHHHh----cCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSK-------KAVDYQVAKEYADH----LKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 78 piivv~nK~Dl~~~-------~~v~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
|++++|||+|+... +.+..+++.++++. ++++|+++||++ .++.++|..+++.+..
T Consensus 108 pillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 108 NIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp EEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred cEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 99999999999754 34666667777775 678999999998 5899999999876653
No 101
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.87 E-value=3.6e-21 Score=146.11 Aligned_cols=124 Identities=19% Similarity=0.358 Sum_probs=108.4
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.+|||||++++..++..+++++|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+
T Consensus 193 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 193 SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDL 271 (332)
T ss_dssp EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHH
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhc
Confidence 345567888999999999999999999999999999999999999999999987 6888886653 47999999999998
Q ss_pred CCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 89 TSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 89 ~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
... +.+...++..+++.+++ +++++||++|.|++++|+++.+.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 643 45777888889998887 99999999999999999999988753
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.87 E-value=1.2e-21 Score=138.80 Aligned_cols=114 Identities=24% Similarity=0.347 Sum_probs=94.3
Q ss_pred CeEEEEEEEeCCCchhhcccc---hhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-
Q psy2646 17 RTRTLIVIWDTAGQERFRTIT---SSYYRGAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS- 90 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~---~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~- 90 (168)
+..+.+++|||||+++|..+. ..+++++|++|+|||+++. +++..+..|+..+... ..+.|+++|+||+|+.+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCH
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCch
Confidence 677899999999999987665 8999999999999999997 6777777777776443 45899999999999865
Q ss_pred ------CcccCHHHHHHHHH----hcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 91 ------KKAVDYQVAKEYAD----HLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 91 ------~~~v~~~~~~~~~~----~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.+.+...++..+++ .++++++++||++ .|++++|..+++.+
T Consensus 145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 23455555667777 6678999999999 99999999998764
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.9e-22 Score=160.42 Aligned_cols=136 Identities=19% Similarity=0.330 Sum_probs=107.0
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiv 81 (168)
.+.||++.....++.+.+.+.||||||+++|..++..+++++|++|+|||++++++|..+..|+..+.... ..++|+++
T Consensus 349 ~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 428 (497)
T 3lvq_E 349 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 428 (497)
T ss_dssp CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEE
Confidence 36789999999998888999999999999999999999999999999999999999999999888875432 35799999
Q ss_pred EEecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCC
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~ 140 (168)
|+||+|+.... ...+..... ...+++++++||++|.|++++|++|.+.+.++..+..
T Consensus 429 v~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~ 490 (497)
T 3lvq_E 429 FANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAAL 490 (497)
T ss_dssp EEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-------
T ss_pred EEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999997532 222222211 1123569999999999999999999988766554443
No 104
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=4.8e-22 Score=139.56 Aligned_cols=131 Identities=19% Similarity=0.302 Sum_probs=98.8
Q ss_pred cccccceeeeee-------CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCC
Q psy2646 4 LLPYQTLQNKKE-------ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ-ETFNNLKQWLEEIDRYACD 75 (168)
Q Consensus 4 ~~~t~~~~~~~~-------~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~ 75 (168)
+.||++...... ++..+.+.+|||+|+++|..++..++++++++++|||++++ .+++.+..|+..+... .+
T Consensus 33 ~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~ 111 (184)
T 2zej_A 33 QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-AS 111 (184)
T ss_dssp ----CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CT
T ss_pred cceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CC
Confidence 456666544332 24577899999999999999999999999999999999987 5799999999988665 34
Q ss_pred CCcEEEEEecCCCCCCcccC---HHHHHHHHHhcCCC----EEEEeccCCC-CHHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVD---YQVAKEYADHLKIP----FLETSAKNGA-NVEQAFLTMATEIKKR 135 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~----~~~vSa~~~~-~i~~i~~~l~~~~~~~ 135 (168)
+.|+++|+||+|+...+.+. ...+..+++.++++ ++++||+++. +++++++.+.+.+...
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 112 SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 78999999999997654432 23344566666776 9999999997 9999999988776543
No 105
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=4.8e-22 Score=152.65 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=102.9
Q ss_pred cccccceeeeee--CC----eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHH
Q psy2646 4 LLPYQTLQNKKE--ER----TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCT----------DQETFNNLKQWLE 67 (168)
Q Consensus 4 ~~~t~~~~~~~~--~~----~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~ 67 (168)
.++|.|+....+ ++ +.+.+++|||+|+++|+.+|..|+++++++|||||++ +.++|+.+..|+.
T Consensus 161 r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~ 240 (354)
T 2xtz_A 161 RVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 240 (354)
T ss_dssp CCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHH
T ss_pred cccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHH
Confidence 345666665554 44 6799999999999999999999999999999999998 7789999999999
Q ss_pred HHHHhc-CCCCcEEEEEecCCCCCCcc--c-------------------CHHHHHHHHHh----------------cCCC
Q psy2646 68 EIDRYA-CDNVNKLLVGNKNDQTSKKA--V-------------------DYQVAKEYADH----------------LKIP 109 (168)
Q Consensus 68 ~i~~~~-~~~~piivv~nK~Dl~~~~~--v-------------------~~~~~~~~~~~----------------~~~~ 109 (168)
.+.... ..+.|+++++||+|+...+. + +.+++..++.. ..+.
T Consensus 241 ~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~ 320 (354)
T 2xtz_A 241 WVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFK 320 (354)
T ss_dssp HHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEE
T ss_pred HHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceE
Confidence 886543 35799999999999853221 1 13455555332 1245
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 110 FLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 110 ~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++++||+++.|++++|.++.+.+.+...
T Consensus 321 ~~eTSA~d~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 321 IYRTTALDQKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998876543
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=152.36 Aligned_cols=128 Identities=19% Similarity=0.321 Sum_probs=99.7
Q ss_pred ccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEE
Q psy2646 5 LPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVG 83 (168)
Q Consensus 5 ~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~ 83 (168)
.||++.....++...+.++||||||+++|..++..+++.+|++|+|||++++.+|..+..|+..+.... ..+.|+++|+
T Consensus 194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~ 273 (329)
T 3o47_A 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 273 (329)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence 478888888888888999999999999999999999999999999999999999999988877764432 3579999999
Q ss_pred ecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 84 NKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
||+|+..... ..+..... ...+++++++||++|.|++++|++|.+.+.+
T Consensus 274 NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 274 NKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp ECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred ECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 9999976432 22222221 1234679999999999999999999988754
No 107
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=3.8e-22 Score=151.99 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=110.5
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHH
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCT----------DQETFNNLKQWLEEIDR 71 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~ 71 (168)
|+..||+|+....++.+.+.+++|||+|+++++.+|..|+++++++|||||++ +.+++.+...|+..+..
T Consensus 143 ~~~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 143 HNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp HSCCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ecccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 45789999999999888899999999999999999999999999999999998 67889999999988865
Q ss_pred hc-CCCCcEEEEEecCCCCCCcc---------------cCHHHHHHHHH-h--------------------------cCC
Q psy2646 72 YA-CDNVNKLLVGNKNDQTSKKA---------------VDYQVAKEYAD-H--------------------------LKI 108 (168)
Q Consensus 72 ~~-~~~~piivv~nK~Dl~~~~~---------------v~~~~~~~~~~-~--------------------------~~~ 108 (168)
.. ..+.|+++++||+|+...+. ...+++..++. . .++
T Consensus 223 ~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKV 302 (340)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEE
T ss_pred hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcce
Confidence 43 35799999999999853211 13445544332 1 236
Q ss_pred CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 109 PFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 109 ~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
.++++||+++.|++.+|..+.+.+.+
T Consensus 303 y~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 303 YTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987
No 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=5.7e-23 Score=146.35 Aligned_cols=121 Identities=23% Similarity=0.443 Sum_probs=101.8
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
..+.+++..+.+++|||||++++..++..+++++|++|+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 69 ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147 (204)
Confidence 34456677888999999999999999999999999999999999999999986 788777554 2378999999999997
Q ss_pred CCc------------ccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 90 SKK------------AVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 90 ~~~------------~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
... .+...++..+++.+++ +++++||++|.|++++|+++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 532 4455666677777786 899999999999999999998765
No 109
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.83 E-value=2.3e-19 Score=126.66 Aligned_cols=129 Identities=40% Similarity=0.623 Sum_probs=111.7
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ ...+.+++..+.+++||++|++++..++..+++.++++++|+|.++..+++.+..|+..+........|+
T Consensus 58 ~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i 137 (191)
T 1oix_A 58 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 137 (191)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 345554 4567788999999999999999999999999999999999999999999999888888776554457899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++++||+|+...+.+...++..++...++.++++||+++.|++++|+++.+.+
T Consensus 138 ~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 138 MLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999987666777888889988899999999999999999999998764
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.83 E-value=2.3e-20 Score=141.12 Aligned_cols=128 Identities=13% Similarity=0.248 Sum_probs=104.0
Q ss_pred cccccceeeeeeC-CeEEEEEEEeCCCchhh-----cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CC
Q psy2646 4 LLPYQTLQNKKEE-RTRTLIVIWDTAGQERF-----RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CD 75 (168)
Q Consensus 4 ~~~t~~~~~~~~~-~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~ 75 (168)
+.||++.....+. .+.+.+.+|||||++++ ..++..+++++|++|+|||++++++++.+..|...+.... .+
T Consensus 35 ~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~ 114 (307)
T 3r7w_A 35 LGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP 114 (307)
T ss_dssp CCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCC
Confidence 5678877766654 23689999999999988 7788999999999999999999999999877766553321 45
Q ss_pred CCcEEEEEecCCCCC--Ccc----cCHHHHHHHHHhcC---CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTS--KKA----VDYQVAKEYADHLK---IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 76 ~~piivv~nK~Dl~~--~~~----v~~~~~~~~~~~~~---~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+.|+++++||+|+.. .+. +..+++.++++.++ ++++++||++ .++.++|..++..+
T Consensus 115 ~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 115 DAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 799999999999976 343 55567778888887 7999999999 89999998887644
No 111
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=139.30 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=93.1
Q ss_pred eCCeEEEEEEEe-----------------------CCCchhhcccchhhhc---------------------CCcEEEEE
Q psy2646 15 EERTRTLIVIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIVV 50 (168)
Q Consensus 15 ~~~~~~~l~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v 50 (168)
+++..+.++||| ++|+++|..++..+++ ++|++|+|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 467889999999 7888888888888888 89999999
Q ss_pred EeCCCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHH
Q psy2646 51 YDCTDQ--ETFNNLKQWLEEIDRY-ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADH-LKIPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 51 ~d~~~~--~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~i~~ 126 (168)
||++++ .+|+.+..|+..+... ...+.|+++|+||+|+...+.+ +++..++.. .+++++++||+++.|++++|+
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 999998 8999999999988654 2357999999999999765444 466667765 478999999999999999999
Q ss_pred HHHHHHH
Q psy2646 127 TMATEIK 133 (168)
Q Consensus 127 ~l~~~~~ 133 (168)
++.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998763
No 112
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.80 E-value=6.2e-20 Score=131.39 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=84.0
Q ss_pred eeeCCe-EEEEEEEeCCCchhhcc-cchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHH-HH--hcCCCCcEEEEEecC
Q psy2646 13 KKEERT-RTLIVIWDTAGQERFRT-ITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEI-DR--YACDNVNKLLVGNKN 86 (168)
Q Consensus 13 ~~~~~~-~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i-~~--~~~~~~piivv~nK~ 86 (168)
+.+++. .+.+.+|||||+++|.. ++..|++++|++|+|||+++.. ++.....|+..+ .. ....+.|+++|+||+
T Consensus 46 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (214)
T 2fh5_B 46 YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125 (214)
T ss_dssp EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECT
T ss_pred EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECC
Confidence 444543 68899999999999988 8889999999999999999854 455555544443 22 123478999999999
Q ss_pred CCCCCcccCH--HHHHHHHH---------------------------------hc--CCCEEEEeccCC------CCHHH
Q psy2646 87 DQTSKKAVDY--QVAKEYAD---------------------------------HL--KIPFLETSAKNG------ANVEQ 123 (168)
Q Consensus 87 Dl~~~~~v~~--~~~~~~~~---------------------------------~~--~~~~~~vSa~~~------~~i~~ 123 (168)
|+........ ........ .+ +++|+++||++| .|+++
T Consensus 126 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~ 205 (214)
T 2fh5_B 126 DIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQD 205 (214)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHH
Confidence 9976433211 01111100 11 567999999999 99999
Q ss_pred HHHHHHHH
Q psy2646 124 AFLTMATE 131 (168)
Q Consensus 124 i~~~l~~~ 131 (168)
+|+++.+.
T Consensus 206 lf~~l~~~ 213 (214)
T 2fh5_B 206 LEKWLAKI 213 (214)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999865
No 113
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.79 E-value=2.6e-19 Score=134.97 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=96.1
Q ss_pred ccccccceeeee-eCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEE
Q psy2646 3 LLLPYQTLQNKK-EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 3 ~~~~t~~~~~~~-~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~pii 80 (168)
.+.||++..... +..+. .+++||| +++|+.+++.|++++|++|+|||+++++ ++..+..|+..+.. .+.|++
T Consensus 46 ~~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~pii 119 (301)
T 1u0l_A 46 NLKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETV 119 (301)
T ss_dssp TCCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEE
T ss_pred CCCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEE
Confidence 367898843321 22222 6899999 8999999999999999999999999987 78888999987754 378999
Q ss_pred EEEecCCCCCCcccCHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+|+||+|+.+.+.+ +++..+++.++ ++++++||++|.|++++|..+..
T Consensus 120 lv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 120 MVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp EEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred EEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99999999764433 34556666666 89999999999999999987753
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.79 E-value=1.4e-19 Score=124.73 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=83.6
Q ss_pred EEEEEEEeCCCchhhcc------cchhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRT------ITSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+..+.+|||||++++.. +...|++ ++|++++|+|+++.+. ...|+..+... +.|+++|+||+|+..
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAK 122 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHH
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhcc
Confidence 36799999999987753 3356665 8999999999998543 34566666543 689999999999865
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.+.+.. ++..+++.++++++++||++|.|++++|+++.+.+
T Consensus 123 ~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 123 SLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 444432 35667778889999999999999999999998764
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.79 E-value=8.6e-19 Score=126.89 Aligned_cols=118 Identities=22% Similarity=0.229 Sum_probs=87.5
Q ss_pred eEEEEEEEeCCCc------hh----hcccchhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 18 TRTLIVIWDTAGQ------ER----FRTITSSYYRGAHGIIVVYDCTDQETFN--NLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 18 ~~~~l~l~Dt~G~------~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
....+.||||||+ ++ +. .+..++..+|++|+|||++++.++. ....|+..+... ..+.|+++|+||
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK 151 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMT-TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNK 151 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHH-HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEEC
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHH-HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeC
Confidence 3478999999998 33 22 2234578899999999999987764 233455555432 237899999999
Q ss_pred CCCCCCcccCHH---HHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 86 NDQTSKKAVDYQ---VAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 86 ~Dl~~~~~v~~~---~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+|+...+.+... ....++...+ ++++++||++|.|++++|+++.+.+.+...
T Consensus 152 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 152 IDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp GGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 999876666544 3455666666 899999999999999999999999876654
No 116
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=3.9e-18 Score=118.25 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=85.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++. .+.+|||||+++|..++..++..+|++++|||+++....... .++..+. ..+.|+++|+||+|+.
T Consensus 47 ~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~---~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 47 AYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAK---AANVPIIVAINKMDKP 120 (178)
T ss_dssp CCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHG---GGSCCEEEEEETTTSS
T ss_pred EEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH---hCCCCEEEEEECccCC
Confidence 444555554 577999999999999999999999999999999884221111 1222222 2368999999999997
Q ss_pred CCcccCHHHHHHHHHh-------cC--CCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 90 SKKAVDYQVAKEYADH-------LK--IPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~-------~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
.. ...+....... ++ ++++++||++|.|++++|+++.+.+...+.
T Consensus 121 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 121 EA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp CS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 53 12222222222 22 589999999999999999999988776543
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.76 E-value=2.1e-18 Score=139.21 Aligned_cols=116 Identities=21% Similarity=0.332 Sum_probs=95.8
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY 96 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~ 96 (168)
+..+.+.+|||||++.|..++..+++.+|++|+|||+++. +....|+..+... ..+.|+++|+||+|+...+.+..
T Consensus 95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~-~~~~pvilV~NK~Dl~~~~~v~~ 170 (535)
T 3dpu_A 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY-GGKSPVIVVMNKIDENPSYNIEQ 170 (535)
T ss_dssp TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHH-SSSCCEEEEECCTTTCTTCCCCH
T ss_pred CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHh-CCCCCEEEEEECCCcccccccCH
Confidence 4468999999999999999999999999999999999865 5567788888666 34689999999999987777787
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 97 QVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+++..++...+++++++||++|.|++++|+++.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 8888888888999999999999999999999998876543
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=1.6e-18 Score=121.47 Aligned_cols=114 Identities=24% Similarity=0.306 Sum_probs=85.3
Q ss_pred EEEEEeCCC-----------chhhcccchhhhcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------H-HHhcCCCCc
Q psy2646 21 LIVIWDTAG-----------QERFRTITSSYYRG-AHGIIVVYDCTDQETFNNL-KQWLEE--------I-DRYACDNVN 78 (168)
Q Consensus 21 ~l~l~Dt~G-----------~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~p 78 (168)
.+.+||||| ++.+..++..++++ +++++++|++.+..++..+ ..|... + ......+.|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 588999999 67788888888887 7776666666666677665 455432 1 111234799
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCC-------EEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIP-------FLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-------~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+++|+||+|+.... .+.+..+++.++.+ ++++||++|.|++++|+++.+.+.+...
T Consensus 125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 99999999997654 45666777777764 7999999999999999999998876443
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=3.5e-18 Score=126.21 Aligned_cols=120 Identities=20% Similarity=0.157 Sum_probs=92.6
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccc------hhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTIT------SSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
|+..+...++..+..+.||||||+..+...+ ..|+ ..+|++++|+|+++.++. ..|...+... +.|
T Consensus 39 tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~p 112 (258)
T 3a1s_A 39 TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---EKK 112 (258)
T ss_dssp CCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCC
T ss_pred eEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCC
Confidence 4455566666556889999999998876543 5565 589999999999986543 3355555443 799
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+++++||+|+...+.+. .....+++.++++++++||++|.|++++|+++.+.+.
T Consensus 113 vilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 113 VILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 99999999986544443 2356788888999999999999999999999988754
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.74 E-value=1.1e-17 Score=126.44 Aligned_cols=123 Identities=18% Similarity=0.142 Sum_probs=96.1
Q ss_pred cceeeeeeCCe-EEEEEEEeCCCchhhc----------ccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC
Q psy2646 8 QTLQNKKEERT-RTLIVIWDTAGQERFR----------TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN 76 (168)
Q Consensus 8 ~~~~~~~~~~~-~~~l~l~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 76 (168)
.......+... ..++.||||||+..+. ..+..+++.+|++++|+|+++..++.+...|+..+... +
T Consensus 46 ~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~ 122 (308)
T 3iev_A 46 RMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---N 122 (308)
T ss_dssp CSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---C
T ss_pred eeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---C
Confidence 33333334444 6889999999985433 45677889999999999999988888877777777553 6
Q ss_pred CcEEEEEecCCCCCCcccCHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 77 ~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.|+++|+||+|+...+.........+.+.++ .+++++||++|.|++++|+++...+.
