BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2649
(1637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 463 bits (1192), Expect = e-130, Method: Compositional matrix adjust.
Identities = 428/1745 (24%), Positives = 727/1745 (41%), Gaps = 319/1745 (18%)
Query: 54 LVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG 113
LVLF + + HI RI+R+ P+G+ALL+GV G GK LSR A+++ L + I++ NY
Sbjct: 1625 LVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK 1684
Query: 114 IPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIEN 173
D DL L +AG K I F+ +S V + FL +N +LA GEVP LF +E
Sbjct: 1685 SSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTA 1744
Query: 174 IVN---NIAAEPEIPLTADLDPLTMLTD----DATIAFWNNEGLPN--DRMSTE----NA 220
+++ A + L ++ + T + + F N P+ +R +T N
Sbjct: 1745 LMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNR 1804
Query: 221 TILVNSQRW--------------------------PLMIDPQEVL-----------RKPC 243
+L W P+ I E++ R
Sbjct: 1805 CVLDWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAV 1864
Query: 244 AVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQN 303
+ Y+H ++ + ++ L + R NY TP+ +L+ I+ L+ K D +
Sbjct: 1865 VSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNI 1924
Query: 304 GLQKL-----------VSLGNEEKKVRAIEEDVSYK------------------------ 328
GL+KL VSL + +++ E + K
Sbjct: 1925 GLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQ 1984
Query: 329 ----------QKVCA-EDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDA 377
QKV A DLEKAEPA++ AQEA+ T+ K +L E+K+L PP V +A
Sbjct: 1985 LDVRNKEIAVQKVKAYADLEKAEPAIIEAQEAVSTIKKKHLDEIKSLPKPPTPVKLAMEA 2044
Query: 378 VAVLMA--------------------------SKKGKVPK-----------DLGWKGSQL 400
V +++ +KK PK D G+ +
Sbjct: 2045 VCLMLGGKKLEWADIRKKIMEPNFITSIINYDTKKMMTPKIREAITKGYLEDPGFDYETV 2104
Query: 401 KALKAPPQGLCAWVINIITFYNVWTFVEPKRXXXXXXXXXXXXXXXXXXXXXXXIASLEA 460
L W + + ++P R I +LE
Sbjct: 2105 NRASKACGPLVKWATAQTYYSEILDRIKPLREEVEQLENAANELKLKQDEIVATITALEK 2164
Query: 461 TLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALT 520
++ +++ ++E + ++ + K+D + L++ L SE RW+ T
Sbjct: 2165 SIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2224
Query: 521 LPGDILLVTAFVSYVGCFTRSYRLDLLNKFWLPTIKKSKIDW--------FHEWPQEAL- 571
+ GD++L +AF++Y+G F +++R DL+ K W+ + I + F P+E L
Sbjct: 2225 VVGDVVLASAFLAYIGFFDQNFRTDLMRK-WMIRLDSVGIKFKSDLSVPSFLSKPEERLN 2283
Query: 572 --------ESVSLKFLVKSCESHRY-------------------GNKLTVIRLGQKRVMD 604
+ + ++ + +RY K+T M
Sbjct: 2284 WHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMK 2343
Query: 605 QIEKAVMSGFVLLIENIGESVDPVLDNLIGRNLIRKGK--VVKIGEKEIDYNPNFKLILH 662
+E A+ G LL++++ E++DPVL+ ++ + + +KG ++++G++++D++P+F + L
Sbjct: 2344 NLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLF 2402
Query: 663 TKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKFERPDLELLKANLTKEQNLFKI 722
T+ H+ P++ ++ T +NFTVT L+ Q L E +K ERPD +++L K Q F++
Sbjct: 2403 TRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQV 2462
Query: 723 TLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAXXXXXXXXXXXXTAKKIDEAREQ 782
L+ LE LL LS + G++L D +++ LE KK ++I E
Sbjct: 2463 KLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEVSAL 2522
Query: 783 YRPAAERASVIYFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKSDNLKG---RVANLV 839
Y P A S +YF M EL + + +YQFSL+AF +F+N + + K R+ L
Sbjct: 2523 YNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLS 2581
Query: 840 ESITFMTFQYTSRGLFERDKLIFMAQMTIQVKSLCMGDQHYHVLQQPKRXXXXXXXXXXX 899
