Query psy2649
Match_columns 1637
No_of_seqs 289 out of 1714
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:38:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 100.0 3E-132 7E-137 1303.7 25.3 691 940-1637 7-707 (707)
2 KOG3595|consensus 100.0 6E-110 1E-114 1137.5 35.1 838 7-861 397-1395(1395)
3 COG5245 DYN1 Dynein, heavy cha 100.0 4.8E-95 1E-99 883.6 23.4 1201 2-1346 1768-3161(3164)
4 PF12780 AAA_8: P-loop contain 100.0 1.6E-56 3.4E-61 509.5 6.1 235 45-287 1-268 (268)
5 PF12777 MT: Microtubule-bindi 100.0 8.3E-48 1.8E-52 458.5 3.0 234 321-555 69-344 (344)
6 PF12781 AAA_9: ATP-binding dy 100.0 3.5E-42 7.6E-47 383.2 6.0 202 562-763 7-228 (228)
7 PF12128 DUF3584: Protein of u 97.1 0.0053 1.1E-07 86.4 15.7 84 429-512 466-557 (1201)
8 PF00004 AAA: ATPase family as 97.0 0.001 2.3E-08 68.5 6.1 69 78-146 1-71 (132)
9 PF07728 AAA_5: AAA domain (dy 96.8 0.00049 1.1E-08 72.0 1.3 84 77-162 1-94 (139)
10 COG2256 MGS1 ATPase related to 96.8 0.0019 4.2E-08 75.9 6.0 72 66-143 38-114 (436)
11 KOG1969|consensus 96.7 0.0013 2.8E-08 82.0 4.6 70 75-144 326-398 (877)
12 PRK14956 DNA polymerase III su 96.3 0.0029 6.3E-08 78.1 4.3 112 67-182 30-172 (484)
13 COG5271 MDN1 AAA ATPase contai 96.3 0.0074 1.6E-07 80.0 7.8 180 1034-1234 1529-1744(4600)
14 PRK14949 DNA polymerase III su 96.3 0.0042 9E-08 81.2 5.2 89 67-159 28-142 (944)
15 PRK12323 DNA polymerase III su 96.1 0.0063 1.4E-07 77.1 5.5 104 76-183 38-176 (700)
16 TIGR02640 gas_vesic_GvpN gas v 96.0 0.0068 1.5E-07 70.7 4.7 95 65-162 12-134 (262)
17 cd00009 AAA The AAA+ (ATPases 95.9 0.011 2.4E-07 61.6 5.4 72 73-144 17-95 (151)
18 PRK07994 DNA polymerase III su 95.8 0.011 2.5E-07 76.0 6.1 88 67-158 28-141 (647)
19 PRK06645 DNA polymerase III su 95.8 0.0095 2.1E-07 75.1 5.3 101 76-183 44-180 (507)
20 PRK04195 replication factor C 95.8 0.013 2.9E-07 74.5 6.4 69 73-145 37-110 (482)
21 PRK14951 DNA polymerase III su 95.7 0.013 2.9E-07 75.3 5.9 111 67-181 28-174 (618)
22 PRK14962 DNA polymerase III su 95.6 0.01 2.2E-07 74.5 4.5 80 65-145 24-129 (472)
23 PRK14960 DNA polymerase III su 95.6 0.011 2.4E-07 75.1 4.6 79 68-147 28-132 (702)
24 PRK07764 DNA polymerase III su 95.5 0.012 2.7E-07 78.3 4.9 110 67-180 27-169 (824)
25 PRK13342 recombination factor 95.5 0.017 3.6E-07 72.2 5.7 84 58-146 18-105 (413)
26 PRK05342 clpX ATP-dependent pr 95.5 0.036 7.9E-07 68.4 8.5 54 56-109 83-142 (412)
27 CHL00195 ycf46 Ycf46; Provisio 95.4 0.039 8.4E-07 69.5 8.7 67 76-143 260-328 (489)
28 PRK10865 protein disaggregatio 95.4 0.018 4E-07 77.8 6.2 92 51-144 176-282 (857)
29 KOG0250|consensus 95.4 0.38 8.2E-06 63.6 17.3 32 589-620 573-604 (1074)
30 TIGR00635 ruvB Holliday juncti 95.4 0.018 3.8E-07 69.0 5.3 79 73-158 28-106 (305)
31 PLN00020 ribulose bisphosphate 95.4 0.034 7.4E-07 65.8 7.2 87 55-144 126-223 (413)
32 PHA02544 44 clamp loader, smal 95.4 0.019 4.2E-07 69.0 5.6 68 76-144 43-111 (316)
33 PF05496 RuvB_N: Holliday junc 95.2 0.019 4.1E-07 63.6 4.5 66 73-145 48-113 (233)
34 PRK14952 DNA polymerase III su 95.2 0.028 6E-07 72.2 6.5 112 67-182 25-169 (584)
35 PRK07003 DNA polymerase III su 95.2 0.023 4.9E-07 73.2 5.5 109 69-181 30-169 (830)
36 PRK13341 recombination factor 95.0 0.024 5.1E-07 74.7 5.2 86 59-145 35-121 (725)
37 PRK11034 clpA ATP-dependent Cl 95.0 0.022 4.9E-07 75.3 4.8 109 54-163 460-587 (758)
38 PRK14961 DNA polymerase III su 94.9 0.033 7.2E-07 68.2 5.8 105 69-180 30-168 (363)
39 PRK11331 5-methylcytosine-spec 94.9 0.075 1.6E-06 65.2 8.6 113 30-146 133-285 (459)
40 PRK14958 DNA polymerase III su 94.9 0.033 7.1E-07 70.8 5.9 88 67-158 28-141 (509)
41 TIGR03345 VI_ClpV1 type VI sec 94.9 0.039 8.5E-07 74.5 6.9 91 51-144 185-291 (852)
42 PRK14959 DNA polymerase III su 94.8 0.039 8.6E-07 70.6 6.3 81 65-146 26-132 (624)
43 PRK07133 DNA polymerase III su 94.7 0.043 9.3E-07 71.3 6.2 88 67-158 30-140 (725)
44 PF12781 AAA_9: ATP-binding dy 94.7 0.025 5.5E-07 64.0 3.8 119 1046-1181 32-162 (228)
45 TIGR01650 PD_CobS cobaltochela 94.7 0.026 5.5E-07 66.7 3.8 85 73-159 62-160 (327)
46 COG5245 DYN1 Dynein, heavy cha 94.7 0.031 6.8E-07 74.1 4.7 175 335-510 2530-2738(3164)
47 PF13401 AAA_22: AAA domain; P 94.6 0.017 3.8E-07 59.4 2.0 90 73-162 2-117 (131)
48 PRK14964 DNA polymerase III su 94.6 0.047 1E-06 68.5 6.1 104 77-184 37-169 (491)
49 TIGR02639 ClpA ATP-dependent C 94.5 0.046 1E-06 73.2 6.2 77 66-143 193-284 (731)
50 PLN03025 replication factor C 94.4 0.063 1.4E-06 64.7 6.5 69 76-144 35-110 (319)
51 TIGR03015 pepcterm_ATPase puta 94.3 0.072 1.6E-06 62.5 6.4 88 69-156 37-146 (269)
52 PRK14950 DNA polymerase III su 94.2 0.055 1.2E-06 70.4 5.8 104 75-182 37-171 (585)
53 PRK14963 DNA polymerase III su 94.2 0.082 1.8E-06 67.1 7.1 68 75-143 35-126 (504)
54 PRK00080 ruvB Holliday junctio 94.2 0.056 1.2E-06 65.4 5.3 67 72-145 48-114 (328)
55 smart00382 AAA ATPases associa 94.0 0.088 1.9E-06 54.2 5.9 38 74-111 1-41 (148)
56 PRK14957 DNA polymerase III su 94.0 0.059 1.3E-06 68.6 5.3 112 67-182 28-170 (546)
57 PRK05896 DNA polymerase III su 94.0 0.072 1.6E-06 67.9 6.0 111 68-182 29-170 (605)
58 TIGR03346 chaperone_ClpB ATP-d 94.0 0.074 1.6E-06 72.4 6.6 79 64-143 182-276 (852)
59 TIGR02639 ClpA ATP-dependent C 94.0 0.064 1.4E-06 71.9 5.9 102 57-163 459-583 (731)
60 PRK08691 DNA polymerase III su 94.0 0.053 1.1E-06 69.8 4.7 75 67-145 28-131 (709)
61 TIGR00382 clpX endopeptidase C 94.0 0.14 2.9E-06 63.1 8.1 35 75-109 116-150 (413)
62 CHL00095 clpC Clp protease ATP 94.0 0.083 1.8E-06 71.7 6.9 78 64-143 188-281 (821)
63 CHL00176 ftsH cell division pr 93.7 0.083 1.8E-06 68.8 5.9 87 57-144 188-286 (638)
64 TIGR01243 CDC48 AAA family ATP 93.5 0.18 3.9E-06 67.8 8.9 70 71-143 484-556 (733)
65 TIGR03185 DNA_S_dndD DNA sulfu 93.4 2 4.2E-05 57.2 18.1 24 76-99 29-52 (650)
66 PRK14969 DNA polymerase III su 93.4 0.13 2.8E-06 66.0 6.8 67 75-145 37-131 (527)
67 PRK05201 hslU ATP-dependent pr 93.3 0.18 3.9E-06 61.3 7.3 54 75-128 50-107 (443)
68 PTZ00454 26S protease regulato 93.3 0.24 5.3E-06 61.0 8.7 68 74-143 178-248 (398)
69 PRK14954 DNA polymerase III su 93.2 0.096 2.1E-06 67.8 5.3 109 67-182 28-178 (620)
70 TIGR02881 spore_V_K stage V sp 93.2 0.15 3.3E-06 59.5 6.5 66 74-144 41-116 (261)
71 PRK03992 proteasome-activating 93.1 0.12 2.5E-06 64.0 5.8 69 74-144 164-235 (389)
72 KOG0730|consensus 93.1 0.21 4.5E-06 62.8 7.6 100 24-141 432-535 (693)
73 PRK14955 DNA polymerase III su 93.0 0.1 2.2E-06 64.7 5.0 108 67-181 28-177 (397)
74 PRK05563 DNA polymerase III su 93.0 0.11 2.4E-06 67.0 5.4 81 75-159 37-142 (559)
75 PRK12402 replication factor C 92.8 0.11 2.4E-06 63.1 4.9 30 70-99 30-60 (337)
76 TIGR00390 hslU ATP-dependent p 92.8 0.31 6.7E-06 59.3 8.3 54 75-128 47-104 (441)
77 TIGR01241 FtsH_fam ATP-depende 92.8 0.1 2.3E-06 66.8 4.7 67 76-143 89-157 (495)
78 PRK14948 DNA polymerase III su 92.7 0.16 3.5E-06 66.1 6.3 65 77-145 40-133 (620)
79 PRK07940 DNA polymerase III su 92.7 0.16 3.5E-06 62.4 6.0 69 75-147 35-131 (394)
80 KOG2028|consensus 92.7 0.19 4.1E-06 58.3 6.0 62 76-142 163-231 (554)
81 COG0464 SpoVK ATPases of the A 92.6 0.37 8E-06 61.9 9.5 71 70-142 271-344 (494)
82 PRK14953 DNA polymerase III su 92.6 0.15 3.2E-06 64.6 5.7 104 75-182 37-170 (486)
83 KOG0994|consensus 92.6 0.5 1.1E-05 61.6 9.9 104 357-473 1476-1583(1758)
84 TIGR02169 SMC_prok_A chromosom 92.6 1.3 2.9E-05 63.4 16.0 321 70-521 18-397 (1164)
85 TIGR02640 gas_vesic_GvpN gas v 92.4 0.29 6.3E-06 57.2 7.3 120 1048-1172 21-186 (262)
86 TIGR00763 lon ATP-dependent pr 92.3 0.23 5E-06 67.1 7.1 66 77-144 349-425 (775)
87 PTZ00361 26 proteosome regulat 92.2 0.17 3.6E-06 63.0 5.2 66 74-141 216-284 (438)
88 TIGR02928 orc1/cdc6 family rep 92.1 0.23 4.9E-06 61.1 6.3 25 74-98 39-63 (365)
89 PRK11034 clpA ATP-dependent Cl 92.1 0.12 2.6E-06 68.6 4.0 84 54-141 188-286 (758)
90 PRK09111 DNA polymerase III su 92.1 0.17 3.7E-06 65.4 5.3 120 53-182 25-183 (598)
91 PRK00440 rfc replication facto 91.9 0.23 5E-06 59.8 6.1 68 76-143 39-112 (319)
92 TIGR01242 26Sp45 26S proteasom 91.8 0.16 3.4E-06 62.5 4.5 67 75-143 156-225 (364)
93 KOG0733|consensus 91.7 0.22 4.7E-06 61.7 5.3 67 76-144 546-615 (802)
94 PRK06647 DNA polymerase III su 91.5 0.29 6.2E-06 63.1 6.5 79 67-146 28-132 (563)
95 TIGR02880 cbbX_cfxQ probable R 91.3 0.78 1.7E-05 54.2 9.3 26 74-99 57-82 (284)
96 COG0714 MoxR-like ATPases [Gen 91.2 0.17 3.7E-06 61.3 3.8 44 73-116 41-84 (329)
97 PHA02244 ATPase-like protein 91.1 0.16 3.4E-06 60.9 3.3 91 65-161 110-208 (383)
98 PF07726 AAA_3: ATPase family 91.0 0.14 3.1E-06 51.8 2.4 35 77-111 1-35 (131)
99 PRK14965 DNA polymerase III su 91.0 0.26 5.7E-06 63.9 5.5 104 76-183 38-171 (576)
100 KOG0743|consensus 91.0 0.3 6.4E-06 59.2 5.4 56 77-138 237-292 (457)
101 PF00931 NB-ARC: NB-ARC domain 90.9 0.54 1.2E-05 55.6 7.7 52 63-114 4-63 (287)
102 PRK10733 hflB ATP-dependent me 90.9 0.35 7.5E-06 63.8 6.5 67 74-142 185-253 (644)
103 PF05673 DUF815: Protein of un 90.9 0.52 1.1E-05 53.3 6.8 63 73-142 50-115 (249)
104 KOG0738|consensus 90.6 0.27 5.9E-06 57.9 4.5 57 72-130 242-302 (491)
105 PF07724 AAA_2: AAA domain (Cd 90.3 0.13 2.9E-06 55.6 1.6 41 73-114 1-45 (171)
106 TIGR01243 CDC48 AAA family ATP 90.1 0.37 8E-06 64.9 5.8 69 73-143 210-281 (733)
107 cd01129 PulE-GspE PulE/GspE Th 90.0 0.38 8.1E-06 56.2 5.1 45 63-107 68-115 (264)
108 PRK08118 topology modulation p 89.9 0.47 1E-05 51.3 5.4 31 77-107 3-33 (167)
109 PRK13949 shikimate kinase; Pro 89.9 0.29 6.3E-06 53.0 3.8 31 77-107 3-33 (169)
110 PRK13948 shikimate kinase; Pro 89.8 0.38 8.3E-06 52.7 4.6 56 73-128 8-76 (182)
111 TIGR03689 pup_AAA proteasome A 89.7 0.45 9.7E-06 60.2 5.7 69 74-143 215-299 (512)
