BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2647
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
EKP+KC CGK+FSQSSNL H R HTG KP+ C CG++F + DL++H+ T HT +P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKP 60
Query: 69 V 69
Sbjct: 61 Y 61
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
GEKP+KC CGK+FSQSS+L H R HTG KP+ C CG++F R L RH+ T
Sbjct: 29 GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
GEKP+KC CGK+FS+S +L H R H K
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 40/54 (74%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH++ QH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 8 GEKPHKCQVCGKAFSQSS 25
GEKP C +CG+ F++S
Sbjct: 28 GEKPFACDICGRKFARSD 45
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
GEKP+KC CGK+FSQ +NL H R HTG KP+AC CG++F + LR H+ T HT +
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEK 132
Query: 68 PV 69
P
Sbjct: 133 PY 134
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
GEKP+ C CGK+FS+S +L H R HTG KP+ C CG++F K DL RH+ T HT +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEK 76
Query: 68 PV 69
P
Sbjct: 77 PY 78
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
GEKP+KC CGK+FS +L H R HTG KP+ C CG++F ++ +LR H+ T HT +
Sbjct: 46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEK 104
Query: 68 PV 69
P
Sbjct: 105 PY 106
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
GEKP+KC CGK+FS+ NL TH R HTG KP+ C CG++F R+ L H+ T
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
GEKP+ C CGK+FSQ ++L H R HTG KP+ C CG++F R+ +L H+ T HT +
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT-HTGEK 160
Query: 68 PV 69
P
Sbjct: 161 PY 162
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
GEKP+KC CGK+FS+ L H R HTG K
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV 69
SS+ + + G KP+AC CG++F R L H+ T HT +P
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPY 50
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FS+S L H R HTG KPF C +C R F R L H T HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F++S H++ H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FS SSNL H R HTG KPF C +C R F R L H T HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F++S H++ H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FS+S+ L H R HTG KPF C +C R F R L H T HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F++S H++ H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FS+S++L H R HTG KPF C +C R F R L H T HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F++S H++ H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH
Sbjct: 27 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FS+S L H R HTG KPF C +C R F R L H T HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 59
Query: 67 RP 68
+P
Sbjct: 60 KP 61
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F++S H++ H
Sbjct: 58 GEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FSQS +L H R HTG KPF C +C R F R L H T HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F++S H++ H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FS+S L H R HTG KPF C +C R F R L H T HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F++S H++ H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/32 (93%), Positives = 30/32 (93%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
I GEKPHKCQVCGKAFSQSSNLITHSRKHTG
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
C++CGK+F +SS L TH H+ +P+ C CG+ F +K D+++H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
I +P+ CQ CGK F Q S++ H+ HTG KP C +CG+AF + +L H
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
F C +CG++F+R L H H++ RP P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTRPYP 31
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
I G+KP +C++C + FSQ ++L H R HTG KPFACD+CGR F H T+HT
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATL-----HTRTRHT 82
Query: 65 EM 66
++
Sbjct: 83 KI 84
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FSQ +NL TH R HTG KPF C +C R F ++ L H T HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F+ H++ H
Sbjct: 59 GEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHK 59
EKP+ C CGKAFS+SS L+ H R HTG KP+ C CG+AF + L H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHT 35
GEKP+KC CGKAFSQ+S LI H R HT
Sbjct: 39 GEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF R L +H+ HT +P
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRV-HTGEKP 42
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF 49
I G+KP +C++C + FSQ + L H R HTG KPFACD+CGR F
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
E+P+ C V C + FSQ +NL TH R HTG KPF C +C R F + L +H T HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGE 60
Query: 67 RP 68
+P
Sbjct: 61 KP 62
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
GEKP C +CG+ F+ H++ H
Sbjct: 59 GEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDL 55
+KC CGK+FS SS+L H R HTG KP+ CD CG+AF ++ L
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
GEKP+KC CGKAF Q S+LI H R HTG P
Sbjct: 43 GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 11 PHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
PHKC+VCGK FS+ L TH R HTG KP+ C C A L +H H++ RP
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERP 64
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
G KP+KC+ C A + SS+L H R H+ +PF C +C A + L H + +
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Query: 68 P 68
P
Sbjct: 93 P 93
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPV 69
C+ CG+ F++S NL+ H R HT +P+ CD+C +AF+R+ LR H+ H++ +P
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEKPF 74
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHK 59
E+P+ C +C KAF + +L H H+ KPF C CG+ F + L HK
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKH 34
I EKP KCQ CGK F QS L H H
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
GEKPHKC + C K++S+ NL TH R HTG KP+ C+ C +AF D +H+ H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 64 TEMRPV 69
+ +P
Sbjct: 124 SNEKPY 129
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 8 GEKPHKCQ--VCGKAFSQSSNLITH-SRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQ 62
GEKP+ C+ C KAFS +S+ H +R H+ KP+ C L C + + LR+H +T
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 63 H 63
