RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2647
(72 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 89.0 bits (221), Expect = 9e-26
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHT---GFKPFACDLCGRAFQRKVDLRRHKETQHT 64
G +C++CG Q ++L H RKH F C+ CG+ F++ + H+ H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 65 EMRPVP 70
+ P
Sbjct: 64 ALLLAP 69
Score = 37.0 bits (86), Expect = 3e-05
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
+G C++CG ++K L H+ H E
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK-HAETV 34
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 84.1 bits (209), Expect = 9e-24
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG--FKPFACDLCGRAFQRKVDLRRHKETQHTE 65
GEKP++C +C F+QS + H + F C C RK DL H QH+
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Query: 66 MRP 68
P
Sbjct: 72 SGP 74
Score = 49.1 bits (118), Expect = 6e-10
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 7 HGE--KPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFA 41
H E C C ++ S+L H RK H+ P +
Sbjct: 39 HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 46.7 bits (112), Expect = 4e-09
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 26 NLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ + R H+G KP+ C +C F + ++ H +HTE
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA 44
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 82.1 bits (204), Expect = 6e-23
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
G+KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH + H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HL 86
Score = 72.5 bits (179), Expect = 5e-19
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
E+P+ C V C + FSQS +L H R HTG KPF C +C R F R L H T HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 58
Score = 53.6 bits (130), Expect = 1e-11
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
GEKP C +CG+ F++S H++ H K
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 81.3 bits (202), Expect = 2e-22
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
PHKC+VCGK FS+ L TH R HTG KP+ C C A L +H H++ R
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDER 63
Query: 68 P 68
P
Sbjct: 64 P 64
Score = 80.9 bits (201), Expect = 2e-22
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
G KP+KC+ C A + SS+L H R H+ +PF C +C A + L H + HT
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS-HT 88
Score = 62.8 bits (154), Expect = 3e-15
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
E+P KCQ+C A SS L H R HTG +
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 36.2 bits (85), Expect = 7e-05
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
P C++CG+ F RK L+ H HT
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC-HT 32
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 80.2 bits (199), Expect = 5e-22
Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
+K C+ CG+ F++S NL+ H R HT +P+ CD+C +AF+R+ LR H+ H++ +
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSKEK 72
Query: 68 P 68
P
Sbjct: 73 P 73
Score = 78.6 bits (195), Expect = 2e-21
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
E+P+ C +C KAF + +L H H+ KPF C CG+ F + L HK H +
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL-HMQTS 100
Query: 68 P 68
Sbjct: 101 S 101
Score = 62.1 bits (152), Expect = 8e-15
Identities = 15/35 (42%), Positives = 15/35 (42%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
EKP KCQ CGK F QS L H H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 48.6 bits (117), Expect = 2e-09
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
SS K F C CGR F + +L H+ T HT
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HT 41
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 79.0 bits (196), Expect = 8e-22
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+KP+KC C +F NL +H HTG KP+ C++CG F R +L+ H H+
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HS 69
Score = 59.4 bits (145), Expect = 5e-14
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF 40
GEKP++C +CG F++ +NL TH+R H+G KP+
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 48.2 bits (116), Expect = 1e-09
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ HS KP+ CD C +F+ K +L HK HT
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HT 41
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 79.1 bits (196), Expect = 1e-21
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
KP +C++C + FS+S +L TH R HTG KPFACD+CGR F R + +RH++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHI 56
Score = 72.5 bits (179), Expect = 3e-19
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP C +CG+ F++S H P D + L
Sbjct: 28 GEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKK 83
Score = 49.0 bits (118), Expect = 8e-10
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 7 HGEKPHKCQVCGKAFSQSSNL---ITHSRKHTGFK 38
P + S++ +L + +K G +
Sbjct: 54 QHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 78.6 bits (195), Expect = 1e-21
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ +KC CGK+FS SS+L H R HTG KP+ CD CG+AF ++ L H HT
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HT 70
Score = 59.8 bits (146), Expect = 3e-14
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPF 40
GEKP+KC CGKAF Q S+LI H R HTG P
Sbjct: 43 GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 50.1 bits (121), Expect = 2e-10
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 23 QSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S + + + + CD CG++F DL +H+ T HT +P
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKP 46
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 78.7 bits (195), Expect = 2e-21
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
G C++CGK F +L H H+G KP++C +CG F+RK + H + H
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HD 59
Score = 77.1 bits (191), Expect = 8e-21
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG--FKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP+ C VCG F + + H R H G KP+ C CG+ F R L H + H+
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 37.1 bits (87), Expect = 4e-05
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+G AC++CG+ F+ L RHK + H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HS 31
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 79.1 bits (196), Expect = 2e-21
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
HG + H C CGKAF +SS L H HTG KPF C CG+ F +LR H HT
Sbjct: 30 HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HT 88
Query: 65 EMRP 68
RP
Sbjct: 89 GDRP 92
Score = 71.4 bits (176), Expect = 3e-18
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
GEKP +C CGK FS NL TH R HTG +P+ C C + F + +L+ H T H
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT-H 117
Query: 64 T 64
Sbjct: 118 A 118
Score = 63.7 bits (156), Expect = 3e-15
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ C C K F +S + H H G + C CG+AF L+RH+ HT
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV-HT 58
Score = 55.2 bits (134), Expect = 6e-12
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPF 40
G++P+ C C K F+QS+NL +H H K
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 77.5 bits (192), Expect = 3e-21
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
GEKP+ C CGKAFS+SS L+ H R HTG KP+ C CG+AF + L H+ HT
Sbjct: 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP 69
Query: 68 P 68
Sbjct: 70 S 70
Score = 60.2 bits (147), Expect = 2e-14
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
GEKP+KC CGKAFSQ+S LI H R HT
Sbjct: 39 GEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 41.7 bits (99), Expect = 4e-07
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 27 LITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S H+G KP+ C CG+AF R L +H+ HT +P
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEKP 42
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 79.1 bits (196), Expect = 3e-21
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
E+ C VC + F + L H HTG P+ C C + F +K DL+ H H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 76.4 bits (189), Expect = 3e-20
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ--HTE 65
G +C C K F L H+RKHTG KPF C CG+ + RK +L H+ +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 66 MRP 68
+
Sbjct: 64 EQV 66
Score = 72.9 bits (180), Expect = 6e-19
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRK---HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP +C CGK + + NL+ H + + + F C +C F+R+++LR H + HT
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HT 90
Score = 35.6 bits (83), Expect = 2e-04
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+G C C + F K L+ H HT
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK-HT 31
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 77.8 bits (193), Expect = 3e-21
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+P+ CQ CGK F Q S++ H+ HTG KP C +CG+AF + +L H HT
Sbjct: 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK-HT 81
Score = 69.4 bits (171), Expect = 7e-18
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