+ I MTF +R L DKL F Q+TI
Sbjct: 2582 KDIFSMTFNRVTRTLLNDDKLTFALQLTI------------------------------- 2610
Query: 900 XXXXXXXXXXXXIAISMMKKEIAREELDFLLR-----FPFQPGVSSPVDFLTNTLWGGVR 954
I++ EI E DFLL+ + + L+ T +
Sbjct: 2611 ------------ISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLI 2658
Query: 955 AL-SNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQEW-------KNK-----SALQ 1001
L + F L I+ + WK++ + + +P+ W N+ S +
Sbjct: 2659 CLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFR 2718
Query: 1002 RLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIEFEQSY-RESSSTTPIFFILSPGVD 1060
++ +M+ DR+ SFV G+ ++N + ++ +E S++P+ PG D
Sbjct: 2719 KILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYD 2778
Query: 1061 PTRDVEAVGRKMGFTTDLRNLHNVSLG--QGQEVIAEETIQIASTKGHWAILQNVHLVKN 1118
+ V+ + ++ + + ++G +G E +AE++I A+ G W +L+N+HL
Sbjct: 2779 ASSKVDDLALQLH-----KQYKSFAIGSPEGFE-LAEKSIYAAAKSGTWVLLKNIHLAPQ 2832
Query: 1119 WLPTLDKKMEASFEKPHKNYRLFISAE--PASDPEYHIIPQGVLDSSIKITNEPPTGMQA 1176
WL L+KK+ + PH ++RLF+++E PA +P +L S + E P G++A
Sbjct: 2833 WLVQLEKKLHSL--SPHPSFRLFMTSEIHPA-------LPANLLRMSNVFSYENPPGVKA 2883
Query: 1177 NLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDL- 1235
NL M + AE I F L +FHA++ ER ++ P GW + + FN DL
Sbjct: 2884 NLLHTFIGIPAT--RMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLR 2941
Query: 1236 ----TISSLV-LYNYLEAN---NNVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYM 1287
+I V LY+ +N + +PW +R + G +YGG I +++D RL ++LE+
Sbjct: 2942 GALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLF 3001
Query: 1288 NPELLEGETKLAP--GFPAPPNQDYQGYHTYIDESLPP-ESPILYGLHPNAEIGFLTTQA 1344
P + L P G P + +I E+LP +PI GL NAE L+ +A
Sbjct: 3002 TPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWI-EALPEISTPIWLGLPENAESLLLSNKA 3060
Query: 1345 ENVFKIIFELQPRDTAAAQGSG-----------------VTREEKVRQVLDEILDKCPDA 1387
K+I +LQ ++ G + K+R + E P
Sbjct: 3061 R---KMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKP 3117
Query: 1388 F--------NIKDMMGRVEDRTPYIIVAFQECERMNILMSEIKRSXXXXXXXXXXXXTIT 1439
NIKD + R +R E L+ +I T
Sbjct: 3118 LKQLKRTTQNIKDPLFRCFER---------EISTGGKLVKKITNDLANLLELISGNIKST 3168
Query: 1440 TDMEALEYSIFMDTVPPSWEKRAYPSMLGLGGWFADLMLRLKELENWVGDFQLPS-SVWL 1498
+ +L SI VP W+ + P + L W +D R+++L S VWL
Sbjct: 3169 NYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVWL 3228
Query: 1499 AGFFNPQSFLTAIMQSTARKNEWPLDKMCLQCDVTKKQREDFTQAPRDGAYVN--GLYME 1556
G NP++++TA QS ++ N W L+ + L K + GA N G+ +E
Sbjct: 3229 GGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGK------ISSEGGASFNVKGMALE 3282
Query: 1557 GARWD 1561
GA W+
Sbjct: 3283 GAVWN 3287
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 411/1673 (24%), Positives = 697/1673 (41%), Gaps = 297/1673 (17%)
Query: 54 LVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG 113
LVLF + + HI RI+R+ P+G+ALL+GV G GK LSR A+++ L + I++ NY
Sbjct: 1625 LVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK 1684
Query: 114 IPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIEN 173
D DL L +AG K I F+ +S V + FL +N +LA GEVP LF +E
Sbjct: 1685 SSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTA 1744
Query: 174 IVN---NIAAEPEIPLTADLDPLTMLTD----DATIAFWNNEGLPN--DRMSTE----NA 220
+++ A + L ++ + T + + F N P+ +R +T N
Sbjct: 1745 LMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNR 1804
Query: 221 TILVNSQRW--------------------------PLMIDPQEVL-----------RKPC 243
+L W P+ I E++ R
