RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2647
(72 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 53.5 bits (129), Expect = 2e-12
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRK-HTGFKPFACDL 44
KP+ CQ CGK FS+ +L H ++ HT +P C +
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 35.4 bits (82), Expect = 2e-05
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
KP+ C CG+ F R L H + HT RP
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERP 34
Score = 21.1 bits (45), Expect = 8.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 8 GEKPHKCQV 16
E+PHKCQV
Sbjct: 31 SERPHKCQV 39
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 49.9 bits (120), Expect = 3e-11
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP+ C CGKAFS+SS L+ H R HTG
Sbjct: 4 GEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 37.2 bits (87), Expect = 4e-06
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
H+G KP+ C CG+AF R L +H+ HT
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRV-HT 31
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 48.8 bits (117), Expect = 9e-11
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
+KP +C++C + FS+S +L TH R HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 30.7 bits (70), Expect = 0.001
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHT 64
KPF C +C R F R L H T HT
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HT 27
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 49.3 bits (117), Expect = 1e-10
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKET 61
+K + CQ CGK+F+ S H H G +P+ C +CG+ F+ K L H +
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 31.2 bits (70), Expect = 0.002
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 7 HGEKPHKCQVCGKAFSQSSNLITHSRKH 34
G +P+ C VCGK F +L+ H + H
Sbjct: 26 LGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 23.5 bits (50), Expect = 1.3
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEM 66
K + C CG++F K RH
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLR 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 46.1 bits (110), Expect = 1e-09
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
+ C+VC +AF++ +L H R HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.1 bits (71), Expect = 0.001
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHT 64
+ F C++C RAF R+ L+RH + HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HT 26
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.1 bits (107), Expect = 3e-09
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFKPFACD 43
CGK+F+ +L H + H+ + + C+
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 25.1 bits (55), Expect = 0.27
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 42 CDLCGRAFQRKVDLRRHKETQHTEMRP 68
CG++F K L+ H + H++ R
Sbjct: 6 EPACGKSFNFKKHLKEHMKL-HSDTRD 31
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.0 bits (107), Expect = 3e-09
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP++C +C F+QS + H +
Sbjct: 5 GEKPYECYICHARFTQSGTMKMHILQKHT 33
Score = 43.4 bits (103), Expect = 2e-08
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
R H+G KP+ C +C F + ++ H +HTE
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.0 bits (107), Expect = 4e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
GEKP+ C C K F Q L H +++
Sbjct: 5 GEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 38.9 bits (91), Expect = 9e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 32 RKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
R HTG KP+AC C + F++K L H + H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 44.1 bits (105), Expect = 6e-09
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHT 35
KP+KC CGKAFSQ+S LI H R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 28.7 bits (65), Expect = 0.008
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHT 64
KP+ C CG+AF + L H+ HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRI-HT 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 43.1 bits (102), Expect = 2e-08
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFK 38
K C C K F +S +L H + H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 28.8 bits (65), Expect = 0.006
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHT 64
K FAC C + F R L +H +T H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT-HQ 26
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 42.7 bits (101), Expect = 2e-08
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 10 KPHKC--QVCGKAFSQSSNLITHSRKHTG 36
KPHKC + C K++S+ NL TH R HTG
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 26.9 bits (60), Expect = 0.044
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 38 KPFACD--LCGRAFQRKVDLRRHKETQHT 64
KP C C +++ R +L+ H + HT
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRS-HT 28
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 42.3 bits (100), Expect = 4e-08
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHTG 36
++P+ C C KAF ++ +LI H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 27.3 bits (61), Expect = 0.031
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 38 KPFACD--LCGRAFQRKVDLRRHKETQHTE 65
+P++CD C +AF R DL RHK++ H E
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS-HQE 30
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 41.9 bits (99), Expect = 5e-08
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 10 KPHKC--QVCGKAFSQSSNLITHSRKHTG 36
+P+ C + C + FS+S++L H R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 26.1 bits (58), Expect = 0.079
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 38 KPFACD--LCGRAFQRKVDLRRHKETQHT 64
+P+AC C R F R DL RH HT
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRI-HT 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 41.7 bits (98), Expect = 7e-08
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
G++P C++C AF+ +N H + HT
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 35.1 bits (81), Expect = 2e-05
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 34 HTGFKPFACDLCGRAFQRKVDLRRHKETQHTE 65
+G +PF C +C AF K + RH + HT+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTD 32