H
Sbjct: 154 H 154
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 19 KAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPV 69
+ F L+ H R+HTG KP C C +++ R +L+ H + HT +P
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPY 98
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1 MISNIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
M S GEKP++C C + FS+S L H R+HTG KPF C C R F R L+ H
Sbjct: 26 MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Query: 59 KETQHTEMRPV 69
T HT +P
Sbjct: 86 TRT-HTGEKPF 95
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRH 58
G KP +C+ C + FS+S +L TH+R HTG KPF+C C + F R +L RH
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPV 69
C K + + S+L HSRKHTG KP+ CD C R F R L+RH + +HT ++P
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPF 67
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+KP+KC C +F NL +H HTG KP+ C++CG F R +L+ H E
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
GEKP++C +CG F++ +NL TH+R H+G KP
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPV 69
KP+ CD C +F+ K +L HK T HT +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK-TVHTGEKPY 46
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
GEKP+KC + C F++S L H RKHTG KPF C +C R+F R L H
Sbjct: 42 GEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKETQHTEMRPV 69
C K +++SS+L H R HTG KP+ C + C F R +L RH +HT +P
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPF 76
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
G KP +C VC ++FS+S +L H ++H
Sbjct: 72 GAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
GEKP+ C CG F++S L H RKHTG +PF C C RAF R L H
Sbjct: 32 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPV 69
CGK +++SS+L H R HTG KP+ CD CG F R +L RH +HT RP
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPF 66
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
G +P +CQ C +AFS+S +L H ++H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
C+VC +AF++ +L H R HT KP+ C LC RAF R+ L RH + H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
F C++C RAF R+ L+RH + HT +P P
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYP 32
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRK-HTG 36
EKP+ C +C +AF++ LI H++K H+G
Sbjct: 27 NEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
GEKP+ C CG F++S L H RKHTG +PF C C RAF R L H
Sbjct: 33 GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 85
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRPV 69
CGK +++SS+L H R HTG KP+ CD CG F R +L RH +HT RP
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPF 67
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
G +P +CQ C +AFS+S +L H ++H
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
HG + H C CGKAF +SS L H HTG KPF C CG+ F +LR H HT
Sbjct: 30 HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HT 88
Query: 65 EMRP 68
RP
Sbjct: 89 GDRP 92
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRH 58
GEKP +C + CGK FS NL TH R HTG +P+ C D C + F + +L+ H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 5 IWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFK 38
I G++P+ C C K F+QS+NL +H H K
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
G +P+ C VCGK F +L+ H + HTG KP+ C++C + F + RH
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
G+K + CQ CGK+F+ S H H G +P+ C +CG+ F+ K L H + HT ++
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK 64
Query: 68 PV 69
P
Sbjct: 65 PY 66
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRH 58
GEKP C CGK F++S NL H R HTG KPF C+ C R F D ++H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRP 68
+C GK+F L+ H R HTG KPF C CG+ F R +L+ HK T HT +P
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKP 120
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
G +C CGK F + L H R HTG KP+ C+ C A +K LR H E H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
E+P C CGK + +S L H R H G++P +C CG+ F+ + ++ RH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+PF C+ CG+ ++ L RH+ H RP
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRA-HLGYRP 32
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C+ CGKAFSQ+++LI H R HTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF + L +H+ HT +P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRV-HTGEKP 40
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG--FKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP+ C VCG F + + H R H G KP+ C CG+ F R L H + H+
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
C++CGK F +L H H+G KP++C +CG F+RK + H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 35 TGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+G AC++CG+ F+ L RHK + E
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGE 33
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MISNIWHGEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
+++ + +P+ C V C + FS+S L H R HTG KPF C +C R F R L H
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 59 KET 61
T
Sbjct: 69 IRT 71
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHT 35
I G+KP +C++C + FS+S +L TH R HT
Sbjct: 43 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET 61
CGK + +SS+L H+R HTG KPF+C C R F R +L RH+ T
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGKAFSQ+S L H R HTG KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+AF + L RH+ HT +P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRI-HTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E+PHKC CGK+F QS++LI H R HTG KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EK +KC VCGK FSQSS+L TH R HTG KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
K + CD+CG+ F + L+ H+ HT +P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRV-HTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C CGKAF+Q +NL H R HTG KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF +K +L +H+ HT +P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRI-HTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C CGKAF+ SNL TH + HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF + +L H++ HT +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKI-HTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ F + L H+ HT ++P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRI-HTGVKP 40