Sbjct: 1805 CVLDWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAV 1864
Query: 244 AVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQN 303
+ Y+H ++ + ++ L + R NY TP+ +L+ I+ L+ K D +
Sbjct: 1865 VSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNI 1924
Query: 304 GLQKL-----------VSLGNEEKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQEALDT 352
GL+KL VSL + +++ E + K K +D + AE A+E
Sbjct: 1925 GLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQ 1984
Query: 353 LDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCA 412
LD N +A +K K DL KA P G
Sbjct: 1985 LDVRNKE----------------------IAVQKVKAYADLE---------KAEPTG--- 2010
Query: 413 WVINIITFYNVWTFVEPKRXXXXXXXXXXXXXXXXXXXXXXXIASLEATLQELTDKFDAA 472
P R I +LE ++ +++
Sbjct: 2011 ----------------PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054
Query: 473 VKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFV 532
++E + ++ + K+D + L++ L SE RW+ T+ GD++L +AF+
Sbjct: 2055 IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFL 2114
Query: 533 SYVGCFTRSYRLDLLNKFWLPTIKKSKIDW--------FHEWPQEAL---------ESVS 575
+Y+G F +++R DL+ K W+ + I + F P+E L + +
Sbjct: 2115 AYIGFFDQNFRTDLMRK-WMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELC 2173
Query: 576 LKFLVKSCESHRY-------------------GNKLTVIRLGQKRVMDQIEKAVMSGFVL 616
++ + +RY K+T M +E A+ G L
Sbjct: 2174 IENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPL 2233
Query: 617 LIENIGESVDPVLDNLIGRNLIRKGK--VVKIGEKEIDYNPNFKLILHTKLANPHYKPEM 674
L++++ E++DPVL+ ++ + + +KG ++++G++++D++P+F + L T+ H+ P++
Sbjct: 2234 LVQDV-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDL 2292
Query: 675 QAQTTLINFTVTRDGLEDQLLAEVVKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMR 734
++ T +NFTVT L+ Q L E +K ERPD +++L K Q F++ L+ LE LL
Sbjct: 2293 CSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNA 2352
Query: 735 LSSSGGDVLSDKNLVLNLEKSKKTAXXXXXXXXXXXXTAKKIDEAREQYRPAAERASVIY 794
LS + G++L D +++ LE KK ++I E Y P A S +Y
Sbjct: 2353 LSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVY 2412
Query: 795 FIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKSDNLKG---RVANLVESITFMTFQYTS 851
F M EL + + +YQFSL+AF +F+N + + K R+ L + I MTF +
Sbjct: 2413 FAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVT 2471
Query: 852 RGLFERDKLIFMAQMTIQVKSLCMGDQHYHVLQQPKRXXXXXXXXXXXXXXXXXXXXXXX 911
R L DKL F Q+TI
Sbjct: 2472 RTLLNDDKLTFALQLTI------------------------------------------- 2488
Query: 912 IAISMMKKEIAREELDFLLR-----FPFQPGVSSPVDFLTNTLWGGVRAL-SNLEEFKNL 965
I++ EI E DFLL+ + + L+ T + L + F L
Sbjct: 2489 ISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKL 2548
Query: 966 DKDIEAAAKRWKKYIEGETPEKDKLPQEW-------KNK-----SALQRLCIMRCLRPDR 1013
I+ + WK++ + + +P+ W N+ S +++ +M+ DR
Sbjct: 2549 VDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDR 2608
Query: 1014 MTYAVRSFVEEKMGDRYVNARAIEFEQSY-RESSSTTPIFFILSPGVDPTRDVEAVGRKM 1072
+ SFV G+ ++N + ++ +E S++P+ PG D + V+ + ++
Sbjct: 2609 VLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQL 2668
Query: 1073 GFTTDLRNLHNVSLG--QGQEVIAEETIQIASTKGHWAILQNVHLVKNWLPTLDKKMEAS 1130
+ + ++G +G E +AE++I A+ G W +L+N+HL WL L+KK+ +
Sbjct: 2669 H-----KQYKSFAIGSPEGFE-LAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL 2722
Query: 1131 FEKPHKNYRLFISAE--PASDPEYHIIPQGVLDSSIKITNEPPTGMQANLHKALDNFTQE 1188
PH ++RLF+++E PA +P +L S + E P G++ANL
Sbjct: 2723 --SPHPSFRLFMTSEIHPA-------LPANLLRMSNVFSYENPPGVKANLLHTFIGIPAT 2773