C++CGK+F +SS L TH H+ +P+ C CG+ F +K D+++H HT +P
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKP 57
Score = 60.1 bits (147), Expect = 3e-14
Identities = 29/29 (100%), Positives = 29/29 (100%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKPHKCQVCGKAFSQSSNLITHSRKHTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 23.5 bits (52), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQHTEMRP 68
F C +CG++F+R L H H++ RP
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTRP 29
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 76.8 bits (190), Expect = 4e-21
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSR--KHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
GE ++C+VC + ++ SN H K + C C + F RK ++ H + H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 48.3 bits (116), Expect = 8e-10
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
K + C C K F++ N+ H +
Sbjct: 37 NVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 41.8 bits (99), Expect = 4e-07
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKET-QHTEMRP 68
G + C +C R + + RH T ++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV 40
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 76.8 bits (190), Expect = 5e-21
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
P KC C + S + L H R H +PF C+ C ++ +L +H +
Sbjct: 6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FH 61
Score = 55.2 bits (134), Expect = 2e-12
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
++P KC C Q SNL H +K G
Sbjct: 34 TDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 39.8 bits (94), Expect = 2e-06
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ P C C + K LR H+ H RP
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRP 37
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 76.4 bits (189), Expect = 5e-21
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ C+VC +AF++ +L H R HT KP+ C LC RAF R+ L RH + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 51.3 bits (124), Expect = 6e-11
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRK-HTG 36
EKP+ C +C +AF++ LI H++K H+G
Sbjct: 27 NEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 78.6 bits (195), Expect = 2e-20
Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP+ C CGK+FS+S +L H R HTG KP+ C CG++F K DL RH+ T HT
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HT 73
Score = 78.6 bits (195), Expect = 2e-20
Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP+KC CGK+FS+ NL TH R HTG KP+ C CG++F R+ L H+ T HT
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT-HT 185
Score = 78.3 bits (194), Expect = 2e-20
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP+ C CGK+FSQ ++L H R HTG KP+ C CG++F R+ +L H+ T HT
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT-HT 157
Score = 78.3 bits (194), Expect = 3e-20
Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP+KC CGK+FSQ +NL H R HTG KP+AC CG++F + LR H+ T HT
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HT 129
Score = 77.9 bits (193), Expect = 4e-20
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP+KC CGK+FS +L H R HTG KP+ C CG++F ++ +LR H+ T HT
Sbjct: 46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HT 101
Score = 58.2 bits (142), Expect = 2e-12
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKP 39
GEKP+KC CGK+FS+ L H R HTG K
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 54.8 bits (133), Expect = 3e-11
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 20 AFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ SS+ + + G KP+AC CG++F R L H+ T HT
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HT 45
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 75.9 bits (188), Expect = 3e-20
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
G+K + CQ CGK+F+ S H H G +P+ C +CG+ F+ K L H + HT ++
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK 64
Query: 68 P 68
P
Sbjct: 65 P 65
Score = 74.4 bits (184), Expect = 1e-19
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMR 67
G +P+ C VCGK F +L+ H + HTG KP+ C++C + F + RH + +
Sbjct: 34 GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH---VTSCTK 90
Query: 68 P 68
Sbjct: 91 S 91
Score = 64.0 bits (157), Expect = 2e-15
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLR 56
G KP++C +C K F + H + K + +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 40.9 bits (97), Expect = 2e-06
Identities = 2/22 (9%), Positives = 9/22 (40%)
Query: 8 GEKPHKCQVCGKAFSQSSNLIT 29
K ++ + +++S +
Sbjct: 88 CTKSYEAAKAEQNTTEASGPSS 109
Score = 34.7 bits (81), Expect = 4e-04
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G K + C CG++F K RH H +RP
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRP 37
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 75.2 bits (186), Expect = 7e-20
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
GEKP++C C + FS+S L H R+HTG KPF C C R F R L+ H T HT
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HT 90
Score = 74.1 bits (183), Expect = 2e-19
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET 61
G KP +C+ C + FS+S +L TH+R HTG KPF+C C + F R +L RH
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 72.6 bits (179), Expect = 8e-19
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
++P C C K + + S+L HSRKHTG KP+ CD C R F R L+RH+ H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-H 61
Query: 64 T 64
T
Sbjct: 62 T 62
Score = 44.4 bits (106), Expect = 9e-08
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKH 34
GEKP C+ C K F++S L+ H H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 74.1 bits (183), Expect = 9e-20
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG----FKPFACDLCGRAFQRKVDLRRHKETQH 63
GEKP+ C C K F Q L H +++ F C CG+ F R+ + RH +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-C 70
Query: 64 T 64
Sbjct: 71 A 71
Score = 64.9 bits (159), Expect = 5e-16
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF 49
C CGK F++ + + H+ G + G +
Sbjct: 44 VPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 44.8 bits (107), Expect = 3e-08
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 26 NLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+ + R HTG KP+AC C + F++K L H + H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 41
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 73.0 bits (180), Expect = 1e-18
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKETQH 63
GEKPHKC C K++S+ NL TH R HTG KP+ C + C +AF D +H+ H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 64 TEMRP 68
+ +P
Sbjct: 124 SNEKP 128
Score = 64.9 bits (159), Expect = 2e-15
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 8 GEKPHKCQVCG-----KAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKE 60
K C G + F L+ H R+HTG KP C C +++ R +L+ H
Sbjct: 31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
Query: 61 TQHT 64
+ HT
Sbjct: 91 S-HT 93
Score = 64.5 bits (158), Expect = 3e-15
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 8 GEKPHKCQ--VCGKAFSQSSNLITH-SRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQ 62
GEKP+ C+ C KAFS +S+ H +R H+ KP+ C L C + + LR+H +T
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT- 152
Query: 63 HT 64
Sbjct: 153 VH 154
Score = 59.9 bits (146), Expect = 2e-13
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 9 EKPHKCQVCGKAFSQSSNLITH---SRKHTGFKPFACDLCG-----RAFQRKVDLRRHKE 60
E + C + F L+ H H K F C G R F+ + L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 61 TQHT 64
HT
Sbjct: 61 R-HT 63
Score = 48.0 bits (115), Expect = 7e-09
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
EKP+ C++ C K ++ S+L H + G
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 70.3 bits (173), Expect = 3e-18
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 6 WH-GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
H GEKP+ C CG F++S L H RKHTG +PF C C RAF R L H +
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 65.6 bits (161), Expect = 2e-16
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTE 65
CGK +++SS+L H R HTG KP+ CD CG F R +L RH HT
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTG 62
Query: 66 MRP 68
RP
Sbjct: 63 HRP 65
Score = 44.1 bits (105), Expect = 6e-08
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
G +P +CQ C +AFS+S +L H ++H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 29.0 bits (66), Expect = 0.037
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 33 KHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
K T CG+ + + L+ H T HT +P
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKP 35
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 70.3 bits (173), Expect = 4e-18
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 6 WH-GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ 62
H GEKP+KC + C F++S L H RKHTG KPF C +C R+F R L H +
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR- 97
Query: 63 HT 64
H
Sbjct: 98 HQ 99
Score = 61.9 bits (151), Expect = 9e-15
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
+ H C C K +++SS+L H R HTG KP+ C C F R +L RH HT
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HT 71
Query: 65 EMRP 68
+P
Sbjct: 72 GAKP 75