T Consensus 123 ~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 123 KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 8999999999997434444566667777765 78999999999999999999998764
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=2.1e-18 Score=120.84 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=89.9
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhc------ccchhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEE
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFR------TITSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLV 82 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 82 (168)
....+...+..+.+|||||++++. .++..++. .+|++++|+|.++ ++....|+..+.. .+.|++++
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv 118 (188)
T 2wjg_A 45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLA 118 (188)
T ss_dssp EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEE
T ss_pred eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEE
Confidence 333343344789999999998775 34566665 4999999999986 4555667766644 36899999
Q ss_pred EecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+...+.+. ..+..+++.++++++++||+++.|++++|+++.+.+...
T Consensus 119 ~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 119 LNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp EECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 9999986544443 345677888889999999999999999999999887543
No 122
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.73 E-value=1.8e-17 Score=116.70 Aligned_cols=118 Identities=14% Similarity=0.204 Sum_probs=85.8
Q ss_pred cceeeeeeCCeEEEEEEEeCCC----------chhhcccchhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAG----------QERFRTITSSYYRGA---HGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 74 (168)
.......+++ .+.+||||| ++.+..++..+++.+ |++++|+|++++.++.+.. ++..+..
T Consensus 60 ~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--- 132 (195)
T 1svi_A 60 QTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--- 132 (195)
T ss_dssp CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---
T ss_pred eeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---
Confidence 3344444444 589999999 778888888888877 9999999999876666532 2222322
Q ss_pred CCCcEEEEEecCCCCCCcccCH--HHHHH-HHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDY--QVAKE-YADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~--~~~~~-~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.+.|+++|+||+|+...+.+.. +++.+ +....+.+++++||+++.|++++|+++.+.+
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 3689999999999977554432 22222 2223457999999999999999999998765
No 123
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.73 E-value=6e-18 Score=115.37 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=76.0
Q ss_pred EEEEEEeCCCchh-------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 20 TLIVIWDTAGQER-------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 20 ~~l~l~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
..+.+|||||++. +...+..+++.+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+...+
T Consensus 49 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 124 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE 124 (161)
T ss_dssp EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG
T ss_pred ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch
Confidence 4788999999987 34455678899999999999998533322 112222222 268999999999996542
Q ss_pred ccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 93 AVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+++.+++ .+++ +++++||+++.|++++|+++.+.+
T Consensus 125 ----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 125 ----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 2233444 5666 899999999999999999998753
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.72 E-value=3.2e-18 Score=127.27 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=91.9
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhc------ccchhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFR------TITSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
|+..+...++. ...+.+|||||++++. .++..|+. .+|++++|+|+++.++. ..|...+... +.|
T Consensus 37 tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~~p 109 (272)
T 3b1v_A 37 TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIET---GIP 109 (272)
T ss_dssp CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT---CSC
T ss_pred cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHhc---CCC
Confidence 45556667776 6789999999998876 34566775 69999999999986543 3455555443 789
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+++++||+|+...+.+. .....+++.++++++++||++|.|++++|+++.+.+
T Consensus 110 ~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 110 VTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp EEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred EEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 99999999986544443 345677888899999999999999999999998764
No 125
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.72 E-value=1.6e-18 Score=120.45 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=82.5
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhccc--------chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEE
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTI--------TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLV 82 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 82 (168)
..+.+++ ..+.+|||||++++... ...+++++|++++|||+++..+++ ...|+..+......+.|+++|
T Consensus 45 ~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv 121 (172)
T 2gj8_A 45 EHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVV 121 (172)
T ss_dssp EEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEE
T ss_pred EEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEE
Confidence 4455565 35889999998653211 123688999999999999887765 346777775554457999999
Q ss_pred EecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+||+|+.+.. . .++...+.+++++||+++.|++++|+++.+.+.
T Consensus 122 ~NK~Dl~~~~-~------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 122 RNKADITGET-L------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EECHHHHCCC-C------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred EECccCCcch-h------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 9999985421 1 122234678999999999999999999987754
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.71 E-value=4.1e-18 Score=125.71 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=85.4
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcc----------cchhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRT----------ITSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN 76 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~----------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 76 (168)
..+...+...+..+.||||||...+.. ++..|+ .++|++|+|+|+++.+++..+. ..+.. .+
T Consensus 37 ~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~---~~l~~---~~ 110 (256)
T 3iby_A 37 EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLT---SQLFE---LG 110 (256)
T ss_dssp EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHH---HHHTT---SC
T ss_pred EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHH---HHHHH---cC
Confidence 344444443335899999999987764 456677 8999999999999866554433 33322 27
Q ss_pred CcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 77 ~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
.|+++++||+|+...+.+.. ....+.+.++++++++||++|.|++++|+++.+.
T Consensus 111 ~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 111 KPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 89999999999865433321 2345777789999999999999999999999875
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=4.7e-17 Score=129.05 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=88.1
Q ss_pred EEEEEEeCCC----------chhhcccchh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 20 TLIVIWDTAG----------QERFRTITSS-YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 20 ~~l~l~Dt~G----------~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
..++|||||| +++|..++.. +++.+|++|+|+|+++..+. ....|...+... +.|+++|+||+|+
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~~---~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHEA---GKAVVIVVNKWDA 318 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT---TCEEEEEEECGGG
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHHc---CCCEEEEEEChhc
Confidence 3789999999 6777766554 78999999999999875332 223455555443 6899999999999
Q ss_pred CCCcccCHHHHHHHHHhc-----CCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 89 TSKKAVDYQVAKEYADHL-----KIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
...+....++..+.+... +++++++||++|.|++++|+++.+.+.....+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 319 VDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp SCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred CCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 876666666666555443 47999999999999999999999888765543
No 128
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.69 E-value=1.8e-16 Score=111.18 Aligned_cols=108 Identities=13% Similarity=0.246 Sum_probs=80.3
Q ss_pred EEEEEeCCC----------chhhcccchhhhcCC---cEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 21 LIVIWDTAG----------QERFRTITSSYYRGA---HGIIVVYDCTDQET--FNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 21 ~l~l~Dt~G----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
.+.+||||| ++.+..++..+++.+ |++++|+|+++..+ ...+..|+... +.|+++|+||
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK 142 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTK 142 (195)
T ss_dssp TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEEC
T ss_pred cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEC
Confidence 578999999 777778888888776 99999999987533 33333343322 6899999999
Q ss_pred CCCCCCcc--cCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKA--VDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 86 ~Dl~~~~~--v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+|+..... ...+++..++... +++++++||+++.|++++|+++.+.+.+
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 99975432 2233445555553 4799999999999999999999987643
No 129
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.68 E-value=2.2e-17 Score=122.92 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=86.1
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhccc----------chhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTI----------TSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 74 (168)
|+..+...+...+..+.+|||||+..+... +..|+ ..+|++|+|+|+++.+.... |...+...
T Consensus 37 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~-- 111 (274)
T 3i8s_A 37 TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL-- 111 (274)
T ss_dssp SSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH--
T ss_pred eEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc--
Confidence 344444555444567889999999876632 23333 79999999999998655443 34444443
Q ss_pred CCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+.|+++|+||+|+.+.+.+. .....+.+.++++++++||++|.|++++|+++.+.+.
T Consensus 112 -~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 112 -GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp -TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred -CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 68999999999986543332 1245677778999999999999999999999876543
No 130
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.67 E-value=3.7e-16 Score=127.13 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=90.3
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
++..+.+.||||||+.+|...+..+++.+|++|+|||+++..+......|..... .+.|+++++||+|+.... .
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~ 140 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--P 140 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--H
Confidence 5667899999999999999888999999999999999998766666666665542 268999999999997643 2
Q ss_pred HHHHHHHHHhcCC---CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 96 YQVAKEYADHLKI---PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 96 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.....++.+.+++ +++++||++|.|++++|+++.+.+.
T Consensus 141 ~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 141 ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 2334456666665 5999999999999999999987653
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.67 E-value=1.2e-16 Score=114.71 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=84.6
Q ss_pred ccceeeeeeC-CeEEEEEEEeCCC----------chhhcccchhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHh
Q psy2646 7 YQTLQNKKEE-RTRTLIVIWDTAG----------QERFRTITSSYYRG---AHGIIVVYDCTDQETFNNLKQWLEEIDRY 72 (168)
Q Consensus 7 t~~~~~~~~~-~~~~~l~l~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 72 (168)
|.......+. .....+.|||||| ++.+..++..|++. +|++++|+|+++..+.. ...|+..+..
T Consensus 65 t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~- 142 (223)
T 4dhe_A 65 TQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP- 142 (223)
T ss_dssp CCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-
T ss_pred ccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-
Confidence 3444455555 4557899999999 45556666677766 78899999998753322 2334444443
Q ss_pred cCCCCcEEEEEecCCCCCCcccCH--HHHHH-HHHh------cCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 73 ACDNVNKLLVGNKNDQTSKKAVDY--QVAKE-YADH------LKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 73 ~~~~~piivv~nK~Dl~~~~~v~~--~~~~~-~~~~------~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.+.|+++|+||+|+.....+.. ..... +... .+.+++++||+++.|++++|+++.+.+...
T Consensus 143 --~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 143 --TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp --GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred --cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3689999999999976433211 11222 2221 457899999999999999999999887544
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=9.3e-16 Score=118.08 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=93.9
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcc---------cchhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRT---------ITSSYYRGAHGIIVVYDCTDQE--TFNNLKQWLEEIDRYACD 75 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---------~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~ 75 (168)
|.......+......+.+|||||...+.. ....+...+|++++|+|+++.. +++....|+..+.... .
T Consensus 201 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~ 279 (357)
T 2e87_A 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K 279 (357)
T ss_dssp SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T
T ss_pred eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C
Confidence 34444444443456799999999854321 1123445799999999998876 6777788888886643 2
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+.|+++|+||+|+.....+ .+...++...+++++++||++|.|++++|+++.+.+....
T Consensus 280 ~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence 7899999999999764433 3455566677899999999999999999999999886543
No 133
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=1.4e-16 Score=118.34 Aligned_cols=122 Identities=22% Similarity=0.184 Sum_probs=89.1
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcc------cchhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRT------ITSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+......+...+..+.+|||||+..+.. ++..|+ .++|++++|+|+++.+ ....|...+... ...|+
T Consensus 38 ~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ 112 (271)
T 3k53_A 38 VEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNI 112 (271)
T ss_dssp CEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSE
T ss_pred EEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCE
Confidence 3344444443445699999999988766 456666 6899999999999853 333444444443 13899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++++||+|+...+.+.. ....+.+.++++++++||.+|.|+.++|+++...+...
T Consensus 113 ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 113 ILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 99999999864333332 25567778899999999999999999999999877543
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.66 E-value=1.4e-16 Score=125.67 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=85.2
Q ss_pred EEEEEEeCCCc----------hhhcccch-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 20 TLIVIWDTAGQ----------ERFRTITS-SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 20 ~~l~l~Dt~G~----------~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
..++||||||+ ++|..++. .+++.+|++++|+|+++..++++. .|+..+... +.|+++++||+|+
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---GKAVVIVVNKWDA 298 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCEEEEEEECGGG
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---CCcEEEEEECccC
Confidence 35899999998 45544443 478899999999999998777765 466666443 6899999999999
Q ss_pred CCCcccCHHHHHH-HHH----hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 89 TSKKAVDYQVAKE-YAD----HLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 89 ~~~~~v~~~~~~~-~~~----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
.+.+....++... +.. ..+++++++||++|.|++++|+.+.+.+....
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 299 VDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp SCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 7655544333322 222 23579999999999999999999998877654
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=1.8e-17 Score=118.86 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=76.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRG----AHGIIVVYDCT-DQETFNNLKQWLEEIDRY----ACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl 88 (168)
....+.+|||||++++...+..+++. +|++|+|||++ +++++..+..|+..+... ...+.|+++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 45678999999999998888888887 89999999999 888899888888887543 2357999999999999
Q ss_pred CCCcccC------HHHHHHHHHhcCCCEEEEeccCCCC
Q psy2646 89 TSKKAVD------YQVAKEYADHLKIPFLETSAKNGAN 120 (168)
Q Consensus 89 ~~~~~v~------~~~~~~~~~~~~~~~~~vSa~~~~~ 120 (168)
...+.+. .+++..++...+++++++||+++.+
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 8765543 3445566666677899999998865
No 136
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.66 E-value=7.1e-16 Score=125.38 Aligned_cols=112 Identities=19% Similarity=0.264 Sum_probs=90.5
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
++..+.+.||||||+.+|...+..+++.+|++|+|||+++..+.+....|..... .+.|+++++||+|+.... .
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~ 142 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V 142 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence 4567899999999999998888889999999999999999877777777765542 368999999999997643 2
Q ss_pred HHHHHHHHHhcCC---CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 96 YQVAKEYADHLKI---PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 96 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.....++.+.+++ +++++||++|.|++++|+++.+.+.
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2334456666665 4999999999999999999987653
No 137
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.65 E-value=3.9e-16 Score=124.14 Aligned_cols=110 Identities=21% Similarity=0.158 Sum_probs=73.6
Q ss_pred EEEEEEEeCCCchhhcccc--------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTIT--------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
++.+.||||||+.++...+ ..+++.+|++++|||++++.++..+..+...+... .+.|+++|+||+|+..
T Consensus 280 g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 280 KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAA 357 (476)
T ss_dssp TEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCT
T ss_pred CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCC
Confidence 3679999999998765443 34788999999999999987775433333333332 2689999999999976
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
..... ...+.+....+++++||++|.|++++|+++.+.+.
T Consensus 358 ~~~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 358 NADAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTHHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ccchh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 54432 12344332378999999999999999999998876
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.63 E-value=4.3e-16 Score=119.17 Aligned_cols=111 Identities=16% Similarity=0.300 Sum_probs=88.4
Q ss_pred EEEEEEeCCCchh----hcccchhhhc---CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCC
Q psy2646 20 TLIVIWDTAGQER----FRTITSSYYR---GAHGIIVVYDCTD---QETFNNLKQWLEEIDRYA--CDNVNKLLVGNKND 87 (168)
Q Consensus 20 ~~l~l~Dt~G~~~----~~~~~~~~~~---~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~D 87 (168)
..+.||||||..+ +..++..|++ .+|++|+|||+++ .++++.+..|+..+..+. ....|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 5799999999743 3345555655 4999999999998 788999999999887653 24799999999999
Q ss_pred CCCCcccCHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+...+ +....+.+.++ .+++++||+++.|++++++++.+.+.+
T Consensus 286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 86532 34455666665 789999999999999999999988754
No 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.63 E-value=8e-16 Score=120.23 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=87.1
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--H
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--Y 96 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~ 96 (168)
...+.||||||+++|...+..++..+|++|+|+|+++..++.....++..+.... ..|+++++||+|+.+..... .
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHH
Confidence 3789999999999999988999999999999999998766777777777665542 35899999999997643221 1
Q ss_pred HHHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 97 QVAKEYADHL---KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 97 ~~~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++..++.... +++++++||++|.|++++++++...+
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 2222333222 47899999999999999999998755
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=1.3e-16 Score=125.08 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=85.1
Q ss_pred EEEEEeCCCchhhcccc-------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q psy2646 21 LIVIWDTAGQERFRTIT-------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~-------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 93 (168)
.+.||||||++++..+. ..++..+|++|+|||++.. .....|+..+... +.|+++|+||+|+.....
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence 78999999998876553 4478899999999999433 2335566666555 689999999999987554
Q ss_pred cCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 94 VDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 94 v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
. +....+++.++++++++||++|.|++++|+++.+.+...
T Consensus 158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 3 455566777789999999999999999999999887433
No 141
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.61 E-value=1.7e-15 Score=117.03 Aligned_cols=123 Identities=7% Similarity=0.015 Sum_probs=91.4
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGN 84 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~n 84 (168)
.|+......++.....+.||||||+++|.......++.+|++|+|+| +. ..+.....++..+... +.|. ++++|
T Consensus 46 iTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~---~i~~~ivvvN 120 (370)
T 2elf_A 46 TSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL---GFKHGIIALT 120 (370)
T ss_dssp EESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc---CCCeEEEEEE
Confidence 45666666677666789999999999987777778899999999999 43 3455556666555444 5677 89999
Q ss_pred -cCCCCCCcccCH--HHHHHHHHhcC---CCEEE--EeccC---CCCHHHHHHHHHHHHHH
Q psy2646 85 -KNDQTSKKAVDY--QVAKEYADHLK---IPFLE--TSAKN---GANVEQAFLTMATEIKK 134 (168)
Q Consensus 85 -K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~--vSa~~---~~~i~~i~~~l~~~~~~ 134 (168)
|+|+ +.+.+.. +++..+.+.++ +++++ +||++ +.|++++++.+...+..
T Consensus 121 NK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 121 RSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred eccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 9999 5332222 34444554443 68999 99999 99999999999887654
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.61 E-value=6.3e-15 Score=117.34 Aligned_cols=113 Identities=24% Similarity=0.182 Sum_probs=83.1
Q ss_pred eeeeCCeEEEEEEEeCCCch-hhcc--------cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEE
Q psy2646 12 NKKEERTRTLIVIWDTAGQE-RFRT--------ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLV 82 (168)
Q Consensus 12 ~~~~~~~~~~l~l~Dt~G~~-~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 82 (168)
.+.+++ ..+.||||||.. ++.. ....+++.+|++|+|||++++.++++.. ++..+ .+.|+++|
T Consensus 285 ~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV 356 (482)
T 1xzp_A 285 EIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVV 356 (482)
T ss_dssp EEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEE
T ss_pred EEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEE
Confidence 344444 578999999987 5542 1245788999999999999887766533 33322 36899999
Q ss_pred EecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+... +..++...+.. .+++++++||++|.|++++|+++.+.+...
T Consensus 357 ~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 357 INKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQEI 406 (482)
T ss_dssp EEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred EECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 999999653 34444444432 457899999999999999999999986643
No 143
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.60 E-value=3.4e-15 Score=112.52 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=89.0
Q ss_pred CCeEEEEEEEe-CCC-----chhhcccchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 16 ERTRTLIVIWD-TAG-----QERFRTITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 16 ~~~~~~l~l~D-t~G-----~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
-|+.+.+++|| +.| +++++.+.+.+++++|++++|+|+++++ ++..+..|+..+... +.|+++|+||+|+
T Consensus 46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~---~~~~ilV~NK~DL 122 (302)
T 2yv5_A 46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF---KVEPVIVFNKIDL 122 (302)
T ss_dssp BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT---TCEEEEEECCGGG
T ss_pred CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC---CCCEEEEEEcccC
Confidence 45667788887 433 6788888899999999999999999886 888888999877543 7899999999999
Q ss_pred CCCcccC-HHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHH
Q psy2646 89 TSKKAVD-YQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 89 ~~~~~v~-~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~ 129 (168)
.+...+. .++...+.+.++++++++||+++.|+++++..+.