Query: 1189 DLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDL-----TISSLV-L 1242
M + AE I F L +FHA++ ER ++ P GW + + FN DL +I V L
Sbjct: 2774 --RMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDL 2831
Query: 1243 YNYLEAN---NNVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLA 1299
Y+ +N + +PW +R + G +YGG I +++D RL ++LE+ P + L
Sbjct: 2832 YSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLV 2891
Query: 1300 P--GFPAPPNQDYQGYHTYIDESLPP-ESPILYGLHPNAEIGFLTTQAENVFKIIFELQP 1356
P G P + +I E+LP +PI GL NAE L+ +A K+I +LQ
Sbjct: 2892 PSIGLSVPEGTTRAHFMKWI-EALPEISTPIWLGLPENAESLLLSNKAR---KMINDLQK 2947
Query: 1357 RDTAAAQGSG-----------------VTREEKVRQVLDEILDKCPDAF--------NIK 1391
++ G + K+R + E P NIK
Sbjct: 2948 MQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQLKRTTQNIK 3007
Query: 1392 DMMGRVEDRTPYIIVAFQECERMNILMSEIKRSXXXXXXXXXXXXTITTDMEALEYSIFM 1451
D + R +R E L+ +I T + +L SI
Sbjct: 3008 DPLFRCFER---------EISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISK 3058
Query: 1452 DTVPPSWEKRAYPSMLGLGGWFADLMLRLKELENWVGDFQLPS-SVWLAGFFNPQSFLTA 1510
VP W+ + P + L W +D R+++L S VWL G NP++++TA
Sbjct: 3059 GIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVWLGGLLNPEAYITA 3118
Query: 1511 IMQSTARKNEWPLDKMCLQCDVTKKQREDFTQAPRDGAYVN--GLYMEGARWD 1561
QS ++ N W L+ + L K + GA N G+ +EGA W+
Sbjct: 3119 TRQSASQLNGWSLENLRLHASSLGK------ISSEGGASFNVKGMALEGAVWN 3165
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/418 (22%), Positives = 182/418 (43%), Gaps = 46/418 (11%)
Query: 455 IASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI--------DLADRLVNGLASENVR 506
I L A ++ +T K+ + + F E+ E + L+ LV L E R
Sbjct: 1849 IDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKER 1908
Query: 507 WKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLD-------LLNKF--------- 550
W ++ +++ L G+ ++ + + +Y G R D LL KF
Sbjct: 1909 WLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVKYDVNYR 1968
Query: 551 ---WLPTIKK---------SKIDWFHEWPQEALESV-SLKFLVK------SCESHRYGNK 591
+L T+ + K D+F E + S ++ FL+ + S+ YGNK
Sbjct: 1969 FIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYYGNK 2028
Query: 592 LTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVLDNLIGRNLIRKGK--VVKIGEK 649
++ ++ + ++E A+ G V++I++ GE DP++ LI R G V+IG+
Sbjct: 2029 TVLLSFLEEGFVKRLENAIRFGSVVIIQD-GEFFDPIISRLISREFNHAGNRVTVEIGDH 2087
Query: 650 EIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKFERPDLELL 709
E+D + +FKL +H+ + ++++ L++F ++ +E ++ + E +++
Sbjct: 2088 EVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRK 2147
Query: 710 KANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAXXXXXXXXXX 769
+ +L K +K+ LK LE LL L++S G++L + L++ L KK A
Sbjct: 2148 REDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSES 2207
Query: 770 XXTAKKIDEAREQYRPAAERASVIYFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKK 827
+ D E+Y + + I+ ++ + + + Y S+ F F K +
Sbjct: 2208 EEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFKRVFIKKSR 2265
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 1094 AEETIQIASTKGHWAILQNVHLVKNWLPT-LDKKMEAS-FEKPHKNYRLFISAEPASDPE 1151
A+E I + +G W +LQN+ + +W+ T L K +E + + H+ +++F++ D
Sbjct: 2428 AQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDK- 2486
Query: 1152 YHIIPQGVLDSSIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHA 1211
+P +L + + E G+ L D + + F L +FHA
Sbjct: 2487 ---LPAPLLQRTDRFVYEDIPGI---LDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHA 2540