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHK 59
+C C K F L H+RKHTG KPF C CG+ + RK +L H+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP---FACDLCGRAFQRKVDLRRHKETQHT 64
GEKP +C CGK + + NL+ H ++ + F C +C F+R+++LR H +
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG 91
Query: 65 EM 66
EM
Sbjct: 92 EM 93
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
E+ C VC + F + L H HTG P+ C C + F +K DL+ H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRK-HTG 36
GE P+KC C + F Q +L +H K H+G
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E+P+ C VCGKAF+ SNLI H + HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+P+ C +CG+AF + +L +H++ HT +P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKI-HTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C CGKAFSQ +LI H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 38 KPFACDLCGRAFQRKVDLRRH 58
KP+ CD CG+AF +K L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH 30
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KCQVCGKAF SS+L+ H H+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C +CG+AF+ L +H H+ RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSV-HSGERP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
S+ GEKP++C+ CGK+FSQ +L H R HTG P
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KP+ C CG++F ++ L H E HT P
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVH-ERLHTGSGP 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRV-HTGGKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKPH+C+ CGK+FS +S LI H R HTG P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
KP++C CGKAFSQ+S L H R HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+AF + L RH+ HT +P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRV-HTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP+ CQ CGKAF+QSS L H R HTG
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KP+ C CG+AF + L H+ E P
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGP 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGKAF SNL TH HTG KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+AF+ +L H + HT +P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTH-QVIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C CGKAFS S LI H R H+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ C CG+AF K L H T E P +
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP +C CGK+FS SS L TH R HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C CG++F L H+ HT +P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRI-HTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C CGKAF S+ L+ H R HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ CD CG+AF +L RH+ HT +P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRI-HTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
GEKP+ C CGKAF+ S LI H HTG KP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KP++C+ CG+AF K L HK HT ++P
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGV-HTGVKP 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
KP +C +CGKAF+Q+S+LI H R+HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C+VC KAF+Q ++L H + HTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C +C +AF +K L +H++T HT +P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKT-HTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP +C C KAF+ SNLI H R HTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C C +AF K +L H+ T HT +P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRT-HTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP KC+ CGK F+Q+S L +H R HTG KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C+ CG+ F + L H+ HT +P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRV-HTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGK F+Q+S+L+ H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGI-HTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP++C CGKAF S LI H R HTG
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KP+ C CG+AF K L H+ T E P
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGP 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C CGK FSQ S L H R HTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ F +K L H+ T HT +P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRT-HTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C VCGKAFS +L H R H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C +CG+AF + L H+ H+ +P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRI-HSGKKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C CGKAFS S+L TH HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+AF + L H+ HT +P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAI-HTGKKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGKAF + ++L H R HTG++P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF R L H+ HT RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRI-HTGYRP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
GEKP+ C CGK FS S LI H R HTG K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E P++C CGKAFS+ LI+H R H G KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
P+ C CG+AF RK L H+ T E P +
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP KC+ CGKAF Q+ +L +H R HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C CG+AF++ + L H HT +P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRI-HTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
G KP+ C CGKAF S LI H R HTG KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KP+ C CG+AF+ K L H T HT +P
Sbjct: 2 SSGSSGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKP 38
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E+ H+C CGK F Q+SN I H R HTG KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP +C+ CGK F+Q+S+L +H R HTG KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C+ CG+ F + L H+ HT +P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRV-HTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHS-RKHT-GFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
GEKP++C +C F+QS + H +KHT F C C RK DL H QH+
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Query: 66 MRP 68
P
Sbjct: 72 SGP 74
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