T Consensus 123 ~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 123 LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 7643222 3445556667789999999999999999998654
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.60 E-value=6.3e-15 Score=118.56 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=64.1
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......++.+++.+.||||||+.+|...+..+++.+|++|+|+|+++..+......|. .+.. .++|+++++||+
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~ 144 (528)
T 3tr5_A 69 SVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKM 144 (528)
T ss_dssp SSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECT
T ss_pred eEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCC
Confidence 555666667667789999999999999998899999999999999999876665554443 3322 368999999999
Q ss_pred CCCC
Q psy2646 87 DQTS 90 (168)
Q Consensus 87 Dl~~ 90 (168)
|+..
T Consensus 145 Dl~~ 148 (528)
T 3tr5_A 145 DRDT 148 (528)
T ss_dssp TSCC
T ss_pred CCcc
Confidence 9864
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.59 E-value=2.7e-15 Score=119.61 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=83.2
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v 94 (168)
....+.||||||+++|...+..++..+|++|+|+|+++ +++.+.+. .+... +.|+++++||+|+.+....
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~ 143 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEI 143 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhH
Confidence 34689999999999998888889999999999999987 34444332 23222 6888999999999753221
Q ss_pred --CHHHHHHHHHhc----CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 95 --DYQVAKEYADHL----KIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 95 --~~~~~~~~~~~~----~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
..++...+.... +++++++||++|.|+++++++|...+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 144 KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 123344455444 579999999999999999999998776
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.59 E-value=3.3e-15 Score=119.20 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=79.3
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCcEE
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFN------NLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~pii 80 (168)
|+......++.....+.||||||+++|...+..++..+|++|+|||+++..++. .....+...... ...|++
T Consensus 98 Ti~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iI 175 (483)
T 3p26_A 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLI 175 (483)
T ss_dssp SCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEE
T ss_pred ceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEE
Confidence 555666777777889999999999999999999999999999999999864322 222222222222 235699
Q ss_pred EEEecCCCCCCcccCHHHH----HHHHHhc-----CCCEEEEeccCCCCHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQVA----KEYADHL-----KIPFLETSAKNGANVEQ 123 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~----~~~~~~~-----~~~~~~vSa~~~~~i~~ 123 (168)
+++||+|+.+.+....++. ..+...+ +++++++||++|.|+.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 9999999976333222222 2233333 36899999999999975
No 147
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.59 E-value=1.9e-15 Score=113.87 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=79.2
Q ss_pred eCCeEEEEEEEeCCCchh--------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEec
Q psy2646 15 EERTRTLIVIWDTAGQER--------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL-EEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 15 ~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piivv~nK 85 (168)
+..+..++.||||||..+ +......+++.+|++++|||+++..+.. ..|+ ..+... ..+.|+++|+||
T Consensus 50 ~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK 126 (301)
T 1wf3_A 50 LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNK 126 (301)
T ss_dssp EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEEC
T ss_pred EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEEC
Confidence 334467899999999875 3445567889999999999998764433 2343 444333 246899999999
Q ss_pred CCCCCCcccCHHHHHHHHHh-cC-CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADH-LK-IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+|+...... ....... .+ .+++++||++|.|++++|+++...+
T Consensus 127 ~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 127 LDAAKYPEE----AMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp GGGCSSHHH----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cccCCchHH----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 999754320 1222222 23 4789999999999999999998765
No 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.59 E-value=1.1e-14 Score=113.89 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=75.0
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ----ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA- 93 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 93 (168)
...+.||||||+++|...+...+..+|++|+|+|+++. ++++.+. .+... ...|+++++||+|+.....
T Consensus 80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTT
T ss_pred ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHH
Confidence 37899999999999887777778889999999999953 4444333 22222 1358999999999976433
Q ss_pred -cCHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 94 -VDYQVAKEYADH---LKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 94 -v~~~~~~~~~~~---~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
...+++.++.+. .+++++++||++|.|+++++++|...+
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 233455566654 257999999999999999999988654
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.58 E-value=9.4e-15 Score=115.32 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=82.6
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHhcCCCCc-
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQET---FN---NLKQWLEEIDRYACDNVN- 78 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p- 78 (168)
.|+......++..+..+.||||||+++|...+..++..+|++|+|+|+++... |+ .....+..+... +.|
T Consensus 81 iTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v~~ 157 (439)
T 3j2k_7 81 KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GVKH 157 (439)
T ss_pred ceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CCCe
Confidence 45666666677777899999999999999888889999999999999987531 11 222222222222 566
Q ss_pred EEEEEecCCCCCCc--c----cCHHHHHHHHHhcC------CCEEEEeccCCCCHHHHHH
Q psy2646 79 KLLVGNKNDQTSKK--A----VDYQVAKEYADHLK------IPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 79 iivv~nK~Dl~~~~--~----v~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~i~~ 126 (168)
+++++||+|+.... . ....+...+.+.++ ++++++||++|.|+.++++
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999999985321 1 11123334444443 5799999999999999766
No 150
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=3.5e-15 Score=117.65 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=81.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.....++.....+.||||||+++|...+..++..+|++|+|+|+++... .....++..+... .-.|+++++||+|+.
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLN 170 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTT
T ss_pred eeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCC
Confidence 3344455566789999999999998888889999999999999997532 2333444444333 123699999999997
Q ss_pred CCcc--c--CHHHHHHHHHhcC-----CCEEEEeccCCCCHHHHHH
Q psy2646 90 SKKA--V--DYQVAKEYADHLK-----IPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 90 ~~~~--v--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~i~~ 126 (168)
+... + ...+...+++.++ ++++++||++|.|+.+++.
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 5321 1 1234455666666 6899999999999988544
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.57 E-value=5.9e-15 Score=116.49 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=76.6
Q ss_pred EEEEEEeCCCchh---------hcccchhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 20 TLIVIWDTAGQER---------FRTITSSYYRGAHGIIVVYDCTDQETFNN--LKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 20 ~~l~l~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
..+++|||||++. +...+..+++++|++++|||+++..+..+ +..|+. .. +.|+++|+||+|+
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~---~~---~~p~ilv~NK~D~ 122 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLR---KS---TVDTILVANKAEN 122 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHH---HH---TCCEEEEEESCCS
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCCEEEEEeCCCC
Confidence 4688999999764 23445678999999999999987544332 233332 22 6899999999997
Q ss_pred CCCcccCHHHH-HHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVA-KEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 89 ~~~~~v~~~~~-~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
... . .... .++. .+++ +++++||.+|.|+.++|+++...+...
T Consensus 123 ~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 123 LRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp HHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 432 1 1222 3343 4566 789999999999999999999888653
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.57 E-value=2.9e-15 Score=117.12 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=80.4
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEec
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNK 85 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK 85 (168)
|+......++.....+.||||||+++|...+..++..+|++|+|+|+++... .....++..+... +.| +++++||
T Consensus 62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK 137 (405)
T 2c78_A 62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNK 137 (405)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEEC
T ss_pred CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEC
Confidence 4445556666666789999999999998888889999999999999987643 3345555555443 578 8999999
Q ss_pred CCCCCCcc-c--CHHHHHHHHHhcC-----CCEEEEeccCCCC
Q psy2646 86 NDQTSKKA-V--DYQVAKEYADHLK-----IPFLETSAKNGAN 120 (168)
Q Consensus 86 ~Dl~~~~~-v--~~~~~~~~~~~~~-----~~~~~vSa~~~~~ 120 (168)
+|+..... + ...+...+.+.++ ++++++||++|.|
T Consensus 138 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 138 VDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 99974221 1 1124445555554 6899999999987
No 153
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=107.29 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=69.0
Q ss_pred CCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH----HHhc-CCCCcEEEEEecC-CCCCCcccCHHHHH
Q psy2646 27 TAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI----DRYA-CDNVNKLLVGNKN-DQTSKKAVDYQVAK 100 (168)
Q Consensus 27 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i----~~~~-~~~~piivv~nK~-Dl~~~~~v~~~~~~ 100 (168)
.+||+.++++|+.|+.++|++|||+|.+|.+.++ ...-+..+ .... ..+.|++|++||. |+++ .++..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 4589999999999999999999999999875433 33333222 1211 2578999999995 7754 34444443
Q ss_pred HHHH----hcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 101 EYAD----HLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 101 ~~~~----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+... .+.+.+..|||.+|+|+.+.++||...+..
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 3221 234789999999999999999999976643
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.56 E-value=6.8e-15 Score=114.74 Aligned_cols=121 Identities=15% Similarity=0.089 Sum_probs=84.4
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEec
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNK 85 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK 85 (168)
|+......++.....+.||||||+++|...+..+++.+|++|+|+|+++....+. ..++..+... +.| +++++||
T Consensus 53 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK 128 (397)
T 1d2e_A 53 TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNK 128 (397)
T ss_dssp EEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEEC
T ss_pred EEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEEC
Confidence 4444555566666789999999999998888888999999999999998533332 2233333333 678 6899999
Q ss_pred CCCCCCcc-c--CHHHHHHHHHhcC-----CCEEEEeccCCCC----------HHHHHHHHHHH
Q psy2646 86 NDQTSKKA-V--DYQVAKEYADHLK-----IPFLETSAKNGAN----------VEQAFLTMATE 131 (168)
Q Consensus 86 ~Dl~~~~~-v--~~~~~~~~~~~~~-----~~~~~vSa~~~~~----------i~~i~~~l~~~ 131 (168)
+|+.+... + ...+..++.+.++ ++++++||++|.| +.++++.+...
T Consensus 129 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 129 ADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 99974221 1 1234555666555 6899999999765 66666666554
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.56 E-value=3.2e-15 Score=117.90 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=81.5
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCC-CcEE
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----ACDN-VNKL 80 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~-~pii 80 (168)
.|+......++.....+.||||||+++|...+..++..+|++|+|||+++ .+|+....|..+..++ ...+ .|++
T Consensus 70 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 70 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLI 148 (435)
T ss_dssp -------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCE
T ss_pred ceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEE
Confidence 35555555666777889999999999999888889999999999999998 6676443332222111 0113 4689
Q ss_pred EEEecCCCCCCc--c----cCHHHHHHHHHhcC-----CCEEEEeccCCCCHHHHHH
Q psy2646 81 LVGNKNDQTSKK--A----VDYQVAKEYADHLK-----IPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 81 vv~nK~Dl~~~~--~----v~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~i~~ 126 (168)
+++||+|+.+.. . ...+++..++..++ ++++++||++|.|+.+++.
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred EEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 999999997521 1 11234555666555 6799999999999986654
No 156
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.55 E-value=1e-15 Score=121.69 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=68.0
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCc-EEE
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TFNNLKQWLEEIDRYACDNVN-KLL 81 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iiv 81 (168)
.|+......+......+.||||||+++|...+..++..+|++|+|||+++.. +|+....+...+......++| +++
T Consensus 107 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iiv 186 (467)
T 1r5b_A 107 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVV 186 (467)
T ss_dssp ------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEE
T ss_pred ceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEE
Confidence 4555554455545678999999999999988888899999999999999752 332211222222111122577 999
Q ss_pred EEecCCCCCCc----c--cCHHHHHHHHHhc-------CCCEEEEeccCCCCHHHHH
Q psy2646 82 VGNKNDQTSKK----A--VDYQVAKEYADHL-------KIPFLETSAKNGANVEQAF 125 (168)
Q Consensus 82 v~nK~Dl~~~~----~--v~~~~~~~~~~~~-------~~~~~~vSa~~~~~i~~i~ 125 (168)
++||+|+.... . ....+...+.+.+ +++++++||++|.|+.+++
T Consensus 187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 187 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99999996421 0 1112344555554 3569999999999998766
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.54 E-value=2.5e-14 Score=111.93 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=79.2
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ----ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA- 93 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 93 (168)
...+.||||||+++|.......+..+|++|+|+|+++. ++.+.+. .+.... ..|+++++||+|+.....
T Consensus 82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHH
T ss_pred ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHH
Confidence 37899999999999887767778889999999999953 3444333 222221 358999999999976432
Q ss_pred -cCHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 94 -VDYQVAKEYADH---LKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 94 -v~~~~~~~~~~~---~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
...+++..+.+. .+++++++||++|.|+++++++|...+
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 122344455543 357999999999999999999988654
No 158
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.52 E-value=1.5e-13 Score=111.88 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=78.9
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD-- 95 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~-- 95 (168)
.+.||||||++.|..++..+++.+|++|+|||+++ +++++.+.. +.. .+.|+++++||+|+.......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccC
Confidence 59999999999999999999999999999999998 566655432 222 368999999999986421100
Q ss_pred -----------H---H-------HHHHHHHhc---------------CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 96 -----------Y---Q-------VAKEYADHL---------------KIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 96 -----------~---~-------~~~~~~~~~---------------~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
. . +........ .++++++||++|.|+.++++++...+..
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 0 011111111 1489999999999999999999987754
No 159
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.52 E-value=7.2e-15 Score=115.90 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=77.1
Q ss_pred ceeeeeeCCeEEEEEEEeCCCch--------hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQE--------RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 80 (168)
......++..+..+.+|||||++ ++...+..+++.+|++|+|+|+.+..+..+ .++..+.+ ..+.|++
T Consensus 40 d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvi 115 (436)
T 2hjg_A 40 DRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVV 115 (436)
T ss_dssp -CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEE
T ss_pred ceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEE
Confidence 34445555556689999999985 566677889999999999999988655443 23333222 2478999
Q ss_pred EEEecCCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+|+||+|+..... ...++. .+++ +++++||.+|.|+.++++++...+.
T Consensus 116 lv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 116 LAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp EEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred EEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 9999999864321 111222 3454 7899999999999999999988764
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.51 E-value=1.9e-15 Score=121.51 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=80.0
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA--VDYQ 97 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--v~~~ 97 (168)
..+.||||||++.|..++..++..+|++|+|||+++......... +..+. ..+.|+++++||+|+..... +. .
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~-l~~~~---~~~vPiIVViNKiDl~~~~~~~v~-~ 126 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVES-IQHAK---DAHVPIVLAINKCDKAEADPEKVK-K 126 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHH-HHHHH---TTTCCEEECCBSGGGTTTSCCSSS-S
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHH-HHHHH---HcCCcEEEEEecccccccchHHHH-H
Confidence 478999999999999999999999999999999998644433332 22232 33689999999999874321 11 1
Q ss_pred HHHHH---HHhc--CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 98 VAKEY---ADHL--KIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 98 ~~~~~---~~~~--~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+...+ +..+ .++++++||++|.|++++|+++...+.
T Consensus 127 ~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 127 ELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 22111 1222 258999999999999999999987654
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.50 E-value=1.7e-14 Score=114.35 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=73.0
Q ss_pred eeeeCCeEEEEEEEeCCCchhhcccc--------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 12 NKKEERTRTLIVIWDTAGQERFRTIT--------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 12 ~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
.+.+++ ..+.||||||..++...+ ..+++.+|++++|+|++++.+... ..|+..+ ...|+++|+
T Consensus 266 ~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~ 337 (462)
T 3geh_A 266 QLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVM 337 (462)
T ss_dssp EEEETT--EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEE
T ss_pred EEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEE
Confidence 344555 568999999986654333 236789999999999998765544 3444444 236999999
Q ss_pred ecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
||+|+.....+. ....+. .+.+++++||++|.|++++++++.+.+...
T Consensus 338 NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 338 NKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp ECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred ECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 999997654432 111111 347899999999999999999999887654
No 162
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.50 E-value=6e-14 Score=105.66 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=80.4
Q ss_pred eCCeEEEEEEEeCCCch---------hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 15 EERTRTLIVIWDTAGQE---------RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 15 ~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
+.....++.+|||||.. .+......+++.+|++++|+|+++. .....|+..... ..+.|+++++||
T Consensus 51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~---~~~~~~i~~~l~--~~~~P~ilvlNK 125 (301)
T 1ega_A 51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW---TPDDEMVLNKLR--EGKAPVILAVNK 125 (301)
T ss_dssp EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC---CHHHHHHHHHHH--SSSSCEEEEEES
T ss_pred EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC---CHHHHHHHHHHH--hcCCCEEEEEEC
Confidence 34445789999999987 3344556778999999999999762 222233332222 236899999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+|+...+......+..+.+.++. .++++||+++.|++++++.+...+.
T Consensus 126 ~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 126 VDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred cccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 99876222222344456666665 6999999999999999999886543
No 163
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.50 E-value=3.5e-14 Score=121.59 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=84.3
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKN 86 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~ 86 (168)
+....+.++.....+.||||||+++|......++..+|++|+|||+++... .....++..+... ++| +|+++||+
T Consensus 347 Idva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKi 422 (1289)
T 3avx_A 347 INTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKC 422 (1289)
T ss_dssp -CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECC
T ss_pred EEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeec
Confidence 334445566667889999999999998888888999999999999997532 2333444444433 578 79999999
Q ss_pred CCCCCccc---CHHHHHHHHHhcC-----CCEEEEeccCC--------CCHHHHHHHHHHH
Q psy2646 87 DQTSKKAV---DYQVAKEYADHLK-----IPFLETSAKNG--------ANVEQAFLTMATE 131 (168)
Q Consensus 87 Dl~~~~~v---~~~~~~~~~~~~~-----~~~~~vSa~~~--------~~i~~i~~~l~~~ 131 (168)
|+.+.... ...++..+.+.++ ++++++||++| .|+.++++++...
T Consensus 423 DLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 423 DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 99753221 1234555666554 68999999999 3466666666543
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.49 E-value=3.1e-14 Score=112.90 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=81.8
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCc-
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TFN---NLKQWLEEIDRYACDNVN- 78 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p- 78 (168)
.|+......++.....+.||||||+++|...+..++..+|++|+|||+++.. +|+ ....++..+... +.|
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~ 147 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQ 147 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCE
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCe
Confidence 4566666667777789999999999999888888999999999999999752 221 222233333222 455
Q ss_pred EEEEEecCCCCCCcc--c--CHHHHHHHHHhcC-----CCEEEEeccCCCCHHHH
Q psy2646 79 KLLVGNKNDQTSKKA--V--DYQVAKEYADHLK-----IPFLETSAKNGANVEQA 124 (168)
Q Consensus 79 iivv~nK~Dl~~~~~--v--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~i 124 (168)
+++++||+|+.+... + ..+++..+.+.++ ++++++||++|.|+.++
T Consensus 148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999999999973111 1 1233444555554 68999999999998754
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.49 E-value=2.7e-13 Score=104.52 Aligned_cols=122 Identities=18% Similarity=0.132 Sum_probs=83.9
Q ss_pred eeeeeCCeEEEEEEEeCCCch---------hhcccchhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcE
Q psy2646 11 QNKKEERTRTLIVIWDTAGQE---------RFRTITSSYYRGAHGIIVVYDCTDQE--TFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~pi 79 (168)
..+.+++ ..+.+|||+|.- .|...+. .+..+|++++|+|++++. .......|...+......+.|+
T Consensus 219 ~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ 295 (364)
T 2qtf_A 219 YAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPI 295 (364)
T ss_dssp EEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCE
T ss_pred EEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCE
Confidence 4455556 568899999962 2333322 578899999999999876 5555555665555543457899
Q ss_pred EEEEecCCCCCCcccC-HHHHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVD-YQVAKEYADHL---KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~-~~~~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++|+||+|+.+..... ...+..++..+ +.+++++||+++.|++++++++.+.+...