Score = 32.6 bits (75), Expect = 0.003
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 20 AFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ S + R H P C + + + L+ H T HT +P
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRT-HTGEKP 45
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 71.2 bits (175), Expect = 6e-18
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQH 63
GEKP C CGK F++S NL H R HTG KPF C+ C R F D ++H H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-H 145
Query: 64 TEMRP 68
T +
Sbjct: 146 TSDKS 150
Score = 63.1 bits (154), Expect = 1e-14
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 7 HGEKPHK---------CQVCGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDL 55
H P + C GK+F L+ H R HTG KPF C CG+ F R +L
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL 108
Query: 56 RRHKETQHT 64
+ HK T HT
Sbjct: 109 KIHKRT-HT 116
Score = 61.9 bits (151), Expect = 3e-14
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA---------CDLCGRAFQRKVDLRRH 58
+ + C + FS L+TH P C G++F+ K L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 59 KETQHT 64
HT
Sbjct: 82 IRV-HT 86
Score = 57.7 bits (140), Expect = 1e-12
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD 43
GEKP KC+ C + F+ SS+ H HT K
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 48.4 bits (116), Expect = 4e-09
Identities = 7/49 (14%), Positives = 12/49 (24%)
Query: 17 CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
G + ++ C R F +L H +H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 71.9 bits (177), Expect = 7e-18
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQH 63
GEKP C + C K F+ +L HS HTG K F CD C F K ++++H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-F 97
Query: 64 TEMRPVP 70
++
Sbjct: 98 HNIKICV 104
Score = 70.7 bits (174), Expect = 2e-17
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQH 63
K + C CG A++++ L H KHTG KPF C C + F L RH T H
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-H 67
Query: 64 T 64
T
Sbjct: 68 T 68
Score = 67.6 bits (166), Expect = 3e-16
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+ P++C + C K FS S L H + H G+ D C + +H H +
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 64.2 bits (157), Expect = 6e-15
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 7 HGEK--PHKCQV--CGKAFSQSSNLITHSRKHTGFKPFAC--DLCGRAFQRKVDLRRHKE 60
H K + C CGKAF + + L H HT P+ C + C + F L+RH++
Sbjct: 98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
Query: 61 TQHT 64
H
Sbjct: 158 V-HA 160
Score = 38.0 bits (89), Expect = 4e-05
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 28 ITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHT 64
+ +K + C CG A+ + L+ H HT
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HT 38
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 68.0 bits (167), Expect = 9e-18
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDLCGRAF 49
KP+ CQ CGK FS+ +L H ++ HT +P C +
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 39.5 bits (93), Expect = 2e-06
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ + KP+ C CG+ F R L H + HT RP
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP 41
Score = 36.0 bits (84), Expect = 4e-05
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 8 GEKPHKCQVCGKAFSQ 23
E+PHKCQV S
Sbjct: 38 SERPHKCQVWVSGPSS 53
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 68.3 bits (168), Expect = 2e-17
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSR-KHTGFKPFACD--LCGRAFQRKVDLRRHKETQ 62
G C CG+ FS L H + +H K F+C CG++F K L+ H +
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL- 62
Query: 63 HTEMRP 68
H++ R
Sbjct: 63 HSDTRD 68
Score = 66.0 bits (162), Expect = 1e-16
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 IWH-GEKPHKCQ--VCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAF 49
H +K C CGK+F+ +L H + H+ + + C+ G +
Sbjct: 31 YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 39.1 bits (92), Expect = 4e-06
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 34 HTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRP 68
+G CD CGR F + L HK+ QH +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS 38
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 66.1 bits (162), Expect = 1e-16
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 8 GEKPHKC--QVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
+ P++C + C K FS S L H + H G+ D C + +H H
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 56.9 bits (138), Expect = 6e-13
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 12 HKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMR 67
+ C CGKAF + + L H HT P+ C C + F L+RH++ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP 60
Query: 68 P 68
Sbjct: 61 C 61
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 63.7 bits (156), Expect = 4e-16
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE+ H+C CGK F Q+SN I H R HTG KP
Sbjct: 9 GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 7e-06
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ G + C CG+ F + + +H+ HT +P
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKP 40
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 1e-15
Identities = 23/35 (65%), Positives = 25/35 (71%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEK +KC VCGK FSQSS+L TH R HTG KP
Sbjct: 9 GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 3e-06
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ G K + CD+CG+ F + L+ H+ HT
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HT 36
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 62.2 bits (152), Expect = 2e-15
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP C C KAFS S L+ H + H KP
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 38.3 bits (90), Expect = 5e-06
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G KPF C C +AF K L H++T H E +P
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKP 38
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 2e-15
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE P C CGK F+ +NLI H + HTG +P
Sbjct: 9 GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 39.8 bits (94), Expect = 1e-06
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG PF C CG+ F K +L H++ HT RP
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERP 40
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 2e-15
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
GEKP KC +CGK+F S L HS HT KP
Sbjct: 9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 41.7 bits (99), Expect = 2e-07
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KPF CD+CG++F + L RH HT
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HT 36
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 62.7 bits (153), Expect = 2e-15
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+P+ C V C + FS+S L H R HTG KPF C +C R F R L H T HT
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT 73
Score = 35.0 bits (81), Expect = 1e-04
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 21 FSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRP 68
+NL+ + +P+AC + C R F R +L RH HT +P
Sbjct: 3 PHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRI-HTGQKP 49
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 3e-15
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC+ CGK ++ NL H + HTG +P
Sbjct: 9 GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+ + K +L H++ HT RP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGERP 40
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 3e-15
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE+P+ C VCGKAF+ SNLI H + HTG KP
Sbjct: 9 GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 3e-06
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG +P+ C +CG+AF + +L +H++ HT
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HT 36
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 3e-15
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP +C C KAF+ SNLI H R HTG KP
Sbjct: 9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 9e-07
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KPF C C +AF K +L H+ T HT +P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKP 40
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-15
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEK + C+ CGK+FS++ L+ H R H+G KP
Sbjct: 9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 9e-07
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG K + C CG++F R L +H+ H+
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HS 36
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 4e-15
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC VC K+F S+L H R HTG KP
Sbjct: 9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 4e-06
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ CD+C ++F+ L H+ HT
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HT 36
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 61.0 bits (149), Expect = 4e-15
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE P++C CGKAF++ LI+H R H G +