112 PF00448 SRP54: SRP54-type pro 89.7 0.45 9.8E-06 52.8 5.2 51 78-130 4-57 (196)
113 PF03028 Dynein_heavy: Dynein 89.5 1 2.3E-05 60.4 9.4 105 590-707 145-252 (707)
114 KOG0733|consensus 88.9 0.67 1.5E-05 57.6 6.1 91 74-181 222-316 (802)
115 TIGR00602 rad24 checkpoint pro 88.9 0.56 1.2E-05 60.9 5.9 52 54-105 86-140 (637)
116 PRK05564 DNA polymerase III su 88.7 0.59 1.3E-05 56.2 5.7 112 67-182 16-144 (313)
117 COG0470 HolB ATPase involved i 88.6 0.52 1.1E-05 56.8 5.2 85 75-162 23-135 (325)
118 PRK10865 protein disaggregatio 88.6 0.51 1.1E-05 64.2 5.5 108 54-162 570-699 (857)
119 COG3074 Uncharacterized protei 88.5 2.3 5E-05 37.2 7.3 71 434-518 6-76 (79)
120 PRK00411 cdc6 cell division co 88.5 0.99 2.2E-05 56.2 7.7 36 74-109 54-94 (394)
121 COG5271 MDN1 AAA ATPase contai 88.3 0.68 1.5E-05 62.9 5.9 100 1043-1147 883-1009(4600)
122 TIGR03345 VI_ClpV1 type VI sec 88.0 0.4 8.7E-06 65.0 3.9 110 53-163 567-698 (852)
123 PRK08154 anaerobic benzoate ca 88.0 0.52 1.1E-05 56.4 4.5 48 58-106 117-164 (309)
124 PF13207 AAA_17: AAA domain; P 88.0 0.45 9.7E-06 48.2 3.4 31 78-108 2-32 (121)
125 COG0466 Lon ATP-dependent Lon 87.9 0.92 2E-05 57.9 6.5 52 59-110 334-385 (782)
126 TIGR00767 rho transcription te 87.9 0.72 1.6E-05 56.0 5.5 87 74-163 167-282 (415)
127 CHL00095 clpC Clp protease ATP 87.5 0.61 1.3E-05 63.5 5.3 106 53-163 510-641 (821)
128 COG3638 ABC-type phosphate/pho 87.5 1.5 3.2E-05 49.0 7.0 98 74-180 29-134 (258)
129 KOG0736|consensus 87.4 0.66 1.4E-05 59.2 4.9 94 74-181 704-800 (953)
130 TIGR03346 chaperone_ClpB ATP-d 87.4 0.69 1.5E-05 63.2 5.7 110 53-163 566-697 (852)
131 PF13245 AAA_19: Part of AAA d 87.4 0.52 1.1E-05 43.6 3.1 31 68-99 4-35 (76)
132 TIGR03420 DnaA_homol_Hda DnaA 87.2 0.93 2E-05 51.5 5.9 27 73-99 36-62 (226)
133 PRK10787 DNA-binding ATP-depen 87.1 1 2.2E-05 60.5 6.9 68 74-143 348-426 (784)
134 PF01637 Arch_ATPase: Archaeal 87.1 0.38 8.2E-06 54.7 2.5 36 64-99 8-44 (234)
135 PRK13947 shikimate kinase; Pro 87.0 0.72 1.6E-05 49.9 4.5 31 77-107 3-33 (171)
136 KOG3354|consensus 87.0 1.1 2.4E-05 46.3 5.3 67 75-141 12-93 (191)
137 PRK08084 DNA replication initi 86.9 0.44 9.5E-06 54.7 2.9 23 76-98 46-68 (235)
138 PRK07261 topology modulation p 86.9 1 2.2E-05 48.9 5.6 31 77-107 2-32 (171)
139 PRK06305 DNA polymerase III su 86.7 0.66 1.4E-05 58.4 4.6 101 76-183 39-173 (451)
140 PRK08451 DNA polymerase III su 86.7 1.1 2.3E-05 57.2 6.3 66 75-144 35-128 (535)
141 PF12128 DUF3584: Protein of u 86.6 6 0.00013 56.4 14.4 107 73-180 15-155 (1201)
142 COG2255 RuvB Holliday junction 86.5 1.5 3.1E-05 50.2 6.5 72 65-143 42-113 (332)
143 PF13173 AAA_14: AAA domain 86.5 0.63 1.4E-05 47.8 3.5 82 76-160 3-87 (128)
144 PRK14088 dnaA chromosomal repl 86.3 0.64 1.4E-05 58.4 4.1 72 67-144 120-205 (440)
145 KOG0734|consensus 86.1 0.93 2E-05 55.5 5.0 62 74-143 337-406 (752)
146 PRK15422 septal ring assembly 86.0 4.3 9.3E-05 37.0 7.8 70 434-517 6-75 (79)
147 COG4942 Membrane-bound metallo 85.8 3.9 8.5E-05 49.6 10.0 114 432-545 38-162 (420)
148 PRK00625 shikimate kinase; Pro 85.8 0.53 1.2E-05 51.1 2.7 31 77-107 2-32 (173)
149 PF12774 AAA_6: Hydrolytic ATP 85.8 1.4 3.1E-05 50.2 6.2 115 1052-1172 36-168 (231)
150 PRK13946 shikimate kinase; Pro 85.6 0.72 1.6E-05 50.8 3.7 31 77-107 12-42 (184)
151 PLN02199 shikimate kinase 85.4 0.87 1.9E-05 53.1 4.2 79 56-137 83-177 (303)
152 PRK07952 DNA replication prote 85.3 1.5 3.2E-05 50.4 6.1 61 60-126 84-147 (244)
153 COG1579 Zn-ribbon protein, pos 85.3 1.3 2.9E-05 49.8 5.5 88 429-521 28-115 (239)
154 KOG1029|consensus 85.3 4.6 0.0001 51.2 10.4 90 430-519 435-524 (1118)
155 PRK05057 aroK shikimate kinase 85.2 0.91 2E-05 49.4 4.2 33 75-107 4-36 (172)
156 PRK11637 AmiB activator; Provi 85.2 3.8 8.3E-05 51.5 10.3 70 429-498 44-120 (428)
157 PRK05707 DNA polymerase III su 85.2 1 2.2E-05 54.2 5.0 105 76-184 22-159 (328)
158 COG0703 AroK Shikimate kinase 85.2 1.2 2.6E-05 47.8 4.9 103 76-184 3-118 (172)
159 TIGR02397 dnaX_nterm DNA polym 85.2 1.1 2.4E-05 54.8 5.4 25 76-100 36-61 (355)
160 KOG0731|consensus 85.2 0.88 1.9E-05 59.2 4.5 124 24-182 309-442 (774)
161 CHL00181 cbbX CbbX; Provisiona 85.1 1.5 3.3E-05 51.8 6.2 26 74-99 58-83 (287)
162 PRK13531 regulatory ATPase Rav 84.8 0.68 1.5E-05 57.6 3.2 37 63-99 27-63 (498)
163 PF12718 Tropomyosin_1: Tropom 84.4 4.5 9.7E-05 42.4 8.6 61 459-519 79-139 (143)
164 PRK14970 DNA polymerase III su 83.9 1.8 3.9E-05 53.3 6.5 65 76-144 40-119 (367)
165 PRK12377 putative replication 83.6 1.5 3.2E-05 50.5 5.2 47 73-125 99-148 (248)
166 PLN02165 adenylate isopentenyl 83.3 1.6 3.5E-05 51.9 5.4 31 72-102 39-70 (334)
167 PRK09087 hypothetical protein; 83.3 0.88 1.9E-05 51.8 3.1 29 74-102 43-71 (226)
168 PF06005 DUF904: Protein of un 83.2 11 0.00024 34.5 9.3 59 432-490 4-62 (72)
169 PRK00131 aroK shikimate kinase 83.2 1.4 3E-05 47.7 4.5 32 76-107 5-36 (175)
170 PRK03839 putative kinase; Prov 82.9 0.83 1.8E-05 50.0 2.7 30 77-106 2-31 (180)
171 PTZ00202 tuzin; Provisional 82.7 2.5 5.5E-05 51.6 6.6 113 54-178 261-382 (550)
172 PF00025 Arf: ADP-ribosylation 81.9 1.7 3.6E-05 47.4 4.6 28 69-96 7-35 (175)
173 cd01128 rho_factor Transcripti 81.8 2.6 5.6E-05 48.6 6.2 104 74-179 15-150 (249)
174 KOG0991|consensus 81.8 3 6.4E-05 46.1 6.1 89 53-143 28-123 (333)
175 PF08317 Spc7: Spc7 kinetochor 81.5 5.8 0.00013 47.8 9.3 83 431-516 208-290 (325)
176 PRK10884 SH3 domain-containing 81.4 8 0.00017 43.1 9.6 72 424-495 85-160 (206)
177 TIGR01420 pilT_fam pilus retra 81.3 1.9 4E-05 52.6 5.1 33 67-99 114-147 (343)
178 PF00158 Sigma54_activat: Sigm 81.2 1.4 2.9E-05 47.8 3.5 101 58-163 5-123 (168)
179 TIGR01313 therm_gnt_kin carboh 81.2 1.9 4.1E-05 46.2 4.7 28 78-105 1-28 (163)
180 PRK06217 hypothetical protein; 81.2 1.1 2.3E-05 49.3 2.7 30 77-106 3-32 (183)
181 cd00464 SK Shikimate kinase (S 81.1 1.2 2.6E-05 47.1 3.0 31 77-107 1-31 (154)
182 CHL00206 ycf2 Ycf2; Provisiona 80.8 2.2 4.8E-05 60.4 5.9 37 74-110 1629-1665(2281)
183 COG1219 ClpX ATP-dependent pro 80.8 2.4 5.3E-05 49.0 5.3 100 26-129 47-155 (408)
184 PRK14971 DNA polymerase III su 80.7 2 4.3E-05 56.2 5.3 99 76-181 39-171 (614)
185 TIGR02903 spore_lon_C ATP-depe 80.7 2.1 4.6E-05 56.1 5.7 25 75-99 175-199 (615)
186 cd01131 PilT Pilus retraction 80.7 1.9 4.1E-05 48.0 4.5 25 75-99 1-26 (198)
187 KOG0728|consensus 80.6 0.63 1.4E-05 51.4 0.6 36 71-107 178-213 (404)
188 TIGR03499 FlhF flagellar biosy 80.5 6.4 0.00014 46.5 9.1 33 75-107 194-231 (282)
189 KOG0739|consensus 80.3 2.1 4.6E-05 48.8 4.6 66 73-141 164-233 (439)
190 PRK00149 dnaA chromosomal repl 80.2 1.8 3.8E-05 54.9 4.6 24 76-99 149-172 (450)
191 COG2607 Predicted ATPase (AAA+ 80.1 4.8 0.0001 45.1 7.1 65 73-144 83-150 (287)
192 PRK13407 bchI magnesium chelat 80.0 1.2 2.7E-05 53.4 3.0 27 74-100 27-54 (334)
193 PRK06893 DNA replication initi 79.9 4.2 9.1E-05 46.4 7.1 23 76-98 40-62 (229)
194 COG3883 Uncharacterized protei 79.9 9.9 0.00022 43.5 9.7 67 427-493 33-99 (265)
195 KOG2004|consensus 79.9 3.2 6.9E-05 53.0 6.3 51 60-111 423-474 (906)
196 PHA02562 46 endonuclease subun 79.7 14 0.0003 48.4 12.9 27 75-101 27-53 (562)
197 PRK08903 DnaA regulatory inact 79.6 2.2 4.9E-05 48.5 4.8 26 74-99 41-66 (227)
198 KOG1962|consensus 79.3 6.2 0.00013 43.6 7.7 62 430-491 149-210 (216)
199 COG4619 ABC-type uncharacteriz 79.3 1.9 4.2E-05 45.4 3.6 60 73-132 27-90 (223)
200 COG1222 RPT1 ATP-dependent 26S 79.2 3.5 7.5E-05 48.8 6.0 67 72-141 183-252 (406)
201 PRK11637 AmiB activator; Provi 79.2 6 0.00013 49.8 8.8 71 428-498 57-127 (428)
202 PRK11608 pspF phage shock prot 78.7 1.7 3.6E-05 52.6 3.5 55 55-109 9-66 (326)
203 PF10473 CENP-F_leu_zip: Leuci 78.7 9.3 0.0002 39.6 8.3 82 435-516 13-94 (140)
204 KOG0735|consensus 78.5 2.7 5.8E-05 53.5 5.1 68 75-144 701-771 (952)
205 PRK08116 hypothetical protein; 78.3 3.3 7.1E-05 48.5 5.7 42 78-125 117-161 (268)
206 KOG0735|consensus 78.1 2.4 5.3E-05 53.8 4.6 69 75-144 431-505 (952)
207 PRK06620 hypothetical protein; 78.0 1.5 3.2E-05 49.5 2.6 26 76-101 45-70 (214)
208 PRK10078 ribose 1,5-bisphospho 77.9 1.5 3.2E-05 48.3 2.6 27 76-102 3-29 (186)
209 PRK14532 adenylate kinase; Pro 77.9 1.5 3.3E-05 48.3 2.7 28 77-104 2-29 (188)
210 PRK10436 hypothetical protein; 77.9 3 6.4E-05 52.5 5.4 45 63-107 206-253 (462)
211 PRK03731 aroL shikimate kinase 77.7 1.7 3.7E-05 47.1 2.9 31 76-106 3-33 (171)
212 TIGR02902 spore_lonB ATP-depen 77.6 1.7 3.6E-05 56.1 3.2 54 54-109 67-130 (531)
213 PRK09183 transposase/IS protei 77.5 3.4 7.5E-05 48.1 5.5 31 74-104 101-134 (259)
214 KOG0994|consensus 77.5 5.6 0.00012 52.6 7.6 85 425-509 1661-1745(1758)
215 PF05278 PEARLI-4: Arabidopsis 77.4 15 0.00033 42.0 10.2 70 451-527 198-267 (269)
216 TIGR02533 type_II_gspE general 77.4 2.9 6.2E-05 53.2 5.2 44 63-106 230-276 (486)
217 cd03281 ABC_MSH5_euk MutS5 hom 77.4 3.8 8.2E-05 46.2 5.7 66 76-141 30-116 (213)
218 cd02027 APSK Adenosine 5'-phos 77.3 4.5 9.7E-05 42.8 5.9 29 78-106 2-33 (149)
219 PRK00091 miaA tRNA delta(2)-is 77.3 3.4 7.3E-05 49.2 5.4 64 77-142 6-102 (307)
220 cd02021 GntK Gluconate kinase 77.1 1.8 3.8E-05 45.8 2.8 28 78-105 2-29 (150)
221 PF13177 DNA_pol3_delta2: DNA 77.1 3.3 7.2E-05 44.5 4.9 90 67-160 9-126 (162)
222 COG3074 Uncharacterized protei 77.1 22 0.00047 31.5 8.5 63 428-490 7-69 (79)
223 COG0465 HflB ATP-dependent Zn 77.0 2.8 6E-05 53.6 4.8 93 72-183 181-281 (596)
224 TIGR00150 HI0065_YjeE ATPase, 76.9 2.8 6E-05 43.3 4.0 36 66-102 14-49 (133)
225 COG1122 CbiO ABC-type cobalt t 76.9 3.7 7.9E-05 46.9 5.4 95 74-179 29-123 (235)