T Consensus 296 ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 296 LVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 9999999986542100 11222233433 24689999999999999999998876654
No 166
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=105.05 Aligned_cols=107 Identities=7% Similarity=0.045 Sum_probs=74.2
Q ss_pred CCCchhhcccchhhhcCCcEEEEEEeCCChhhHH---HHHHHHHHHHHh-cCCCCcEEEEEec-CCCCCCcccCHHHHHH
Q psy2646 27 TAGQERFRTITSSYYRGAHGIIVVYDCTDQETFN---NLKQWLEEIDRY-ACDNVNKLLVGNK-NDQTSKKAVDYQVAKE 101 (168)
Q Consensus 27 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~-~~~~~piivv~nK-~Dl~~~~~v~~~~~~~ 101 (168)
.+||+.++++|+.|+.++||+|||+|.+|.+.++ ++.++...+... ...+.|++|++|| .|+++. ++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHH
Confidence 5789999999999999999999999999886433 222221222221 1357999999996 688653 44444333
Q ss_pred HHH----hcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 102 YAD----HLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 102 ~~~----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
... ...+.+..|||.+|+|+.+.++|+...+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 211 1346799999999999999999999876543
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2e-14 Score=117.53 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=79.7
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCcEE
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TF---NNLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~pii 80 (168)
|+......++.....+.||||||+++|...+..+++.+|++|+|||+++.. ++ ......+...... ...|++
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iI 309 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLI 309 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEE
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEE
Confidence 555666667777789999999999999988888999999999999998742 11 1112222222221 124599
Q ss_pred EEEecCCCCCCcccCHH----HHHHHHHhc-----CCCEEEEeccCCCCHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQ----VAKEYADHL-----KIPFLETSAKNGANVEQA 124 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~----~~~~~~~~~-----~~~~~~vSa~~~~~i~~i 124 (168)
||+||+|+......... +...+.... +++++++||++|.|+.++
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999999763222222 233333333 368999999999999876
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.47 E-value=6.1e-15 Score=117.64 Aligned_cols=105 Identities=17% Similarity=0.275 Sum_probs=76.1
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC--cc
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK--KA 93 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~--~~ 93 (168)
+..+.||||||++.|..++..++..+|++|+|||+++. ++.+.+ ..+.. .+.|+++++||+|+.+. ..
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~ 122 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDR 122 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHH
Confidence 35789999999999999999999999999999999873 343332 22222 36899999999999642 11
Q ss_pred cCHH--HHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 94 VDYQ--VAKEYADHLK--IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 94 v~~~--~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+... +...+.+.++ ++++++||++|.|++++|+++..
T Consensus 123 v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 123 VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 1100 0001122233 68999999999999999999874
No 169
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.46 E-value=2.2e-13 Score=107.48 Aligned_cols=119 Identities=20% Similarity=0.196 Sum_probs=79.4
Q ss_pred eeeeCCeEEEEEEEeCCCchhhcccc------------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 12 NKKEERTRTLIVIWDTAGQERFRTIT------------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 12 ~~~~~~~~~~l~l~Dt~G~~~~~~~~------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
.+.+++. .+.+|||+|..++.... ..+++.+|++++++|+++..+..+. .+...+.. .+.|+
T Consensus 222 ~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ 295 (439)
T 1mky_A 222 EVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRAS 295 (439)
T ss_dssp EEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEE
T ss_pred EEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCE
Confidence 3445555 57899999985433221 2467789999999999876555442 23333332 36899
Q ss_pred EEEEecCCCCCCcccCHHHHHH-HHH----hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKE-YAD----HLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~-~~~----~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
++++||+|+...+.....+... +.. ....+++++||++|.|++++|+.+.+.+....
T Consensus 296 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 296 VVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp EEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999997654433333322 222 23479999999999999999999998776653
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=2.1e-14 Score=110.69 Aligned_cols=127 Identities=15% Similarity=0.193 Sum_probs=70.6
Q ss_pred cccceeeeee----CCeEEEEEEEeCCCc-------hhhcccch-------hhhcCCc-------------EEEEEEeCC
Q psy2646 6 PYQTLQNKKE----ERTRTLIVIWDTAGQ-------ERFRTITS-------SYYRGAH-------------GIIVVYDCT 54 (168)
Q Consensus 6 ~t~~~~~~~~----~~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~~d-------------~~i~v~d~~ 54 (168)
||++.....+ ++..+.+.+|||||. +.|..++. .|++.++ +++|+++..
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 5555443333 355678999999999 77777776 6665543 455555542
Q ss_pred ChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH--HHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 55 DQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY--QVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 55 ~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
..++..+. .|+..+ ..++|+|+|+||+|+...+.+.. ..+..++..++++++++||+++.+ ++.|.++.+.
T Consensus 157 -~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 157 -GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp -SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHH
T ss_pred -CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 23344433 333333 35789999999999977555443 456667777789999999999999 9999999998
Q ss_pred HHHHhcc
Q psy2646 132 IKKRVTK 138 (168)
Q Consensus 132 ~~~~~~~ 138 (168)
+....+.
T Consensus 231 i~~~ip~ 237 (361)
T 2qag_A 231 LKASIPF 237 (361)
T ss_dssp HHHTCSC
T ss_pred HHhcCCC
Confidence 8876553
No 171
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.43 E-value=2.6e-13 Score=99.81 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=74.6
Q ss_pred eEEEEEEEeCCCchhhcccc-----------hhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEe-
Q psy2646 18 TRTLIVIWDTAGQERFRTIT-----------SSYYRGAHGIIVVYDCTDQET-FNNLKQWLEEIDRYACDNVNKLLVGN- 84 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~-----------~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~n- 84 (168)
.+..+.||||||+..+.... ..+++.+|++|+|+|+++... ...+..++..+... ....|+++++|
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~n 147 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTH 147 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEEC
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEc
Confidence 34679999999987653322 236789999999999986322 22232333333111 11346666666
Q ss_pred cCCCCCCcccCH-------HHHHHHHHhcCCC---E--EEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 85 KNDQTSKKAVDY-------QVAKEYADHLKIP---F--LETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 85 K~Dl~~~~~v~~-------~~~~~~~~~~~~~---~--~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
|+|+... .+.. .++..+....+.. + +++||+++.|++++|+++.+.+....
T Consensus 148 K~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 148 KEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp GGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 9999743 2222 2234455555432 2 78999999999999999999887644
No 172
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.39 E-value=1.2e-12 Score=107.96 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=60.9
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+....+.+.||||||+.+|...+..+++.+|++++|+|+++..... ...++..+... +.|+++++||+
T Consensus 61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKi 136 (665)
T 2dy1_A 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKL 136 (665)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECG
T ss_pred eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCC
Confidence 445556666666789999999999999888889999999999999988653332 23444444333 68999999999
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|+.
T Consensus 137 D~~ 139 (665)
T 2dy1_A 137 DKG 139 (665)
T ss_dssp GGC
T ss_pred chh
Confidence 986
No 173
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.39 E-value=1.7e-13 Score=108.58 Aligned_cols=117 Identities=18% Similarity=0.100 Sum_probs=77.8
Q ss_pred cceeeeeeCCeEEEEEEEeCCC--------chhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAG--------QERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G--------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
.......++..+..+.+||||| ++++...+..+++++|++|+|+|..+..+. ...++..+.. ..+.|+
T Consensus 59 ~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~--~~~~pv 134 (456)
T 4dcu_A 59 RDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILY--RTKKPV 134 (456)
T ss_dssp --CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHT--TCCSCE
T ss_pred eeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHH--HcCCCE
Confidence 3344555666667899999999 777777888899999999999998764322 2233333322 247899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++|+||+|+..... ...++. .++ -..+++||.+|.|+.++++++...+.
T Consensus 135 ilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 135 VLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp EEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred EEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 99999999864321 111111 123 25789999999999999999987654
No 174
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.38 E-value=3.1e-12 Score=92.98 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=74.1
Q ss_pred eEEEEEEEeCCCc-----------hhhcccchhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 18 TRTLIVIWDTAGQ-----------ERFRTITSSYYRGAHGIIVVYDCTDQET--FNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 18 ~~~~l~l~Dt~G~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
.+..+.||||||. +.+...+..++.++|++|+|+|+++... ...+..+...+... ...|+++|+|
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~n 153 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFT 153 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEE
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEe
Confidence 3457899999994 3445555666778999999999876433 22222222222111 1369999999
Q ss_pred cCCCCCCcccC------HHHHHHHHHhcCCCEEEEeccCC-----CCHHHHHHHHHHHHHH
Q psy2646 85 KNDQTSKKAVD------YQVAKEYADHLKIPFLETSAKNG-----ANVEQAFLTMATEIKK 134 (168)
Q Consensus 85 K~Dl~~~~~v~------~~~~~~~~~~~~~~~~~vSa~~~-----~~i~~i~~~l~~~~~~ 134 (168)
|+|+.....+. .+.+..+.+..+..++.+++..+ .++.++|..+...+.+
T Consensus 154 K~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 154 RKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp CGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 99986544433 13466677778888888877654 5788888888776654
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.38 E-value=1.5e-12 Score=107.95 Aligned_cols=82 Identities=24% Similarity=0.261 Sum_probs=62.9
Q ss_pred ccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 5 LPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 5 ~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
.+|+......+..+.+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......|.. +... +.|+++++|
T Consensus 62 giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviN 137 (691)
T 1dar_A 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFAN 137 (691)
T ss_dssp -----CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEE
T ss_pred ccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEE
Confidence 456666666666667899999999999998888999999999999999998777666555543 3333 689999999
Q ss_pred cCCCCC
Q psy2646 85 KNDQTS 90 (168)
Q Consensus 85 K~Dl~~ 90 (168)
|+|+..
T Consensus 138 KiD~~~ 143 (691)
T 1dar_A 138 KMDKTG 143 (691)
T ss_dssp CTTSTT
T ss_pred CCCccc
Confidence 999864
No 176
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.37 E-value=2.8e-13 Score=100.62 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=62.3
Q ss_pred CCeEEEEEEEeCCCch-------hhcccc-------hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHH
Q psy2646 16 ERTRTLIVIWDTAGQE-------RFRTIT-------SSYYR-------------GAHGIIVVYDCTDQETFNNLKQWLEE 68 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~-------~~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~ 68 (168)
++..+.+.||||||.. .+..++ ..|+. .+|+++++++.+..........++..
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~ 140 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR 140 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence 4555799999999973 222222 33333 37899999977653211222234444
Q ss_pred HHHhcCCCCcEEEEEecCCCCCCcccCH--HHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 69 IDRYACDNVNKLLVGNKNDQTSKKAVDY--QVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 69 i~~~~~~~~piivv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+. .+.|+++|+||+|+.....+.. ..+.......+++++++||.++.|+.++++++...+
T Consensus 141 l~----~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 141 LH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HT----TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred Hh----ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 42 2689999999999865433221 233344556789999999999999999998887643
No 177
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.37 E-value=8.9e-13 Score=92.35 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=64.0
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRG----AHGIIVVYDCT-DQETFNNLKQWLEEIDRY----ACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl 88 (168)
..+.+.+|||||++.+...+..++.. +|++|+|||++ +.+++..+..|+..+... ...+.|+++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 45678999999999998888888876 89999999999 889999988888877443 2347999999999999
Q ss_pred CCCccc
Q psy2646 89 TSKKAV 94 (168)
Q Consensus 89 ~~~~~v 94 (168)
.+.+.+
T Consensus 169 ~~~~~~ 174 (193)
T 2ged_A 169 FTARPP 174 (193)
T ss_dssp TTCCCH
T ss_pred cCCCCH
Confidence 765443
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.34 E-value=1.2e-13 Score=112.56 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=58.6
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCc-E
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TF---NNLKQWLEEIDRYACDNVN-K 79 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-i 79 (168)
|+......+......+.||||||+++|...+..++..+|++|+|||+++.. .+ ......+..+... +.| +
T Consensus 242 Tid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~i 318 (592)
T 3mca_A 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEI 318 (592)
T ss_dssp -----------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCE
T ss_pred eEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeE
Confidence 444555556666788999999999999888888999999999999998532 11 1112222222222 455 9
Q ss_pred EEEEecCCCCCCcccC----HHHHHHHH-HhcCC-----CEEEEeccCCCCHH
Q psy2646 80 LLVGNKNDQTSKKAVD----YQVAKEYA-DHLKI-----PFLETSAKNGANVE 122 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~----~~~~~~~~-~~~~~-----~~~~vSa~~~~~i~ 122 (168)
|+++||+|+.+..... ..+...+. ..+++ +++++||++|.|+.
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9999999986521111 12233344 44444 79999999999997
No 179
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.33 E-value=6.2e-12 Score=92.06 Aligned_cols=130 Identities=11% Similarity=0.051 Sum_probs=80.8
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCc--------hhhcccchhhh----cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhc
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQ--------ERFRTITSSYY----RGAHGIIVVYDCTDQET-FNNLKQWLEEIDRYA 73 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~--------~~~~~~~~~~~----~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~ 73 (168)
|.......+...+..+.||||||. +++......++ .++|++|+|+|+++... ...+..++..+....
T Consensus 57 T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~ 136 (247)
T 3lxw_A 57 TRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGED 136 (247)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGG
T ss_pred cccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChh
Confidence 444444444445577999999996 33322222333 89999999999985321 122223333332111
Q ss_pred CCCCcEEEEEecCCCCCCcccC------HHHHHHHHHhcCCCEEEEeccC-----CCCHHHHHHHHHHHHHHHh
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVD------YQVAKEYADHLKIPFLETSAKN-----GANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~~~vSa~~-----~~~i~~i~~~l~~~~~~~~ 136 (168)
..+.|+++++||.|+....... ...+..+.+..+..++.+++.. +.|+.++++.+.+.+.+..
T Consensus 137 ~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 137 VLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 2268999999999996532110 1235667777787777776655 4789999999888776543
No 180
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.33 E-value=3.2e-13 Score=101.06 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=75.1
Q ss_pred EEEEEEeCCCch-------------hhcccchhhhcCCcEEE-EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 20 TLIVIWDTAGQE-------------RFRTITSSYYRGAHGII-VVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 20 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
..+.||||||.. .+..++..|++.++++| +|+|+++..+..+...++..+. ..+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence 579999999963 34556778888998777 6899987544333334444443 236899999999
Q ss_pred CCCCCCcccCHHHHHHHHHhc--C-CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHL--K-IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~--~-~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+|+.................. + .+++++||+++.|++++|+++.....
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 999764332222211100011 2 36789999999999999999987443
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.33 E-value=8.3e-12 Score=100.51 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=58.9
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......++.+.+.+.||||||+.+|...+..+++.+|++|+|+|+++..... ...++..+. ..+.|+++++||+
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~ 144 (529)
T 2h5e_A 69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKL 144 (529)
T ss_dssp -CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECT
T ss_pred ceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCc
Confidence 334445556666788999999999999888888999999999999998753222 222333332 2378999999999
Q ss_pred CCCC
Q psy2646 87 DQTS 90 (168)
Q Consensus 87 Dl~~ 90 (168)
|+..
T Consensus 145 Dl~~ 148 (529)
T 2h5e_A 145 DRDI 148 (529)
T ss_dssp TSCC
T ss_pred CCcc
Confidence 9864
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.31 E-value=1.6e-11 Score=101.92 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=54.4
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
.+.+.||||||+.+|...+..+++.+|++|+|||+++.........|. .... .+.|+++++||+|+..
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence 389999999999999888899999999999999999875544444343 2322 3689999999999853
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.27 E-value=2.3e-11 Score=100.82 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=61.5
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..+.+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......|.. +... +.|+++++||+
T Consensus 62 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~ 137 (693)
T 2xex_A 62 TITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKM 137 (693)
T ss_dssp --CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECT
T ss_pred eEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECC
Confidence 4444455555556889999999999998888899999999999999998766665555443 4333 68999999999
Q ss_pred CCCC
Q psy2646 87 DQTS 90 (168)
Q Consensus 87 Dl~~ 90 (168)
|+..
T Consensus 138 Dl~~ 141 (693)
T 2xex_A 138 DKLG 141 (693)
T ss_dssp TSTT
T ss_pred Cccc
Confidence 9864
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.26 E-value=1.9e-12 Score=99.66 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=77.9
Q ss_pred EEEEEEEeCCCchhh-------------cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 19 RTLIVIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
...+.||||||..++ ..+...|++++|++|+++|..+.+... ..|+..+......+.|+++|+||
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeC
Confidence 346899999998776 445678899999999999876543221 23344443333446899999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+|+.............+...++.+|+++++.++.++++.+........
T Consensus 213 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~ 260 (360)
T 3t34_A 213 IDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR 260 (360)
T ss_dssp GGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHH
T ss_pred CccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHH
Confidence 999765444434343344456789999999999888776655444433
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.25 E-value=1.4e-11 Score=102.12 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=79.2
Q ss_pred EEEEEeCCCchhh---cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 21 LIVIWDTAGQERF---RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 21 ~l~l~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.+.||||||.... ...+..+++.+|++|+|+|++++.+..+...|...+.. .+.|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 5899999997653 34556788999999999999988777776666544432 26789999999998643311110
Q ss_pred ----------HHHH-----HHHh--------cCCCEEEEecc--------------CCCCHHHHHHHHHHHHHH
Q psy2646 98 ----------VAKE-----YADH--------LKIPFLETSAK--------------NGANVEQAFLTMATEIKK 134 (168)
Q Consensus 98 ----------~~~~-----~~~~--------~~~~~~~vSa~--------------~~~~i~~i~~~l~~~~~~ 134 (168)
.... +... ...+++++||+ ++.|+.+++..+...+..
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 1111 12479999999 999999999999887754
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.24 E-value=8.4e-11 Score=92.00 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=82.9
Q ss_pred EEEEEEeCCCchh----hcccchhh---hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCC
Q psy2646 20 TLIVIWDTAGQER----FRTITSSY---YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 20 ~~l~l~Dt~G~~~----~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~ 90 (168)
..+.+||+||..+ +..+...+ +..++.+++++|++ ..++..+..|..++..+. ....|.++++||+|+..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 5689999999743 22233333 45799999999998 556777776666664432 12578999999999875
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
. .............+++++.+||.++.|++++++++.+.+.....
T Consensus 284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 4 22233444555567899999999999999999999998876443
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.15 E-value=6.4e-11 Score=89.20 Aligned_cols=113 Identities=16% Similarity=0.200 Sum_probs=70.2
Q ss_pred EEEEEEEeCCCchh-------------hcccchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 19 RTLIVIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
...+.||||||..+ +...+..+++.+|++++|+|..+.. .......+...+. ..+.|+++|+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~N 206 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVIT 206 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEc
Confidence 35799999999753 4455677899999999999974332 1111122333332 23689999999
Q ss_pred cCCCCCCcccCHHHHHHHHHhcCCCEEEEeccC------CCCHHHHHHHHHHHHHH
Q psy2646 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKN------GANVEQAFLTMATEIKK 134 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~------~~~i~~i~~~l~~~~~~ 134 (168)
|+|+.................++..++++++.+ +.|+.++++.+...+..
