RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2646
(168 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 115 bits (288), Expect = 9e-34
Identities = 56/117 (47%), Positives = 84/117 (71%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQERFRTIT++YYRGA GI++VYD T++++F+N++ W+ I+ +A +V K++
Sbjct: 57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 116
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
+GNK D K+ V + ++ A I F+ETSAK NVE AF T+A +IK ++ K
Sbjct: 117 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 111 bits (279), Expect = 1e-32
Identities = 50/113 (44%), Positives = 79/113 (69%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ +WDTAGQERFR++T +YYR AH ++++YD T++ +F+N++ WL EI YA +V +L
Sbjct: 58 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 117
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+GNK D ++ V + ++ A +PF+ETSAK G NV+ AF +A E+K+
Sbjct: 118 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 109 bits (272), Expect = 2e-31
Identities = 59/115 (51%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQERFRTIT++YYRGA GII+VYD TD+ TF N+KQW + ++ +A D LL
Sbjct: 53 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 112
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
VGNK+D ++ V + A L IPF+E+SAKN NV + F T+A I++++
Sbjct: 113 VGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 106 bits (264), Expect = 3e-30
Identities = 53/114 (46%), Positives = 76/114 (66%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQER+RTIT++YYRGA G I++YD T++E+FN ++ W +I Y+ DN LL
Sbjct: 56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
VGNK D ++ V + ++ ADHL F E SAK+ NV+Q F + I ++
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 104 bits (260), Expect = 2e-29
Identities = 53/119 (44%), Positives = 80/119 (67%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
IWDTAGQER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ +L
Sbjct: 55 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 114
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140
VGNK+D +AV A+ +A+ + F+ETSA + NVE+AF + TEI + V++ +
Sbjct: 115 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 104 bits (260), Expect = 2e-29
Identities = 79/129 (61%), Positives = 97/129 (75%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQERFRTITSSYYRG+HGII+VYD TDQE+FN +K WL+EIDRYA V KLL
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 116
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEK 141
VGNK D K+ V+Y VAKE+AD K+PFLETSA + NVE AFLTMA +IK+ +++
Sbjct: 117 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 176
Query: 142 PSSESDAKK 150
+ +
Sbjct: 177 NETTQKKED 185
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 103 bits (257), Expect = 4e-29
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQERFR++T SYYRGA G ++VYD T +ET+N L WL + A N+ +L
Sbjct: 56 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 115
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140
GNK D + + V + A +A ++ FLETSA G NVE+AF+ A +I ++ E
Sbjct: 116 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 103 bits (256), Expect = 5e-29
Identities = 54/111 (48%), Positives = 73/111 (65%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQERFR +T SYYRGA G ++VYD T + T+N+L WL + N +L
Sbjct: 55 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 114
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
+GNK D +++ V Y+ AK++A+ + FLE SAK G NVE AFL A +I
Sbjct: 115 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 101 bits (253), Expect = 2e-28
Identities = 54/115 (46%), Positives = 80/115 (69%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQE FR+IT SYYRGA G ++VYD T +ETFN+L WLE+ +++ N+ +L+G
Sbjct: 56 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
NK+D S++ V + + +A + F+ETSAK NVE+AF+ A EI +++ +
Sbjct: 116 NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 101 bits (252), Expect = 2e-28
Identities = 54/111 (48%), Positives = 77/111 (69%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQERFR+IT SYYR A+ +I+ YD T +E+F L +WL EI++YA + V +L
Sbjct: 56 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 115
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
VGNK D ++ V Q A+E+++ + +LETSAK NVE+ FL +A +
Sbjct: 116 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 99.5 bits (247), Expect = 2e-27
Identities = 45/114 (39%), Positives = 64/114 (56%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ IWDTAGQERFRT+T SYYRGA G+I+VYD T ++TF L WL E++ Y N +
Sbjct: 58 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 117
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+ + VD ++A + F+E SAK V+ AF + +I +
Sbjct: 118 LVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 99.2 bits (246), Expect = 3e-27
Identities = 47/115 (40%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLVG 83
WDTAGQERFR++T++++R A G ++++D T Q++F N++ W+ ++ C+N + +L+G
Sbjct: 69 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 128
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
NK D ++ V+ + A+E AD IP+ ETSA G NVE+A T+ I KR+ +
Sbjct: 129 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 183
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 98.1 bits (243), Expect = 4e-27