R H+G KP+ C +C F + ++ H +HTE
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE 41
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP+ C CGKAF + S+ ITH R HTG
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KP+ C CG+AF RK H+ E P
Sbjct: 2 SSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGESGP 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGK F+Q+S+L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C+ CGKAF S L H R HTG KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+AF L+ H+ HT +P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRI-HTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC VC K+F S+L H R HTG KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEK H+C CGKAFS S LI H R HTG
Sbjct: 7 GEKLHECNNCGKAFSFKSQLIIHQRIHTG 35
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGKAF +S+ H R HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 20/30 (66%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
EKP+KC CGKAF SNL TH HTG K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ C CG+AF+ + +L H+ E R P +
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSS 45
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
++P++C CGKAF S+LI H R HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+P+ C CG+AF+ K L H+ + HT +P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRS-HTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C +CGK+F++ S L H + HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C +CG++F +K L H++ HT +P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQI-HTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
EKP++C CGKAF ++S LI H R H+G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF R L H+ T E P
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGESGP 41
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
KP+ C C K FS S LI H R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C C + F K L H+ + HT ++P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRS-HTGVKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
EKP++C C KAF+ SNL+ H R HTG
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ C +AF K +L H+ T E P
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGP 41
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C VC KAFS ++L H R H+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ CD+C +AF L +H+ E P +
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E+ ++C CGKAF++ S LI H R HTG KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGK F +S L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ F+ L RH+ HT +P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRI-HTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
G+KP+ C CGKAF S LI H R HTG
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KP+ C+ CG+AF K L H+ E P
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGESGP 39
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GE P++C CGKAF++ LI+H R H G
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G P+ C CG+AF RK L H+ T E P
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGP 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGKAF S+L H H+G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ C+ CG+AF+ + L H+ T E P +
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
KP+ C CGKAFS S+L TH HTG KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+AF L H + HT +P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH-QVIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH--TGFKP--FACDLCGRAFQRKVDLRRHKET 61
GEKP+ C C K F Q L H +++ F P F C CG+ F R+ + RH +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
R HTG KP+AC C + F++K L H + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C CGKAF+ SNLI H + HT KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF + +L +H++ HT+ +P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKI-HTKQKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
+KP+KC CGK F+Q+S+L H HTG KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C+ CGK+F +S L+ H R H+G KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC+ CGK ++ NL H + HTG +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+ + K +L H++ HT RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKV-HTGERP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C CGK+F Q S+L H R HTG KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG++F +K L RH+ HT +P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRI-HTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP KC+ CGK F +S +H R H+G KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KPF C+ CG+ F H+ + E P +
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP KC CGK+++Q +L H R HTG KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C CG+++ ++V L +H+ HT +P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRV-HTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRH 58
GEKP C + C K F+ +L HS HTG K F CD C F K ++++H
Sbjct: 30 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKETQHTE 65
CG A++++ L H KHTG KPF C + C + F L RH T E
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
EKP++C CGKAF S LI H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKET 61
KP+ C+ CG+AF K L H+ T
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERT 34
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTG 36
KP+ C CGKAF S LI H+R HTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 37 FKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C+ CG+AF+ K L H T E P
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGP 41
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP+ C CGKAF+ S LI H HTG
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHK 59
S +G KP+ C CG+AF K L H+
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVHQ 30
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC CGK F ++S+L H HTG KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+ F+R L RH + HT +P
Sbjct: 11 KPYKCHECGKVFRRNSHLARH-QLIHTGEKP 40
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRH 58
GEKP C + C K F+ +L HS HTG K F CD C F K ++++H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 93
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKETQHTE 65
CG A++++ L H KHTG KPF C + C + F L RH T E