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 41.2 bits (97), Expect = 1e-07
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHTGFK 38
+P C CGK F++S L H R HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.3 bits (61), Expect = 0.032
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 38 KPFACDL--CGRAFQRKVDLRRHKETQHT 64
+PF C CG+ F R +L+RHK T HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT-HT 28
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 41.2 bits (97), Expect = 1e-07
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHTG 36
KP +C CGK FS NL TH R HTG
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
Score = 25.8 bits (57), Expect = 0.12
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 38 KPFACD--LCGRAFQRKVDLRRHKETQHT 64
KPF C CG+ F +LR H HT
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRI-HT 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 40.1 bits (94), Expect = 3e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
G KP +C C ++FS+S +L H ++H
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 37.8 bits (88), Expect = 2e-06
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTEM 66
+R TG KPF C C R+F R L H++ H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR-HMLV 37
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 39.8 bits (93), Expect = 5e-07
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 36
+ +KC CGK+FS SS+L H R HTG
Sbjct: 9 ERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 34.8 bits (80), Expect = 4e-05
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 30 HSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHT 64
+ + + CD CG++F DL +H+ T HT
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HT 36
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 36.6 bits (85), Expect = 7e-06
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHT 35
+P+ C C K F+QS+NL +H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 25.0 bits (55), Expect = 0.21
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 38 KPFACDL--CGRAFQRKVDLRRHKETQHT 64
+P+ C C + F + +L+ H T H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT-HA 28
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 34.3 bits (78), Expect = 6e-05
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 11 PHKCQVCGKAFSQSSNLITHSRKHTG 36
PHKC+VCGK FS+ L TH R HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 21.9 bits (46), Expect = 3.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 39 PFACDLCGRAFQRKVDLRRH 58
P C++CG+ F RK L+ H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTH 20
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 32.3 bits (73), Expect = 3e-04
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
E+P KCQ+C A SS L H R HTG
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTG 28
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 31.1 bits (70), Expect = 0.001
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 7 HGEKPHKCQVC--GKAFSQSSNLITHSRKHTGFK 38
+K +C K F + N+ +H + H +
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.8 bits (59), Expect = 0.070
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 27 LITHSRKHTGFKPFACDLC--GRAFQRKVDLRRHKETQHTEMR 67
I K K F C + F+R+ ++R H +T H E R
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR 47
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 30.8 bits (69), Expect = 0.002
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTGFKPFA 41
K C++CGK F +L H H+G KP++
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
Score = 25.0 bits (54), Expect = 0.21
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQHTEMRP 68
K AC++CG+ F+ L RHK H+ +P
Sbjct: 4 KQVACEICGKIFRDVYHLNRHK-LSHSGEKP 33
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.6 bits (69), Expect = 0.002
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKET 61
KPFACD+CGR F R + +RH +
Sbjct: 2 KPFACDICGRKFARSDERKRHTKI 25
Score = 26.3 bits (58), Expect = 0.067
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKH 34
EKP C +CG+ F++S H++ H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.0 bits (62), Expect = 0.015
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 12 HKCQVCGKAFSQSSNLITHSRKHTG 36
H C CGKAF +SS L H HTG
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVHTG 27
Score = 21.1 bits (44), Expect = 7.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 42 CDLCGRAFQRKVDLRRH 58
C CG+AF L+RH
Sbjct: 5 CAECGKAFVESSKLKRH 21
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 28.4 bits (63), Expect = 0.019
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQH 63
C LCG+ F LR+H E QH
Sbjct: 7 LPCGLCGKVFTDANRLRQH-EAQH 29
Score = 25.3 bits (55), Expect = 0.25
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 14 CQVCGKAFSQSSNLITHSRKH 34
C +CGK F+ ++ L H +H
Sbjct: 9 CGLCGKVFTDANRLRQHEAQH 29
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 27.5 bits (61), Expect = 0.029
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQH 63
P+ C LC RAF R+ L RH + H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIH 25
Score = 22.5 bits (48), Expect = 2.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 11 PHKCQVCGKAFSQSSNLITHSRK-HTG 36
P+ C +C +AF++ LI H++K H+G
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHSG 27
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.3 bits (57), Expect = 0.075
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHT 35
KP+KC+ C A + SS+L H R H+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.4 bits (55), Expect = 0.15
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 9 EKPHKCQVCGKAFSQSSNLITHSRKHTG 36
EKP+ C VCG F + + H R H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
Score = 21.9 bits (46), Expect = 3.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 38 KPFACDLCGRAFQRKVDLRRH 58
KP++C +CG F+RK + H
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYH 22
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 25.9 bits (56), Expect = 0.16
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 35 TGFKPFACDLCGRAFQRKVDLRRHKET 61
TG KP+ C++C + F + RH +
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHVTS 27