Identities = 43/109 (39%), Positives = 65/109 (59%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQERFR++ SY R + +VVYD T+ +F +W++++ +V +LVG
Sbjct: 53 LWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG 112
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D K+ V + + A L + F+ETSAK G NV+Q F +A +
Sbjct: 113 NKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 91.9 bits (227), Expect = 1e-24
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLVG 83
DTAGQE + I +Y+R G + V+ T+ E+F + E+I R +NV LLVG
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
NK+D K+ V + AK AD + ++ETSAK ANV++ F + EI+ R
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 91.2 bits (225), Expect = 2e-24
Identities = 41/111 (36%), Positives = 66/111 (59%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERF + YYR ++G I+VYD TD+++F +K W++E+ + + + +VG
Sbjct: 56 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D ++ V Q A+ YA+ + TSAK +E+ FL + + +
Sbjct: 116 NKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 91.2 bits (225), Expect = 2e-24
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 86.9 bits (214), Expect = 9e-23
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLVG 83
DTAG E+F ++ Y + G I+VY +Q++F ++K ++I R + V +LVG
Sbjct: 56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133
NK D S++ V + A+ PF+ETSAK+ V++ F + ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 82.4 bits (202), Expect = 4e-21
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERF ++ YYR A +VVYD T ++F + W++E+ A ++ LVG
Sbjct: 56 IWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115
Query: 84 NKNDQTSKKAVDYQVAKE---YADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
NK D + +E A+ + F ETSAK G NV FL + +I +
Sbjct: 116 NKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 81.6 bits (200), Expect = 1e-20
Identities = 47/110 (42%), Positives = 69/110 (62%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ERFR + YYRG+ I+VYD T +ETF+ LK W+ E+ ++ ++ + G
Sbjct: 57 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 116
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133
NK D T + V + AK+YAD + F+ETSAKN N+ + F+ ++ I
Sbjct: 117 NKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 80.8 bits (198), Expect = 2e-20
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKL 80
+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
LVGNK D ++ V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 113 LVGNKCDLAART-VESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 78.8 bits (193), Expect = 1e-19
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNK 79
IWDTAGQERFR++ + +YRG+ ++ + D ++F NL W +E YA ++
Sbjct: 59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
+++GNK D + ++ + D+ P+ ETSAK+ NV AF +
Sbjct: 119 VILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 77.7 bits (190), Expect = 3e-19
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLVG 83
DTAG E+F + Y + G +VY T Q TFN+L+ E+I R ++V +LVG
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Query: 84 NKNDQTSKKAVDYQVAKEYA-DHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D ++ V + + A FLE+SAK+ NV + F + +I +
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 74.6 bits (182), Expect = 5e-18
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR-YACDNVNKLLV 82
+WD GQ++ R + YY G G+I V DC D++ + +Q L I + L+
Sbjct: 60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 119
Query: 83 GNK---NDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133
NK D + ++ + A +G + + + + K
Sbjct: 120 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 74.3 bits (181), Expect = 7e-18
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLLVG 83
DTAGQE F + Y R G ++V+ TD+ +F + ++ +I R D +L+G
Sbjct: 58 LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
NK D ++ V + ++ A LK+ ++E SAK NV+QAF + I+K
Sbjct: 118 NKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 74.3 bits (181), Expect = 9e-18
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ +WDTAGQE + + Y ++ + +F N++ R+ C N +L
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114
Query: 82 VGNKNDQTSKKAVD------------YQVAKEYADHLK-IPFLETSAKNGANVEQAFLTM 128
VG K D K Y A + + +LE SA ++ F
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174
Query: 129 ATEI 132
+
Sbjct: 175 IRAV 178
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 73.1 bits (178), Expect = 2e-17
Identities = 45/113 (39%), Positives = 72/113 (63%), Gaps = 5/113 (4%)
Query: 22 IVIWDTAGQERF-RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
I +WDTAGQERF +++ YYR H ++ VYD T+ +F++L W+EE ++ +++ +
Sbjct: 53 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 112
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAK---NGANVEQAFLTMA 129
+LVGNK D S V +A+++AD +P ETSAK + +VE F+T+A
Sbjct: 113 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 72.4 bits (176), Expect = 4e-17
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVG 83
DTAGQE F + Y R HG ++V+ D+++FN + + +I R D+ +LVG
Sbjct: 59 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
NK D S++ V A + + + E SAK NV++AF + ++K
Sbjct: 119 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 72.7 bits (177), Expect = 4e-17
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR-YACDNVNKL 80
+ +WD GQ R YY +I V D TD++ + + L + + + L