226 PRK08181 transposase; Validate 76.8 3.1 6.7E-05 48.6 4.8 46 74-125 105-153 (269)
227 COG1224 TIP49 DNA helicase TIP 76.7 4.7 0.0001 47.5 6.1 73 59-138 49-132 (450)
228 PRK14530 adenylate kinase; Pro 76.7 2 4.4E-05 48.5 3.3 29 77-105 5-33 (215)
229 PF00005 ABC_tran: ABC transpo 76.7 1.7 3.8E-05 44.9 2.5 28 74-101 10-37 (137)
230 PF14532 Sigma54_activ_2: Sigm 76.7 2 4.4E-05 44.8 3.0 80 70-159 16-95 (138)
231 PRK08058 DNA polymerase III su 76.4 3.8 8.2E-05 49.6 5.7 112 66-184 17-163 (329)
232 PHA02244 ATPase-like protein 76.3 4.9 0.00011 48.6 6.3 78 605-685 173-260 (383)
233 COG0542 clpA ATP-binding subun 76.2 2.4 5.2E-05 55.7 4.1 103 53-162 492-622 (786)
234 TIGR00362 DnaA chromosomal rep 76.2 3 6.5E-05 52.1 4.9 30 77-106 138-172 (405)
235 PRK12422 chromosomal replicati 76.0 2.8 6.1E-05 52.7 4.6 63 76-144 142-213 (445)
236 PF13671 AAA_33: AAA domain; P 76.0 2.2 4.7E-05 44.5 3.1 27 78-104 2-28 (143)
237 PRK09825 idnK D-gluconate kina 75.5 2.1 4.5E-05 46.7 2.9 30 73-102 1-30 (176)
238 PRK06547 hypothetical protein; 75.4 2.7 5.7E-05 45.7 3.6 30 77-106 17-46 (172)
239 PRK04040 adenylate kinase; Pro 75.3 3.1 6.7E-05 45.9 4.1 43 77-130 4-48 (188)
240 PHA02562 46 endonuclease subun 75.2 17 0.00036 47.6 11.7 72 438-509 336-407 (562)
241 PRK08699 DNA polymerase III su 75.1 4.3 9.3E-05 48.9 5.6 103 76-182 21-164 (325)
242 KOG1962|consensus 75.0 8.5 0.00018 42.6 7.2 56 430-485 156-211 (216)
243 PF03215 Rad17: Rad17 cell cyc 74.9 2.3 4.9E-05 54.3 3.3 33 74-106 44-76 (519)
244 COG3839 MalK ABC-type sugar tr 74.9 1.8 3.8E-05 51.8 2.2 33 74-106 28-60 (338)
245 COG1419 FlhF Flagellar GTP-bin 74.8 4.4 9.4E-05 49.2 5.4 27 73-99 201-228 (407)
246 PRK05642 DNA replication initi 74.8 8.2 0.00018 44.2 7.6 33 75-107 45-80 (234)
247 KOG0996|consensus 74.8 47 0.001 45.1 14.8 42 119-160 209-263 (1293)
248 COG1119 ModF ABC-type molybden 74.7 2.1 4.6E-05 48.1 2.6 52 73-125 55-108 (257)
249 PF06068 TIP49: TIP49 C-termin 74.5 2.4 5.1E-05 50.7 3.1 75 59-133 34-112 (398)
250 COG1223 Predicted ATPase (AAA+ 74.5 3.7 7.9E-05 46.2 4.3 88 55-143 118-220 (368)
251 PF07888 CALCOCO1: Calcium bin 74.2 11 0.00025 47.4 8.9 90 430-519 141-230 (546)
252 PRK06526 transposase; Provisio 74.1 3.2 6.9E-05 48.1 4.0 44 74-123 97-143 (254)
253 PRK09112 DNA polymerase III su 74.0 5.1 0.00011 48.7 5.9 33 67-99 35-70 (351)
254 PRK01184 hypothetical protein; 74.0 3.6 7.7E-05 45.2 4.2 26 78-104 4-29 (184)
255 PRK12723 flagellar biosynthesi 73.8 7 0.00015 48.1 7.0 25 75-99 174-199 (388)
256 TIGR03754 conj_TOL_TraD conjug 73.7 4.6 9.9E-05 52.4 5.6 87 74-174 179-268 (643)
257 PRK14087 dnaA chromosomal repl 73.6 4.6 0.0001 51.0 5.6 69 71-145 134-218 (450)
258 PRK14021 bifunctional shikimat 73.6 3.4 7.4E-05 53.4 4.6 62 75-137 6-80 (542)
259 KOG0651|consensus 73.6 5.1 0.00011 46.4 5.3 70 74-145 165-237 (388)
260 TIGR00764 lon_rel lon-related 73.5 4.1 9E-05 53.3 5.3 29 74-102 36-64 (608)
261 TIGR00174 miaA tRNA isopenteny 73.5 5 0.00011 47.2 5.5 72 78-158 2-106 (287)
262 PF06048 DUF927: Domain of unk 73.4 7 0.00015 46.3 6.8 109 24-148 149-257 (286)
263 PRK13765 ATP-dependent proteas 73.4 2.9 6.2E-05 54.7 3.8 51 75-126 50-101 (637)
264 PF00261 Tropomyosin: Tropomyo 72.9 6.6 0.00014 45.1 6.2 105 416-520 111-229 (237)
265 COG3267 ExeA Type II secretory 72.7 6.8 0.00015 44.5 5.9 95 63-157 39-155 (269)
266 PTZ00088 adenylate kinase 1; P 72.7 2.5 5.5E-05 48.1 2.8 30 77-106 8-37 (229)
267 PF13191 AAA_16: AAA ATPase do 72.7 2.6 5.6E-05 46.0 2.8 33 69-101 18-51 (185)
268 PRK02224 chromosome segregatio 72.7 12 0.00025 52.0 9.8 28 71-98 19-46 (880)
269 cd00820 PEPCK_HprK Phosphoenol 72.6 2.5 5.3E-05 41.9 2.2 22 75-96 15-36 (107)
270 TIGR01360 aden_kin_iso1 adenyl 72.6 2.7 5.9E-05 46.1 2.9 26 78-103 6-31 (188)
271 COG0542 clpA ATP-binding subun 72.6 6.2 0.00013 52.0 6.4 97 41-141 152-270 (786)
272 TIGR02538 type_IV_pilB type IV 72.5 4 8.8E-05 53.1 4.8 39 62-100 303-342 (564)
273 PRK00300 gmk guanylate kinase; 72.4 2.5 5.4E-05 47.3 2.6 28 73-100 3-30 (205)
274 COG4026 Uncharacterized protei 72.3 9.2 0.0002 41.5 6.4 52 417-468 127-178 (290)
275 TIGR01359 UMP_CMP_kin_fam UMP- 72.1 2.8 6E-05 45.9 2.8 27 78-104 2-28 (183)
276 PF13555 AAA_29: P-loop contai 71.9 2.4 5.2E-05 37.4 1.8 24 74-97 21-45 (62)
277 cd03292 ABC_FtsE_transporter F 71.8 2.5 5.3E-05 47.7 2.4 27 74-100 26-52 (214)
278 TIGR02894 DNA_bind_RsfA transc 71.7 21 0.00045 37.6 8.7 55 444-498 102-156 (161)
279 PRK10884 SH3 domain-containing 71.7 17 0.00037 40.5 8.8 68 426-493 94-165 (206)
280 PF01078 Mg_chelatase: Magnesi 71.6 2.7 5.9E-05 46.5 2.6 26 74-99 21-46 (206)
281 PF12329 TMF_DNA_bd: TATA elem 71.6 16 0.00034 33.7 7.0 66 427-492 7-72 (74)
282 PF10146 zf-C4H2: Zinc finger- 71.4 16 0.00036 41.4 8.6 76 441-516 13-88 (230)
283 PF06005 DUF904: Protein of un 71.3 20 0.00044 32.8 7.5 63 441-517 6-68 (72)
284 COG3842 PotA ABC-type spermidi 71.3 2.6 5.5E-05 50.8 2.4 62 1417-1485 171-245 (352)
285 cd00227 CPT Chloramphenicol (C 71.3 2.8 6.2E-05 45.6 2.6 29 76-104 3-31 (175)
286 PRK12608 transcription termina 71.2 6.7 0.00015 47.5 5.9 26 75-100 133-159 (380)
287 cd01428 ADK Adenylate kinase ( 71.0 3 6.6E-05 46.0 2.9 28 78-105 2-29 (194)
288 KOG3347|consensus 71.0 3.3 7.1E-05 42.9 2.7 60 75-145 7-66 (176)
289 TIGR00678 holB DNA polymerase 71.0 7.5 0.00016 42.8 6.0 24 76-99 14-38 (188)
290 PRK14531 adenylate kinase; Pro 70.9 3.1 6.6E-05 45.7 2.8 28 77-104 4-31 (183)
291 cd02020 CMPK Cytidine monophos 70.7 5.5 0.00012 41.6 4.6 30 78-107 2-31 (147)
292 KOG2228|consensus 70.2 4.6 9.9E-05 47.4 4.0 98 30-135 7-110 (408)
293 TIGR03495 phage_LysB phage lys 70.2 26 0.00056 36.2 8.9 78 432-509 19-99 (135)
294 PF07106 TBPIP: Tat binding pr 70.0 15 0.00033 39.7 7.9 67 429-495 69-137 (169)
295 PF08647 BRE1: BRE1 E3 ubiquit 70.0 27 0.00058 34.0 8.7 70 433-502 11-80 (96)
296 COG0552 FtsY Signal recognitio 70.0 14 0.00031 43.7 8.0 51 76-130 139-195 (340)
297 cd03264 ABC_drug_resistance_li 69.6 2.9 6.3E-05 47.0 2.3 26 75-100 25-50 (211)
298 PRK10869 recombination and rep 69.4 69 0.0015 41.7 15.0 329 71-490 18-386 (553)
299 PRK09039 hypothetical protein; 69.4 18 0.0004 43.8 9.2 64 431-494 122-185 (343)
300 PRK15455 PrkA family serine pr 69.4 4.6 9.9E-05 51.3 4.1 41 61-101 89-130 (644)
301 KOG0727|consensus 69.3 8.5 0.00018 43.0 5.6 66 73-141 188-256 (408)
302 COG3265 GntK Gluconate kinase 69.3 7.3 0.00016 40.5 4.8 92 82-180 2-110 (161)
303 COG0563 Adk Adenylate kinase a 69.3 3.6 7.7E-05 45.0 2.8 29 77-107 2-30 (178)
304 PRK07993 DNA polymerase III su 69.2 7.2 0.00016 47.2 5.7 118 62-183 9-160 (334)
305 COG1116 TauB ABC-type nitrate/ 69.1 2.9 6.4E-05 47.3 2.2 33 74-106 28-60 (248)
306 PRK11889 flhF flagellar biosyn 69.1 15 0.00033 44.8 8.2 25 76-100 242-267 (436)
307 TIGR01817 nifA Nif-specific re 69.1 3.6 7.7E-05 53.5 3.3 57 53-109 197-256 (534)
308 PRK14722 flhF flagellar biosyn 69.0 8.5 0.00019 47.0 6.2 26 74-99 136-162 (374)
309 cd03301 ABC_MalK_N The N-termi 68.9 3.2 7E-05 46.7 2.5 27 74-100 25-51 (213)
310 TIGR02974 phageshock_pspF psp 68.7 4.5 9.8E-05 48.9 3.8 51 59-109 6-59 (329)
311 PRK07003 DNA polymerase III su 68.6 28 0.00061 46.0 10.9 88 613-716 120-208 (830)
312 cd03269 ABC_putative_ATPase Th 68.6 3.2 7E-05 46.6 2.4 27 74-100 25-51 (210)
313 cd02025 PanK Pantothenate kina 68.4 6.7 0.00014 44.5 4.9 21 79-99 3-23 (220)
314 TIGR03238 dnd_assoc_3 dnd syst 68.4 8.2 0.00018 48.1 5.9 64 74-138 31-97 (504)
315 cd03263 ABC_subfamily_A The AB 68.2 3.3 7.2E-05 46.9 2.4 27 74-100 27-53 (220)
316 PRK04778 septation ring format 68.2 1.3E+02 0.0029 39.4 17.3 36 272-307 228-267 (569)
317 PF12774 AAA_6: Hydrolytic ATP 68.2 7.4 0.00016 44.4 5.2 108 53-181 11-118 (231)
318 cd03214 ABC_Iron-Siderophores_ 68.2 3.4 7.5E-05 45.2 2.5 27 73-99 23-49 (180)
319 KOG1003|consensus 68.2 9.9 0.00022 40.9 5.6 103 416-518 79-188 (205)
320 cd03262 ABC_HisP_GlnQ_permease 68.1 3.4 7.3E-05 46.5 2.5 28 73-100 24-51 (213)
321 PRK13541 cytochrome c biogenes 68.0 3.4 7.4E-05 45.8 2.5 28 73-100 24-51 (195)
322 PRK09039 hypothetical protein; 68.0 21 0.00045 43.4 9.2 66 429-494 113-178 (343)
323 cd03243 ABC_MutS_homologs The 68.0 9.7 0.00021 42.5 6.1 67 75-141 29-116 (202)
324 PLN02840 tRNA dimethylallyltra 67.9 7.7 0.00017 47.9 5.5 75 77-159 23-129 (421)
325 cd03265 ABC_DrrA DrrA is the A 67.7 3.4 7.4E-05 46.8 2.4 26 74-99 25-50 (220)
326 PRK13540 cytochrome c biogenes 67.7 3.5 7.7E-05 45.9 2.5 27 73-99 25-51 (200)
327 PRK04182 cytidylate kinase; Pr 67.7 6.2 0.00014 42.8 4.4 27 78-104 3-29 (180)
328 PLN02674 adenylate kinase 67.5 5.3 0.00012 45.8 3.9 30 74-103 30-59 (244)
329 COG1102 Cmk Cytidylate kinase 67.5 4.1 8.9E-05 42.9 2.6 27 79-105 4-30 (179)
330 KOG0745|consensus 67.4 9 0.0002 46.3 5.7 65 74-138 225-297 (564)
331 TIGR02442 Cob-chelat-sub cobal 67.3 3.4 7.4E-05 54.5 2.6 24 76-99 26-49 (633)
332 KOG0804|consensus 67.3 20 0.00042 43.5 8.4 82 440-521 348-429 (493)
333 cd03216 ABC_Carb_Monos_I This 67.3 3.6 7.9E-05 44.2 2.4 27 74-100 25-51 (163)
334 TIGR02524 dot_icm_DotB Dot/Icm 67.3 3.3 7.1E-05 50.5 2.2 27 69-95 128-154 (358)
335 TIGR00606 rad50 rad50. This fa 67.2 43 0.00093 48.5 13.7 254 237-524 538-821 (1311)
336 KOG0744|consensus 67.2 5.4 0.00012 46.4 3.7 20 77-96 179-198 (423)
337 COG2433 Uncharacterized conser 67.0 25 0.00054 44.4 9.5 74 425-498 422-498 (652)
338 PRK02496 adk adenylate kinase; 67.0 4 8.7E-05 44.8 2.7 28 77-104 3-30 (184)
339 PRK05703 flhF flagellar biosyn 66.9 12 0.00026 46.8 7.2 32 75-106 221-257 (424)
340 PF07728 AAA_5: AAA domain (dy 66.9 2.9 6.3E-05 43.4 1.5 105 1050-1160 1-136 (139)