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.0 bits (84), Expect = 3e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S +G P+ C CG+AF RK L H+ T H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRT-HAGESG 38
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-15
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C CGKAF+ SNL TH + HTG KP
Sbjct: 9 GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C CG+AF + +L H++ HT
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HT 36
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 61.0 bits (149), Expect = 5e-15
Identities = 18/35 (51%), Positives = 19/35 (54%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G KP+ C C K FS S LI H R HTG KP
Sbjct: 9 GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 39.1 bits (92), Expect = 2e-06
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C C + F K L H+ + HT
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HT 36
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-15
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C CGKAF+ SNLI H + HT KP
Sbjct: 9 GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 38.6 bits (91), Expect = 3e-06
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C CG+AF + +L +H++ HT
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HT 36
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-15
Identities = 18/35 (51%), Positives = 18/35 (51%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP KC CGKAF S LI H R H K
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 39.1 bits (92), Expect = 2e-06
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP C CG+AF K L H+ T H + +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKH 40
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.0 bits (149), Expect = 5e-15
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C C KAF+ SNL+ H R HTG +
Sbjct: 9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 40.9 bits (97), Expect = 4e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ C +AF K +L H+ T HT
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HT 36
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 5e-15
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KCQVCGKAF SS+L+ H H+G +P
Sbjct: 9 GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 37.9 bits (89), Expect = 8e-06
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
TG KP+ C +CG+AF+ L +H H+ RP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERP 40
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 6e-15
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
EKP+KC+ CGK +++ NL H R H G K
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 40.2 bits (95), Expect = 1e-06
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ + KP+ C+ CG+ + R+++L H+ H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HM 36
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 6e-15
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC+ CGK F +L TH HTG KP
Sbjct: 9 GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 9e-07
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG+ F + DL H HT
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HT 36
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 7e-15
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCG 46
GEKP KC+ CGK F +S +H R H+G KP G
Sbjct: 9 GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 39.8 bits (94), Expect = 1e-06
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ +G KPF C+ CG+ F H+ + H+
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HS 36
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 7e-15
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G++P++C CGKAF S+LI H R HTG KP
Sbjct: 9 GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-06
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG +P+ C CG+AF+ K L H+ + HT +P
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKP 40
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 8e-15
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G+K KC C K F+QSS+L H R HTG KP
Sbjct: 9 GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 6e-06
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ G K F C+ C + F + L H+ HT
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HT 36
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 8e-15
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKPH+C+ CGK+FS +S LI H R HTG P
Sbjct: 9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 36.4 bits (85), Expect = 2e-05
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP C CG++F L H+ HT P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENP 40
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 8e-15
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C CGK+FS S L H HT KP
Sbjct: 9 GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 38.3 bits (90), Expect = 5e-06
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ G KP+ C CG++F L +H T HT +P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKP 40
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 9e-15
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G KP+ C CGKAFS S+L TH HTG KP
Sbjct: 9 GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 4e-06
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG+AF L H+ HT
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HT 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.2 bits (147), Expect = 9e-15
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE P++C CGK FS+ L++H + H+G +
Sbjct: 9 GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 38.2 bits (90), Expect = 5e-06
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG P+ C CG+ F RK L H++T H+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSG 40
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 9e-15
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C CGKAF S+ L+ H R HTG KP
Sbjct: 9 GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ +G KP+ CD CG+AF +L RH+ HT +P
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKP 40
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.3 bits (147), Expect = 9e-15
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C CGKAFS S LI H R H+G KP
Sbjct: 9 GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 39.8 bits (94), Expect = 1e-06
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ G KP+ C CG+AF K L H T H+ +P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKP 40
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 9e-15
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE P++C CGKAFS+ LI+H R H G KP
Sbjct: 9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG P+ C CG+AF RK L H+ T H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT-HA 36
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 60.3 bits (147), Expect = 1e-14
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C+ CGK+F +S L+ H R H+G KP
Sbjct: 9 GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 37.9 bits (89), Expect = 8e-06
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C CG++F+ L +H+ H+ +P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKP 40
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 60.2 bits (147), Expect = 1e-14
Identities = 21/35 (60%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP +C CGK+FS SS L TH R HTG KP
Sbjct: 9 GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 9e-06
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KPF C CG++F L H+ HT
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI-HT 36
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-14
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP KC+ CGK F+Q+S L +H R HTG KP
Sbjct: 9 GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ +G KPF C+ CG+ F + L H+ HT
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HT 36
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-14
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C CGKAF+Q +NL H R HTG KP
Sbjct: 9 GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 4e-06
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C CG+AF +K +L +H+ HT
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HT 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-14
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C VCGKAFS +L H R H+G KP
Sbjct: 9 GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 37.1 bits (87), Expect = 1e-05
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
TG KP+ C +CG+AF + L H+ H+
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HS 36
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-14
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C +CGK+F++ S L H + HTG KP
Sbjct: 9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 7e-06
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C +CG++F +K L H++ HT +P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKP 40
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 1e-14
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
GEKP+ C VCGKAF S++L H R HT
Sbjct: 9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 38.3 bits (90), Expect = 6e-06
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
TG KP++C++CG+AF L +H HT