Sbjct: 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122
Query: 81 LVGNKND---QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+ NK D S V ++ + +SA G + + + IK+
Sbjct: 123 VFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 71.7 bits (174), Expect = 7e-17
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+++WDTAGQE F IT +YYRGA ++V+ TD+E+F + W E ++ L
Sbjct: 53 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTAL 111
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
V NK D + + A+ A LK+ F TS K NV + F +A +
Sbjct: 112 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 71.6 bits (174), Expect = 7e-17
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVG 83
DTAGQE F + Y R G ++VY TD+ +F ++ ++ + I R +LV
Sbjct: 57 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 116
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNG-ANVEQAFLTMATEIKKR 135
NK D + V KE A IP++ETSAK+ NV++ F + I+++
Sbjct: 117 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 70.8 bits (172), Expect = 2e-16
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84
+DTAGQE + + Y ++ + + +F N+K+ + NV LL+G
Sbjct: 62 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 121
Query: 85 KNDQTSKKA------------VDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATE 131
+ D + + ++ A + ++E SA ++ F
Sbjct: 122 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181
Query: 132 I 132
I
Sbjct: 182 I 182
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 69.6 bits (169), Expect = 4e-16
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK--LLV 82
DT G +F + H I+VY T +++ LK E+I D + +LV
Sbjct: 55 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 114
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
GNK D++ + V A+ A K F+ETSAK NV++ F + K+R
Sbjct: 115 GNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 68.9 bits (167), Expect = 6e-16
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+WD GQ++ R + Y++ G+I V D D+E N ++ L + LL
Sbjct: 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105
Query: 82 VGNKN----DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
V + + + ++ H T A +G + + ++ ++
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 68.6 bits (166), Expect = 1e-15
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 23 VIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK--- 79
+WDTAGQERF+++ ++YRGA ++VYD T+ +F N+K W +E +A N +
Sbjct: 55 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 114
Query: 80 -LLVGNKNDQTSKKAVDYQVAKEY--ADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+++GNK D K + + + + IP TSAKN NV+ AF +A ++
Sbjct: 115 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 68.5 bits (166), Expect = 1e-15
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ ++DTAGQE + + Y +V + +F N+K+ + C LL
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 112
Query: 82 VGNKNDQTSKKAV------------DYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTM 128
VG + D + + A++ A LK + ++E SA ++ F
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
Query: 129 ATEIKKRVTKDEK 141
+ +
Sbjct: 173 ILAALEPPEPKKS 185
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 68.2 bits (165), Expect = 2e-15
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNK 79
IWDTAGQERF+++ ++YRGA ++V+D T TF L W +E A +N
Sbjct: 55 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 114
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
+++GNK D +++ + IP+ ETSAK NVEQAF T+A K+ T+
Sbjct: 115 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 174
Query: 140 E 140
E
Sbjct: 175 E 175
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 65.0 bits (157), Expect = 2e-14
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 38 SSYYRGAHGIIVVYDCTDQETFNNLKQWLE-EIDRYACDNVNKLLVGNKNDQTSKKAVDY 96
+ R G ++VYD TD+ +F + + NV +LVGNK D + V
Sbjct: 67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 126
Query: 97 QVAKEYADHLKIPFLETSAKNG-ANVEQAFLTMATEIKKR 135
+ ++ A L F E SA G N+ + F + E+++R
Sbjct: 127 EEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 63.9 bits (154), Expect = 5e-14
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 4/117 (3%)
Query: 23 VIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLL 81
IWD GQ+ R+ +Y+ G+I V D D++ + ++ L+ + L+
Sbjct: 49 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 108
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLK---IPFLETSAKNGANVEQAFLTMATEIKKR 135
NK D + + D ++ SA G ++ + +I R
Sbjct: 109 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 63.8 bits (154), Expect = 6e-14
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 4/113 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+WD GQ + R SY+ +I V D D++ F Q L E+ V L+
Sbjct: 64 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123
Query: 83 GNKND---QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D + + SA G V+ + +
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 63.9 bits (154), Expect = 6e-14
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE-IDRYACDNVNKL 80
++WD GQE R+ ++YY +IVV D TD+E + ++ L + + L
Sbjct: 61 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 120
Query: 81 LVGNKND---QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133
+ NK D + + + + A G + Q M + +K