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKET 61
CGKAF + + L H HT P+ C + C + F L+RH++
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
EKP+KC CGKAF++ S L H + HTG
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ C CG+AF RK L H+++ E P +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC+ CGK F +L TH HTG KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP KC CGK FS+ S L H + HTG KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C CG+ F R+ L H + HT +P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKL-HTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EK +KC CGK FS++S L H + HTG KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
K + C+ CG+ F R L +H++ HT +P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKI-HTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
G++ ++CQ CGK+F Q +L H R HTG P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
EKP+KC+ CGK +++ NL H R H G K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ C+ CG+ + R+++L H+ E P +
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E P C CGK F+ +NLI H + HTG +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
PF C CG+ F K +L H++ HT RP
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKI-HTGERP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
+KP +C CGK+F NL+TH R HTG K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KPF C CG++F+ K +L H+ HT + P +
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPSS 44
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ 62
C+ CG + S L H R HT +P+ C C +F+ K +L +H +++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSR-KHTGFKP 39
+KP++C CGKAF Q+++LI H R HTG KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+AF + L RH HT +P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP++C CGK+F + S L H R HTG P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG++F +K L H+ HT P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRI-HTGENP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHT 35
EKP+ C VCGKAF S++L H R HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
KP++C++CG+AF L +H E P
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP KC +CGK+F S L HS HT KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF CD+CG++F + L RH HT +P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMV-HTAEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
S+ G+KP C CGK F QSS L H R H+G KP
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
S +G KP C+ CG+ F++ L +H+ E P +
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGPSS 43
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 18/31 (58%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP C CGKAFS L H R HTG KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KPF C CG+AF + L +H+ HT +P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRI-HTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHT---GFKPFACDLCGRAFQRKVDLRRHKETQHT 64
G +C++CG Q ++L H RKH F C+ CG+ F++ + H+ H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 65 EMRPVP 70
+ P
Sbjct: 64 ALLLAP 69
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 4 NIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
NI EK + C+ C K F + H HTG + + C CG++F + H ++ H
Sbjct: 43 NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Query: 64 TE 65
++
Sbjct: 103 SQ 104
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EK + C+ CGK+FS++ L+ H R H+G KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
+K KC C K F+QSS+L H R HTG KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+KC+ CG F Q ++L H HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
GEK H+C C K FS S L+ H R HTG P
Sbjct: 7 GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
KP +C+ C + FS+S +L TH+R HTG K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP +C C K+F Q S L +H HTG KP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 35 TGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
T KPF CD C ++F+++ L H+ HT +P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMI-HTGEKP 40
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
EKP KC CGKAF S LI H R H K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITH--SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
GE ++C+VC + ++ SN H + K + C C + F RK ++ H + H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
EKP+KC CGK+F+ S L H + HTG
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ C CG++F K LR H++ E P +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E+ ++C CGKAF Q S L H R H G KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
EKP+KC CGK + + +L H R HTG K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
KP+ C CG+ ++R++DL H+ E P +
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
K H+C CG+ F+ S+L H R HTG KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTG 36
+P+ C VCGK FS + TH R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
S+ GEKP C C KAFS S L+ H + H KP
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KPF C C +AF K L H++T H E +P
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKP 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP+ C++CG F L +H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
E P++C CGK FS+ L++H + H+G
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
P+ C CG+ F RK L H++T + P
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQSGP 41
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 37 FKPFACDLCGRAFQRKVDLRRHKETQHTE 65
KP+ CD CGR+F RH ET T+
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD 29
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKH 34
KP++C CG++FS ++ + H H
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 11 PHKCQVCGKAFSQSSNLITHSRKHTGFK 38
P KC+ CGK F+ S NL H R H+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKP 39
+C CGKAF++ S L H + HTG KP
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
K F C CG+AF RK L H++ HT +P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKI-HTGEKP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKH 34
KP+ C+ CGK F QSS L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+ F R L H + HT RP
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERP 41