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HT 36
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGKAF++ S L H + HTG +
Sbjct: 9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 39.8 bits (94), Expect = 1e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C CG+AF RK L H+++ HT R
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERH 40
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 1e-14
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGKAF S+L H H+G KP
Sbjct: 9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 38.7 bits (91), Expect = 4e-06
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG+AF+ + L H+ T H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HS 36
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C+ CGKAF S L H R HTG KP
Sbjct: 9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG+AF L+ H+ HT
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HT 36
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP KC CGK FS+ S L H + HTG KP
Sbjct: 9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 1e-06
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KPF C CG+ F R+ L H + HT
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HT 36
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE+ ++C CGKAF++ S LI H R HTG KP
Sbjct: 9 GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG + + C CG+AF RK L H+ HT +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKP 40
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 9 GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 5e-06
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ +G KP+ C+ CG+ F + L H HT +P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKP 40
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGKAF SNL TH HTG KP
Sbjct: 9 GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+AF+ +L H+ HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKP 40
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.8 bits (146), Expect = 1e-14
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G KP+ C CGKAF S LI H+R HTG +
Sbjct: 9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.5 bits (96), Expect = 6e-07
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG+AF+ K L H T HT
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HT 36
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE+PHKC CGK+F QS++LI H R HTG KP
Sbjct: 9 GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 8e-06
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG +P C+ CG++F + L +H+ HT +P
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKP 40
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C VC KAFS ++L H R H+G KP
Sbjct: 9 GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 6e-06
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ CD+C +AF L +H+ H+
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HS 36
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 59.8 bits (146), Expect = 1e-14
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C+ CGKAFSQ+++LI H R HTG KP
Sbjct: 9 GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 2e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C CG+AF + L +H+ HT +P
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKP 40
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 2e-14
Identities = 22/35 (62%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGKAFSQ+S L H R HTG KP
Sbjct: 9 GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 6e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+AF + L RH+ HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKP 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 2e-14
Identities = 20/35 (57%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C CGK FSQ S L H R HTG KP
Sbjct: 9 GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-06
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ +G KP+ C+ CG+ F +K L H+ T HT
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HT 36
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 59.5 bits (145), Expect = 2e-14
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G+KP +C CGK+F NL+TH R HTG K
Sbjct: 9 GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 39.4 bits (93), Expect = 2e-06
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KPF C CG++F+ K +L H+ HT
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HT 36
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G P+KC C K+FS L+ H R HT KP
Sbjct: 9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 36.4 bits (85), Expect = 3e-05
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ G P+ C C ++F K+ L H+ HT +P
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREKP 40
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G KP++C CGKAFSQ+S L H R HTG KP
Sbjct: 9 GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 6e-06
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+AF + L RH+ HT +P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKP 40
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEK +KC CGK FS++S L H + HTG KP
Sbjct: 9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 1e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG K + C+ CG+ F R L +H++ HT
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HT 36
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE+P KC CGK F + S+L H R H+ K
Sbjct: 9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 37.5 bits (88), Expect = 1e-05
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ +G +PF C+ CG+ F R+ L H H+ +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKS 40
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK+F+ S L H + HTG +
Sbjct: 9 GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 39.4 bits (93), Expect = 1e-06
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C CG++F K LR H++ HT R
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERH 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEK KC+ C FSQ+S+L H H G KP
Sbjct: 9 GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 38.7 bits (91), Expect = 4e-06
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ G K + C C F + LR H+ H +P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKP 40
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C CGK+F + S L H R HTG P
Sbjct: 9 GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 38.3 bits (90), Expect = 5e-06
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C CG++F +K L H+ HT P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENP 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 9 GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 38.3 bits (90), Expect = 5e-06
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+ F + L H+ HT ++P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKP 40
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
GEKP+KC CGK + + +L H R HTG K
Sbjct: 9 GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 39.8 bits (94), Expect = 1e-06
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ +G KP+ C CG+ ++R++DL H+ HT
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HT 36
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 19/35 (54%), Positives = 19/35 (54%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP C CGKAFS L H R HTG KP
Sbjct: 9 GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KPF C CG+AF + L +H+ HT +P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKP 40
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 2e-14
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C+VC KAF+Q ++L H + HTG KP
Sbjct: 9 GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 4e-06
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C +C +AF +K L +H++T HT
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HT 36
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 59.1 bits (144), Expect = 3e-14
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
G++ ++CQ CGK+F Q +L H R HTG P +
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 34.9 bits (81), Expect = 1e-04
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
S +G + + C CG++F++K L H+ HT
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERI-HT 34
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-14
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGKAF +S+ H R HTG +P
Sbjct: 9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 38.7 bits (91), Expect = 4e-06
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C CG+AF +H+ HT RP
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRP 40
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 3e-14
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK F+Q+S+L+ H HTG KP
Sbjct: 9 GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 5e-06
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKP 40
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 3e-14
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
K H+C CG+ F+ S+L H R HTG KP
Sbjct: 9 STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 6e-06
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ + K C CGR F K L +H+ HT