341 cd03255 ABC_MJ0796_Lo1CDE_FtsE 66.8 3.6 7.9E-05 46.4 2.4 27 74-100 29-55 (218)
342 cd03224 ABC_TM1139_LivF_branch 66.8 3.4 7.4E-05 46.8 2.2 27 74-100 25-51 (222)
343 PRK14721 flhF flagellar biosyn 66.7 23 0.00049 44.1 9.3 24 74-97 190-214 (420)
344 cd03293 ABC_NrtD_SsuB_transpor 66.6 3.6 7.9E-05 46.6 2.4 27 74-100 29-55 (220)
345 cd03226 ABC_cobalt_CbiO_domain 66.6 3.7 8.1E-05 45.9 2.4 27 74-100 25-51 (205)
346 PRK10416 signal recognition pa 66.4 8.5 0.00018 46.2 5.5 26 75-100 114-140 (318)
347 cd03280 ABC_MutS2 MutS2 homolo 66.3 8.3 0.00018 43.0 5.1 23 74-96 25-49 (200)
348 PRK11124 artP arginine transpo 66.2 3.9 8.4E-05 47.1 2.5 26 74-99 27-52 (242)
349 PRK14528 adenylate kinase; Pro 66.2 4.3 9.3E-05 44.7 2.8 29 77-105 3-31 (186)
350 TIGR02680 conserved hypothetic 66.2 17 0.00037 52.4 9.3 59 410-468 860-918 (1353)
351 COG2019 AdkA Archaeal adenylat 66.2 4.6 9.9E-05 42.7 2.7 23 77-99 6-28 (189)
352 cd03283 ABC_MutS-like MutS-lik 66.1 9.6 0.00021 42.5 5.5 21 77-97 27-47 (199)
353 PRK04406 hypothetical protein; 66.1 32 0.00069 31.8 7.8 53 441-493 6-58 (75)
354 smart00787 Spc7 Spc7 kinetocho 66.1 25 0.00054 42.0 9.2 60 432-491 204-263 (312)
355 TIGR01166 cbiO cobalt transpor 66.1 3.8 8.2E-05 45.2 2.3 27 74-100 17-43 (190)
356 KOG0737|consensus 66.1 7.4 0.00016 46.3 4.7 65 74-140 126-193 (386)
357 TIGR03608 L_ocin_972_ABC putat 66.0 3.8 8.3E-05 45.8 2.4 27 74-100 23-49 (206)
358 KOG0989|consensus 66.0 4.6 0.0001 46.8 2.9 29 73-101 55-83 (346)
359 KOG0064|consensus 65.7 3.6 7.8E-05 50.7 2.1 26 73-98 506-531 (728)
360 PF00580 UvrD-helicase: UvrD/R 65.7 4.4 9.6E-05 48.3 3.0 30 69-98 7-37 (315)
361 TIGR00960 3a0501s02 Type II (G 65.7 3.9 8.5E-05 46.2 2.4 27 74-100 28-54 (216)
362 cd03222 ABC_RNaseL_inhibitor T 65.6 4 8.7E-05 44.6 2.3 26 74-99 24-49 (177)
363 TIGR01978 sufC FeS assembly AT 65.5 4 8.6E-05 47.0 2.4 25 74-98 25-49 (243)
364 TIGR01277 thiQ thiamine ABC tr 65.4 4 8.6E-05 46.0 2.4 28 73-100 22-49 (213)
365 cd03258 ABC_MetN_methionine_tr 65.4 4 8.6E-05 46.7 2.4 27 74-100 30-56 (233)
366 cd03261 ABC_Org_Solvent_Resist 65.4 4 8.6E-05 46.8 2.4 27 74-100 25-51 (235)
367 PF15030 DUF4527: Protein of u 65.4 11 0.00024 41.6 5.4 83 456-538 54-136 (277)
368 COG1126 GlnQ ABC-type polar am 65.4 9.1 0.0002 42.5 4.8 54 74-129 26-80 (240)
369 PRK12726 flagellar biosynthesi 65.4 9.3 0.0002 46.4 5.4 33 74-106 205-240 (407)
370 TIGR02211 LolD_lipo_ex lipopro 65.3 4.1 9E-05 46.1 2.5 28 73-100 29-56 (221)
371 PRK11248 tauB taurine transpor 65.2 4 8.7E-05 47.4 2.4 26 74-99 26-51 (255)
372 cd01120 RecA-like_NTPases RecA 65.0 15 0.00033 38.7 6.7 21 77-97 1-21 (165)
373 TIGR03864 PQQ_ABC_ATP ABC tran 64.9 4.1 9E-05 46.7 2.4 26 74-99 26-51 (236)
374 cd03268 ABC_BcrA_bacitracin_re 64.8 4.3 9.2E-05 45.5 2.4 28 73-100 24-51 (208)
375 PRK09493 glnQ glutamine ABC tr 64.8 4.1 8.9E-05 46.8 2.4 27 74-100 26-52 (240)
376 cd03266 ABC_NatA_sodium_export 64.8 4.3 9.3E-05 45.9 2.5 27 74-100 30-56 (218)
377 KOG0018|consensus 64.7 77 0.0017 42.8 13.6 242 245-527 739-1022(1141)
378 TIGR02673 FtsE cell division A 64.7 4.3 9.3E-05 45.7 2.4 26 74-99 27-52 (214)
379 PRK10584 putative ABC transpor 64.6 4.3 9.2E-05 46.3 2.4 28 73-100 34-61 (228)
380 cd03259 ABC_Carb_Solutes_like 64.6 4.3 9.4E-05 45.7 2.5 26 74-99 25-50 (213)
381 PRK13546 teichoic acids export 64.6 4.2 9.2E-05 47.5 2.4 27 73-99 48-74 (264)
382 cd03232 ABC_PDR_domain2 The pl 64.5 4.2 9E-05 45.1 2.2 26 73-98 31-56 (192)
383 cd03223 ABCD_peroxisomal_ALDP 64.5 4.6 9.9E-05 43.6 2.5 28 73-100 25-52 (166)
384 PF00406 ADK: Adenylate kinase 64.4 5 0.00011 42.4 2.8 23 80-102 1-23 (151)
385 PRK10247 putative ABC transpor 64.1 4.4 9.5E-05 46.1 2.4 26 74-99 32-57 (225)
386 cd03247 ABCC_cytochrome_bd The 64.1 4.5 9.8E-05 44.1 2.4 27 74-100 27-53 (178)
387 cd03215 ABC_Carb_Monos_II This 64.1 4.4 9.5E-05 44.4 2.3 27 74-100 25-51 (182)
388 KOG0729|consensus 64.0 9.7 0.00021 42.9 4.8 76 63-141 199-277 (435)
389 cd03257 ABC_NikE_OppD_transpor 64.0 4.3 9.4E-05 46.2 2.3 27 74-100 30-56 (228)
390 COG1124 DppF ABC-type dipeptid 64.0 4.7 0.0001 45.4 2.4 36 74-109 32-67 (252)
391 TIGR02315 ABC_phnC phosphonate 63.9 4.5 9.7E-05 46.6 2.5 27 73-99 26-52 (243)
392 PF13238 AAA_18: AAA domain; P 63.8 4.3 9.3E-05 41.2 2.0 22 78-99 1-22 (129)
393 cd03235 ABC_Metallic_Cations A 63.8 4.3 9.4E-05 45.7 2.3 26 74-99 24-49 (213)
394 TIGR01351 adk adenylate kinase 63.8 5.4 0.00012 44.9 3.0 28 78-105 2-29 (210)
395 COG4026 Uncharacterized protei 63.8 49 0.0011 36.2 9.7 32 460-491 142-173 (290)
396 PRK04220 2-phosphoglycerate ki 63.8 16 0.00035 43.1 7.0 65 29-102 55-119 (301)
397 cd03256 ABC_PhnC_transporter A 63.8 4.5 9.7E-05 46.5 2.4 26 74-99 26-51 (241)
398 PRK10771 thiQ thiamine transpo 63.7 4.4 9.5E-05 46.3 2.3 27 74-100 24-50 (232)
399 cd03230 ABC_DR_subfamily_A Thi 63.7 4.6 0.0001 43.8 2.4 28 73-100 24-51 (173)
400 cd03278 ABC_SMC_barmotin Barmo 63.7 5.1 0.00011 44.6 2.8 29 72-100 19-47 (197)
401 cd03213 ABCG_EPDR ABCG transpo 63.7 4.6 0.0001 44.8 2.4 27 73-99 33-59 (194)
402 PRK15429 formate hydrogenlyase 63.6 9.1 0.0002 51.3 5.6 56 54-109 378-436 (686)
403 KOG0740|consensus 63.5 7.1 0.00015 48.0 4.1 83 55-138 164-250 (428)
404 PRK14241 phosphate transporter 63.5 4.5 9.7E-05 47.1 2.4 26 74-99 29-54 (258)
405 cd03244 ABCC_MRP_domain2 Domai 63.5 4.8 0.0001 45.6 2.5 26 74-99 29-54 (221)
406 PRK05541 adenylylsulfate kinas 63.5 5 0.00011 43.7 2.6 24 74-97 6-29 (176)
407 TIGR02525 plasmid_TraJ plasmid 63.4 8.3 0.00018 47.2 4.7 37 71-107 145-186 (372)
408 cd03225 ABC_cobalt_CbiO_domain 63.4 4.7 0.0001 45.3 2.4 27 74-100 26-52 (211)
409 PRK07471 DNA polymerase III su 63.2 11 0.00023 46.3 5.6 24 76-99 41-66 (365)
410 PRK14526 adenylate kinase; Pro 63.2 5.4 0.00012 44.9 2.9 28 77-104 2-29 (211)
411 cd03234 ABCG_White The White s 63.2 4.5 9.8E-05 46.0 2.3 26 74-99 32-57 (226)
412 TIGR01189 ccmA heme ABC export 63.2 4.7 0.0001 44.8 2.4 26 74-99 25-50 (198)
413 PF06008 Laminin_I: Laminin Do 63.2 62 0.0014 37.8 11.8 90 407-496 158-249 (264)
414 PRK14245 phosphate ABC transpo 63.2 4.6 0.0001 46.8 2.4 27 73-99 27-53 (250)
415 TIGR02770 nickel_nikD nickel i 63.1 4.7 0.0001 46.0 2.4 27 74-100 11-37 (230)
416 cd03218 ABC_YhbG The ABC trans 63.1 4.7 0.0001 46.0 2.4 27 74-100 25-51 (232)
417 KOG0741|consensus 63.1 15 0.00034 45.4 6.6 97 73-181 536-635 (744)
418 KOG1970|consensus 63.0 6.6 0.00014 48.9 3.7 30 77-106 112-141 (634)
419 cd03228 ABCC_MRP_Like The MRP 63.0 5.1 0.00011 43.4 2.5 27 74-100 27-53 (171)
420 cd00071 GMPK Guanosine monopho 62.9 4.8 0.0001 41.9 2.2 22 78-99 2-23 (137)
421 PRK00279 adk adenylate kinase; 62.9 5.3 0.00011 45.1 2.7 29 77-105 2-30 (215)
422 PF02223 Thymidylate_kin: Thym 62.9 8.7 0.00019 42.1 4.4 46 81-126 2-47 (186)
423 KOG0250|consensus 62.8 36 0.00077 46.0 10.3 53 79-141 66-118 (1074)
424 PRK06835 DNA replication prote 62.7 14 0.00029 44.7 6.2 47 72-124 180-229 (329)
425 cd03219 ABC_Mj1267_LivG_branch 62.7 4.6 0.0001 46.2 2.3 26 74-99 25-50 (236)
426 cd03221 ABCF_EF-3 ABCF_EF-3 E 62.7 5 0.00011 42.2 2.3 27 74-100 25-51 (144)
427 PRK08939 primosomal protein Dn 62.7 13 0.00027 44.5 6.0 45 75-125 156-203 (306)
428 cd03296 ABC_CysA_sulfate_impor 62.7 4.8 0.0001 46.3 2.4 27 74-100 27-53 (239)
429 PRK10895 lipopolysaccharide AB 62.6 4.9 0.00011 46.2 2.4 27 73-99 27-53 (241)
430 PRK15177 Vi polysaccharide exp 62.6 5 0.00011 45.3 2.5 26 74-99 12-37 (213)
431 COG2884 FtsE Predicted ATPase 62.5 11 0.00023 41.0 4.6 27 73-99 25-52 (223)
432 PF07088 GvpD: GvpD gas vesicl 62.5 3.5 7.6E-05 49.2 1.2 12 1165-1176 227-238 (484)
433 PRK14261 phosphate ABC transpo 62.4 4.8 0.0001 46.7 2.4 28 73-100 30-57 (253)
434 PRK10575 iron-hydroxamate tran 62.4 4.6 0.0001 47.2 2.2 26 74-99 36-61 (265)
435 COG2804 PulE Type II secretory 62.3 4.8 0.0001 50.1 2.4 29 64-92 247-275 (500)
436 PRK06871 DNA polymerase III su 62.1 11 0.00024 45.2 5.3 114 62-179 9-155 (325)
437 TIGR02030 BchI-ChlI magnesium 62.1 5.2 0.00011 48.3 2.6 25 75-99 25-49 (337)
438 TIGR02173 cyt_kin_arch cytidyl 62.0 9.6 0.00021 41.0 4.5 27 78-104 3-29 (171)
439 PRK11701 phnK phosphonate C-P 61.9 5 0.00011 46.7 2.4 26 74-99 31-56 (258)
440 PRK14242 phosphate transporter 61.9 5 0.00011 46.5 2.4 26 74-99 31-56 (253)
441 cd03260 ABC_PstB_phosphate_tra 61.9 5.1 0.00011 45.6 2.4 26 74-99 25-50 (227)
442 TIGR03771 anch_rpt_ABC anchore 61.8 5.2 0.00011 45.4 2.5 27 74-100 5-31 (223)
443 PF10662 PduV-EutP: Ethanolami 61.8 4.5 9.8E-05 42.2 1.7 18 77-94 3-20 (143)
444 TIGR03410 urea_trans_UrtE urea 61.8 5.1 0.00011 45.7 2.4 27 74-100 25-51 (230)
445 PRK13645 cbiO cobalt transport 61.7 5 0.00011 47.6 2.4 27 74-100 36-62 (289)
446 PRK14274 phosphate ABC transpo 61.7 5.1 0.00011 46.7 2.4 26 74-99 37-62 (259)
447 PRK11247 ssuB aliphatic sulfon 61.7 5.1 0.00011 46.6 2.4 27 74-100 37-63 (257)
448 PF12325 TMF_TATA_bd: TATA ele 61.7 69 0.0015 32.5 9.9 90 427-516 18-110 (120)
449 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 61.7 5.2 0.00011 45.5 2.4 27 74-100 47-73 (224)
450 PRK14269 phosphate ABC transpo 61.6 5.2 0.00011 46.2 2.4 27 73-99 26-52 (246)
451 cd02023 UMPK Uridine monophosp 61.5 15 0.00033 40.7 6.1 22 78-99 2-23 (198)
452 PF05278 PEARLI-4: Arabidopsis 61.5 41 0.0009 38.6 9.3 61 431-491 199-259 (269)
453 PRK14250 phosphate ABC transpo 61.5 5.2 0.00011 46.1 2.4 26 74-99 28-53 (241)
454 PF08317 Spc7: Spc7 kinetochor 61.5 29 0.00062 42.0 8.7 58 429-486 213-270 (325)
455 smart00763 AAA_PrkA PrkA AAA d 61.5 9.2 0.0002 46.2 4.4 32 76-107 79-117 (361)
456 cd03267 ABC_NatA_like Similar 61.5 5.2 0.00011 45.9 2.4 27 74-100 46-72 (236)