Sbjct: 121 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 63.5 bits (153), Expect = 9e-14
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+ +WDTAG E + + Y I++ + ++ N+ + ++ C NV +L
Sbjct: 52 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 111
Query: 82 VGNKNDQTSKKAVD------------YQVAKEYADHLK-IPFLETSAKNGANVEQAFLTM 128
VGNK D + + + ++ A+ + ++E SAK V + F
Sbjct: 112 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
Query: 129 ATEI 132
Sbjct: 172 TRAA 175
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 60.5 bits (145), Expect = 9e-13
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
++D Q+ R + ++VY TD+ +F + ++ R D+V +LV
Sbjct: 52 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILV 111
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEK 141
GNK+D + V + A F+ETSA NV+ F + +I+ R +D K
Sbjct: 112 GNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR--RDSK 168
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 60.5 bits (145), Expect = 9e-13
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLLVGNKNDQTSKKAVDYQV 98
+ ++VY TD+ +F + ++ R +++ +LVGNK+D + V
Sbjct: 74 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE 133
Query: 99 AKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+ A F+ETSA NV++ F + +++ R
Sbjct: 134 GRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 59.7 bits (143), Expect = 2e-12
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDT+G + + Y + +++ +D + ET +++ + + + C N LLVG
Sbjct: 54 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 113
Query: 84 NKND------------QTSKKAVDYQVAKEYADHLKI-PFLETSAKNGAN-VEQAFLTMA 129
K+D + V Y A + ++E SA N V F
Sbjct: 114 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 173
Query: 130 TEIKKR 135
+
Sbjct: 174 LACVNK 179
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 59.4 bits (142), Expect = 3e-12
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL-EEIDRYACDNVNKLLVG 83
DTAGQ+ + +Y +G I+VY T ++F +K + +D + +LVG
Sbjct: 57 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 116
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D ++ + Y+ K A+ FLE+SAK F + E +K
Sbjct: 117 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 55.4 bits (132), Expect = 9e-11
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84
WDTAGQE+F + YY A I+++D T + T+ N+ W + C+N+ +L GN
Sbjct: 57 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGN 115
Query: 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
K D K + + + + + SAK+ N E+ FL +A ++
Sbjct: 116 KVDI--KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 53.2 bits (126), Expect = 6e-10
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQET-FNNLKQWLEEIDRYACDNVNKL 80
+WD G R YY +I V D D++ + + + ++ +
Sbjct: 51 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV 110
Query: 81 LVGNKNDQTSKKAVD---YQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+ NK D + K +TSA G +++A + +K R
Sbjct: 111 VFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 52.3 bits (124), Expect = 1e-09
Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN-----VNKLLVGNKNDQTSKKAV 94
+ A +I V+ D+ +F + + ++ + + + ++ +S + V
Sbjct: 67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126
Query: 95 DYQVAKEYA-DHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140
A+ D + + ET A G NV++ F +A ++ + +
Sbjct: 127 GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 50.5 bits (119), Expect = 4e-09
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 23 VIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLL 81
+WD GQ RFR++ Y RG I+ + D DQE K L + + L+
Sbjct: 50 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 109
Query: 82 VGNKNDQTSKKAVD---YQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133
+GNK D ++ +I S K N++ + K
Sbjct: 110 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 50.1 bits (118), Expect = 8e-09
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+D G + R + Y+ +GI+ + D D E F+ + L+ + A +
Sbjct: 46 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV 105
Query: 82 VGNKNDQTSKKAVDYQVAKE-----------YADHLKIPFLETSAKNGANVEQAF 125
+ + ++ + S +AF
Sbjct: 106 ILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 49.6 bits (117), Expect = 2e-08
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 37/149 (24%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQET-----------FNNLKQWLEEIDRY 72
+ D GQ R + I+ + ++ + + + I
Sbjct: 49 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 108
Query: 73 ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHL-------------------------- 106
N + +L NK D +K + + + ++
Sbjct: 109 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDK 168
Query: 107 KIPFLETSAKNGANVEQAFLTMATEIKKR 135
I T A + N+ F + I +
Sbjct: 169 IIYSHFTCATDTENIRFVFAAVKDTILQL 197
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 47.0 bits (110), Expect = 1e-07
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 16/124 (12%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLLVG 83
+D G + R + +Y +GI+ + DC D E K+ L+ + NV L++G
Sbjct: 62 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121
Query: 84 NKNDQTSKKAVD---------------YQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128
NK D+ + + V+ + + + S + F M
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181
Query: 129 ATEI 132
A I
Sbjct: 182 AQYI 185