T Consensus 207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 999875443221222110012225666666544 68889998888777653
No 188
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.14 E-value=9.7e-11 Score=86.31 Aligned_cols=87 Identities=15% Similarity=0.008 Sum_probs=58.7
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhc---------CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCC-
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYR---------GAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACD- 75 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---------~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~- 75 (168)
|.......+...+..+.||||||++++....+.+++ ++|++++|++++... +... ..|+..+......
T Consensus 71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~ 149 (262)
T 3def_A 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKE 149 (262)
T ss_dssp CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGG
T ss_pred ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchh
Confidence 344444445445568999999999887766555554 789999999998654 3322 3566666544222
Q ss_pred -CCcEEEEEecCCCCCCccc
Q psy2646 76 -NVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 76 -~~piivv~nK~Dl~~~~~v 94 (168)
..|+++|+||+|+...+..
T Consensus 150 ~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 150 IWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp GGGGEEEEEECTTCCCSTTC
T ss_pred hhcCEEEEEeCcccCCCCCc
Confidence 2499999999998644333
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.11 E-value=3.4e-10 Score=91.51 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=62.6
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+.+..+.+..+++.+.|.||||+..|..-....++-+|++|+|+|+...-.-+....| ....+. ++|.++++||+
T Consensus 87 TI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~ 162 (548)
T 3vqt_A 87 SVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKM 162 (548)
T ss_dssp -CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECT
T ss_pred cEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecc
Confidence 45566777777888999999999999988888899999999999999976444443444 333333 69999999999
Q ss_pred CCCC
Q psy2646 87 DQTS 90 (168)
Q Consensus 87 Dl~~ 90 (168)
|...
T Consensus 163 Dr~~ 166 (548)
T 3vqt_A 163 DREA 166 (548)
T ss_dssp TSCC
T ss_pred cchh
Confidence 9753
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.11 E-value=3.4e-10 Score=80.14 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=71.9
Q ss_pred EEEEEeCCCchh----------hcccchhhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 21 LIVIWDTAGQER----------FRTITSSYY---RGAHGIIVVYDCTDQETFNN--LKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 21 ~l~l~Dt~G~~~----------~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK 85 (168)
.+.+|||||... +......++ ..++++++++|+++..++.+ +..|+ .. .+.|+++++||
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTK 146 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEEC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEec
Confidence 478999999742 222233344 57899999999987654432 22222 22 26899999999
Q ss_pred CCCCCCc--ccCHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 86 NDQTSKK--AVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 86 ~Dl~~~~--~v~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+|+.+.. +.....+..++...+ +.++++||+++.|++++++++.+.+.
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 9986532 111234445555443 57889999999999999999987653
No 191
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.10 E-value=2.1e-10 Score=84.15 Aligned_cols=109 Identities=16% Similarity=0.034 Sum_probs=68.7
Q ss_pred EEEEEEeCCCchhhcccch------hhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 20 TLIVIWDTAGQERFRTITS------SYYRGAHGIIVVYDCTDQE---TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+.+.||||||+.++..... ..+.. +++|+++|+.... .+.....+...... ..+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5799999999976543322 24456 8899999876432 22222111111111 12689999999999865
Q ss_pred CcccCHHHHHH----------------------------HHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKE----------------------------YADHLK--IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 91 ~~~v~~~~~~~----------------------------~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
...+ .+... ++..++ .+++++||+++.|++++++++.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 4321 11111 122333 48999999999999999999987764
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.09 E-value=1.2e-10 Score=83.30 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=69.7
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
...+.+|||+|+..... .+....+.+++|+|+++.... ...+... . +.|+++++||+|+.........+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHH
Confidence 35788999999511111 112357889999998765321 1111111 1 47899999999986432234455
Q ss_pred HHHHHHhc--CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 99 AKEYADHL--KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 99 ~~~~~~~~--~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
........ +.+++++||++|.|++++|+++...+...
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 55555443 47899999999999999999999877554
No 193
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=2.7e-10 Score=87.96 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=72.4
Q ss_pred CchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHH----HHHH
Q psy2646 29 GQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAK----EYAD 104 (168)
Q Consensus 29 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~----~~~~ 104 (168)
..++|..++..+++.++++++|+|+++++ ..|...+.+. ..+.|+++|+||+|+.... ...+... .+++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF-VGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH-SSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH-hCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788899999999999999999999853 3344455444 2378999999999996532 2333333 3355
Q ss_pred hcCC---CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 105 HLKI---PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 105 ~~~~---~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..++ +++++||++|.|++++++.+....
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6676 799999999999999999987643
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.07 E-value=3.5e-11 Score=90.55 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=66.0
Q ss_pred CeEEEEEEEeCCCc-------hhhcccch-------hhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHH
Q psy2646 17 RTRTLIVIWDTAGQ-------ERFRTITS-------SYYRG-------------AHGIIVVYDCTDQETFNNLKQWLEEI 69 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~i 69 (168)
+....+.+|||+|. +.+..+.. .+++. +++++++.+.+.. +++... ...+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l 149 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFM 149 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHH
Confidence 44568999999998 55555544 44433 3446666654321 122222 1223
Q ss_pred HHhcCCCCcEEEEEecCCCCCCccc--CHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 70 DRYACDNVNKLLVGNKNDQTSKKAV--DYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 70 ~~~~~~~~piivv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
... ....|+++|+||.|+...+++ ..+++.++++.++++++++||+++ |++++|.++.+.+....+
T Consensus 150 ~~l-~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 150 KAI-HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHH-TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHH-HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 232 246799999999999764433 235677788888999999999999 999999999998875543
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.05 E-value=7.5e-11 Score=90.64 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=71.7
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.++.+.||||||... .....+..+|++++|+|.+..+.+..+. .. ....|+++|+||+|+.+..... .
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---~~-----~~~~p~ivVlNK~Dl~~~~~~~-~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---KG-----VLELADIVVVNKADGEHHKEAR-L 237 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---TT-----SGGGCSEEEEECCCGGGHHHHH-H
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---Hh-----HhhcCCEEEEECCCCcChhHHH-H
Confidence 346799999999532 2233468999999999987654432221 00 1246899999999986432221 1
Q ss_pred HHHHHHH----------hcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 98 VAKEYAD----------HLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 98 ~~~~~~~----------~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
....+.. .++.+++++||++|.|++++++++.+.+...
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 1112221 1257899999999999999999999887653
No 196
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.00 E-value=9.2e-10 Score=81.37 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=55.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchh-------h--hcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCC--C
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSS-------Y--YRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDN--V 77 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~-------~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~--~ 77 (168)
.....++.....+.||||||..++..+... + ...+|++++|+|++.. ++.. ...|+..+......+ .
T Consensus 77 ~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~ 155 (270)
T 1h65_A 77 PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWN 155 (270)
T ss_dssp CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGG
T ss_pred eEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCccccc
Confidence 334445555678999999999776543321 1 3479999999998753 2332 235666664432222 6
Q ss_pred cEEEEEecCCCCCCcccC
Q psy2646 78 NKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~ 95 (168)
|+++|+||+|+......+
T Consensus 156 ~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 156 KAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp GEEEEEECCSCCCGGGCC
T ss_pred CEEEEEECcccCCcCCCC
Confidence 999999999997654433
No 197
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=5.2e-10 Score=87.16 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=32.7
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~ 126 (168)
.+|+++++||.|+.... ......+.....+.+++++||..+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~~~--~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASDE--QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCHH--HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccchH--HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 48999999999986211 11222222222367899999999998876543
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.99 E-value=4.6e-10 Score=94.90 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=58.9
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
++..+.+.||||||+.+|...+..+++.+|++|+|||+++..++.....|.... . .+.|+++++||+|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 345889999999999999999999999999999999999987777765555433 2 368999999999985
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=8.2e-10 Score=85.27 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHH----HH
Q psy2646 28 AGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKE----YA 103 (168)
Q Consensus 28 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~----~~ 103 (168)
..+++|..++..++..++++++|+|++++++ .|...+.+. ..+.|+++|+||+|+.... ...+...+ +.
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 3578899999999999999999999998763 233333333 2368999999999996542 22233333 34
Q ss_pred HhcCC---CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 104 DHLKI---PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 104 ~~~~~---~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+..++ +++.+||++|.|++++++.+....
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55665 689999999999999999887654
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.90 E-value=1e-09 Score=90.29 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=61.3
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+.+....+..+++.+.|.||||+.+|..-....++-+|++|+|+|+...-.-+. ...+...... ++|.++++||+
T Consensus 54 TI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKm 129 (638)
T 3j25_A 54 TIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKI 129 (638)
T ss_dssp CSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEEC
T ss_pred cEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEecc
Confidence 4556667777888899999999999998888889999999999999987533232 2333334444 68999999999
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|..
T Consensus 130 Dr~ 132 (638)
T 3j25_A 130 DQN 132 (638)
T ss_dssp CSS
T ss_pred ccc
Confidence 974
No 201
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.89 E-value=1e-10 Score=89.79 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=66.8
Q ss_pred EEEEEEEeCCCch-------------hhcccchhhhcCCcEEEE-EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 19 RTLIVIWDTAGQE-------------RFRTITSSYYRGAHGIIV-VYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 19 ~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
...+.||||||.. .+..+...|+..++.+|+ ++|++....-.+...++..+ ...+.|+++|+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~---~~~~~~~i~V~N 205 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV---DPQGQRTIGVIT 205 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH---CTTCTTEEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh---CcCCCceEEEec
Confidence 3579999999963 345566778877765555 55655422212222233333 234789999999
Q ss_pred cCCCCCCcccCHHHHHH--HHHhcC-CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 85 KNDQTSKKAVDYQVAKE--YADHLK-IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~--~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
|+|+............. +...++ .+++++||+++.|++++++++..
T Consensus 206 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 206 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99997543311111110 000123 25678999999999999999876
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.86 E-value=2e-09 Score=82.23 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=66.6
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH--
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY-- 96 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~-- 96 (168)
++.+.||||||..... ......+|++++|+|++..+.+..+.. .. . +.|.++|+||+|+.+...+..
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~---~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL--M---EVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH--H---HHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh--h---cccCEEEEECCCCCChHHHHHHH
Confidence 4679999999975433 235689999999999976533221111 11 1 357899999999865322211
Q ss_pred HHHHHHHHh-------cCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 97 QVAKEYADH-------LKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 97 ~~~~~~~~~-------~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
.+....... +..+++++||++|.|++++++++.+.+..
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 112221111 13578999999999999999999987753
No 203
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=6.7e-09 Score=77.36 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=68.7
Q ss_pred EEeCCCch-hhcccchhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHH
Q psy2646 24 IWDTAGQE-RFRTITSSYYRGAHGIIVVYDCTDQETFN--NLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAK 100 (168)
Q Consensus 24 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~ 100 (168)
+-..||+. .........++.+|++++|+|+.++.+.. .+..|+ .+.|.++|+||+|+..... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 44567875 33334456789999999999999986654 233322 3689999999999965321 12223
Q ss_pred HHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 101 EYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 101 ~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.+.+..+++++++||.++.|+.++++.+...+...
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 34445578999999999999999999888777643
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=3.2e-09 Score=83.15 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=52.5
Q ss_pred EEEEEEeCCCchhhc-------c------------------cchhhhcCCc--EEEEEEeCCChhhHHHHH-HHHHHHHH
Q psy2646 20 TLIVIWDTAGQERFR-------T------------------ITSSYYRGAH--GIIVVYDCTDQETFNNLK-QWLEEIDR 71 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~-------~------------------~~~~~~~~~d--~~i~v~d~~~~~s~~~~~-~~~~~i~~ 71 (168)
..+.+||++|...+. . +...++.+++ +++|+.+.+. .++.... .|+..+.
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~- 165 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH- 165 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-
Confidence 478999999986531 1 1123445544 4555554431 1232222 4555552
Q ss_pred hcCCCCcEEEEEecCCCCCCcccCH--HHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 72 YACDNVNKLLVGNKNDQTSKKAVDY--QVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 72 ~~~~~~piivv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
.+.|+|+|+||+|+...+.+.. ..+...+..++++++++|+.++.++.++|..+...
T Consensus 166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 3689999999999876555543 45666777789999999999999999887776643
No 205
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.68 E-value=3.9e-07 Score=70.00 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=30.6
Q ss_pred CCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccC
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKN 117 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~ 117 (168)
...|+++++|+.|..-........+..++...+.+++++||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 3589999999998642112223556677777788999999764
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.68 E-value=1.1e-07 Score=79.04 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=53.6
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
+.+.+.|.||||+-.|..-....++-+|++|+|+|+...-.-+...-|.. ..+. ++|.++++||+|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEcccccc
Confidence 46899999999999998877888999999999999987644333333333 3333 68999999999974
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.67 E-value=1.2e-07 Score=72.70 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
++.+.|+||+|... ........+|.+++|+|++..+....+. ..+ ...|.++++||+|+.+..... ..
T Consensus 166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i-----l~~~~ivVlNK~Dl~~~~~~~-~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIK---RGI-----IEMADLVAVTKSDGDLIVPAR-RI 233 (349)
T ss_dssp TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HH
T ss_pred CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhH---HHH-----HhcCCEEEEeeecCCCchhHH-HH
Confidence 45789999999631 1234578899999999998654322111 111 146889999999985321110 11
Q ss_pred HHHHHH----------hcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 99 AKEYAD----------HLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 99 ~~~~~~----------~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
...+.. .+..+++.+||+++.|++++++++...+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 112211 124578999999999999999999887643
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.63 E-value=9.9e-09 Score=83.04 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=52.8
Q ss_pred EEEEEeCCCchh-----------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 21 LIVIWDTAGQER-----------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 21 ~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.||||||... |...+..++..+|++|+|+|+++.........|+..+... +.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---EDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---GGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---CCCEEEEEECCCcc
Confidence 589999999864 4455667889999999999998754445555666655332 57999999999987
Q ss_pred CCcc
Q psy2646 90 SKKA 93 (168)
Q Consensus 90 ~~~~ 93 (168)
....
T Consensus 232 ~~~e 235 (550)
T 2qpt_A 232 ETQQ 235 (550)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5433
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.56 E-value=1.6e-08 Score=84.30 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=68.9
Q ss_pred EEEEEeCCCchh-------------hcccchhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 21 LIVIWDTAGQER-------------FRTITSSYY-RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 21 ~l~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
++.|+||||... +..+...|+ ..+|++++|+|++....-.+...++..+. ..+.|+++|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence 578999999643 222334455 57899999999986533233323444443 2368999999999
Q ss_pred CCCCCcccCHHHHHHHHHh----cC-CCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 87 DQTSKKAVDYQVAKEYADH----LK-IPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~----~~-~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
|+........... . .+. ++ .+++.+||++|.|++++++++...
T Consensus 228 Dlv~~~~~~~~il-~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVL-E-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHH-T-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHH-H-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 9876443322111 1 111 12 356789999999999999988763
No 210
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.44 E-value=1.1e-06 Score=67.71 Aligned_cols=51 Identities=12% Similarity=0.020 Sum_probs=35.5
Q ss_pred CCcEEEEEecCCCC--CC-cccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHH
Q psy2646 76 NVNKLLVGNKNDQT--SK-KAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 76 ~~piivv~nK~Dl~--~~-~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~ 126 (168)
..|+++++||.|.. .. +......+..+++..+.+++++||+...++.++.+
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG 254 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence 47999999999742 21 12234556677777789999999988665555443
No 211
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.42 E-value=1.5e-07 Score=70.87 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=61.1
Q ss_pred cccchhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc--CHHHHHHHHHhcCCCE
Q psy2646 34 RTITSSYYRGAHGIIVVYDCTDQET-FNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV--DYQVAKEYADHLKIPF 110 (168)
Q Consensus 34 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~ 110 (168)
+.+.+..++++|.+++|+|+.++.. ...+..++.... ..++|.++|+||+|+...... .......+....++++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 4455667899999999999997643 334444444332 236889999999999764220 0122333444557899
Q ss_pred EEEeccCCCCHHHHHH
Q psy2646 111 LETSAKNGANVEQAFL 126 (168)
Q Consensus 111 ~~vSa~~~~~i~~i~~ 126 (168)
+.+||.++.|+++++.
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999999988776554
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.41 E-value=7.7e-07 Score=67.83 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=64.0
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
+.++.|+||+|...- .......+|.+++++|+...+....+.. .+. ..|.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKK---GIF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCT---THH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHH---HHh-----ccccEEEEEchhccCchhHHHHH
Confidence 467999999997431 1234578999999999875432211111 111 23567778999975322221111
Q ss_pred HHHHHH----------hcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 99 AKEYAD----------HLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 99 ~~~~~~----------~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
...+.. .+..+++.+||+++.|++++++.+.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222221 12457899999999999999999988764
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.37 E-value=1.8e-07 Score=68.95 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=59.9
Q ss_pred CCCchhh-cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHh
Q psy2646 27 TAGQERF-RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADH 105 (168)
Q Consensus 27 t~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~ 105 (168)
-||+... .......++++|+++.|+|+.++.+..... +. + . +.|.++|+||+|+..... .+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 3565422 123355788999999999999886543211 11 1 1 689999999999975321 1222334445
Q ss_pred cCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 106 LKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 106 ~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
.++++ .+||.++.|++++++.+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999998887654
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.32 E-value=4e-07 Score=64.99 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=46.4
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhc--CCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHL--KIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
..|.++++||+|+.+......++...++..+ +.+++++||++|.|++++|+++.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 4688999999998654334556666666543 5789999999999999999999987754
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.18 E-value=8.5e-06 Score=62.48 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC-HHHHHHHHHhcCCCEEEEeccC
Q psy2646 40 YYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD-YQVAKEYADHLKIPFLETSAKN 117 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~-~~~~~~~~~~~~~~~~~vSa~~ 117 (168)
.+.++|.+++|.+.. |. +...+..++...... +.|.++|+||+|+....... .+.........|++++.+||.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 368999999886654 43 344455555444333 67889999999997542200 1112223345688999999999
Q ss_pred CCCHHHHHHHH
Q psy2646 118 GANVEQAFLTM 128 (168)
Q Consensus 118 ~~~i~~i~~~l 128 (168)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99998877643
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0002 Score=55.27 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=64.7
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcc----cc---hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRT----IT---SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CDNV 77 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~ 77 (168)
|+......+...+.+++|.||||.-+-.. +. -..++.+|++++|+|++++. .+...+...+.... ..+.
T Consensus 106 T~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k 183 (376)
T 4a9a_A 106 TLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKT 183 (376)
T ss_dssp CCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCC
T ss_pred eeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccC
Confidence 44444444444556899999999743211 11 23467899999999999863 23333333332221 2357
Q ss_pred cEEEEEecCCCCC--------CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHH
Q psy2646 78 NKLLVGNKNDQTS--------KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125 (168)
Q Consensus 78 piivv~nK~Dl~~--------~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~ 125 (168)
|.+++.||.|... ...++.++...+...+.+..-++-...+...+++.