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HT 36
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 3e-14
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGKAF + ++L H R HTG++P
Sbjct: 9 GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 38.2 bits (90), Expect = 6e-06
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ +G KP+ C CG+AF R L H+ HT RP
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRP 40
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-14
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G K +C CGKAF++ S L H + HTG KP
Sbjct: 9 GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 2e-06
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG K F C CG+AF RK L H++ HT
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HT 36
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-14
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE+ ++C CGKAF Q S L H R H G KP
Sbjct: 9 GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 38.3 bits (90), Expect = 5e-06
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG + + C CG+AF +K L H+ H +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKP 40
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 59.1 bits (144), Expect = 3e-14
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
GEKP++C CGKAFSQ +LI H R HTG P +
Sbjct: 8 GEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 39.9 bits (94), Expect = 1e-06
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S G KP+ CD CG+AF +K L H HT P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSGP 39
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-14
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G+KP++C+ C K F Q +L H R HTG +
Sbjct: 9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 37.1 bits (87), Expect = 1e-05
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ +G KP+ C C + F + L +HK HT R
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERS 40
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 3e-14
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP KC+ CGKAF Q+ +L +H R HTG KP
Sbjct: 9 GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 5e-06
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ +G KPF C CG+AF++ + L H HT
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HT 36
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 3e-14
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK F +S L H R HTG KP
Sbjct: 9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 4e-06
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG+ F+ L RH+ HT
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HT 36
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-14
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP +C+ CGK F+Q+S+L +H R HTG KP
Sbjct: 9 GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 4e-06
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ +G KPF C+ CG+ F + L H+ HT +P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKP 40
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.6 bits (143), Expect = 4e-14
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK F ++S+L H HTG KP
Sbjct: 9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 5e-06
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C CG+ F+R L RH+ HT
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HT 36
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 4e-14
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C CGKAFS S+L TH HTG KP
Sbjct: 9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 37.1 bits (87), Expect = 1e-05
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG+AF + L H+ HT
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HT 36
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-14
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP KC CGK+++Q +L H R HTG KP
Sbjct: 9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 3e-06
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KPF C CG+++ ++V L +H+ HT +P
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKP 40
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 5e-14
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP++C CGKAF S LI H R H G +
Sbjct: 9 GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 40.6 bits (96), Expect = 6e-07
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ +G KP+ C+ CG+AF K L H+ T H +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSG 40
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-14
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK F+Q+S+L H HTG KP
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 3e-06
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-14
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
G+KP+KC CGK F+Q+S+L H HTG KP
Sbjct: 9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 3e-06
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKP 40
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 5e-14
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C CGK+F Q S+L H R HTG KP
Sbjct: 9 GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 7e-07
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ TG KP+ C+ CG++F +K L RH+ HT
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HT 36
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 6e-14
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 38.7 bits (91), Expect = 4e-06
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C+ CG+ F + L RH+ HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKP 40
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 57.9 bits (141), Expect = 7e-14
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
GEKP+KC+ CG F Q ++L H HTG P +
Sbjct: 8 GEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 39.8 bits (94), Expect = 1e-06
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
S G KP+ C+ CG F + LR H HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HT 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.0 bits (141), Expect = 9e-14
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
GEKP +C+ CG FS S +L H R H P
Sbjct: 9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 42.2 bits (100), Expect = 1e-07
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KPF C CG F L +H + H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDP 40
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 57.5 bits (140), Expect = 1e-13
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
GEKP+ C++CG F L +H R HTG P +
Sbjct: 8 GEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 39.4 bits (93), Expect = 2e-06
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
S G KP+ C++CG F+ L+ H HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HT 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 57.2 bits (139), Expect = 2e-13
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFAC 42
G+KP++C CGKAF Q+++LI H R HTG KP
Sbjct: 9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 42.2 bits (100), Expect = 2e-07
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KP+ C CG+AF + L RH HT +P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-13
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GE+P+ C CGK F + S+LI H ++H K
Sbjct: 9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 39.4 bits (93), Expect = 2e-06
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
+G +P+ C+ CG+ F R L H + H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKS 40
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 57.0 bits (138), Expect = 3e-13
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 8 GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKET 61
+ H C CGK + +SS+L H+R HTG KPF+C C R F R +L RH+ T
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 37.0 bits (86), Expect = 3e-05
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 6 WH-GEKPHKCQV--CGKAFSQSSNLITHSRKH 34
H GEKP C C + F++S L H R H
Sbjct: 41 THTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.0 bits (73), Expect = 0.003
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 24 SSNLITHSRKHTGFKPFACDL--CGRAFQRKVDLRRHKETQHTEMRP 68
SS + + C CG+ + + L+ H T HT +P
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKP 47
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.1 bits (136), Expect = 4e-13
Identities = 16/36 (44%), Positives = 16/36 (44%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
GEK H C CGK F S L H R H G K
Sbjct: 9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 35.6 bits (83), Expect = 5e-05
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+G K CD CG+ F LR H+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HM 36
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 55.4 bits (134), Expect = 8e-13
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
GE P+ C CGK+F+Q +L H R + P +
Sbjct: 8 GETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 36.1 bits (84), Expect = 3e-05
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
S G P+ C CG++F ++ L H+ + ++ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGP 39
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 53.8 bits (130), Expect = 4e-12