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 44.5 bits (104), Expect = 1e-06
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 13/123 (10%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----------- 72
+ D GQ R + I+ + ++ + + +
Sbjct: 48 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 107
Query: 73 ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NV+ +L NK D +K + + + P + + + F +
Sbjct: 108 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGKRRDQ 165
Query: 133 KKR 135
++R
Sbjct: 166 QQR 168
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 43.0 bits (100), Expect = 3e-06
Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 37/149 (24%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-----------WLEEIDRY 72
++D GQ R + G II +D + + + +
Sbjct: 46 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 105
Query: 73 ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHL-------------------------- 106
+ + +L NK D +K + Y ++
Sbjct: 106 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTK 165
Query: 107 KIPFLETSAKNGANVEQAFLTMATEIKKR 135
+I T A + NV+ F + I K
Sbjct: 166 EIYTHFTCATDTKNVQFVFDAVTDVIIKN 194
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 33.4 bits (75), Expect = 0.007
Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 10/126 (7%)
Query: 14 KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA 73
+ + R + I D G E S G I+V + ++ +
Sbjct: 81 EPKFLRRISFI-DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII- 138
Query: 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLK------IPFLETSAKNGANVEQAFLT 127
V L++ K ++ K +P + SA + N++
Sbjct: 139 --GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEG 196
Query: 128 MATEIK 133
+ IK
Sbjct: 197 IEEYIK 202
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 31.0 bits (69), Expect = 0.046
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 14/111 (12%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+I DT G E++ ++ I++ D + + ++
Sbjct: 91 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR----RHSYIASLLGIKHIV 146
Query: 82 VGNKNDQ----------TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVE 122
V + K + F+ SA G NV
Sbjct: 147 VAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.4 bits (67), Expect = 0.071
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 7/112 (6%)
Query: 23 VIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETF----NNLKQWLEEIDRYACDNVN 78
+I + + + A ++ V D + + ++ +
Sbjct: 51 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 110
Query: 79 KLLVGNKNDQTSKKAVD---YQVAKEYADHLKIPFLETSAKNGANVEQAFLT 127
L+ NK D K+ Q+ KE S + ++ A L
Sbjct: 111 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLG 162
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 30.0 bits (66), Expect = 0.094
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 32 RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE---IDRYACDNVNKLLVGNKNDQ 88
+ ++ GA + Q E + N+ +
Sbjct: 87 GHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 146
Query: 89 TSKKAVDYQVAKEYADHL---KIPFLETSAKNGANVEQ 123
K +Y+ KE+ + P + SA +GAN++
Sbjct: 147 KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDV 184
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 29.8 bits (66), Expect = 0.11
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 15/121 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKL 80
I D G F + A I+V + + Q E I +++L
Sbjct: 85 IIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 144
Query: 81 LVG-NKNDQTSKKA-----------VDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128
+V NK D T V + + K+ F+ A +G N+ M
Sbjct: 145 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENM 204
Query: 129 A 129
Sbjct: 205 K 205
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 29.5 bits (66), Expect = 0.13
Identities = 18/109 (16%), Positives = 27/109 (24%), Gaps = 13/109 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
D G + + G I+V D + L V ++
Sbjct: 69 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV----GVPYIV 124
Query: 82 -VGNKNDQTSKKAVDYQVAKEYADHLK--------IPFLETSAKNGANV 121
NK D + V E D L +P + SA
Sbjct: 125 VFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQ 173
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.6 bits (62), Expect = 0.31
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 51 YDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY---QVAKEYADHLK 107
++ + + +++ K D+ K D V + +
Sbjct: 109 VVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168
Query: 108 IPFLETSAKNGANVEQAFLTMATEIKK 134
+ S++ ++A+ + I +
Sbjct: 169 DELILFSSETKKGKDEAWGAIKKMINR 195
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 138
Score = 27.4 bits (61), Expect = 0.46
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 56 QETFNNLKQWLEEIDRYACDNVNKL 80
QE N+K +E ID + + KL
Sbjct: 104 QERVTNMKHAIENIDTFYKEAEKKL 128
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.7 bits (60), Expect = 0.57
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 61 NLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEY----ADHLKIPFLETSAK 116
+ +E ++ ++ NK D+ E + F+ SAK
Sbjct: 106 EIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAK 165
Query: 117 NGANVEQAFLTMATEIKKR 135
G N+E+ + I++R
Sbjct: 166 FGDNIERLKNRIFEVIRER 184