Score = 21.6 bits (45), Expect = 6.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITH 30
G KP++C +C K F + H
Sbjct: 2 GIKPYECNICAKRFMWRDSFHRH 24
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.4 bits (56), Expect = 0.30
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 8 GEKPHKCQVCGKAFSQSSNLITH--SRKH 34
G H+C C + F S+NL TH S+ H
Sbjct: 12 GGGLHRCLACARYFIDSTNLKTHFRSKDH 40
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 24.7 bits (54), Expect = 0.34
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKH 34
+ + C C + F + L H H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.9 bits (51), Expect = 0.82
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 40 FACDLCGRAFQRKVDLRRHKET 61
F C CG+ F R+ + RH +
Sbjct: 5 FVCSKCGKTFTRRNTMARHADN 26
Score = 20.8 bits (43), Expect = 9.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTG 36
C CGK F++ + + H+ G
Sbjct: 7 CSKCGKTFTRRNTMARHADNCAG 29
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.7 bits (51), Expect = 0.82
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 10 KPHKCQV--CGKAFSQSSNLITHSRK 33
KP+ C+ C KAFS +S+ H +
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNR 26
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 23.9 bits (51), Expect = 0.83
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 38 KPFACDLCGRAFQRKVDLRRHKETQH 63
+P C +C ++ +LRRH E +H
Sbjct: 23 QPATCPICYAVIRQSRNLRRHLELRH 48
Score = 22.0 bits (46), Expect = 5.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 9 EKPHKCQVCGKAFSQSSNLITH 30
E+P C +C QS NL H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRH 43
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 23.1 bits (49), Expect = 1.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHTGFK 38
+C C K F L H+RKHTG K
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.8 bits (54), Expect = 1.0
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQHTEMRPVPVT 72
+ C+ C + + + R H + R P
Sbjct: 32 WLCEYCLKYMKYEKSYRFHL--GQCQWRQPPGK 62
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.2 bits (49), Expect = 1.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 40 FACDLCGRAFQRKVDLRRH 58
F C +C F+R+++LR H
Sbjct: 5 FTCSVCQETFRRRMELRLH 23
>d2jz6a1 d.325.1.1 (A:6-75) Ribosomal protein L28 (L28p)
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 23.8 bits (52), Expect = 1.1
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHT 35
+C+VCGKA +S N ++HS K +
Sbjct: 4 RCEVCGKA-PRSGNTVSHSDKKS 25
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.7 bits (48), Expect = 1.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 10 KPHKCQVCGKAFSQSSNLITHSRKHTG 36
+P KC C Q SNL H +K G
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHG 27
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.4 bits (47), Expect = 2.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 10 KPHKCQVCGKAFSQSSNLITH 30
K ++CQ C + SSNL TH
Sbjct: 1 KTYQCQYCEFRSADSSNLKTH 21
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 22.5 bits (48), Expect = 2.2
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 10 KPHKCQV--CGKAFSQSSNLITHSRKHTG 36
KP+ C++ C K ++ S+L H + G
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
Score = 20.6 bits (43), Expect = 10.0
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 38 KPFACDL--CGRAFQRKVDLRRHKETQH 63
KP+ C L C + + LR+H +T H
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 28
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 22.4 bits (48), Expect = 2.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTG 36
C + F L+ H R+HTG
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHTG 32
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 21.9 bits (46), Expect = 2.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 11 PHKCQVCGKAFSQSSNLITHSRKH 34
P +C CGK + + NL+ H ++
Sbjct: 1 PFECPKCGKCYFRKENLLEHEARN 24
Score = 21.5 bits (45), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 39 PFACDLCGRAFQRKVDLRRHK 59
PF C CG+ + RK +L H+
Sbjct: 1 PFECPKCGKCYFRKENLLEHE 21
>d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p)
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 23.1 bits (50), Expect = 2.9
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 13 KCQVCGKAFSQSSNLITHSRKHT 35
CQV GK + N +H+ T
Sbjct: 3 VCQVTGKR-PVTGNNRSHALNAT 24
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 21.9 bits (47), Expect = 3.4
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 4 NIWHGEKPHKCQVCG 18
I GE KC +C
Sbjct: 13 YIHKGEDFEKCPICF 27
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.9 bits (46), Expect = 3.8
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQHT 64
F C C RK DL H QH+
Sbjct: 3 FHCPHCDTVIARKSDLGVHLRKQHS 27
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 21.4 bits (45), Expect = 5.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 9 EKPHKCQV--CGKAFSQSSNLITHSRKHT 35
+KP C CG+ F+ +L H KH
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 21.2 bits (44), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 12 HKCQVCGKAFSQSSNLITHSRKH 34
+KC +C ++F + S L H R H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
Score = 20.8 bits (43), Expect = 9.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 40 FACDLCGRAFQRKVDLRRHKETQ 62
+ C LC R+F K L RH+
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 21.2 bits (45), Expect = 6.3
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 4 NIWHGEKPHKCQVCG 18
E P C VCG
Sbjct: 13 YTAVDEAPEYCPVCG 27
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 21.0 bits (44), Expect = 7.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 14 CQVCGKAFSQSSNLITHSRKHTG 36
C+ CG + S L H R HT
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTD 26
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 26
Score = 20.9 bits (43), Expect = 9.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 39 PFACDLCGRAFQRKVDLRRHKETQH 63
P+ C C + F +K DL+ H H
Sbjct: 2 PYKCSSCSQQFMQKKDLQSHMIKLH 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.134 0.445
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,749
Number of extensions: 9350
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 130
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.9 bits)