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 6 WH-GEKPHKCQV--CGKAFSQSSNLITHSRKHTGFKPFACD 43
GEKP C CG FS+S L H R H+G KP
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 41.1 bits (97), Expect = 4e-07
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 29 THSRKHTGFKPFACD--LCGRAFQRKVDLRRHKETQHTEMRP 68
+ TG KPFAC CG F R +L RH+ + H+ ++P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKP 42
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 51.6 bits (123), Expect = 3e-11
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 12 HKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+ C+ CG + S L H R HT +P+ C C +F+ K +L +H +++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 37.8 bits (87), Expect = 1e-05
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
+P+ C C +F NL H + K
Sbjct: 26 DVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.4 bits (121), Expect = 8e-11
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
GEKP+ C C + FS ++ L+ H + HT +
Sbjct: 7 GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 34.6 bits (80), Expect = 1e-04
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
S +G KP++C C F L +H++ HT
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKM-HT 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 48.8 bits (116), Expect = 3e-10
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLC 45
K C++CGK F +L H H+G KP++
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.1 bits (83), Expect = 4e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
K AC++CG+ F+ L RHK + H+ +P
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKP 40
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.3 bits (116), Expect = 5e-10
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
K + C CGKAF++ +L H + HT +
Sbjct: 9 DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.6 bits (88), Expect = 1e-05
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
T K + C+ CG+AF R L RH++ HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HT 36
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 48.1 bits (114), Expect = 1e-09
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
I G++ KC CG F + S L K C+ C + ++ L + + +
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGN-ES 63
Query: 65 EMRP 68
+
Sbjct: 64 GKKT 67
Score = 37.3 bits (86), Expect = 3e-05
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
K C+ C K Q + L +G K
Sbjct: 37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
Score = 35.8 bits (82), Expect = 9e-05
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQ 62
S + + H G + C CG F R+ L R K
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPM 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.9 bits (106), Expect = 1e-08
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GE P KC C + F+Q + L+ H R H
Sbjct: 8 AGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 34.4 bits (79), Expect = 2e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 29 THSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
+ G PF C C R F ++ L +H+ T + P
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.3 bits (106), Expect = 6e-08
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
C +C FS S +L H R C +C + F H +H
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 33.0 bits (74), Expect = 0.002
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
K + S+ + F C LC F V L++H
Sbjct: 48 KTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK 101
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 43.2 bits (101), Expect = 3e-07
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 22 SQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH-KETQHTEMRP 68
S S+ + TG F C C A+ V+L H ET H
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN 49
Score = 41.3 bits (96), Expect = 2e-06
Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 34/98 (34%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITH---------------------------------S 31
I+ G +C+ C A+ L H
Sbjct: 13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRH-KETQHTEMRP 68
K K C CG +F+ DL H +T+H +
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.8 bits (96), Expect = 4e-07
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
+R TG KPF C C R+F R L H++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 38.9 bits (91), Expect = 3e-06
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKH 34
G KP +C C ++FS+S +L H ++H
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 41.9 bits (98), Expect = 6e-07
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFAC 42
C GK+F L+ H R HTG K
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 40.0 bits (93), Expect = 3e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 5 IWHGEKPHKCQVCGKAFSQSSNLITH-SRKHTGFKPFA--------CDLCGRAFQRKVDL 55
I + + C + FS L+TH + +H G C G++F+ K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 56 RRH 58
H
Sbjct: 79 VNH 81
Score = 31.1 bits (70), Expect = 0.008
Identities = 6/35 (17%), Positives = 8/35 (22%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
C R F +L H +H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE 54
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 37.4 bits (86), Expect = 9e-06
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
KP +C +CGKAF+Q+S+LI H R+HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 36.2 bits (84), Expect = 3e-05
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
+K H C + CGK + ++S+L H R HTG
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.0 bits (84), Expect = 3e-05
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHTGFK 38
+P C CGK F++S L H R HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.0 bits (63), Expect = 0.040
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 38 KPFACD--LCGRAFQRKVDLRRHKETQHT 64
+PF C CG+ F R +L+RHK T HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT-HT 28
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.3 bits (88), Expect = 5e-05
Identities = 6/56 (10%), Positives = 14/56 (25%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+ S+ + + + C +C +DL H +
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 36.8 bits (84), Expect = 2e-04
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 7 HGEKPHKCQVCGKAFSQSSNLITHSRKH 34
++C VC +L H H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 36.8 bits (84), Expect = 7e-05
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
C C F H K K C C R F+ + RH+ H +
Sbjct: 44 VCPYCSLRFFSPELKQEHESKCEY-KKLTCLECMRTFKSSFSIWRHQVEVHNQ 95
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (80), Expect = 1e-04
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
EK H+C+ CG+ F Q +LI H H G K
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 22.5 bits (47), Expect = 7.9
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 38 KPFACDLCGRAFQRKVDLRRHK 59
K C CG F + V L H+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQ 32
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 34.2 bits (79), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
+ C+VC +AF++ +L H R HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (69), Expect = 0.005
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHT 64
+ F C++C RAF R+ L+RH + HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HT 26
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.9 bits (74), Expect = 8e-04
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
+ +CQ CGK F SS LI H H G
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAG 37
Score = 25.2 bits (54), Expect = 0.78
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
C CG+ F+ L H+ E P
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGESGP 41
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.3 bits (70), Expect = 0.002
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
KP+KC C A + +NL H RKHTG K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 23.3 bits (49), Expect = 4.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 38 KPFACDLCGRAFQRKVDLRRH 58
KP+ C C A K +L H
Sbjct: 8 KPYKCPQCSYASAIKANLNVH 28
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 30.6 bits (69), Expect = 0.005
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQH 63
K +AC LC RAF R+ L RH + H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 25.2 bits (55), Expect = 0.51
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRK-HTG 36
K + C +C +AF++ LI H++K H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 30.1 bits (67), Expect = 0.007
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
KP+ C C + F+ L H R HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.2 bits (49), Expect = 3.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTE 65
KP+ C C R F L+RH E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.008
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHT 35
EK KC C K FS S L H R HT
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.0 bits (51), Expect = 1.8
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
K F C+ C + F L +H+ ++ P
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGP 43