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.4 bits (59), Expect = 0.71
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84
+ A ++ + D T + + + W E + +V N
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARLPAKLPITVVRN 120
Query: 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123
K D T + ++ + SA+ G V+
Sbjct: 121 KADITGET-------LGMSEVNGHALIRLSARTGEGVDV 152
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.4 bits (59), Expect = 0.78
Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Query: 25 WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84
+ + + R + +VV + +Q +E + L +
Sbjct: 79 EEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD 138
Query: 85 KNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQ 123
K ++KA V + + S+ V++
Sbjct: 139 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.9 bits (58), Expect = 0.87
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 42 RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKE 101
A ++ V D + + K ++ V NK D K + K
Sbjct: 79 EKADIVLFVLDASSPLDEEDRKILERIKNKRYLV------VINKVDVVEKINEEEIKNKL 132
Query: 102 YADHLKIPFLETSAKNGANVEQ 123
D ++ SA G +E+
Sbjct: 133 GTDR---HMVKISALKGEGLEK 151
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 26.7 bits (58), Expect = 1.4
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 17/115 (14%)
Query: 26 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TFNNLKQWLEEIDRYACDNVNKLLV 82
D G + + T + A ++V E F Q E +N L+V
Sbjct: 108 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVV 167
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLK--------------IPFLETSAKNGANVEQ 123
+ KE D L + ++ SA G NV+
Sbjct: 168 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 222
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.5 bits (57), Expect = 1.7
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 47 IIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHL 106
+ D +E +++ ++++ L K D + + + Y++ + L
Sbjct: 163 ALNKVDLLSEEEKERHRKY--------FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL 214
Query: 107 K-IPFLETSAKNGANVEQAFLTMATEI 132
+ L SAK E T+A E
Sbjct: 215 PPVRVLYLSAKTREGFED-LETLAYEH 240
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 26.2 bits (56), Expect = 2.2
Identities = 9/83 (10%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 47 IIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQTSKKAVDYQVAKEYADH 105
+V + D+ + + ++ ++ ++ + + K + K + E D
Sbjct: 125 FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDR 184
Query: 106 LK-----IPFLETSAKNGANVEQ 123
+ + + SA G + +
Sbjct: 185 VTDFASQVSIIPISAITGEGIPE 207
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 25.6 bits (56), Expect = 2.2
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 41 YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
A I+ + + I + + ++ +
Sbjct: 51 VENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDAD 88
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
tridentatus) [TaxId: 6853]}
Length = 73
Score = 24.5 bits (53), Expect = 2.6
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 38 SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79
S+Y + + +C +N + + + C +VNK
Sbjct: 25 CSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCTSVNK 66
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.1 bits (53), Expect = 3.8
Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV 77
T + ++ + +T + R A ++ V D T + +
Sbjct: 55 TCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTIL 114
Query: 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
NK + + + +V E + SA++ N++ T+ +++++
Sbjct: 115 VA----NKAEN--LREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 166
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 25.0 bits (53), Expect = 4.0
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 47 IIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLV--GNKNDQTSKKAVDYQVAKEYAD 104
++V+ Q ++ ++R +V + + ++
Sbjct: 94 VVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF 153
Query: 105 HLKIPFLETSAKNGANVEQ 123
P + TSA G N+++
Sbjct: 154 IDYSPLIFTSADKGWNIDR 172
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 24.7 bits (52), Expect = 6.3
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123
+ + + + + + + SAK G V++
Sbjct: 125 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE 164
>d1s28a_ d.198.1.1 (A:) AvrPphF ORF1, chaperone of AvrPphF ORF2
{Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Length = 130
Score = 24.1 bits (52), Expect = 8.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 105 HLKIPFLETSAKNGANVEQAFLTMATEIKK 134
H +IP L V +A L ++ E+KK
Sbjct: 98 HTRIPLLNLDNVEMRRVFEALLNLSGEVKK 127
>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Flavobacterium meningosepticum, endoglycosidase F1
[TaxId: 238]}
Length = 285
Score = 24.3 bits (52), Expect = 8.6
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 42 RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY 96
+ + + D NNL L+ + D V D + K
Sbjct: 3 KANIKLFSFTEVNDTNPLNNLNFTLKNSGKPLVDMVVLFSANINYDAANDKVFVS 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 597,729
Number of extensions: 25686
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 80
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.7 bits)