Query: 1212 VVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEAN--NNVPWEDLRYLFGEIMYGGH 1269
++ R + P G+++ Y FN D +S+ L N L N NN+PW +R I+YGG
Sbjct: 2541 LITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGK 2600
Query: 1270 ITDDWD 1275
I ++ D
Sbjct: 2601 IDEEKD 2606
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 72/125 (57%)
Query: 54 LVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG 113
+V+ E + HI RI+R ++ +G+ +L+G +GK L+R A+++ L+ Q ++ ++
Sbjct: 1588 MVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN 1647
Query: 114 IPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIEN 173
+ D + L LK + ++ +S + + FL +N +LA+ ++PDLF +E +
Sbjct: 1648 LSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDK 1707
Query: 174 IVNNI 178
++NN+
Sbjct: 1708 LLNNL 1712
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 164/369 (44%), Gaps = 38/369 (10%)
Query: 496 LVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLD-------LLN 548
LV L E RW ++ +++ L G+ ++ + + +Y G R D LL
Sbjct: 1689 LVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERGDMLVILKRLLG 1748
Query: 549 KF------------WLPTIKK---------SKIDWFHEWPQEALESV-SLKFLVK----- 581
KF +L T+ + K D+F E + S ++ FL+
Sbjct: 1749 KFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHM 1808
Query: 582 -SCESHRYGNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVLDNLIGRNLIRK 640
+ S+ YGNK ++ ++ + ++E AV G V++I++ GE DP++ LI R
Sbjct: 1809 ITVISNYYGNKTVLLSFLEEGFVKRLENAVRFGSVVIIQD-GEFFDPIISRLISREFNHA 1867
Query: 641 GK--VVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEV 698
G V+IG+ E+D + +FKL +H+ + ++++ L++F ++ +E ++
Sbjct: 1868 GNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDIT 1927
Query: 699 VKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKT 758
+ E +++ + +L K +++ LK LE LL L++S G++L + L++ L KK
Sbjct: 1928 LTEENAEMQRKREDLIKLNTEYRLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKE 1987
Query: 759 AXXXXXXXXXXXXTAKKIDEAREQYRPAAERASVIYFIMNELFKINPIYQFSLKAFTVVF 818
A + D E+Y + + I+ ++ + + + Y S+ F F
Sbjct: 1988 AMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCF 2047
Query: 819 HNAMTKAKK 827
K +
Sbjct: 2048 KRVFIKKSR 2056
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 11/186 (5%)
Query: 1094 AEETIQIASTKGHWAILQNVHLVKNWLPT-LDKKMEAS-FEKPHKNYRLFISAEPASDPE 1151
A+E I + +G W +LQN+ + +W+ T L K +E + + H+ +++F++ D
Sbjct: 2219 AQEEISKSKIEGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDK- 2277
Query: 1152 YHIIPQGVLDSSIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHA 1211
+P +L + ++ E G+ L D + + F L +FHA
Sbjct: 2278 ---LPAPLLQRTDRVVYEDIPGI---LDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHA 2331
Query: 1212 VVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEAN--NNVPWEDLRYLFGEIMYGGH 1269
++ R + P G+++ Y FN D +S+ L N L N NN+PW +R I+YGG
Sbjct: 2332 LITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGK 2391
Query: 1270 ITDDWD 1275
I ++ D
Sbjct: 2392 IDEEKD 2397
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 72/125 (57%)
Query: 54 LVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG 113
+V+ E + HI RI+R ++ +G+ +L+G +GK L+R A+++ L+ Q ++ ++
Sbjct: 1369 MVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN 1428
Query: 114 IPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIEN 173
+ D + L LK + ++ +S + + FL +N +LA+ ++PDLF +E +
Sbjct: 1429 LSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDK 1488
Query: 174 IVNNI 178
++NN+