457 cd03233 ABC_PDR_domain1 The pl 61.4 5 0.00011 44.8 2.2 26 74-99 32-57 (202)
458 cd03249 ABC_MTABC3_MDL1_MDL2 M 61.4 5.6 0.00012 45.6 2.6 26 74-99 28-53 (238)
459 cd03298 ABC_ThiQ_thiamine_tran 61.3 5.4 0.00012 44.8 2.5 27 74-100 23-49 (211)
460 COG4525 TauB ABC-type taurine 61.2 5.7 0.00012 43.1 2.4 28 74-101 30-57 (259)
461 PF00261 Tropomyosin: Tropomyo 61.2 26 0.00057 40.2 8.0 19 456-474 172-190 (237)
462 cd03252 ABCC_Hemolysin The ABC 61.2 5.3 0.00012 45.8 2.4 26 74-99 27-52 (237)
463 TIGR01425 SRP54_euk signal rec 61.1 6.3 0.00014 48.9 3.1 52 55-106 77-134 (429)
464 TIGR03574 selen_PSTK L-seryl-t 61.0 11 0.00024 43.6 5.0 29 78-106 2-33 (249)
465 PRK13538 cytochrome c biogenes 61.0 5.5 0.00012 44.5 2.5 27 74-100 26-52 (204)
466 PRK14244 phosphate ABC transpo 61.0 5.4 0.00012 46.2 2.4 26 74-99 30-55 (251)
467 PF00910 RNA_helicase: RNA hel 61.0 6 0.00013 39.2 2.4 21 79-99 2-23 (107)
468 PRK09544 znuC high-affinity zi 61.0 5.5 0.00012 46.2 2.5 27 73-99 28-54 (251)
469 cd03238 ABC_UvrA The excision 60.9 5.4 0.00012 43.5 2.3 23 74-96 20-42 (176)
470 PRK13894 conjugal transfer ATP 60.9 14 0.00031 44.3 5.9 67 74-141 147-227 (319)
471 PF08477 Miro: Miro-like prote 60.9 4.7 0.0001 40.3 1.7 20 77-96 1-20 (119)
472 cd03245 ABCC_bacteriocin_expor 60.8 5.6 0.00012 45.0 2.5 27 73-99 28-54 (220)
473 TIGR02323 CP_lyasePhnK phospho 60.8 5.3 0.00012 46.3 2.4 27 74-100 28-54 (253)
474 cd03248 ABCC_TAP TAP, the Tran 60.8 5.5 0.00012 45.3 2.4 27 74-100 39-65 (226)
475 PRK13632 cbiO cobalt transport 60.8 5.5 0.00012 46.8 2.5 27 74-100 34-60 (271)
476 PRK13543 cytochrome c biogenes 60.7 5.6 0.00012 44.9 2.4 27 74-100 36-62 (214)
477 TIGR00064 ftsY signal recognit 60.7 13 0.00027 43.7 5.4 53 75-129 72-127 (272)
478 PRK11831 putative ABC transpor 60.6 5.4 0.00012 46.8 2.3 27 74-100 32-58 (269)
479 PRK10744 pstB phosphate transp 60.6 5.5 0.00012 46.5 2.4 26 74-99 38-63 (260)
480 PRK04132 replication factor C 60.5 5 0.00011 53.8 2.3 107 71-180 560-679 (846)
481 PRK13539 cytochrome c biogenes 60.5 5.7 0.00012 44.6 2.4 27 74-100 27-53 (207)
482 PRK14240 phosphate transporter 60.4 5.5 0.00012 46.1 2.4 26 74-99 28-53 (250)
483 TIGR02688 conserved hypothetic 60.3 10 0.00022 46.7 4.5 73 60-144 195-271 (449)
484 cd03246 ABCC_Protease_Secretio 60.3 6.1 0.00013 42.9 2.5 27 74-100 27-53 (173)
485 PRK15056 manganese/iron transp 60.3 5.6 0.00012 46.7 2.4 27 74-100 32-58 (272)
486 PRK13648 cbiO cobalt transport 60.2 5.6 0.00012 46.7 2.4 27 74-100 34-60 (269)
487 KOG1808|consensus 60.2 11 0.00024 54.0 5.4 98 1045-1147 437-561 (1856)
488 KOG2264|consensus 60.2 35 0.00076 42.1 8.8 66 427-492 81-146 (907)
489 PRK06696 uridine kinase; Valid 60.1 7.5 0.00016 44.2 3.4 25 81-105 28-55 (223)
490 PRK11264 putative amino-acid A 60.0 5.7 0.00012 46.0 2.4 26 74-99 28-53 (250)
491 PRK14239 phosphate transporter 60.0 5.6 0.00012 46.1 2.3 25 74-98 30-54 (252)
492 PF10481 CENP-F_N: Cenp-F N-te 60.0 40 0.00087 38.3 8.6 59 481-541 95-156 (307)
493 PRK10908 cell division protein 60.0 5.9 0.00013 44.9 2.5 26 74-99 27-52 (222)
494 PRK14267 phosphate ABC transpo 60.0 5.8 0.00013 46.0 2.5 26 74-99 29-54 (253)
495 TIGR02782 TrbB_P P-type conjug 59.9 8.9 0.00019 45.7 4.0 25 74-98 131-156 (299)
496 PRK14249 phosphate ABC transpo 59.8 5.9 0.00013 45.9 2.5 28 73-100 28-55 (251)
497 TIGR03005 ectoine_ehuA ectoine 59.8 5.7 0.00012 46.1 2.3 26 74-99 25-50 (252)
498 PF10205 KLRAQ: Predicted coil 59.8 20 0.00044 34.8 5.5 71 419-489 6-76 (102)
499 TIGR01184 ntrCD nitrate transp 59.8 5.8 0.00013 45.3 2.4 23 74-96 10-32 (230)
500 PRK14235 phosphate transporter 59.8 5.9 0.00013 46.4 2.5 24 73-96 43-66 (267)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=3.3e-132 Score=1303.66 Aligned_cols=691 Identities=42% Similarity=0.828 Sum_probs=521.6
Q ss_pred CcccccccccccccccccchhhhhccchhhHHHHHHHHhhhhcCCCCcCCCchhhc-cchHHHHHHHhhhcCCCchhHHH
Q psy2649 940 SPVDFLTNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQEWK-NKSALQRLCIMRCLRPDRMTYAV 1018 (1637)
Q Consensus 940 ~~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~lp~~~~-~l~~fqklll~r~lrpdrl~~~~ 1018 (1637)
+.++|++++.|.+++.|+.+|.|.+|.++|..+.++|++|+++..||..++|..|. ++++|||+||+||+||||+..++
T Consensus 7 p~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~~~~pe~~~~P~~~~~~l~~fqklllir~lRpDrl~~~~ 86 (707)
T PF03028_consen 7 PIPSWLSDEQWQNICALSKLPSFKGLCESIESNPEEWKQWFESDSPEEEPLPSPWEENLTPFQKLLLIRALRPDRLIAAM 86 (707)
T ss_dssp GTTTS-HHHHHHHHHHHHC-GGGSSHHHHHHHTHHHHHHHC-SS-SS-----HHHHHHHHHHHHHHHHHHH-CCCHHHHH
T ss_pred CCcCcCCHHHHHHHHHHhCCcchHHHHHHHHhCHHHHHHHHcCCCcccccCChhhhhcccHHHHHHHHHHhCccHhHHHH
Confidence 34699999999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHHhhcCccccccccchhhhhhccCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCchhHHHHhHH
Q psy2649 1019 RSFVEEKMGDRYVNARAIEFEQSYRESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETI 1098 (1637)
Q Consensus 1019 ~~~v~~~lg~~~~~~~~~~l~~~~~~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~~~a~~~l 1098 (1637)
++||..+||..|.+++++|++.+|++|++++|+||+++||+||+..|.++|+++++ +++++++||||+||+..|+++|
T Consensus 87 ~~~v~~~lg~~~~~~~~~~l~~~~~~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~--~~~~~~~islG~~~~~~a~~~l 164 (707)
T PF03028_consen 87 RKFVSSVLGSRFVEPPPFDLESIYEESSPTTPILFILSPGSDPSSEIEQLAKKKGF--GNKKLQSISLGSGQGPEAEKAL 164 (707)
T ss_dssp HHHHHHHH-TTTTS-----HHHHHHCTTTTC-EEEEE-TT--THHHHHHHHHCTT-------EEEEETTSHHHHHHHHHH
T ss_pred HHHHHHHcCchhhcCCCCCHHHHHHhcCCCCceEEEeCCCCChHHHHHHHHHHHhh--hhhheeecCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999873 2368999999999999999999
Q ss_pred HhhhccCCEEEEehhhhHHhhhhcHHHHHHhhhcCCCCceeEEEecCCCCCCCccccccccccccccccCCCCchhhhhH
Q psy2649 1099 QIASTKGHWAILQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNEPPTGMQANL 1178 (1637)
Q Consensus 1099 ~~a~~~G~WvlL~N~HL~~~wl~~Le~~l~~~~~~~h~~FRLwLts~~~~~~~~~~fP~~lLq~s~kv~~E~p~glk~~l 1178 (1637)
++|+++|+||+||||||+++||+.|+++++.+..+.|++|||||||++++. ||++||++|+||+||+|+|+|+||
T Consensus 165 ~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~~~h~~FRL~lt~~~~~~-----~P~~lL~~s~kv~~E~p~gik~~l 239 (707)
T PF03028_consen 165 KEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSPEIHPNFRLFLTSEPSPS-----FPISLLQSSIKVTYEPPPGIKANL 239 (707)
T ss_dssp HHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SSTTSTT-EEEEEEESSTT-----S-HHHHHCSEEEEE---SSHHHHH
T ss_pred HHHhcCCeEEEcccchhHHHHHHHHHHHHhccccccccceEEEEEecCccc-----CCHHHHHcccceeeCChhHHHHHH
Confidence 999999999999999999999999999998876567999999999999985 999999999999999999999999
Q ss_pred HHHhhcCChhHHhhhhhhhhhHHHHHHHHHHHHhhhhhhccCCCCCCCcccccCCcceEeehhhHHHhhhc--CCCCcch
Q psy2649 1179 HKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEAN--NNVPWED 1256 (1637)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~plGw~~~Y~f~~~Dl~~~~~~l~~~l~~~--~~ipw~a 1256 (1637)
.++|.++.++.+..+.++.++++++|+||||||||+||++|||+|||++||||++||.++++++..+++.. +.+||++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ipw~~ 319 (707)
T PF03028_consen 240 LRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIPWDA 319 (707)
T ss_dssp HHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTTHHH
T ss_pred HHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCcHHH
Confidence 99999988878888888889999999999999999999999999999999999999999999999999987 7999999
Q ss_pred hhHHHhhhccCCCCCChhhhHHHHHHHHHhcCcccccccccccC---CCCCCCCCCccccccccccCCCCCCCcccccCC
Q psy2649 1257 LRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAP---GFPAPPNQDYQGYHTYIDESLPPESPILYGLHP 1333 (1637)
Q Consensus 1257 l~~li~ei~YGGrv~d~~Drr~L~~~l~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~i~~l~~~~~p~~~gl~~ 1333 (1637)
|+|++|+++|||||+|+||||+|++|+++||+++++++++.+.+ ++.+|...++++|.+||+++|..++|++||||+
T Consensus 320 l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~~i~~lp~~~~p~~~GL~~ 399 (707)
T PF03028_consen 320 LRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPDSGSYSIPDSNSLEDYIEWIEQLPDEDPPEWFGLPP 399 (707)
T ss_dssp HHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-TTTEE----SSHHHHHHHHCTS-SS--CCCCTS-T
T ss_pred HHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccCCCCccCCccccHHHHHHHHHhCCCCCCccccCCCc
Confidence 99999999999999999999999999999999999999988876 678899899999999999988889999999999
Q ss_pred CccccchhhhhHHHHHHHHhcccCCccCCCCCCcchHHHHHHHHHHHHHhCCCCCcHhhhhhcc---ccCCceEEEeehh
Q psy2649 1334 NAEIGFLTTQAENVFKIIFELQPRDTAAAQGSGVTREEKVRQVLDEILDKCPDAFNIKDMMGRV---EDRTPYIIVAFQE 1410 (1637)
Q Consensus 1334 na~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~---~~~~p~~~~l~qE 1410 (1637)
||++.+...+++.++++++.+++.....+.+++.+.++.+.+.+.++++++|..++......+. ...+|+..|+.||
T Consensus 400 na~~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~~~~~~~~~~~~~~~~~Pl~~fl~qE 479 (707)
T PF03028_consen 400 NAEISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLFPIEEVKSKRPAENSNDPLNRFLEQE 479 (707)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-----------------------------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccCCHHHHhccCCccccCCceeeeeHHH
Confidence 9999999999999999999999987665434445567788889999999999988876655543 2468999999999
Q ss_pred hhhhHhHHHHHHhhhhhhccccccceeecccHHHHhhcccccCCCchhhhcccccccchhHHHHHHHHHHHHHhhhhccC
Q psy2649 1411 CERMNILMSEIKRSLKELNLGLKGELTITTDMEALEYSIFMDTVPPSWEKRAYPSMLGLGGWFADLMLRLKELENWVGDF 1490 (1637)
Q Consensus 1411 ~~~~n~Ll~~I~~sL~~l~~~l~G~~~~s~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~R~~~l~~w~~~~ 1490 (1637)
++++|+|++.|+++|++|.++++|.+.||+++++++++|..|+||..|.+++||+++++.+|++||.+|++|+.+|....