T Consensus 184 ~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~ 239 (376)
T 4a9a_A 184 PPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLI 239 (376)
T ss_dssp CCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHH
T ss_pred ChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHH
Confidence 8899999999642 12244555555555544432222223333444443
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.34 E-value=0.00019 Score=57.48 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=61.9
Q ss_pred eEEEEEEEeCCCchhhc-ccchh---h--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCC
Q psy2646 18 TRTLIVIWDTAGQERFR-TITSS---Y--YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQTS 90 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~ 90 (168)
..+.+.|+||||..... .++.. . +..+|.+++|+|+...... ......+.. ..|+ ++|+||.|...
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTKLDGHA 254 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEECTTSCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeCCcccc
Confidence 34679999999975321 11111 1 2278999999999865321 112222322 1564 89999999864
Q ss_pred CcccCHHHHHHHHHhcCCCE------------------EEEeccCCCC-HHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPF------------------LETSAKNGAN-VEQAFLTMATE 131 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~------------------~~vSa~~~~~-i~~i~~~l~~~ 131 (168)
.... ........+.|+ +.+|+..|.| +.++++++...
T Consensus 255 ~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred chHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 3221 112233334443 3468888988 98888888755
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.67 E-value=0.029 Score=43.42 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCCC-C-CcccCHHHHHHHHHhcC--CCEEEEeccC
Q psy2646 76 NVNKLLVGNKNDQT-S-KKAVDYQVAKEYADHLK--IPFLETSAKN 117 (168)
Q Consensus 76 ~~piivv~nK~Dl~-~-~~~v~~~~~~~~~~~~~--~~~~~vSa~~ 117 (168)
..|+++++|+.|.. . ...--...+.+++...+ .+++.+||..
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 48999999999832 1 11112355666776665 7899999886
No 219
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.63 E-value=0.00094 Score=51.82 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=24.1
Q ss_pred EEEEEEeCCCchhhcc-------cchhhhcCCcEEEEEEeCCCh
Q psy2646 20 TLIVIWDTAGQERFRT-------ITSSYYRGAHGIIVVYDCTDQ 56 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~d~~~~ 56 (168)
..++||||||..++.+ .+..+++++|++++|+|+.+.
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 3599999999876543 345678999999999999754
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.09 E-value=0.021 Score=44.88 Aligned_cols=90 Identities=20% Similarity=0.136 Sum_probs=53.9
Q ss_pred EEEEEEeCCCchhhcc-----cch-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q psy2646 20 TLIVIWDTAGQERFRT-----ITS-SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 93 (168)
+.+.|+||+|...... +.. .....+|.+++|+|+...... ......+... -.+..+|.||.|.....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~~~g- 255 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGSAKG- 255 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSCSSH-
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCcccc-
Confidence 6789999999643211 111 123357999999999864322 2222333222 24557999999975432
Q ss_pred cCHHHHHHHHHhcCCCEEEEeccCCCCH
Q psy2646 94 VDYQVAKEYADHLKIPFLETSAKNGANV 121 (168)
Q Consensus 94 v~~~~~~~~~~~~~~~~~~vSa~~~~~i 121 (168)
-.+..+....+.|+.+++. |+++
T Consensus 256 ---G~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 256 ---GGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp ---HHHHHHHHTTCCCEEEEEC--SSST
T ss_pred ---cHHHHHHHHHCCCEEEEEc--CCCh
Confidence 2234455567899988885 5544
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.72 E-value=0.031 Score=41.56 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCchh--hcc-cch-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q psy2646 19 RTLIVIWDTAGQER--FRT-ITS-----SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQT 89 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~ 89 (168)
.+.+.|.||||... ... +.. ..+..+|.+++|+|+.... +.......+.. ..| ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 45789999999765 211 111 1245789999999987432 22222222221 355 67899999974
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 123 (168)
.. ......+....+.|+.+++ .|+++++
T Consensus 253 ~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 AK----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp TT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred cc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 32 2234456677789998887 5666644
No 222
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.70 E-value=0.031 Score=38.56 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=54.0
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCcccCHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
+.+.|+|+|+.. .......+..+|.+|+++..+... ..+..++..+.... .++.++.+|.|+.|.... .. .
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~~-~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--ML-N 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--EE-H
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--HH-H
Confidence 678999999865 333455677799999999877543 56666666664432 335788999999984321 22 2
Q ss_pred HHHHHHHhcCCCEE
Q psy2646 98 VAKEYADHLKIPFL 111 (168)
Q Consensus 98 ~~~~~~~~~~~~~~ 111 (168)
+..++.+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 33344444554443
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.30 E-value=0.14 Score=36.30 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=58.4
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
.+.+.|+|+|+.. .......+..+|.+|+++..+ ..+...+..++..+.........+.+|.|+.+.... ...
T Consensus 118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~--~~~-- 190 (245)
T 3ea0_A 118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR--ITS-- 190 (245)
T ss_dssp HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT--SCH--
T ss_pred hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC--CCH--
Confidence 4678999999864 234455677899999998775 556777777777775543334568899999985432 332
Q ss_pred HHHHHHhcCCCEEEE
Q psy2646 99 AKEYADHLKIPFLET 113 (168)
Q Consensus 99 ~~~~~~~~~~~~~~v 113 (168)
..+.+.++.+++..
T Consensus 191 -~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 191 -DEIEKVIGRPISKR 204 (245)
T ss_dssp -HHHHHHHTSCEEEE
T ss_pred -HHHHHHhCCCeEEE
Confidence 23445567777654
No 224
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.24 E-value=0.15 Score=37.65 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEE-EEEecCCCCCCcccCH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKL-LVGNKNDQTSKKAVDY 96 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-vv~nK~Dl~~~~~v~~ 96 (168)
.+.+.|+|+|+..... .....+..+|.+|+++..+ ..++..+..++..+.... ..+.+++ +|.|+.+-.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 4678999998754311 1234578899999998665 456677777777765432 2356654 899999831
Q ss_pred HHHHHHHHhcCCCEEE
Q psy2646 97 QVAKEYADHLKIPFLE 112 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~ 112 (168)
.....+.+.++.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 2344455556665553
No 225
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.00 E-value=0.13 Score=35.89 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCc-hhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 19 RTLIVIWDTAGQ-ERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 19 ~~~l~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.+.+.|.|+|+. .. ......+..+|.+|+++..+ ..+...+..++..+.... +.++.++.|+.|..... . ..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~-~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK-D-GD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC-H-HH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch-H-HH
Confidence 456889999986 42 23345677899999998776 445666666666665532 46789999999854311 1 23
Q ss_pred HHHHHHHhcCCCEE
Q psy2646 98 VAKEYADHLKIPFL 111 (168)
Q Consensus 98 ~~~~~~~~~~~~~~ 111 (168)
+..+..+.++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 34444444665544
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.67 E-value=0.0029 Score=48.61 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=51.5
Q ss_pred EEEEeCCCchhhcccc-------hhhh---cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 22 IVIWDTAGQERFRTIT-------SSYY---RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~~-------~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
+.++||||......+. ...+ +..+.++++++.....-+..+.. +......+.|+++++||.|....
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccc
Confidence 7899999964322111 1122 67899999998843211111100 11111346899999999997643
Q ss_pred cccCHHHHHHHHHhcCCCEEEEeccCCCC
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSAKNGAN 120 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa~~~~~ 120 (168)
.... .....+.+..+..+.+.++....+
T Consensus 290 ~~~~-~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 290 TKLE-KADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp EEGG-GHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred ccHH-HHHHHHHHhcCCccCCCCchhhhh
Confidence 3332 223345555666555555554333
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.46 E-value=0.11 Score=40.84 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=54.0
Q ss_pred EEEEEEEeCCCchh--hcc-----cch-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQER--FRT-----ITS-SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~--~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
.+.+.|.||||... ... +.. ......+.+++|+|+....... .....+... -.+..++.||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEecccccc
Confidence 46788999999643 111 111 0122468999999998643222 222333322 245789999999753
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANV 121 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i 121 (168)
.- -.+..+....+.|+.+++. |+++
T Consensus 253 ~~----G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 KG----GGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp CH----HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred cc----hHHHHHHHHHCCCEEEEEC--CCCh
Confidence 21 2334455567899988885 6554
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.26 E-value=0.17 Score=39.58 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=49.0
Q ss_pred eEEEEEEEeCCCchhhcc-cch-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRT-ITS-----SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV-N-KLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iivv~nK~Dl~ 89 (168)
..+.+.|+||||...... +.. ..+..+|.+++|+|+..... .......+ .... | ..+|.||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~----~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF----KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH----HTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH----hhcccCCeEEEEeCCCCc
Confidence 446789999999754211 111 11236899999999875431 22222222 1234 5 89999999975
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEE
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLET 113 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~v 113 (168)
... .....+....+.++.++
T Consensus 252 ~~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 252 AKG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp STT----HHHHHHHHHSSCCEEEE
T ss_pred cch----HHHHHHHHHHCCCEEEe
Confidence 321 12334555667776665
No 229
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.01 E-value=0.17 Score=36.35 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=44.4
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hcCCCCcEE-EEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR---YACDNVNKL-LVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~pii-vv~nK~Dl~ 89 (168)
..+.+.|+|+|+... ......+..+|.+|+++..+. .++..+..++..+.. ....+.+++ +|.|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 456799999998642 222345667999999998874 344544444444432 223456764 899999853
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.29 E-value=0.0027 Score=48.76 Aligned_cols=89 Identities=9% Similarity=0.076 Sum_probs=47.6
Q ss_pred EEEEeCCCchhhccc----chh----h--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 22 IVIWDTAGQERFRTI----TSS----Y--YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~----~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
+.++||||......+ ... + .+..+.++++++.....-+..+.. +......+.|+++++||.|....
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccc
Confidence 789999997533211 111 1 356788999998743211111100 11111346899999999997653
Q ss_pred cccCHHHHHHHHHhcCCCEEEEec
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSA 115 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa 115 (168)
... ......+.+..+..+++.++
T Consensus 289 ~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 289 TKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp EEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred ccH-HHHHHHHHHHhCCccCCCch
Confidence 332 12233345555654444443
No 231
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.01 E-value=0.22 Score=35.87 Aligned_cols=65 Identities=8% Similarity=-0.014 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
.+.+.|+|+|+.. .......+..+|.+|+++..+. .+...+..++..+... ..+.++.+|.|+.+
T Consensus 144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~-~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL-NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT-TCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH-hccCCEEEEEeccc
Confidence 4678999999864 2233456677999999998864 4566666666666544 34568889999994
No 232
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.61 E-value=0.15 Score=36.78 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=52.4
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCC----Cc
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL-LVGNKNDQTS----KK 92 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~----~~ 92 (168)
..+.+.|+|+|+......+....+..+|.+|+++..+. .+...+...+..+... +.+++ +|.|+.|... .+
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccc
Confidence 45779999999864211111112236899999987764 3455566556655433 56766 9999987411 11
Q ss_pred -cc-CHHHHHHHHHhcCCCEEE
Q psy2646 93 -AV-DYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 93 -~v-~~~~~~~~~~~~~~~~~~ 112 (168)
.+ .......+.+.++.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp ECTTCCCCHHHHHHHTTCSEEE
T ss_pred cccccccHHHHHHHHcCCCeEE
Confidence 01 111234566667777664
No 233
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.52 E-value=0.61 Score=33.32 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=52.7
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
.+.+.|+|+|+... ......+..+|.+|+++..+ ..+...+..++..+.... ...+.+|.|+.+..... ..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~----~~ 180 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGIE----MA 180 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTHH----HH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCccccc----ch
Confidence 35789999997543 23344577899999998765 445666666666665541 24566899999853321 23
Q ss_pred HHHHHHhcCCCEE
Q psy2646 99 AKEYADHLKIPFL 111 (168)
Q Consensus 99 ~~~~~~~~~~~~~ 111 (168)
...+.+.++.+++
T Consensus 181 ~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 181 KNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHTTSCEE
T ss_pred HHHHHHHhCCCeE
Confidence 3345555665544
No 234
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.33 E-value=0.58 Score=32.78 Aligned_cols=67 Identities=7% Similarity=-0.036 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
.+.+.|+|+|+... ......+..+|.+|+++..+ ..+...+..++..+.... ...+.+|.|+.+...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCccc
Confidence 46789999998643 23345678899999998765 446666666666665441 245678999998543
No 235
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.08 E-value=0.4 Score=33.76 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=45.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
..+.+.|+|+|+... ......+..+|.+|+++..+ ..++..+..+...+.... -..+.++.|+.+
T Consensus 130 ~~yD~viiD~pp~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIE--HLTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCT--TCCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCccc--HHHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence 346789999998643 24456678899999999875 456666666666554442 245789999987
No 236
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.83 E-value=0.34 Score=34.48 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc------CCCCcEEEEEecCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA------CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~piivv~nK~Dl 88 (168)
.+.+.|+|+|+... ......+..+|.+|++++.+ ..+...+..++..+.... .....+.+|.|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 56789999998532 34455677899999999775 456666666666663321 022577899999874
No 237
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.02 E-value=0.52 Score=34.47 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=41.9
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hcCCCCcE-EEEEecCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR---YACDNVNK-LLVGNKNDQT 89 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~pi-ivv~nK~Dl~ 89 (168)
.+.+.|+|+|+.... .....+..+|.+|+++..+. .+...+..++..+.. ....+.++ -+|.|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 467899999986432 12334556999999997753 234444444444422 22346674 5899999854
No 238
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.12 E-value=3.4 Score=32.08 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=56.4
Q ss_pred EEEEEeCCCchhhcccchhh-----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC------
Q psy2646 21 LIVIWDTAGQERFRTITSSY-----YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT------ 89 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~------ 89 (168)
.+.+||++|..........+ +...+..++ ++....+. ..+ .+...+... +.|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~k-qrv-~la~aL~~~---~~p~~lV~tkpdlllLDEPt 194 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKK-NDI-DIAKAISMM---KKEFYFVRTKVDSDITNEAD 194 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCH-HHH-HHHHHHHHT---TCEEEEEECCHHHHHHHHHT
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccH-HHH-HHHHHHHhc---CCCeEEEEecCcccccCccc
Confidence 47899999854211111122 233455555 77763211 111 122222222 68999999999862
Q ss_pred -CCcccCHHH----HHHHH----HhcC---CCEEEEec--cCCCCHHHHHHHHHHHH
Q psy2646 90 -SKKAVDYQV----AKEYA----DHLK---IPFLETSA--KNGANVEQAFLTMATEI 132 (168)
Q Consensus 90 -~~~~v~~~~----~~~~~----~~~~---~~~~~vSa--~~~~~i~~i~~~l~~~~ 132 (168)
.-......+ ...+. ...+ ..++.+|+ .++.|++++.+.+...+
T Consensus 195 sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 195 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 111112222 22232 1222 36788999 66667999888887665
No 239
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.74 E-value=0.57 Score=34.10 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=42.4
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL-LVGNKNDQT 89 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~ 89 (168)
.+.+.|+|+|+..... ........+|++|+|+..+. .+...+...+..+... +.+++ +|.|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcCC
Confidence 3578999999864321 11234567999999998864 2455555555555433 45665 889999853
No 240
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=88.45 E-value=1.3 Score=33.61 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=31.4
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI 69 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 69 (168)
.+.+.|+|+|+.- .......+..+|.+|+++..+ ..++..+..++..+
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l~~~l 200 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNLARWF 200 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHHHHHH
Confidence 5789999999753 233445667799999999776 34444444433333
No 241
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.61 E-value=5.6 Score=28.72 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=50.1
Q ss_pred EEEEEEEeCCCchhhcccc-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCc-EEEEEecCCCCCCcccC
Q psy2646 19 RTLIVIWDTAGQERFRTIT-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVN-KLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p-iivv~nK~Dl~~~~~v~ 95 (168)
.+.+.|+|+||......+. ......+|.+|+++..+ ..++..+..++..+.... ..+.+ .-+|.|+.+.. ..