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDL 44
KP+ CQ CGK FS+ +L H ++ HT +P C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHT 35
E+P KC CGK F + S+L H R H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
+PF C+ CG+ F R+ L H E P +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHT 35
GEKP+ C C + FS ++ L+ H + HT
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKH 34
E+P+ C CGK F + S+LI H ++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
E P KC CGK FS S++L H H G P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 39 PFACDLCGRAFQRKVDLRRHK 59
PF C+ CG+ F L +H+
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQ 32
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
KP++C CGK+FS S L H HT KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG++F L +H T HT +P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWIT-HTREKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 11 PHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
P+KC C K+FS L+ H R HT KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP+ C VCG F + + H R H G
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRH 58
S +G KP++C +CG F+RK + H
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYH 29
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
KP+KC C A + +NL H RKHTG K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EK KC+ C FSQ+S+L H H G KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKP 39
EKP C CG FS+S L H R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 38 KPFACDL--CGRAFQRKVDLRRHKETQHTEMRP 68
KPFAC CG F R +L RH+ + H+ ++P
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRS-HSGVKP 42
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
EK H+C+ CG+ F Q +LI H H G K
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKET 61
CGKAF + + L H HT P+ C + C + F L+RH++
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKET 61
CGKAF + + L H HT P+ C + C + F L+RH++
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
EKP +C+ CG FS S +L H R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHT 35
E P KC C + F+Q + L+ H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKE 60
+R TG KPF C C R+F R L H++
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
G KP +C C ++FS+S +L H ++H
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
EK H C CGK F S L H R H G K
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 10 KPHKCQVCGKAFSQSSNLITH 30
K ++CQ C K F+ SSNL TH
Sbjct: 1 KTYQCQYCEKRFADSSNLKTH 21
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 38 KPFACDLCGRAFQRKVDLRRH 58
KP+ACD+CG+ ++ + L H
Sbjct: 6 KPYACDICGKRYKNRPGLSYH 26
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger
Domain: Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQHT 64
+AC LC RAF R+ L RH + H+
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHS 27
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
+KP++C+ C K F Q +L H R HTG
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTG 37
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFA 41
C++CGK F +L H H+G KP++
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTE 65
K AC++CG+ F+ L RHK + E
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGE 38
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRK 33
E P+ C CGK+F+Q +L H R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRS 33
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
H C VCG++F+ H R + F C C F L RH H
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 36 GFKPFACDLCGRAFQRKVDLRRH-KETQHTEMRPV 69
F C LC F V L++H + T+HT++ PV
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPV 105
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQHTE 65
F C++C RAF R+ L+RH + E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFK 38
C+VC +AF++ L H R HT K
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQHTE 65
F C++C RAF R+ L+RH + E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFK 38
C+VC +AF++ +L H R HT K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQHTE 65
F C++C RAF R+ L+RH + E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFK 38
C+VC +AF++ L H R HT K
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTE 65
KPF C LC A + K +L+ H TE
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
+K H C + CGK + ++S+L H R HTG
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTG 36
+CQ CGK F SS LI H H G
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAG 37
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 10 KPHKC--QVCGKAFSQSSNLITHSRKHTGFK 38
+P C CGK F++S L H R HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 38 KPFAC--DLCGRAFQRKVDLRRHKETQHTE 65
+PF C CG+ F R +L+RHK T E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 12 HKCQVCGKAFSQSSNLITHSR--------KHTGFKPFACDLCGRA 48
H+C C + F S+NL TH R K +P++ + RA
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERA 95
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 38 KPFACDLCGRAFQRKVDLRRHK 59
K CD+CG+ F+ K L+ HK
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHK 29
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 11 PHKCQV--CGKAFSQSSNLITHSRKHTG 36
P +C CGK FS NL TH + HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHT 35
G++P C++C AF+ +N H + HT
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 35 TGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+G +PF C +C AF K + RH + HT+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKV-HTD 32
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
G KP +C C +FS+S +L H ++H
Sbjct: 4 GIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 38 KPFACDL--CGRAFQRKVDLRRHKET 61
+P++CD C +AF R DL RHK++
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 27 LITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
L H R H +PF C+ C ++ +L +H + H +M
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTG 36
K HKC C K F+Q NL H + H
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIA 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,126,832
Number of Sequences: 62578
Number of extensions: 62928
Number of successful extensions: 595
Number of sequences better than 100.0: 192
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 397
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)