Sbjct: 1489 LLNNL 1493
>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C
Length = 155
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 50/146 (34%)
Query: 335 DLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLG 394
DL +A P L AA +ALDTL ++TE+K +K+PP GV V +A+ ++ K +V KD
Sbjct: 5 DLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARV-KDTA 63
Query: 395 --------WKGSQ--------LKALKA------PPQ------------------------ 408
W+ S+ L +L+ PP+
Sbjct: 64 SGRMVDDYWEASKKMLMEFDFLDSLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSV 123
Query: 409 ---GLCAWVINIITFYNVWTFVEPKR 431
GLC+WVI + + V VEPKR
Sbjct: 124 ACAGLCSWVIALEKYDKVIKEVEPKR 149
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 322 EEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVL 381
+E ++ KQ EDL+K EPA++ AQ A+ ++ K +L E++++ PP V +++A+L
Sbjct: 41 QEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALL 100
Query: 382 MA 383
+
Sbjct: 101 LG 102
>pdb|3J1T|A Chain A, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|A Chain A, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 164
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 39/62 (62%)
Query: 322 EEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVL 381
+E ++ KQ EDL+K EPA++ AQ A+ ++ K +L E++++ PP V +++ +L
Sbjct: 3 QEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESICLL 62
Query: 382 MA 383
+
Sbjct: 63 LG 64
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 794 YFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKSDNLKGRVANLVESITFMTFQYTSRG 853
Y M +F ++ S + + HNA A + + +KG A + + + M + G
Sbjct: 76 YPFMTPIFGEGVVFDASPERRKEMLHNA---ALRGEQMKGHAATIEDQVRRMIADWGEAG 132
Query: 854 LFERDKLIFMAQMTIQVKSLCM 875
E D L F A++TI S C+
Sbjct: 133 --EIDLLDFFAELTIYTSSACL 152
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 794 YFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKSDNLKGRVANLVESITFMTFQYTSRG 853
Y M +F ++ S + + HNA A + + +KG A + + + M + G
Sbjct: 76 YPFMTPIFGEGVVFDASPERRKEMLHNA---ALRGEQMKGHAATIEDQVRRMIADWGEAG 132
Query: 854 LFERDKLIFMAQMTIQVKSLCM 875
E D L F A++TI S C+
Sbjct: 133 --EIDLLDFFAELTIYTSSACL 152
>pdb|2OQ3|A Chain A, Solution Structure Of The Mannitol- Specific Cryptic
Phosphotransferase Enzyme Iia Cmtb From Escherichia Coli
Length = 150
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 623 ESVDPVLDNLIGRNLIRKGKVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLIN 682
E++D + +L+ +N I + + I + I+ P + IL +A PH +PE A T ++
Sbjct: 26 EAIDFSMVSLLDKNYISENYIQAIKDSTINNGPYY--ILAPGVAMPHARPECGALKTGMS 83
Query: 683 FTVTRDGL 690
T+ G+
Sbjct: 84 LTLLEQGV 91
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 794 YFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKSDNLKGRVANLVESITFMTFQYTSRG 853
Y M +F ++ S + + HNA A + + +KG A + + + M + G
Sbjct: 76 YPFMTPIFGEAVVFDASPERRKEMLHNA---ALRGEQMKGHAATIEDQVRRMIADWGEAG 132
Query: 854 LFERDKLIFMAQMTIQVKSLCM 875
E D L F A++TI S C+
Sbjct: 133 --EIDLLDFFAELTIYTSSACL 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,654,098
Number of Sequences: 62578
Number of extensions: 1869399
Number of successful extensions: 4543
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4485
Number of HSP's gapped (non-prelim): 43
length of query: 1637
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1525
effective length of database: 7,964,601
effective search space: 12146016525
effective search space used: 12146016525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)