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~ 192 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RE 192 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----TH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hH
Confidence 4779999999853222111 12235799999888765 445666666666554432 12455 45788998632 12
Q ss_pred HHHHHHHHHhcCCCEE
Q psy2646 96 YQVAKEYADHLKIPFL 111 (168)
Q Consensus 96 ~~~~~~~~~~~~~~~~ 111 (168)
......+.+.++.+++
T Consensus 193 ~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 193 DELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcCcccc
Confidence 2334445555565554
No 242
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=86.57 E-value=2.3 Score=31.20 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=43.8
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
.+.+.|+|+|+.-... -.......+|++|+|+..+.. +...+...+..+.... ...+-+|.|+.|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNG--IPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTT--CCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCC--CCEEEEEEcCccccc
Confidence 3568999999864321 123356679999999988743 3455555556554442 234578899998643
No 243
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.75 E-value=2.5 Score=31.11 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCchhhcc--cch----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRT--ITS----SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~--~~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
.+.+.|+||||...... +.. ...-.++.+++++|.... .+.......+... -...-+|.||.|....-
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~~~~~~~~~---~~i~givlnk~d~~~~~ 253 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK---VGVTGLVLTKLDGDARG 253 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHHHHHHHHHH---TCCCEEEEECGGGCSSC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHHHHHHHhhc---CCCCEEEEECCCCCccH
Confidence 35789999998643211 111 011248888999998632 1111112222211 12346789999964321
Q ss_pred ccCHHHHHHHHHhcCCCEEEEeccCCCCHH
Q psy2646 93 AVDYQVAKEYADHLKIPFLETSAKNGANVE 122 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 122 (168)
-....+....+.|+.+++ .|++++
T Consensus 254 ----g~~~~~~~~~~~pi~~i~--~g~~~~ 277 (295)
T 1ls1_A 254 ----GAALSARHVTGKPIYFAG--VSEKPE 277 (295)
T ss_dssp ----HHHHHHHHHHCCCEEEEC--------
T ss_pred ----HHHHHHHHHHCcCEEEEe--CCCCcc
Confidence 234456667789988877 444443
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.71 E-value=4.4 Score=30.03 Aligned_cols=92 Identities=26% Similarity=0.263 Sum_probs=50.8
Q ss_pred EEEEEEeCCCchhhcc-cc------hhhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 20 TLIVIWDTAGQERFRT-IT------SSYY-----RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
..+.|.||||...... +. ...+ ...+.+++|+|.... .+.+.. ...+... .+ ..-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VN-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SC-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CC-CCEEEEeCCC
Confidence 4588999999632111 00 1111 247889999998733 122221 1222222 12 2356789999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 123 (168)
-...-. .+..+....+.|+.+++ .|+.+++
T Consensus 261 ~~~~gG----~~l~~~~~~~~Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 261 GTAKGG----ITLAIARELGIPIKFIG--VGEKAED 290 (306)
T ss_dssp GCSCTT----HHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CccchH----HHHHHHHHHCCCEEEEe--CCCChhh
Confidence 643222 25566777789998887 4444444
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.41 E-value=2.5 Score=31.60 Aligned_cols=92 Identities=23% Similarity=0.312 Sum_probs=51.7
Q ss_pred EEEEEEEeCCCchhhcc-cc-h-----hh-----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-cEEEEEec
Q psy2646 19 RTLIVIWDTAGQERFRT-IT-S-----SY-----YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV-NKLLVGNK 85 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~~-~-----~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piivv~nK 85 (168)
.+.+.|.||||...... +. . .. -..+|.+++++++... .+.+.. +.... ... ..-+|.||
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~-~~~~i~GvVltk 263 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFS-KVADVSGIILTK 263 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHT-TTSCCCEEEEEC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHh-hcCCCcEEEEeC
Confidence 46789999999754211 10 0 01 1247899999998742 222222 22221 122 33578999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 123 (168)
.|-...- -.+..+....+.|+.++. .|+++++
T Consensus 264 ~d~~~~~----g~~~~~~~~~~~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 264 MDSTSKG----GIGLAIKELLNIPIKMIG--VGEKVDD 295 (320)
T ss_dssp GGGCSCT----THHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred CCCCCch----hHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 9964321 134456667788888776 4444443
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=84.27 E-value=7 Score=30.49 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=46.4
Q ss_pred EEEEEEEeCCCchhhcc-cch-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRT-ITS-----SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQTSK 91 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~ 91 (168)
.+.+.|.||||...... +.. ..+..++.+++|+|+..... +......+.. ..+ .-+|.||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 46789999999754321 111 12447889999999875422 2222222322 234 3578999997432
Q ss_pred cccCHHHHHHHHHhcCCCEEEE
Q psy2646 92 KAVDYQVAKEYADHLKIPFLET 113 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~v 113 (168)
.. ....+....+.|+.++
T Consensus 256 ~g----~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 GG----AALSIRHITGKPIKFL 273 (433)
T ss_dssp CT----HHHHHHHHHCCCEEEE
T ss_pred HH----HHHHHHHHHCCCeEEE
Confidence 21 2334444556655444
No 247
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=83.85 E-value=0.71 Score=33.67 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=26.6
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD 55 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 55 (168)
.+.+.|+|+|+.. .......+..+|.+|+++..+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4678999999864 3344567788999999998763
No 248
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=81.60 E-value=2.1 Score=31.55 Aligned_cols=66 Identities=17% Similarity=0.058 Sum_probs=40.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQT 89 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~ 89 (168)
.+.+.|+|+|+...... .......+|++|+|+..+.. +...+...+..+... +.+ +-+|.|+.|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA---GVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT---TCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC---CCCeEEEEEeCCccC
Confidence 35689999998643211 12344679999999987643 344444455555443 333 34778999854
No 249
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=81.53 E-value=12 Score=26.51 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCchhhcccc-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcE-EEEEecCCCCCCcccC
Q psy2646 19 RTLIVIWDTAGQERFRTIT-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNK-LLVGNKNDQTSKKAVD 95 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi-ivv~nK~Dl~~~~~v~ 95 (168)
.+.+.|+|+||......+. ......+|.+|+++..+ ..++..+..++..+..... .+.++ .+|.|+.+.. ..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~ 189 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NE 189 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CC
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hh
Confidence 4679999999853222111 11224699999988765 4566666666666654421 24554 6889998632 12
Q ss_pred HHHHHHHHHhcCCCEE
Q psy2646 96 YQVAKEYADHLKIPFL 111 (168)
Q Consensus 96 ~~~~~~~~~~~~~~~~ 111 (168)
......+.+.++.+++
T Consensus 190 ~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 190 YELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHcCCccc
Confidence 3344455555666554
No 250
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=79.88 E-value=4 Score=31.27 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=37.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh------hHHHHHHHHHHHHHhcCCCCc---EEEEEecCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE------TFNNLKQWLEEIDRYACDNVN---KLLVGNKND 87 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~p---iivv~nK~D 87 (168)
..+.+.|+|+|+.-. ......+..+|.+|+++..+... .+..+...+..+... ..+.+ ++.+.|+.+
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEE-GVEPRLSASIGFMSKMT 321 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHT-TCCCCCCEEEEEECC--
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhc-CCCCceeEEEEEEeccC
Confidence 346799999997643 23344567899999999775331 122233333334333 22232 466788887
No 251
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.33 E-value=11 Score=29.47 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCchhhcc-cch-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRT-ITS-----SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
.+.+.|.||||...... +.. ...-.+|.+++|+|+.... ++......+... -....+|.||.|....-
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~---l~i~GVIlTKlD~~~~~ 253 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK---VGVTGLVLTKLDGDARG 253 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---TCCCEEEEESGGGCSSC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc---CCceEEEEeCcCCcccH
Confidence 45688999999743221 111 1122588999999986432 222222223221 11246789999964321
Q ss_pred ccCHHHHHHHHHhcCCCEEEEe
Q psy2646 93 AVDYQVAKEYADHLKIPFLETS 114 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vS 114 (168)
-....+....+.|+.++.
T Consensus 254 ----g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 254 ----GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp ----HHHHHHHHHHCCCEEEEE
T ss_pred ----HHHHHHHHHHCCCEEEEe
Confidence 123345566788887776
No 252
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.23 E-value=1.4 Score=34.40 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCCcEEEEEecCCCCCCcccCH--HHHHHHHHhcCCCEEEEecc
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDY--QVAKEYADHLKIPFLETSAK 116 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~vSa~ 116 (168)
.+.|+|+|.||+|......+.. ..+..-....|+++|.+|..
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 4789999999999765433211 11111123346777777743
No 253
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=78.23 E-value=7.3 Score=29.16 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=52.2
Q ss_pred EEEEEeCCCchhhcc-cchh-----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q psy2646 21 LIVIWDTAGQERFRT-ITSS-----YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v 94 (168)
.+.+.||+|...... +... ..-..|-.++++|..... ++......+... --..+++.||.|-...-
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~~it~iilTKlD~~a~~-- 284 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---VKIDGIILTKLDADARG-- 284 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---SCCCEEEEECGGGCSCC--
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---cCCCEEEEeCcCCccch--
Confidence 456799999753222 1111 112478889999976542 222233333322 12347889999963321
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCCCCHHH
Q psy2646 95 DYQVAKEYADHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 123 (168)
-....+....+.|+.+++ +|+++++
T Consensus 285 --G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 285 --GAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp --HHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred --hHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 223456667789999988 6766644
No 254
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=78.12 E-value=13 Score=25.32 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCchhhc----ccchhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFR----TITSSYYRGAH-GIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~----~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~~ 92 (168)
.+.+.|.|+||.-... ..........+ .+|++.... ..+...+...+..+.. .+.++ -+|.|+.|...
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~---~~~~i~gvvlN~~~~~~-- 181 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH---AGLTLAGWVANDVTPPG-- 181 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH---TTCCEEEEEEECCSSCC--
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH---CCCcEEEEEEeCCCCch--
Confidence 3678999999754211 11122222222 477777764 3456666555555542 24564 58899998532
Q ss_pred ccCHHHHHHHHHhcCCCEEE
Q psy2646 93 AVDYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~ 112 (168)
.........+.+.++.+++.
T Consensus 182 ~~~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 182 KRHAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp TTHHHHHHHHHHHSSSCEEE
T ss_pred hhHHHHHHHHHHHcCCCEEE
Confidence 12223344455567777654
No 255
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=77.32 E-value=2.2 Score=34.84 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=34.6
Q ss_pred EEEEEeCCCchh-------------hcccchhhhcCCcE-EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 21 LIVIWDTAGQER-------------FRTITSSYYRGAHG-IIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 21 ~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
.+.+.|.||... ...+...|+....+ ++++++.+....-..+..+...+ ...+.+.|+|.||.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v---~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV---DPEGDRTIGILTKP 224 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH---CSSCCSEEEEEECG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH---hhcCCceEEEecch
Confidence 488999996322 12233455555444 44444433221111223333333 23467899999999
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|+.
T Consensus 225 Dlv 227 (608)
T 3szr_A 225 DLV 227 (608)
T ss_dssp GGS
T ss_pred hhc
Confidence 975
No 256
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=76.38 E-value=2.6 Score=30.63 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=35.4
Q ss_pred cCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH--HHHHHHHHhcCCCEEE
Q psy2646 42 RGAHGIIVVYDCTD-QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY--QVAKEYADHLKIPFLE 112 (168)
Q Consensus 42 ~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~ 112 (168)
..++++++++|... +-.-.+ ..++..+. . ..++++|.+|.|.....+... .........+++.+|.
T Consensus 110 aRal~~lllldep~~gL~~lD-~~~l~~L~---~-~~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLD-LEFMKHLS---K-VVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHH-HHHHHHHH---T-TSEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred heeeeeeEEEecCCCcCCHHH-HHHHHHHH---h-cCcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccccC
Confidence 34788999998652 211111 22233332 2 289999999999765432211 1222233455666554
No 257
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=71.18 E-value=9.7 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=37.3
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
..|++++.||.|... .++...+.. ...++++|+..+.|++.+.+.+.+.+.-
T Consensus 249 ~~p~i~v~nKid~~~-----~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~L~L 300 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLS-----IEELELLYR--IPNAVPISSGQDWNLDELLQVMWDRLNL 300 (376)
T ss_dssp EECEEEEEECGGGSC-----HHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHHHCC
T ss_pred ccceEEEEecccccC-----HHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHHcCC
Confidence 479999999999633 233333322 2358899999999999988888776643
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=69.08 E-value=18 Score=28.95 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=49.9
Q ss_pred EEEEEEeCCCchhhcc--cc--hhh---h-----cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 20 TLIVIWDTAGQERFRT--IT--SSY---Y-----RGAHGIIVVYDCTDQ-ETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~--~~--~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
+.+.|.||+|...... +. ... + ...+-++|++|+... +.+.. ...+.... +. ..+++||.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~~--~i-tgvIlTKL 448 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEAV--GL-TGITLTKL 448 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHHT--CC-SEEEEECG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhhc--CC-CEEEEEcC
Confidence 4577999999742211 10 001 1 125678999998754 22322 22232221 22 36789999
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHH
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 123 (168)
|-... . -.+..+...++.++.++. .|.++++
T Consensus 449 D~tak-g---G~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 449 DGTAK-G---GVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GGCSC-C---THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CCccc-c---cHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 95322 1 134456667788888866 5655544
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.71 E-value=9.7 Score=27.94 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=48.5
Q ss_pred EEEEEEEeCCCchhhcc--cch--hhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRT--ITS--SYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~--~~~--~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
+..+.|.||+|...... +.. ..+. ..+.+++++|.+.. ...+..+...+.. -+ ..-++.||.|.....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~~ 255 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTSL 255 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSCC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccch
Confidence 35789999999764321 111 1222 36788999987642 2333333332221 12 235667999975422
Q ss_pred ccCHHHHHHHHHhcCCCEEEEe
Q psy2646 93 AVDYQVAKEYADHLKIPFLETS 114 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vS 114 (168)
-.........+.|+.+++
T Consensus 256 ----g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 ----GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ----HHHHHHHHTCSCCCSEEC
T ss_pred ----hHHHHHHHHHCcCEEEEE
Confidence 244456667788876665
No 260
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=64.48 E-value=5.4 Score=31.28 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=34.7
Q ss_pred EEEEEeCCCch--hhcccc--------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh
Q psy2646 21 LIVIWDTAGQE--RFRTIT--------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY 72 (168)
Q Consensus 21 ~l~l~Dt~G~~--~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 72 (168)
...+||..|.+ ++...+ ..++..+++.++|+|.++. +......|+..+...
T Consensus 88 ~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 88 SFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp CGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 34689999973 333333 5567678899999999987 455556666666544
No 261
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=63.00 E-value=16 Score=29.20 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=40.4
Q ss_pred CCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEe--ccCCCCHHHHHHHHHHHHH
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETS--AKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~i~~~l~~~~~ 133 (168)
.++|++|.+|+..-..+.+ .+.+.++++..++.+..+. ++-|.|-.++-+.+++.+.
T Consensus 359 fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 359 FNLPVVVALNRFSTDTEKE--IAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp TTCCEEEEEECCTTCCHHH--HHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred cCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhc
Confidence 4899999999987544333 3456678888898665443 5566778888777776654
No 262
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=59.99 E-value=48 Score=24.29 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=49.4
Q ss_pred EEEEEeCCCchhhcc-----c-------chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 21 LIVIWDTAGQERFRT-----I-------TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~-----~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.+.+.||+|...... + .+......+.+++++|+...... ...+..+.... + ..+++.||.|-
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence 456899999643211 0 01123356778889998754322 22223332211 2 34788999986
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVE 122 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 122 (168)
...-. .+..+...++.|+.++. .|++++
T Consensus 260 ~a~gg----~~l~i~~~~~~pi~~ig--~Ge~~~ 287 (304)
T 1rj9_A 260 TAKGG----VLIPIVRTLKVPIKFVG--VGEGPD 287 (304)
T ss_dssp SCCCT----THHHHHHHHCCCEEEEE--CSSSTT
T ss_pred ccccc----HHHHHHHHHCCCeEEEe--CCCChh
Confidence 43212 23355566788888887 444443
No 263
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=57.34 E-value=7.3 Score=31.22 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=41.5
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
..++|++|.+|+..-..+.+ .+.+.+++...|+.+..+=++-|.|-.++-+.+++.+.+
T Consensus 372 ~fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 372 KFGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTTCCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HcCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 45899999999987544322 244556777777765544566778888888888877654
No 264
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=52.69 E-value=36 Score=25.54 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCC
Q psy2646 43 GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKND 87 (168)
Q Consensus 43 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D 87 (168)
.++.+++|.... ..+..++...+..+... +.+ .-+|+|+..
T Consensus 234 ~~~~~vlV~~pe-~~si~ea~r~~~~L~~~---g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISE-FLSLYETERLIQELISY---DMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESS-HHHHHHHHHHHHHHHHT---TCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCC-cchHHHHHHHHHHHHHc---CCCCCEEEEecCC
Confidence 578888888754 56777888777777655 344 468899987
No 265
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=51.93 E-value=20 Score=27.24 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=25.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD 55 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 55 (168)
.+.+.|+|+|+.-. ......+..+|.+|+++..+.
T Consensus 244 ~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 244 DYDFILVDSGPHLD--AFLKNALASANILFTPLPPAT 278 (398)
T ss_dssp TCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSH
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCch
Confidence 46799999997642 223445668999999997764
No 266
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=48.04 E-value=19 Score=26.83 Aligned_cols=51 Identities=8% Similarity=0.067 Sum_probs=35.6
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
....| ++|++|-|.+ .++..+.++..+++++.++..+...+..+..++...
T Consensus 78 ~~~~P-~IIltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 78 RPETP-AIIVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp CTTCC-CEEECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred cCCCC-EEEEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 34677 5566776654 245667888889999998888777777776665543
No 267
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=47.69 E-value=39 Score=21.67 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++|++.+++|.+|.. ..-...++..+-+....+.++.++++.+...+...
T Consensus 75 ~VP~~~v~sk~eLG~----------a~G~~~~~s~vaI~d~~~s~~~~l~~~i~~~~~~~ 124 (134)
T 2ale_A 75 NVPYVFVPSRVALGR----------ACGVSRPVIAASITTNDASAIKTQIYAVKDKIETL 124 (134)
T ss_dssp TCCEEEESCHHHHHH----------HTTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHH
T ss_pred CCCEEEECCHHHHHH----------HhCCCCCeEEEEEEcCChHHHHHHHHHHHHHHHHh
Confidence 799988887766521 11122334455555555667888888887776654
No 268
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=44.49 E-value=66 Score=21.29 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=37.8
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hcCCCCcEEEEEecC
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR---YACDNVNKLLVGNKN 86 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~piivv~nK~ 86 (168)
..+.++|....+ ..-+..+|++|+....-...-...+..|+..+.. ....+.|+.++++--
T Consensus 35 ~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g 98 (188)
T 2ark_A 35 TEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSG 98 (188)
T ss_dssp EEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEES
T ss_pred CeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECC
Confidence 456666664422 2346779999999877654333445666666543 123468888888854
No 269
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=42.86 E-value=1e+02 Score=22.92 Aligned_cols=85 Identities=6% Similarity=0.074 Sum_probs=48.5
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCC--c------ccCHHHHHHHHHhcCCC---EE
Q psy2646 44 AHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQTSK--K------AVDYQVAKEYADHLKIP---FL 111 (168)
Q Consensus 44 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~--~------~v~~~~~~~~~~~~~~~---~~ 111 (168)
.+++++|.... .-+..++......+... +.|+ -+|.|+...... . ......+.++++.++.+ .+
T Consensus 237 ~~~~vlV~~p~-~~~~~e~~r~~~~l~~~---~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~i 312 (349)
T 3ug7_A 237 RTAFRLVVIPE-EMSILESERAMKALQKY---GIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYV 312 (349)
T ss_dssp TEEEEEEECSS-HHHHHHHHHHHHHHHHT---TCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CceEEEEECCC-ccHHHHHHHHHHHHHHC---CCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 36677776554 45777788777777665 5666 788999875321 0 01122344556666543 34
Q ss_pred EEeccCCCCHHHHHHHHHHHHH
Q psy2646 112 ETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 112 ~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+....+-.|++.+ ..+.+.+.
T Consensus 313 Pl~~~e~~g~~~L-~~~~~~l~ 333 (349)
T 3ug7_A 313 PLLRTEAKGIETL-KQIAKILY 333 (349)
T ss_dssp ECCSSCSCSHHHH-HHHHHHHC
T ss_pred cCCCCCCCCHHHH-HHHHHHHc
Confidence 5566666776554 44444443
No 270
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=42.57 E-value=19 Score=27.17 Aligned_cols=50 Identities=20% Similarity=0.017 Sum_probs=31.7
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR 71 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 71 (168)
.+.+.|+|+|+... ......+..+|.+++++..+ +.+...+..+...+..
T Consensus 259 ~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~~ 308 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVVL 308 (373)
T ss_dssp CCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHHH
Confidence 56799999985432 23345678899999998665 3444444444444433
No 271
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=39.10 E-value=30 Score=23.61 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=37.6
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCC
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR---YACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKI 108 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 108 (168)
.-+..+|++|++...=+..--..++.|+..+.. ....++|+.++++---.... .......+.+...++.
T Consensus 69 ~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~il~~lg~ 140 (199)
T 4hs4_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGG-ARAQNHLRQSLVFLDA 140 (199)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCS-HHHHHHHHHHHHHTTC
T ss_pred HHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCccc-HHHHHHHHHHHHHcCC
Confidence 347789999999866543222234445555533 12457899888875321111 1122344555556664
No 272
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=38.99 E-value=25 Score=23.93 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=29.2
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
.+..+|++|+....=+..--..+..|+..+......++|++++++-
T Consensus 82 ~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 82 ALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA 127 (191)
T ss_dssp HHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE
T ss_pred HHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC
Confidence 4678999999987655432333455555553222457888888873
No 273
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=37.88 E-value=71 Score=21.13 Aligned_cols=72 Identities=7% Similarity=-0.043 Sum_probs=37.7
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCE
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPF 110 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 110 (168)
.-+..+|++|+....-...--..+..|+..+... ...++|+.++++--...............+...++..+
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~ 142 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLV 142 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 4577899999998765432222344444444221 13467888888754321211112233444555566543
No 274
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=36.98 E-value=64 Score=21.40 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=38.3
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
.-+..+|++|+....=...--..+..|+..+... ...++|+.++++--...............+...+++.++
T Consensus 66 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~ 142 (199)
T 2zki_A 66 DDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIV 142 (199)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEEC
T ss_pred HHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEe
Confidence 3567899999998765432222344444443211 234678888777543211111223344455666665443
No 275
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=36.73 E-value=72 Score=19.47 Aligned_cols=78 Identities=6% Similarity=0.045 Sum_probs=37.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCH
Q psy2646 43 GAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANV 121 (168)
Q Consensus 43 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i 121 (168)
..|++|+=+++.+.+.++ ++..+... ..+..|+|++....+. ..... +...|..-|-. .....