T Consensus 480 ~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~Rv~~l~~w~~~~ 559 (707)
T PF03028_consen 480 IERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPSPKPLSSWLQDLIKRVEQLQRWASNS 559 (707)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---SS--HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCchhhcccccCchhHHHHHHHHhhhhcCCCccccccccccccccccccCCCCCCCccccccccccccccccccccccc
Q psy2649 1491 QLPSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCLQCDVTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDA 1570 (1637)
Q Consensus 1491 ~~p~~~wL~~~f~P~aFLtA~~Q~~ar~~~~~ld~L~~~~~v~~~~~~~~~~~~~~g~~I~GL~L~Ga~wd~~~~~L~e~ 1570 (1637)
+.|..|||||||||+|||||+||++||++++|+|+|.|.++|.....+....+|++|+||+||+|+||+||...+++.++
T Consensus 560 ~~p~~~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~~~~~~~~~~~~~~g~~I~GL~leGA~wd~~~~~l~~~ 639 (707)
T PF03028_consen 560 GQPKSFWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVTSSEDENIRSPPEDGVYIHGLFLEGARWDGQKGCLEES 639 (707)
T ss_dssp -----B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE--------------EEEEE-SEEEESSEEET-TCEE--S
T ss_pred CCceEEecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEEeccccccccccccceEEEeEEecccEeccccCcccCC
Confidence 67999999999999999999999999999999999999999998765555557899999999999999999999999999
Q ss_pred cccccCCCCcEEEEEeeccchhhccccccCccccccccCC-cEEEEEecccCCCCcchhhhhhhhccC
Q psy2649 1571 KLKELFPMMPVIYIKAITQDKQDLRNMYECPVYKTRQRGP-NYVWTFNLKTKEKPAKWTMAGVALLFM 1637 (1637)
Q Consensus 1571 ~~~~~~~~lP~i~~~~~~~~~~~~~~~y~cPvY~~~~R~~-n~i~~~~l~~~~~~~~wi~rGvAl~~~ 1637 (1637)
.++.++++||++|++|+..........|.||||+|+.|++ |||++++|||+.++++||+|||||+||
T Consensus 640 ~~~~~~~~~pv~~~~~~~~~~~~~~~~y~~PvY~~~~R~~~~~v~~l~l~~~~~~~~Wi~rGvAl~lq 707 (707)
T PF03028_consen 640 SPKSLYPPMPVIWLKPVQASPQSSDNSYECPVYKTSSREGLNFVFSLPLPTDEDPDHWILRGVALLLQ 707 (707)
T ss_dssp SSEEEES-EEEE-EE-----TTCGGCSEEEEEESSTT--S--EEEEEEE-B-T-HHHHHTTT-EEES-
T ss_pred CcccccccCceeEeccccccccCCCCEEECCceecCcCCCCeEEEEEEcCCCCCHHHHHHHhHHHhcC
Confidence 9999999999999999876555667899999999999985 899999999999999999999999998
No 2
>KOG3595|consensus
Probab=100.00 E-value=6.2e-110 Score=1137.45 Aligned_cols=838 Identities=41% Similarity=0.653 Sum_probs=771.7
Q ss_pred ccCCceeeecccCCCCCccccCCChHHHHHHHHHHHHhHH-HHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecC
Q psy2649 7 MDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYN-EIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGG 85 (1637)
Q Consensus 7 ~~~~~~f~~f~~~~~~~~Y~~v~~~~~l~~~l~~~l~~yn-~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~G 85 (1637)
.+.|++||+|.+... +.|+++.+++.++..+...+..|| .....|++|+|.+++.|++||+|++++|+||++|+|++|
T Consensus 397 ~~~~~~~~~~~~~~~-~~y~~~~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g 475 (1395)
T KOG3595|consen 397 LQMPLLYGDFRSESH-KIYEEVLSVELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGG 475 (1395)
T ss_pred hcCCceeeecccccc-cccCchHhHHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCC
Confidence 467999999998765 789999999999999999999999 556799999999999999999999999999999999999
Q ss_pred CchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCCCC
Q psy2649 86 SGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDL 165 (1637)
Q Consensus 86 sGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp~L 165 (1637)
+||+|++|+++|++++.+|++.++++|+..+|++|||.+++.||.+|+++||+++|+++.+++|||+||+||++||+|+|
T Consensus 476 ~gkqsl~r~~~~~~~~~~fq~~~~~~y~~~~~~~dl~~~~r~~g~~~~~~~f~~~~~~i~~e~fle~ln~ll~~gevp~l 555 (1395)
T KOG3595|consen 476 SGKQSLTRLAAFINGLSVFQIEITRSYNIEDFREDLKAILRKAGLKNKETVFILTDSQIKDESFLEDLNNLLASGEVPNL 555 (1395)
T ss_pred CCcccHHHHHHhhccccceeeeccccCcHHHHHHHHHHHHHHhccCCCceEEeechHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhhcCCCccccCCCCccccc-chhhHHHHhhccC---C-CccccccCcceeEecccccccccC------
Q psy2649 166 FTDDEIENIVNNIAAEPEIPLTADLDPLTML-TDDATIAFWNNEG---L-PNDRMSTENATILVNSQRWPLMID------ 234 (1637)
Q Consensus 166 f~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~-s~~~~~~~f~~~v---L-~v~~~s~~~~~~~~~~~~~P~l~~------ 234 (1637)
|.+||++.++..+........ .... +.+.++.||+.++ | ++++++|.|..++.+.+.||+++|
T Consensus 556 f~~de~~~~~~~~~~~~~~~~------~~~~~s~e~~~~~f~~~~~~~l~~vl~~~~~g~~~~~r~~~~pal~~~~~i~w 629 (1395)
T KOG3595|consen 556 FTGDELDEIKMELAGEMGEEA------KLILDSRENLYLFFIFRVRRNLHVVLSVSPVGDAFRLRARKFPALVNRCTIDW 629 (1395)
T ss_pred cchHHHHHHHHHHHHHhhhhc------cccCccHHHHHHHHHHHHHHhcceeEEeCchhhHHHHHHHhChhhhccchhhh
Confidence 999999997766665443310 1122 7899999999998 6 999999999999999999999999
Q ss_pred ----hhhhh-------------------hchHHHHHHHHhhhHhhhhHHHhhccccccCCCchhHHHHHHHHHHHHhhhh
Q psy2649 235 ----PQEVL-------------------RKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKF 291 (1637)
Q Consensus 235 ----p~~al-------------------~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~TP~~fl~~l~~f~~l~~~k~ 291 (1637)
|.+++ +..+...+..+|.++.+.+..|+...+|++|+||++|++|+++|..++.+|+
T Consensus 630 ~~~w~~~al~~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~tp~~~l~~i~~f~~ll~~k~ 709 (1395)
T KOG3595|consen 630 FDSWPTEALLSVAEEFLASQDILSPSEKRGAISLTMILFHETVLESFASYFDRLSRHNYVTPTSYLEFIGTFKKLLKEKR 709 (1395)
T ss_pred cccCCHHHHHHHHHHHHhhhcCCCcccccchhhhhhhhhhhhHHHHhHHHHHhcCceeecCchhHHHHHHHHHHHHHHHH
Confidence 44441 3556677778999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhHHHhhhchhh----------------------------------------------hhhHHHhHHhh
Q psy2649 292 DDNKSGITRFQNGLQKLVSLGNE----------------------------------------------EKKVRAIEEDV 325 (1637)
Q Consensus 292 ~~l~~~~~~l~~gL~kL~e~~~e----------------------------------------------e~k~~~~~~e~ 325 (1637)
+++..+..|+..||+||.++.++ +++.++....+
T Consensus 710 ~~~~~~~~r~~~gl~kl~~a~~~v~~l~~~l~~~~~el~~~~~~a~~~l~~i~~~~~~~e~~k~~v~~~e~~~~~~~~~~ 789 (1395)
T KOG3595|consen 710 SEVRLRKLRLELGLDKLKEAGEQVAGLQKELAALQPELQVKSKEANDVLAKILKETQAAEAQKEAVLEDEKKAQEKAGLI 789 (1395)
T ss_pred HHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988110 00111122345
Q ss_pred hhhhhhhHHhhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchh-------
Q psy2649 326 SYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGS------- 398 (1637)
Q Consensus 326 ~~~~~~~~~~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~------- 398 (1637)
.++++.|++++++|+|++++|.+|+++|+|.|+.|+|+|.+||.+|+.+|||||+|+|.+ ..++|..+
T Consensus 790 ~~~k~~v~~~l~~a~P~leeA~aal~ti~k~~l~~lks~~~PP~~Vk~~meavciLlg~~-----~~~~w~~~~~~~~~~ 864 (1395)
T KOG3595|consen 790 QAQKAEVEEDLEEAEPALEEASAALSTIKKADLSELKSMKNPPHAVKLVMEAVCILLGRL-----SSTDWKNISKLLLSD 864 (1395)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhcCChhhHHHHHhcCCCcHHHHHHHHHHHHHhccc-----cCCChHHHHHHhhcc
Confidence 567889999999999999999999999999999999999999999999999999999941 23344433
Q ss_pred ------------------------------------hhccccCCcCcchhhhhhheeeeEEEEecchhHHHHHHHHHHHH
Q psy2649 399 ------------------------------------QLKALKAPPQGLCAWVINIITFYNVWTFVEPKRKALAAANAELA 442 (1637)
Q Consensus 399 ------------------------------------k~~~i~~~a~~L~~WV~Ai~~Y~~v~~~v~P~~~~l~~~e~~l~ 442 (1637)
+++.+|.+|++||.||.|+..|+++++.|+|++++++.++.+..
T Consensus 865 ~~fl~~l~~~~~~~i~~~~~k~i~~~~~~~p~f~~~~v~~~s~a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~ 944 (1395)
T KOG3595|consen 865 DFFLIILREFDKDEIPEEIMKLIKKFYFQNPDFVPEKVNRASLACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELK 944 (1395)
T ss_pred cHHHHHhhcCccccChHHHHHHHHHhhcCCccCCHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 23444456889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccccCC
Q psy2649 443 AASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLP 522 (1637)
Q Consensus 443 ~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~l~ 522 (1637)
.+++.+++..+++++++++++.++++|++...+++.++.++..++.|+.||.+|+.+|++|+.||.+....+..+...++
T Consensus 945 ~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~ 1024 (1395)
T KOG3595|consen 945 AAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWSETSEQFSKQYSRLV 1024 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeehhhhhhhcchhhhHHHHhhhccccccccccCC--------------CcccccCCccccCcc----ccceeeccc
Q psy2649 523 GDILLVTAFVSYVGCFTRSYRLDLLNKFWLPTIKKSKI--------------DWFHEWPQEALESVS----LKFLVKSCE 584 (1637)
Q Consensus 523 gd~lL~aa~i~Y~G~~~~~~R~~ll~~~w~~~l~~~~i--------------d~~~~w~~~gLp~d~----n~~i~~~~~ 584 (1637)
||++++|++++|+|+++..+|+.++. .|...+....+ +++..|...|+|.|. |++++.++.
T Consensus 1025 gd~ll~~~~~~y~g~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~w~~~~lp~~~~s~en~~i~~~~~ 1103 (1395)
T KOG3595|consen 1025 GDVLLSSAFVAYLGAFDQLYRQSLLR-LWESLCTQLKIVLSNFSLISMLVDPTEILNWNIRGLPADDLSIENGIIITNSN 1103 (1395)
T ss_pred HHHHhhhhhhhhccccCHHHHHHHHH-HhHHhcCcccccccccchHhhcCchHhhcchhhccCcccccchhHHHHHhccC
Confidence 99999999999999999999999999 69877766554 267889999999988 777666654
Q ss_pred ----------------cccc-CCceEEEEecccchhHHHHHHHhcCcEEEEecccccccchhhhhhhhhhhcCc--ceeE
Q psy2649 585 ----------------SHRY-GNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVLDNLIGRNLIRKG--KVVK 645 (1637)
Q Consensus 585 ----------------~~~~-~~~l~v~~~~~~~~~~~le~ai~~G~~lli~dv~e~~dp~L~~ll~~~~~~~g--~~I~ 645 (1637)
++.+ .+++.++++++..|++.+|+|+++|.+++++|+.+.+||.+.|++.+.+.+.| ..++
T Consensus 1104 ~~~l~id~q~q~~~~i~~~~~~~~~~~i~~~~~~~l~~le~a~~~g~~il~~~~~e~~d~~l~~ll~~~~~~~g~~~~~~ 1183 (1395)
T KOG3595|consen 1104 RWPLIIDPQGQANEWIKNKESENKLQVISFNEKEFLRQLENALRFGEPVLIEDVNEELDPALEPLLLKETFKQGGRVLIK 1183 (1395)
T ss_pred CCceeecchhhhhHhHhhhhhhcccceeeccchhHHHHHHhHhccCCceeccchhhhhchhhhhhcccceeeccCeEeee
Confidence 2222 47899999999999999999999999999999999999999999999998887 4899
Q ss_pred ecccccccCCCceeeeeecccCCCCCccccccceEEEEEecccchhHHHHHHHhhhcCCCHHHHhhhhhccccceeeeec
Q psy2649 646 IGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKFERPDLELLKANLTKEQNLFKITLK 725 (1637)
Q Consensus 646 ig~~~i~~~p~F~L~l~T~~~~~~~~p~~~~~~~vInftvt~~~Le~qlL~~vv~~e~PeLe~~~~~l~~~~~~~~~~l~ 725 (1637)
+|++.++++++|++|++|+.+||||.|++.++++++||++|..++++|+|+.++..|+|+++++|..++....+.+.+++
T Consensus 1184 ~gd~~~~~~~~f~~~~~t~~~~~~~~p~~~~~~~~v~f~~t~~~l~~qll~~v~~~e~~~~~~~~~~l~~~~~~~~~~lk 1263 (1395)
T KOG3595|consen 1184 LGDKEIDLNPDFRLYITTKLRNPHYLPELSARVTLVNFTVTPSGLEDQLLGSVVAIERPDLEEERSDLIKLQAEIKRQLK 1263 (1395)
T ss_pred cCceeeecCCCeeEEEeecccCcccChhhhhceeEEEeEechhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhccCCCccchhHHHhhhhhhhhhHHHHHHHhhhcchhHHHHHHHHhhcchhhhhhhHHHHhhhcccccCc
Q psy2649 726 GLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIEIKVKEGKKTAKKIDEAREQYRPAAERASVIYFIMNELFKINP 805 (1637)
Q Consensus 726 ~lE~~lL~~L~~s~g~iLed~~li~~L~~~K~~~~~i~~~l~e~~~~~~~i~~~r~~Y~pvA~~~a~ly~~l~~l~~l~~ 805 (1637)
++|+.+|+.|+.++|++++|++++++|+.+|.++. ++.++.+++.++.+|++.|+.|+|+|.|++.+||.+++|+.++|
T Consensus 1264 ~le~~lL~~l~~s~~~~l~~~~~~~~l~~~K~~~~-i~~k~~e~~~~e~~i~~~r~~y~p~a~~~~~l~~~~~~l~~i~~ 1342 (1395)
T KOG3595|consen 1264 ELEDRLLERLSSSEGNILEDDELIVTLESSKVEAA-IKEKLEEAEETEKEIDAAREQYRPLAIHSSILYFSISDLANIHP 1342 (1395)
T ss_pred HHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHhHhhhheehhhccccCh
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhhhcccccchHHHHhhhhhceeeeeeeeecccccccchhh
Q psy2649 806 IYQFSLKAFTVVFHNAMTKAKKSDNLKGRVANLVESITFMTFQYTSRGLFERDKLI 861 (1637)
Q Consensus 806 mYqfSl~~f~~lf~~~l~~~~~~~~~~~r~~~L~~~lt~~~y~~v~r~Lf~~d~l~ 861 (1637)
|||||+.||+.+|..++.. .++..+|+..|+.++|..+|.++|||||++||++
T Consensus 1343 myq~sl~~f~~~f~~~~~~---~~~~~~r~~~l~~~~~~~v~~~~~r~l~e~dkl~ 1395 (1395)
T KOG3595|consen 1343 MYQYSLKWFLNLFHVVIER---SESLSKRLANLIDSLTYSVYCNVSRGLFEKDKLL 1395 (1395)
T ss_pred HHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHhHHHHHHHHHHHhhhhcccC
Confidence 9999999999999999998 7788999999999999999999999999999974
No 3
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.8e-95 Score=883.62 Aligned_cols=1201 Identities=16% Similarity=0.130 Sum_probs=908.9
Q ss_pred CccccccCCceeeecccCCCCCccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEE
Q psy2649 2 PENEYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLV 81 (1637)
Q Consensus 2 ~~~~~~~~~~~f~~f~~~~~~~~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLv 81 (1637)
+...+....|+|++.+.. ...++ +..+++.++++....|+.++....+|++++++.|+.|++|+|.+.|||++|.