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.8 bits (66), Expect = 0.010
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTG 36
+P+ C VCGK FS + TH R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.9 bits (66), Expect = 0.011
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP+ C VCG F + + H R H G
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.0 bits (61), Expect = 0.071
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 31 SRKHTGFKPFACDLCGRAFQRKVDLRRHKETQH 63
S +G KP++C +CG F+RK + H +
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.6 bits (63), Expect = 0.027
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHT 35
G++P C++C AF+ +N H + HT
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 26.6 bits (58), Expect = 0.17
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRH 58
+G +PF C +C AF K + RH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH 26
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 28.1 bits (62), Expect = 0.038
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKH 34
KP+ C+ CGK F QSS L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 27.7 bits (61), Expect = 0.070
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 38 KPFACDL--CGRAFQRKVDLRRHKET 61
+P++CD C +AF R DL RHK++
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
Score = 24.6 bits (53), Expect = 0.84
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHT 35
++P+ C C KAF ++ +LI H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.4 bits (65), Expect = 0.075
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRH 58
+ K S H G K + + DLR
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 28.2 bits (62), Expect = 0.14
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 3 SNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHT 35
N+ GEK + + + +L
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 28.6 bits (63), Expect = 0.12
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSR 32
+ C VC FS S L H R
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLR 137
Score = 28.2 bits (62), Expect = 0.21
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQH 63
+ C++C F L H + H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDH 140
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.8 bits (61), Expect = 0.16
Identities = 4/47 (8%), Positives = 12/47 (25%)
Query: 24 SSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
+ + + + C C H +++H +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNS 49
Score = 27.8 bits (61), Expect = 0.16
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 9 EKPHKCQVCGKAFSQSSNLITH-SRKHTGFK---PFACDLCGRAFQRKVDLRRHKETQHT 64
E ++C+ C + H +H + C C +R L H H
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
Score = 24.3 bits (52), Expect = 3.6
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDLCGRAFQRKVD 54
+ C C + L H+ K H G + F + R Q +
Sbjct: 48 NSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFE 94
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 27.5 bits (60), Expect = 0.16
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQH 63
C LCG+ F LR+H E QH
Sbjct: 14 LPCGLCGKVFTDANRLRQH-EAQH 36
Score = 25.6 bits (55), Expect = 0.76
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 14 CQVCGKAFSQSSNLITHSRKH 34
C +CGK F+ ++ L H +H
Sbjct: 16 CGLCGKVFTDANRLRQHEAQH 36
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.7 bits (58), Expect = 0.23
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTE 65
KP+ACD+CG+ ++ + L H H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLA 33
Score = 23.6 bits (50), Expect = 3.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 9 EKPHKCQVCGKAFSQSSNLITH 30
+KP+ C +CGK + L H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.9 bits (59), Expect = 0.26
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
+ CQ C S L H + G + C CGR K DL+ H E
Sbjct: 15 LRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNVLVK-DLKTHPEV 64
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.8 bits (58), Expect = 0.37
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 14 CQVCGKAFSQS-SNLITHSRK-HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
C C ++ L H C C + F+ K L H +H+
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 0.40
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHT 35
K H C +CGK F L +H HT
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHT 33
Score = 25.6 bits (55), Expect = 0.51
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 42 CDLCGRAFQRKVDLRRHK 59
CD+CG+ F+ K L+ HK
Sbjct: 12 CDMCGKKFKSKGTLKSHK 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 0.78
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHT 35
KP KC +C A SNL H +H+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHS 33
Score = 23.7 bits (50), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTE 65
KPF C LC A + K +L+ H TE
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.0 bits (58), Expect = 0.82
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 17/61 (27%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKPFACDLCG-RAFQRKVD----LRRHKETQHTEMRP 68
V GK + H + P + R QR D ++ ET + +
Sbjct: 132 DPVTGKIY------------HLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIES 179
Query: 69 V 69
+
Sbjct: 180 L 180
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.8 bits (54), Expect = 0.97
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 38 KPFAC--DLCGRAFQRKVDLRRHKETQHTEMR 67
K F C C + F+R+ ++R H +T H E R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR 47
Score = 24.4 bits (53), Expect = 1.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
+K +C C K F + N+ +H + H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 26.0 bits (56), Expect = 1.1
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 9 EKPHKCQVCGKAFSQSSNLITH--SRKH 34
K C C + F SS +H + H
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHLVGKIH 317
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 24.5 bits (52), Expect = 1.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQH 63
+P C +C ++ +LRRH E +H
Sbjct: 23 QPATCPICYAVIRQSRNLRRHLELRH 48
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.1 bits (52), Expect = 1.7
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFKP 39
C C K F +S +L H H
Sbjct: 5 CPECPKRFMRSDHLSKHITLHELLGE 30
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 23.7 bits (51), Expect = 1.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFK 38
C C K F +S +L H H K
Sbjct: 5 CPECPKRFMRSDHLTLHILLHENKK 29
>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein,
structural genomics, PSI-2, protein structure
initiative; NMR {Thermotoga maritima MSB8} SCOP:
d.325.1.1
Length = 77
Score = 24.6 bits (54), Expect = 2.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTG--FKP 39
+C+VCGKA +S N ++HS K + F+P
Sbjct: 9 RCEVCGKA-PRSGNTVSHSDKKSERWFRP 36
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 24.8 bits (53), Expect = 2.1
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEMRPVP 70
C C ++ + ++ + F C CG+ + ++ H H + P
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
Score = 23.3 bits (49), Expect = 7.2
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 7 HGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
++ C CGK + + H + P
Sbjct: 58 CKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS 94
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 25.0 bits (54), Expect = 2.2
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
C C + F + ++ H K + +CD C + + D H +
Sbjct: 109 ALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQN 158
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 24.9 bits (54), Expect = 2.9
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 1 MISNIWHGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKE 60
M++++WH P Q G SS AC L G A + + R
Sbjct: 89 MVADLWHAPAPKNGQAVGTNTIGSSE--------------ACMLGGMAMKWRWRKRMEAA 134
Query: 61 TQHTEMRPV 69
+ T+ +
Sbjct: 135 GKPTDKPNL 143
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 22.9 bits (48), Expect = 4.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTGFK 38
C+ C K F +L H R HT K
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 23.8 bits (52), Expect = 5.5
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 7 HGE-KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCG 46
HG C C K + ++ + P C CG
Sbjct: 149 HGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CG 188
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 23.9 bits (51), Expect = 6.3
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 3 SNIWHGEKPHKCQVCG 18
I GE KC +C
Sbjct: 178 GYIHKGEDFEKCPICF 193
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 23.1 bits (49), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 12 HKCQVCGKAFSQSSNLITHSR 32
H+C C + F S+NL TH R
Sbjct: 51 HRCLACARYFIDSTNLKTHFR 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.134 0.445
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,032,870
Number of extensions: 43047
Number of successful extensions: 808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 431
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)