T Consensus 52 ~~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~~--------~~~~~-~~~~g~~~~l~---kp~~~ 115 (147)
T 2zay_A 52 HPHLIITEANMPKISGMD----LFNSLKKNPQTASIPVIALSGRATA--------KEEAQ-LLDMGFIDFIA---KPVNA 115 (147)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHTSTTTTTSCEEEEESSCCH--------HHHHH-HHHHTCSEEEE---SSCCH
T ss_pred CCCEEEEcCCCCCCCHHH----HHHHHHcCcccCCCCEEEEeCCCCH--------HHHHH-HHhCCCCEEEe---CCCCH
Confidence 356665555444433333 33444331 1346888887765431 11222 22345433322 35567
Q ss_pred HHHHHHHHHHHHHHh
Q psy2646 122 EQAFLTMATEIKKRV 136 (168)
Q Consensus 122 ~~i~~~l~~~~~~~~ 136 (168)
.++...+...+....
T Consensus 116 ~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 116 IRLSARIKRVLKLLY 130 (147)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776665555443
No 276
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=33.86 E-value=45 Score=22.84 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=28.7
Q ss_pred cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEec
Q psy2646 36 ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNK 85 (168)
Q Consensus 36 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK 85 (168)
..+..+++++.+|+++...-..+- ...| +|.... ..++|||+|--.
T Consensus 72 rLReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 72 RLHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp HHHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETT
T ss_pred HHHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECC
Confidence 345568889999999876644331 2223 443333 458998888654
No 277
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=33.70 E-value=21 Score=24.11 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=37.7
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH-HHHHHHHhcCCCEE
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ-VAKEYADHLKIPFL 111 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~-~~~~~~~~~~~~~~ 111 (168)
.+..+|++|+....=+..--..+..|+..+......++|++++++ ..-... ..... ....+...++..++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~~-~~a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPAH-VLALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGGG-GGHHHHTHHHHHHTTTCSEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcch-hhHHHHHHHHHHHHcCCEec
Confidence 467899999998765432222334444444222244789998888 332221 11111 34556666665443
No 278
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=33.03 E-value=16 Score=24.11 Aligned_cols=71 Identities=8% Similarity=-0.017 Sum_probs=38.9
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
.+..+|++|+....=+..--..+..|+..+......++|+.++++--.-... .......+.....+++.++
T Consensus 60 ~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g~-~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 60 RVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDGG-INALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTCS-HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChhH-HHHHHHHHHHHHHcCCEEe
Confidence 5678999999987755432233444444432222346888888865322111 1122345566666776444
No 279
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=31.43 E-value=37 Score=23.04 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=30.6
Q ss_pred hhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHH-hcCCCCcEEEEEecC
Q psy2646 38 SSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDR-YACDNVNKLLVGNKN 86 (168)
Q Consensus 38 ~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~ 86 (168)
...+..+|++|++...=+ +..+..+.+|+..... ....++|+.+++.--
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~ 114 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSP 114 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEES
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCC
Confidence 345788999999964433 3456666666643211 113478998887643
No 280
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=30.70 E-value=1e+02 Score=20.50 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=35.7
Q ss_pred EEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh--------cCCCCcEEEEEec
Q psy2646 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY--------ACDNVNKLLVGNK 85 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------~~~~~piivv~nK 85 (168)
+.+.|.......... ..-+..+|++|+.+.+=.-.--..+..|+..+... ...+++++++.+-
T Consensus 31 v~v~dL~~~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 31 VTWHPLVADFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp EEEEECCTTCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred EEEEECCCcccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 556666542222221 34578999999999775432223345566665211 1346777777764
No 281
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=29.95 E-value=60 Score=21.90 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=37.5
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCC
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY---ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIP 109 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 109 (168)
.-+..+|++|++...=+..--..+..|+..+... ...++|+.++++----... .......+.+...++..
T Consensus 68 ~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg-~~a~~~Lr~~l~~lg~~ 140 (193)
T 3svl_A 68 EQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGG-ARCQYHLRQILVFLDAM 140 (193)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcch-HHHHHHHHHHHHHCCCE
Confidence 4577899999998665432222334444444321 2457898888874321111 11223445555666643
No 282
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=29.57 E-value=12 Score=26.64 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=11.1
Q ss_pred CcEEEEEEeCCChhhHH
Q psy2646 44 AHGIIVVYDCTDQETFN 60 (168)
Q Consensus 44 ~d~~i~v~d~~~~~s~~ 60 (168)
..|+|+|++...+...+
T Consensus 103 iggII~~f~~p~~~~~~ 119 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQE 119 (233)
T ss_dssp EEEEEEEECHHHHCGGG
T ss_pred cceEEEEEeCCCcchHH
Confidence 47899999765544333
No 283
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=28.00 E-value=85 Score=20.69 Aligned_cols=72 Identities=7% Similarity=-0.007 Sum_probs=36.5
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
.-+..+|++|+....-...--..+..|+..+... ...++|+.++++--.. ............+...+++.++
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v 139 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIV 139 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEE
Confidence 4577899999998664432222334444443221 1346788888776432 2111122334444555564443
No 284
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=27.20 E-value=92 Score=20.90 Aligned_cols=73 Identities=8% Similarity=0.009 Sum_probs=37.3
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH----hcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR----YACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
.-+..+|++||....-...--..+..|+..+.. ....++|+.++++--...............+...+++.++
T Consensus 74 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v 150 (211)
T 1ydg_A 74 ADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLT 150 (211)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEEC
T ss_pred HHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEe
Confidence 356789999999866443212234444544421 1134678877777433211111222344555555665443
No 285
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=26.82 E-value=1.1e+02 Score=20.19 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=23.3
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
.++.||++|.++|...+++=--. + +-... ..++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~-E-iGyA~---algKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAF-X-IGFMR---AMHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHH-H-HHHHH---HTTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCcee-e-hhhHh---hCCCeEEEEE
Confidence 46789999999997655431111 1 11122 2378988874
No 286
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=25.72 E-value=67 Score=21.60 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=29.4
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-------------cCCCCcEEEEEec
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-------------ACDNVNKLLVGNK 85 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-------------~~~~~piivv~nK 85 (168)
-+..+|++|+.+..=+..--..+..|+..+... ...+++++++.+-
T Consensus 70 ~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~ 128 (196)
T 3lcm_A 70 LVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTH 128 (196)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEEC
T ss_pred HHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcC
Confidence 467899999999776543223456677766321 1346788777775
No 287
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=25.30 E-value=66 Score=22.35 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=39.0
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
-+..+|++|+....=...--..+..|+..+... ...+.|++++++--- .+. .........+...+|+.++
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~-~g~-~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAES-NGS-DNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESS-CCS-CCHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCC-Cch-hhHHHHHHHHHHHCCCeee
Confidence 367899999998775532223344555554221 134678888776532 111 1223445566667776543
No 288
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=24.87 E-value=34 Score=22.84 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=28.1
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh---cCCCCcEEEEEec
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY---ACDNVNKLLVGNK 85 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~piivv~nK 85 (168)
.+..+|++|+....=...--..+..|+..+... ...++|++++++-
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 467899999987554322222345566655331 1346888888886
No 289
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=24.64 E-value=53 Score=22.05 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=38.0
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----------cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCC
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----------ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKI 108 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----------~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 108 (168)
.-+..+|++|+....=+..--..+..|+..+... ...++|++++++--.. ..... ......+...+|+
T Consensus 63 ~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g~~~~-~~~l~~~l~~~G~ 140 (192)
T 3fvw_A 63 EEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-SPEEV-FEDYRSLLPFIRM 140 (192)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC----CC-SHHHHHHHHHTTC
T ss_pred HHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-chhHH-HHHHHHHHHHcCC
Confidence 4577899999997664432223445566665421 1346888887765432 21112 2445566666674
No 290
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=24.11 E-value=73 Score=19.45 Aligned_cols=68 Identities=9% Similarity=0.038 Sum_probs=37.0
Q ss_pred hhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 40 YYRGAHGIIVVYDCTDQETFN--NLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
.+..+|++++....-...-.. .+..++..+.. ...+.|+.++++--.- .. -............+..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~~~t~g~~-~~--~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGLFGSYGWG-SG--EWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEEEEEESSC-CS--HHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEEEEecCCC-Cc--hHHHHHHHHHHHCCCEEc
Confidence 467899999987664221111 24455555533 2357889988885321 11 123344455566676544
No 291
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=23.56 E-value=1.7e+02 Score=19.67 Aligned_cols=49 Identities=8% Similarity=-0.007 Sum_probs=27.5
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI 69 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 69 (168)
..+.+.|....+..... ..-+..||++|+.+.+=.-.--..+..|+..+
T Consensus 48 ~~v~~~dL~~~~d~~~~-~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv 96 (204)
T 2amj_A 48 HDVRIVRADSDYDVKAE-VQNFLWADVVIWQMPGWWMGAPWTVKKYIDDV 96 (204)
T ss_dssp CEEEEEESSSCCCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred CEEEEEeCCccccHHHH-HHHHHhCCEEEEECCccccCCCHHHHHHHHHH
Confidence 34566666543222222 33578899999999776532222344555554
No 292
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=23.43 E-value=65 Score=20.99 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=27.1
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-----------cCCCCcEEEEEec
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-----------ACDNVNKLLVGNK 85 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-----------~~~~~piivv~nK 85 (168)
-+..+|++|+.+..=...--..+..|+..+... ...+++++++++-
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 124 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVG 124 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEE
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeC
Confidence 477899999999775532222334444443210 1235788888874
No 293
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.35 E-value=1.1e+02 Score=18.86 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=35.8
Q ss_pred hhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCC
Q psy2646 40 YYRGAHGIIVVYDCTDQETFN--NLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKI 108 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 108 (168)
-+...|++++....-...... .+..++..+... ..+.++.++++--. ... -......+..+..|.
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t~g~-~~~--~a~~~l~~~l~~~G~ 108 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGSYGW-GDG--KWMRDFEERMNGYGC 108 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEEESS-SCS--HHHHHHHHHHHHTTC
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEecCC-CCC--hHHHHHHHHHHHCCC
Confidence 467889999998664321111 344555555432 45788888887432 111 122444555566664
No 294
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=22.33 E-value=2.1e+02 Score=21.32 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=27.3
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q psy2646 45 HGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQ 88 (168)
Q Consensus 45 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl 88 (168)
+++++|.... .-+..++...+..+... +.|+ -+|.|+...
T Consensus 232 t~~vlVt~pe-~~~~~ea~r~~~~L~~~---gi~v~gvVvN~~~~ 272 (348)
T 3io3_A 232 TTFICVCISE-FLSLYETERMIQELMSY---NMDVNSIVVNQLLF 272 (348)
T ss_dssp EEEEEEEESS-HHHHHHHHHHHHHHHHT---TCCCCEEEEEEECC
T ss_pred eEEEEEecCC-ccHHHHHHHHHHHHHHC---CCCccEEEEcCCcc
Confidence 4666666554 56777888888887665 3444 788898864
No 295
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=22.15 E-value=59 Score=20.53 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=6.4
Q ss_pred CCcEEEEEecCC
Q psy2646 76 NVNKLLVGNKND 87 (168)
Q Consensus 76 ~~piivv~nK~D 87 (168)
++|++.+.+|.+
T Consensus 67 ~Ip~~~v~sk~~ 78 (126)
T 2xzm_U 67 EIKYVSVPKRAS 78 (126)
T ss_dssp TCCEEEESCSHH
T ss_pred CCCEEEECCHHH
Confidence 456655555444
No 296
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=22.14 E-value=1.4e+02 Score=18.39 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=24.8
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEe
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLE-EIDRYACDNVNKLLVGN 84 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~piivv~n 84 (168)
..+++++++|+++......+ .|.. ++......++|++.|--
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s-----~wv~~EI~~A~~~gkpIigV~~ 75 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRR-----DEILGAVDLARKSSKPIITVRP 75 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSH-----HHHHHHHHHHTTTTCCEEEECC
T ss_pred CccccCCEEEEEeCCCcCCC-----hHHHHHHHHHHHcCCCEEEEEc
Confidence 56889999999987654322 2222 23333345789776643
No 297
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.11 E-value=1.8e+02 Score=19.26 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=35.2
Q ss_pred EEEEeCCCchh-hcccchhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEE-EecCCC
Q psy2646 22 IVIWDTAGQER-FRTITSSYYR--GAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLV-GNKNDQ 88 (168)
Q Consensus 22 l~l~Dt~G~~~-~~~~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv-~nK~Dl 88 (168)
+.+=|+-+... +..+.. .+. ++|.+|++=|+.+.. ..+....++..+... +.|+++| ||+ |.
T Consensus 9 ~~iSD~H~~~~~~~~~~~-~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~---~~pv~~v~GNH-D~ 75 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVK-LAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEA---HLPTAYVPGPQ-DA 75 (228)
T ss_dssp EEEECCTTCHHHHHHHHT-HHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGG---CSCEEEECCTT-SC
T ss_pred EEEeeccCCHHHHHHHHH-HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc---CCcEEEECCCC-Cc
Confidence 45678776532 222222 222 799999999987654 444444555555433 4566544 665 54
No 298
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=21.35 E-value=1.9e+02 Score=21.22 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=35.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHH
Q psy2646 42 RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYAD 104 (168)
Q Consensus 42 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~ 104 (168)
.++|+++++-..-...+-+.+..++..+.+.. +.| +++.| .... ++.+...++++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~lP-iilYn----~tg~-l~~~~~~~La~ 159 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL--DAP-SIIYF----KDAH-LSDDVIKELAP 159 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS--SSC-EEEEE----CCTT-SCTHHHHHHTT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC--CCC-EEEEe----CCCC-cCHHHHHHHHc
Confidence 47899988865544446667777777776553 578 55677 3334 66666666664
No 299
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=20.78 E-value=2.5e+02 Score=20.74 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=27.0
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q psy2646 45 HGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQ 88 (168)
Q Consensus 45 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl 88 (168)
.++++|... +.-+..++......+... +.|+ -+|.|+...
T Consensus 223 t~~vlVt~p-e~~~~~ea~r~~~~L~~~---gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIP-EFLSLYETERMIQELANY---GIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECS-SHHHHHHHHHHHHHHHHT---TCCEEEEEEEEECC
T ss_pred eeEEEEECC-CccHHHHHHHHHHHHHHC---CCCccEEEECCCcC
Confidence 356666544 456778888888888665 4555 678898763
No 300
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.74 E-value=2.5e+02 Score=20.41 Aligned_cols=76 Identities=8% Similarity=0.121 Sum_probs=43.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCC--c------ccCHHHHHHHHHhcCC-CE--EE
Q psy2646 45 HGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQTSK--K------AVDYQVAKEYADHLKI-PF--LE 112 (168)
Q Consensus 45 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~--~------~v~~~~~~~~~~~~~~-~~--~~ 112 (168)
+++++|.... .-+..++......+... +.|+ -+|.|+...... . ......+.++.+.++. ++ ++
T Consensus 223 ~~~vlV~~p~-~~~~~~~~~~~~~l~~~---gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iP 298 (324)
T 3zq6_A 223 TSFKMVVIPE-EMSIYESERAMKALEKY---SIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVP 298 (324)
T ss_dssp EEEEEEECSS-HHHHHHHHHHHHHHHHT---TCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CeEEEEeCCc-ccHHHHHHHHHHHHHHC---CCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 4777776554 56778888888887665 4565 788899864321 0 0111223344555542 33 34
Q ss_pred EeccCCCCHHHH
Q psy2646 113 TSAKNGANVEQA 124 (168)
Q Consensus 113 vSa~~~~~i~~i 124 (168)
.-..+-.|++.+
T Consensus 299 l~~~e~~g~~~L 310 (324)
T 3zq6_A 299 LLKKEAKGIETL 310 (324)
T ss_dssp CCSSCSCSHHHH
T ss_pred CCCCCCCCHHHH
Confidence 455666676654
No 301
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=20.63 E-value=1.6e+02 Score=18.03 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=23.6
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCT 54 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 54 (168)
.+.+.--...|.+ +.+....+..+|++|+.-|..
T Consensus 35 ~ikVEtqgs~g~~--n~Lt~~~I~~AD~VIia~d~~ 68 (106)
T 2m1z_A 35 LIKVETQGATGIE--NELTEKDVNIGEVVIFAVDTK 68 (106)
T ss_dssp EEEEEEEETTEES--SCCCHHHHHHCSEEEEEESSC
T ss_pred EEEEEEecCcccc--CCCCHHHHhhCCEEEEecccc
Confidence 4455555555543 455567889999999999976
No 302
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=20.60 E-value=61 Score=23.83 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=35.6
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQ 88 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl 88 (168)
-+.+=||-+.... + .+..+|++|++=|+.+.....++..++..+... ...++ +|.||+ |.
T Consensus 62 i~~iSD~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l--~~~~v~~V~GNH-D~ 122 (296)
T 3rl5_A 62 FVCISDTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNL--PYEYKIVIAGNH-EL 122 (296)
T ss_dssp EEEEBCCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS--CCSEEEECCCTT-CG
T ss_pred EEEEeeCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhC--CCCeEEEEcCCc-cc
Confidence 4567788876431 1 346899999999998765555555445544433 12334 444554 54
No 303
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=20.59 E-value=78 Score=20.70 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=26.7
Q ss_pred hhcCCcEEEEEEeC-CChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 40 YYRGAHGIIVVYDC-TDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 40 ~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
-+...|.+++.+.. .....-..+..++..+......+.++.++++-
T Consensus 42 ~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~g 88 (175)
T 1ag9_A 42 DLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCG 88 (175)
T ss_dssp HHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEEC
T ss_pred HhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEEC
Confidence 45678999998765 22221123444555554323446888888873
No 304
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=20.15 E-value=1.3e+02 Score=22.66 Aligned_cols=65 Identities=5% Similarity=-0.053 Sum_probs=37.8
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHh-cCC
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLLVGNKNDQTSKKAVDYQVAKEYADH-LKI 108 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~-~~~ 108 (168)
.+..+|++|+....-...-...+..++..+..... .++|+.++++--. .. . .......+... ++.
T Consensus 304 ~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~g~-~~-~--a~~~l~~~l~~~~g~ 370 (414)
T 2q9u_A 304 HTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAFGW-SN-R--AVPDIVAELRDGCKA 370 (414)
T ss_dssp HHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEESS-SC-C--HHHHHHHHHHHTSCC
T ss_pred HHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEecCC-Cc-h--hHHHHHHHHHhhcCc
Confidence 46689999999766543222335556666544323 4688888887532 22 1 23455566666 664
Done!