T Consensus 1768 ~~g~i~e~~I~fS~Il~~----g~~~l-~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~ 1842 (3164)
T COG5245 1768 IAGHIGEAEITFSMILFF----GMACL-LKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLK 1842 (3164)
T ss_pred hhcccchhhhhHHHHHhc----cHHHH-hhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhh
Confidence 344556777888877753 23455 6799999999999999999999999999999999999999999999999999
Q ss_pred eecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCC
Q psy2649 82 GVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGE 161 (1637)
Q Consensus 82 G~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~ge 161 (1637)
|+.|.|++-++++|||+|+..+++|..+++|...||++-||.+..+||+.|-+.|+++.|+.+.+++|||++|+||++.+
T Consensus 1843 g~~~~g~~~~~efvcwlN~~~m~e~~~hr~~~~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~es~fLe~~N~LL~n~~ 1922 (3164)
T COG5245 1843 GVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDSLKVQDLRRNIHGGRECLFIFESIPVESSFLEDFNPLLDNNR 1922 (3164)
T ss_pred hhhhhhhHHHHHHHHHhCccchhhhhcccccchhhHHHHHHHHHHhccccCCceEEEEecCCccchHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhhhcCCCccccCCCCccccc--chhhHHHHhhccC---C-CccccccCcceeEecccccccccC-
Q psy2649 162 VPDLFTDDEIENIVNNIAAEPEIPLTADLDPLTML--TDDATIAFWNNEG---L-PNDRMSTENATILVNSQRWPLMID- 234 (1637)
Q Consensus 162 vp~Lf~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~--s~~~~~~~f~~~v---L-~v~~~s~~~~~~~~~~~~~P~l~~- 234 (1637)
||+||+++|++.|.+.+|..... .++. |++.++++|+..+ | +|++.....+.-......+|++.|
T Consensus 1923 ~~~lf~gne~~~I~~nlr~~~es--------~~L~~dTe~tlt~vFl~~~~~Nl~vVFs~c~s~d~~~~a~i~spal~nr 1994 (3164)
T COG5245 1923 FLCLFSGNERIRIPENLRFVFES--------TSLEKDTEATLTRVFLVYMEENLPVVFSACCSQDTSVLAGIRSPALKNR 1994 (3164)
T ss_pred cchhccchhHHHHHHHHHhhhhc--------cccccCCHHHHHHHHHHHHHhcCCeEEEEecCCCchHhhccCCHHHhhh
Confidence 99999999999999999976543 3333 8899999999887 7 777765444433333457899988
Q ss_pred --h--------hh----h---h------------------------hchHHHHHHHHhhhHhhhhHHHhhccccccCCCc
Q psy2649 235 --P--------QE----V---L------------------------RKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTP 273 (1637)
Q Consensus 235 --p--------~~----a---l------------------------~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~TP 273 (1637)
+ .+ | + .+..+...+.+|... -|....-...|-+|
T Consensus 1995 c~id~~~~wdt~~msq~An~V~~~s~~~~~v~~in~el~~~kg~~i~~~~~~~~vv~~~r~-----f~~~m~~Gs~~~s~ 2069 (3164)
T COG5245 1995 CFIDFKKLWDTEEMSQYANSVETLSRDGGRVFFINGELGVGKGALISEVFGDDAVVIEGRG-----FEISMIEGSLGESK 2069 (3164)
T ss_pred hhhhhhhhccHHHHHHHHhhhhheeecCCcccccccccccCcchhhHHHHhhhheeecccc-----eEEEeeeccCccCc
Confidence 1 01 0 0 000111111122211 11122233568899
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHhhhch------------------------------------hhh-h
Q psy2649 274 KSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLG------------------------------------NEE-K 316 (1637)
Q Consensus 274 ~~fl~~l~~f~~l~~~k~~~l~~~~~~l~~gL~kL~e~~------------------------------------~ee-~ 316 (1637)
-+|++++++|..++..+.++++....++.+|+.|++|.. +.| +
T Consensus 2070 ~~fI~gl~~~~~~~~~~~~~l~~~~~~l~~g~~K~nE~~~g~~elke~Ls~~~~il~~keK~a~d~L~~~~~er~e~E~K 2149 (3164)
T COG5245 2070 IKFIGGLKVYDARCVIYIEELDCTNVNLVEGVRKYNEYGRGMGELKEQLSNTVVILGVKEKNADDALSGTPGERLEREVK 2149 (3164)
T ss_pred ceeecchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHhcceeeeeecccccchhhhcChhhHHHHHHH
Confidence 999999999999999999999999999999999999870 001 1
Q ss_pred hH---------HHhHHhhhhhhhhhHHhhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCC
Q psy2649 317 KV---------RAIEEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKG 387 (1637)
Q Consensus 317 k~---------~~~~~e~~~~~~~~~~~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~ 387 (1637)
++ ..+++++.+++..+.+..+.++|++-+|+..|.+|+|.+|.|||||.+||.+|+.+||+||-|||..
T Consensus 2150 ~v~~e~~~~~l~~~ee~vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~-- 2227 (3164)
T COG5245 2150 SVFVEAPRDMLFLLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFE-- 2227 (3164)
T ss_pred HHHHHhHHHHHHHhHHHHHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcch--
Confidence 11 1235667888889999999999999999999999999999999999999999999999999999973
Q ss_pred CCCCcCccchhh-------------------------------------------hccccCCcCcchhhhhhheeeeEEE
Q psy2649 388 KVPKDLGWKGSQ-------------------------------------------LKALKAPPQGLCAWVINIITFYNVW 424 (1637)
Q Consensus 388 ~~~~~~~W~~~k-------------------------------------------~~~i~~~a~~L~~WV~Ai~~Y~~v~ 424 (1637)
-..|...+ +.+.++||+||.+||.+++.|++|+
T Consensus 2228 ----a~~w~~~qQ~LrrDDfi~~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvL 2303 (3164)
T COG5245 2228 ----AKIWFGEQQSLRRDDFIRIIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVL 2303 (3164)
T ss_pred ----hHHhhhHHHHhhhhhHHHHhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhh
Confidence 23344332 4444566888999999999999999
Q ss_pred EecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccc
Q psy2649 425 TFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASEN 504 (1637)
Q Consensus 425 ~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~ 504 (1637)
..+.|++++....+-+...+++.|...+..-+.+++.+...+.+|.-...+....+.++.+++.++.|.-.+++.|.-|+
T Consensus 2304 E~~~plr~E~kRI~~E~~~~e~~L~~~~~~s~dl~~~~l~~r~~YSl~I~~Vh~~~~~md~v~~~~~rsi~v~~~l~~e~ 2383 (3164)
T COG5245 2304 EVKIPLREEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDTVHKDVLRSIFVSEILINED 2383 (3164)
T ss_pred hhcccchhHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHhhhhceeeeeecceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhccccCCcceeeehhhhhhhcchhhhHHHHhhhccccccccccCCC-----------------cccccC
Q psy2649 505 VRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLDLLNKFWLPTIKKSKID-----------------WFHEWP 567 (1637)
Q Consensus 505 ~rW~~~~~~l~~~~~~l~gd~lL~aa~i~Y~G~~~~~~R~~ll~~~w~~~l~~~~id-----------------~~~~w~ 567 (1637)
.+|..-..++.+....|+|||+++|.|.+|.|-++...|..++.. ....+.+ ++. +--.|-
T Consensus 2384 ~ew~g~~~~~pk~m~eL~g~~~~sS~~~~y~g~l~~~~Ra~~~~~-~~~~Is~-~F~~k~~~~r~fI~~~Vq~~e~~K~~ 2461 (3164)
T COG5245 2384 SEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRAIEFGM-SFIRISK-EFRDKEIRRRQFITEGVQKIEDFKEE 2461 (3164)
T ss_pred ccccchHhhccHHHHHhhcCCcchheeeeeeccccHHHHHHHHhh-hHHHhcc-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888876 5555553 331 011122
Q ss_pred C----ccccC--------ccccceeeccc------ccccC-CceEEEEecccchhHHHHHHHhcCcEEEEecccccccch
Q psy2649 568 Q----EALES--------VSLKFLVKSCE------SHRYG-NKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPV 628 (1637)
Q Consensus 568 ~----~gLp~--------d~n~~i~~~~~------~~~~~-~~l~v~~~~~~~~~~~le~ai~~G~~lli~dv~e~~dp~ 628 (1637)
. -||.+ |.-++++..+. .++|+ ++-...++....|...|++|+++|..++|.|. |.+||.
T Consensus 2462 ~c~tDy~lEN~~i~~~~qd~~~~L~dpss~ivt~~~~~y~~kkail~sf~e~~f~~~L~~a~r~gs~~iI~da-E~~d~~ 2540 (3164)
T COG5245 2462 ACSTDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQMYDEKKAILGSFREMEFAFGLSQARREGSDKIIGDA-EALDEE 2540 (3164)
T ss_pred HhcchhcchhhHHHhhccccHhHhcCcHHHHHHhhHHHhccchhhhhhhhhHHHHHHHHHHHHhccceEecch-hhhhhh
Confidence 1 11111 00122222221 45565 55677799999999999999999999999995 899999
Q ss_pred hhhhhhhhhhcCcc--eeEecccccccCCCceeeeeecccCCCCCccccccceEEEEEecccchhHHHHHHHhhhcCCCH
Q psy2649 629 LDNLIGRNLIRKGK--VVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKFERPDL 706 (1637)
Q Consensus 629 L~~ll~~~~~~~g~--~I~ig~~~i~~~p~F~L~l~T~~~~~~~~p~~~~~~~vInftvt~~~Le~qlL~~vv~~e~PeL 706 (1637)
+.++|.+++...+. .+.||+.+|..+-.|++|..+..++-..+.-...++.+|||+.+..++|.+++..+++.+.|.+
T Consensus 2541 i~rlIk~ef~s~~~eV~v~i~~~eI~~S~~~~vf~~se~~Sgdm~~~~~k~l~~v~Fvs~v~~~ET~i~d~~~~~~~~~l 2620 (3164)
T COG5245 2541 IGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVMFVSKVLGCETEIPDALEKLVSGPL 2620 (3164)
T ss_pred hhhhhhHHHhcCCceEEEEECCCeeEEecceeEEEEeecCCCchhHHHHHHhHhhheehhhhhhhhhhhHHHHhhhccch
Confidence 99999998876654 6899999999999999999999998788887888999999999999999999999999999999
Q ss_pred HHHhhhhhccccceeeeeccchhHHHHhhhccCCCccchhHHHhhhhhhhhhHHHHHHHhhhcchhHHHHHHHHhhcchh
Q psy2649 707 ELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIEIKVKEGKKTAKKIDEAREQYRPA 786 (1637)
Q Consensus 707 e~~~~~l~~~~~~~~~~l~~lE~~lL~~L~~s~g~iLed~~li~~L~~~K~~~~~i~~~l~e~~~~~~~i~~~r~~Y~pv 786 (1637)
..++.++.......+.+|..|+.++|..|..+.|++++++++..+|++.|++..+|+++..|+++...++++..+.|.-.
T Consensus 2621 f~~~~~l~~lk~~~~l~L~~L~~~ll~~L~~s~~nm~~tDEI~vll~NlKk~~~~Ie~~~sEs~ei~~riD~L~~eY~~s 2700 (3164)
T COG5245 2621 FVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIEDRIDALKSEYNAS 2700 (3164)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHhHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHhhhcccccCccccccchhhHHHHHHHhhhcccccchHHHHhhhhhceeeeeeeeecccccccchhhhhhhh
Q psy2649 787 AERASVIYFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKSDNLKGRVANLVESITFMTFQYTSRGLFERDKLIFMAQM 866 (1637)
Q Consensus 787 A~~~a~ly~~l~~l~~l~~mYqfSl~~f~~lf~~~l~~~~~~~~~~~r~~~L~~~lt~~~y~~v~r~Lf~~d~l~f~~~l 866 (1637)
..|.-.++-.++.+...+.||.+|+.+|...|.+.+.. ++..+.. +..++. .+---||.+||-.|.+.+
T Consensus 2701 vk~~~sI~v~~~~F~~~~~~y~~si~~~~s~f~k~~~~--KS~~~~a-~R~~l~--------~~~w~L~~edr~~F~~~l 2769 (3164)
T COG5245 2701 VKRLESIRVEIAMFDEKALMYNKSICELSSEFEKWRRM--KSKYLCA-IRYMLM--------SSEWILDHEDRSGFIHRL 2769 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHH-HHHHHH--------hhheeecchhHHHHHHHH
Confidence 99999999999999999999999999999999998864 1111111 112222 223345677777776666
Q ss_pred eeeeeccccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc-chhhccCCCCCCCCccccc
Q psy2649 867 TIQVKSLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREEL-DFLLRFPFQPGVSSPVDFL 945 (1637)
Q Consensus 867 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~l~~~~~~~~~~~~~wl 945 (1637)
-+.... +..-+.. .+ +..++. .+++ +-.+.+. +-+
T Consensus 2770 d~~f~~--------------~~~~~~~----------~l---------l~~~~~--~~~l~~~~l~~~---------~v~ 2805 (3164)
T COG5245 2770 DVSFLL--------------RTKRFVS----------TL---------LEDKNY--RQVLSSCSLYGN---------DVI 2805 (3164)
T ss_pred HHHHHH--------------HHHHHHH----------HH---------HhcccH--hHhhhhhhhccc---------ccc
Confidence 432200 0000000 00 001110 0000 0000100 000
Q ss_pred ccccccccccccchhhhhccchhhHHHHHHHHhhhhcCCCCcCCCchhhccchHHHHHHHhhhcCCCchhHHHHHHHHHh
Q psy2649 946 TNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQEWKNKSALQRLCIMRCLRPDRMTYAVRSFVEEK 1025 (1637)
Q Consensus 946 ~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~lp~~~~~l~~fqklll~r~lrpdrl~~~~~~~v~~~ 1025 (1637)
++. -..|....-....|...-+++..-... .....|++.......|-..
T Consensus 2806 s~s----------~dr~~~~~~~~~~h~~~~~~~~t~~t~--------------------nS~~n~~k~~~~~d~w~~a- 2854 (3164)
T COG5245 2806 SHS----------CDRFDRDVYRALKHQMDNRTHSTILTS--------------------NSKTNPYKEYTYNDSWAEA- 2854 (3164)
T ss_pred ccc----------cccccHHHHHHhhhhhhhhhheeeehh--------------------hcccChHHHHHHHHHHhhh-
Confidence 000 000110000111111111111110000 0011222222111112110
Q ss_pred hcCccccccccchhhhh-hccCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccc-cCCch-hHHHHhHHHhhh
Q psy2649 1026 MGDRYVNARAIEFEQSY-RESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVS-LGQGQ-EVIAEETIQIAS 1102 (1637)
Q Consensus 1026 lg~~~~~~~~~~l~~~~-~~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iS-lG~gq-~~~a~~~l~~a~ 1102 (1637)
+-..+ +....+++.+. +++..+.|+|.. +++-. .+...|- +|+.. +..|...+..+.
T Consensus 2855 f~Ve~-s~~~y~f~~~~~~~i~g~~plI~~--------------~k~s~-----E~~~~v~~lgS~Ene~ya~~~~~~S~ 2914 (3164)
T COG5245 2855 FEVED-SGDLYKFEEGLLELIVGHAPLIYA--------------HKKSL-----ENERNVDRLGSKENEVYAVLNSLFSR 2914 (3164)
T ss_pred hhhcC-CcchHHHHHHHHHhhhccchHHHH--------------HHhhh-----hhhhhhhhhcchhhhHHHHHHHHhhc
Confidence 00000 01223344443 345556565432 22211 1223333 77775 468889999999
Q ss_pred ccCCEEEEehhhhHHhhhhcH-HHHHHh-hhcCCCCcee-EEEecCCCCCCCccccccccccccccccCCCCchhhhhHH
Q psy2649 1103 TKGHWAILQNVHLVKNWLPTL-DKKMEA-SFEKPHKNYR-LFISAEPASDPEYHIIPQGVLDSSIKITNEPPTGMQANLH 1179 (1637)
Q Consensus 1103 ~~G~WvlL~N~HL~~~wl~~L-e~~l~~-~~~~~h~~FR-LwLts~~~~~~~~~~fP~~lLq~s~kv~~E~p~glk~~l~ 1179 (1637)
.+|.|+.++|+||+.+|..++ ++.++. ...+.|..|+ .|.++..++ .+|+.+|+.+-.++++.-||++.++.
T Consensus 2915 ~e~~w~~v~nI~lS~~w~k~y~~~~v~~~kaS~~~~k~k~~~t~~~~~d-----~lp~qlL~~~dsfv~~~~p~~~~~~~ 2989 (3164)
T COG5245 2915 KEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMWTSMVDAD-----MLPIQLLIAIDSFVSSTYPETGCGYA 2989 (3164)
T ss_pred cCCceEEEEeeEeecHHHHhhhHhhcchhHHHHHHhhhhheeeeeeccc-----cccHHHHHHhhhhhhccCCcccccHH
Confidence 999999999999999999874 343322 1234556665 444445554 49999999999999999999999999
Q ss_pred HHhhcCChhHHhhhhhhhhhHHHHHHHHHHHHhhhhhhccCCCCCCCcccccCCcceEeehhhHHHhhhc--CCCCcchh
Q psy2649 1180 KALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEAN--NNVPWEDL 1257 (1637)
Q Consensus 1180 ~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~plGw~~~Y~f~~~Dl~~~~~~l~~~l~~~--~~ipw~al 1257 (1637)
.++... .-... ..+...-+..|.|+|+||.+.+|-++||-|||.+|-|++.||......|.+.+-.+ +.+||...
T Consensus 2990 dL~e~~-~~~~~--~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D~df~f~T~~L~NIl~~nhln~~~wg~~ 3066 (3164)
T COG5245 2990 DLVEID-RYPFD--YTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNILFLNHLNARKWGNN 3066 (3164)
T ss_pred HHHhcC-ccccc--ceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCcchHHHHHHHHHHHHhccccccccccch
Confidence 888432 11111 11222346789999999999999999999999999999999999998888866555 78999999
Q ss_pred hHHHhhhccCCCCCChhhhHHHHHHHHHhcCcccccccccccCCCCCCCCC---------CccccccccccCCCCCCCcc
Q psy2649 1258 RYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAPGFPAPPNQ---------DYQGYHTYIDESLPPESPIL 1328 (1637)
Q Consensus 1258 ~~li~ei~YGGrv~d~~Drr~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~---------~~~~~~~~i~~l~~~~~p~~ 1328 (1637)
|.+|..|+||||++-.-|..++.-||..++..+. ...+.++.+.|+.. ..+.-...+..+|....|.|
T Consensus 3067 rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a~~~---~sQi~~~V~~~dp~l~~~~~ee~~rsSa~~vigqlpd~~l~~w 3143 (3164)
T COG5245 3067 RDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHET---SSQILASVPGGDPELVKFHMEEMCRSSAFGVIGQLPDLALCAW 3143 (3164)
T ss_pred hhheeEeeecCccchhhhHHHHHHHHHHhccCcc---cchhccCCcCCChHHHHhhHHHHHHHhhhhhcccCcccccchh
Confidence 9999999999999999999999999999997742 34556666666521 11112234555555667888
Q ss_pred cccCCCccccchhhhhHH
Q psy2649 1329 YGLHPNAEIGFLTTQAEN 1346 (1637)
Q Consensus 1329 ~gl~~na~~~~~~~~~~~ 1346 (1637)
+-+|.+....+....++.
T Consensus 3144 l~~p~~s~~~~~~vy~s~ 3161 (3164)
T COG5245 3144 LMGPCDSEYLKAIVYSSR 3161 (3164)
T ss_pred hcCchhHHHHHHHHHHHh
Confidence 888888887666555543
No 4
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=1.6e-56 Score=509.46 Aligned_cols=235 Identities=46% Similarity=0.751 Sum_probs=193.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHH
Q psy2649 45 YNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASL 124 (1637)
Q Consensus 45 yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~ 124 (1637)
||+.+.+|+||||++|++||+||+|||++|+||+||||.+||||+|++||||||+++++|+|.++++|+..||++|||.+
T Consensus 1 yN~~n~~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~ 80 (268)
T PF12780_consen 1 YNESNTKMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKA 80 (268)
T ss_dssp -------------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHH
T ss_pred CCccccccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccEEEEeccccccccceeeeehhhhccCCCCCCCCchHHHHHHHhhhcCCCccccCCCCccccc-chhhHHH
Q psy2649 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPEIPLTADLDPLTML-TDDATIA 203 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp~Lf~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~-s~~~~~~ 203 (1637)
+++||++|+++||+++|+|+.++.|||+||+||++|||||||++||++.|++.+|+.++. .|.. +.+++++
T Consensus 81 ~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~--------~~~~~~~~~~~~ 152 (268)
T PF12780_consen 81 LQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKA--------EGISDSRESLYE 152 (268)
T ss_dssp HHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHH--------CT--SSHHHHHH
T ss_pred HHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHH--------cCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988766 4433 7789999
Q ss_pred HhhccC---C-CccccccCcceeEecccccccccC----------hhhh------------------hhchHHHHHHHHh
Q psy2649 204 FWNNEG---L-PNDRMSTENATILVNSQRWPLMID----------PQEV------------------LRKPCAVFMAYVH 251 (1637)
Q Consensus 204 ~f~~~v---L-~v~~~s~~~~~~~~~~~~~P~l~~----------p~~a------------------l~~~~~~~~~~~h 251 (1637)
||.+|| | |++||||.|+.|+.++++||+|+| |++| +++.++.+|+.+|
T Consensus 153 ~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~~~~~~~~~~~l~~~~~~iH 232 (268)
T PF12780_consen 153 FFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDIELLSEELKKSLAEIMVFIH 232 (268)
T ss_dssp HHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHHHTSS--HHHHHHHHHHHHH
T ss_pred HHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 999999 7 999999999999999999999999 5555 3566889999999
Q ss_pred hhHhhhhHHHhhccccccCCCchhHHHHHHHHHHHH
Q psy2649 252 SSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLL 287 (1637)
Q Consensus 252 ~~~~~~~~~~~~~~~r~~~~TP~~fl~~l~~f~~l~ 287 (1637)
.++.+++++|+++.+|++|+||++|++||++|++++
T Consensus 233 ~sv~~~s~~y~~~~~r~~yvTP~syL~~i~~f~~Ll 268 (268)
T PF12780_consen 233 QSVEEISRKYLQELRRYNYVTPKSYLEFIKTFKNLL 268 (268)
T ss_dssp HHHHHHHHHHHHHCS------HHHHHHHHH------
T ss_pred ccchHhHHHHHHHcCCcceECcHHHHHHHhhhccCC
Confidence 999999999999999999999999999999999885
No 5
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=100.00 E-value=8.3e-48 Score=458.55 Aligned_cols=234 Identities=39% Similarity=0.693 Sum_probs=207.9
Q ss_pred hHHhhhhhhhhhHHhhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhh-
Q psy2649 321 IEEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQ- 399 (1637)
Q Consensus 321 ~~~e~~~~~~~~~~~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k- 399 (1637)
.++++.+.+++|+++|++|+|+|++|++||++|+++||+|||||++||++|+.||+|||+|||++ ++.+++++|..++
T Consensus 69 ~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~-~~~~k~~~W~~ak~ 147 (344)
T PF12777_consen 69 QAKEIEEIKEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPK-GKLPKDTSWESAKK 147 (344)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S--SEE---HHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhcc-ccccccccHHHHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999963 3445677888776
Q ss_pred -----------------------------------------hccccCCcCcchhhhhhheeeeEEEEecchhHHHHHHHH
Q psy2649 400 -----------------------------------------LKALKAPPQGLCAWVINIITFYNVWTFVEPKRKALAAAN 438 (1637)
Q Consensus 400 -----------------------------------------~~~i~~~a~~L~~WV~Ai~~Y~~v~~~v~P~~~~l~~~e 438 (1637)
+.++|.||++||.||+|+++|+.|+++|+|+++++++++
T Consensus 148 ~l~~~~~Fl~~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~ 227 (344)
T PF12777_consen 148 LLSDSDNFLQRLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAE 227 (344)
T ss_dssp HHCSSTTHHHHHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 223345688899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhcc
Q psy2649 439 AELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSA 518 (1637)
Q Consensus 439 ~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~ 518 (1637)
+++..++++|++.+.+|.+++++|+.|+.+|++.++++++++.+++.++.||+||.+|+++|++|+.||++++..++.+.
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQL 307 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeeehhhhhhhcchhhhHHHHhhhccccccc
Q psy2649 519 LTLPGDILLVTAFVSYVGCFTRSYRLDLLNKFWLPTI 555 (1637)
Q Consensus 519 ~~l~gd~lL~aa~i~Y~G~~~~~~R~~ll~~~w~~~l 555 (1637)
.+++|||||+|||++|||||+++||+.++.+.|.+.|
T Consensus 308 ~~l~GD~llaaa~isY~G~f~~~~R~~l~~~~W~~~l 344 (344)
T PF12777_consen 308 KNLVGDSLLAAAFISYLGPFTPEYRQELLKKMWKPYL 344 (344)
T ss_dssp HHHHHHHHHHHHHHHCCCCTSHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999987798764
No 6
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=3.5e-42 Score=383.20 Aligned_cols=202 Identities=50% Similarity=0.776 Sum_probs=178.8
Q ss_pred cccccCCccccCcc----ccceeeccc----------------ccccCCceEEEEecccchhHHHHHHHhcCcEEEEecc
Q psy2649 562 WFHEWPQEALESVS----LKFLVKSCE----------------SHRYGNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENI 621 (1637)
Q Consensus 562 ~~~~w~~~gLp~d~----n~~i~~~~~----------------~~~~~~~l~v~~~~~~~~~~~le~ai~~G~~lli~dv 621 (1637)
+++.|..+|||.|. ||+|+.++. ++.+++++.|+++++++|+++||+|+++|+||||+||
T Consensus 7 ~i~~W~~~GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~~~l~v~~~~~~~~~~~le~air~G~~llIe~v 86 (228)
T PF12781_consen 7 EIRQWISQGLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYKNDLEVTSFSDSNFLKQLENAIRFGKPLLIENV 86 (228)
T ss_dssp ---HHHHCT--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCCCCEEEEETTSTCHHHHHHHHHHCT-EEEEC-G
T ss_pred chhhHHhcCCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhhhcccccccchHhHHHHHHHHHHcCCeeeeccc
Confidence 57889999999998 999998875 3446778999999999999999999999999999999
Q ss_pred cccccchhhhhhhhhhhcCcceeEecccccccCCCceeeeeecccCCCCCccccccceEEEEEecccchhHHHHHHHhhh
Q psy2649 622 GESVDPVLDNLIGRNLIRKGKVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKF 701 (1637)
Q Consensus 622 ~e~~dp~L~~ll~~~~~~~g~~I~ig~~~i~~~p~F~L~l~T~~~~~~~~p~~~~~~~vInftvt~~~Le~qlL~~vv~~ 701 (1637)
+|.+||+|+|+|.|++++.|++|++||+.|+|||+|||||+|+.+||+|+|++++++++|||++|++||++|||+.+|+.
T Consensus 87 ~e~~dp~l~plL~k~~~~~g~~i~igd~~v~~~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~qll~~vv~~ 166 (228)
T PF12781_consen 87 GESLDPILDPLLRKNIIKSGKFIKIGDKEVDYNPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQLLSIVVKH 166 (228)
T ss_dssp CSCHHCTCHHHHTTT-EE-SSEEESSSSEEE--SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHHHHHHHHHH
T ss_pred ccccChhhhhhhcchhccCCceEEecCeEEEeeccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhhhhhccccceeeeeccchhHHHHhhhccCCCccchhHHHhhhhhhhhhHHHHH
Q psy2649 702 ERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIE 763 (1637)
Q Consensus 702 e~PeLe~~~~~l~~~~~~~~~~l~~lE~~lL~~L~~s~g~iLed~~li~~L~~~K~~~~~i~ 763 (1637)
|+|+||++|.+|.++.++++.+|+++|++||+.|++++|+||+|++||++|+.+|+++.+|+
T Consensus 167 e~PeLe~~r~~L~~~~~~~k~~L~~lEd~lL~~Ls~s~g~iLed~~Li~~L~~sK~~a~~Ie 228 (228)
T PF12781_consen 167 ERPELEEQRNELLKEIAENKIQLKELEDQLLELLSNSEGNILEDEELIETLESSKKTAAEIE 228 (228)
T ss_dssp HCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCTSSCCCCHCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 7
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.07 E-value=0.0053 Score=86.39 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh--------hHhhhcc
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLA--------DRLVNGL 500 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra--------~~Li~~L 500 (1637)
...++++.++.++..++++.....+.+..++....+++.+.+++..+...++.+++.++.++... ..|.+=|
T Consensus 466 e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL 545 (1201)
T PF12128_consen 466 EEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFL 545 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHH
Confidence 34556666777777777777777777777777777777777766666555555555555555544 4555668
Q ss_pred cccccchHHHHH
Q psy2649 501 ASENVRWKDSVL 512 (1637)
Q Consensus 501 ~~E~~rW~~~~~ 512 (1637)
..+++-|++.+.
T Consensus 546 ~~~~p~We~tIG 557 (1201)
T PF12128_consen 546 RKNKPGWEQTIG 557 (1201)
T ss_pred HhCCCcHHHHhH
Confidence 888999988654
No 8
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.01 E-value=0.001 Score=68.50 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=56.2
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceEEEecccc--CcchhhhHHHHHHHHhhcccccEEEEeccccccc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNY--GIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y--~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~ 146 (1637)
+||.|++|+||+++++..|...+..++++....-. ...+....++.++..|...++++|++++|-+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcc
Confidence 58999999999999999999999999988765433 3466778899999998655568999988866553
No 9
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.00049 Score=71.97 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=62.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHH----------HHHHHhhcccccEEEEeccccccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLA----------SLYLKAGLKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk----------~~~~~ag~~~~~~v~l~~d~~i~~ 146 (1637)
|+||+|++|+||+++++..|...+..++.+.++.+.+..|+.-... ..+.+|. .++.+++++|-+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 6899999999999999999999999999999998766543321111 1111111 167889999988888
Q ss_pred cceeeeehhhhccCCC
Q psy2649 147 EKFLVIINDMLASGEV 162 (1637)
Q Consensus 147 ~~fle~in~lL~~gev 162 (1637)
+..++.++++|..+.+
T Consensus 79 ~~v~~~L~~ll~~~~~ 94 (139)
T PF07728_consen 79 PEVLESLLSLLEERRI 94 (139)
T ss_dssp HHHHHTTHHHHSSSEE
T ss_pred HHHHHHHHHHHhhCcc
Confidence 9999999999998866
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0019 Score=75.91 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=55.1
Q ss_pred hhhhhhcCC-CCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHh----hcccccEEEEec
Q psy2649 66 RINRIMEAP-RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKA----GLKNAGIMFLMT 140 (1637)
Q Consensus 66 ri~RvL~~p-~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~a----g~~~~~~v~l~~ 140 (1637)
-|.|.+... -+||+|-|++|+||||++++-|...++.+.++..+.+ +++ |||+++.+| +. |++++++++
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvk----dlr~i~e~a~~~~~~-gr~tiLflD 111 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVK----DLREIIEEARKNRLL-GRRTILFLD 111 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHH----HHHHHHHHHHHHHhc-CCceEEEEe
Confidence 455666654 4899999999999999999999999999999876542 344 566655555 44 778888888
Q ss_pred ccc
Q psy2649 141 DSQ 143 (1637)
Q Consensus 141 d~~ 143 (1637)
|-+
T Consensus 112 EIH 114 (436)
T COG2256 112 EIH 114 (436)
T ss_pred hhh
Confidence 743
No 11
>KOG1969|consensus
Probab=96.73 E-value=0.0013 Score=81.98 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcc---cccEEEEeccccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLK---NAGIMFLMTDSQV 144 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~---~~~~v~l~~d~~i 144 (1637)
+-=+||+|++|-||+||++.+|.=+||.+++|+.+-.-+...+++-+-+++..-.+. .+|+|++++|=+=
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 345788999999999999999999999999999999988999999999988876444 8999999988443
No 12
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.0029 Score=78.13 Aligned_cols=112 Identities=17% Similarity=0.296 Sum_probs=72.7
Q ss_pred hhhhhcCCC-Cc-eEEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhH
Q psy2649 67 INRIMEAPR-GN-ALLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKID 120 (1637)
Q Consensus 67 i~RvL~~p~-gh-~lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~d 120 (1637)
+.+.+...+ +| +|+.|+.|+||+|++|..|...+| ++++++...+.++.+.++-
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL 109 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIREL 109 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHH
Confidence 445555554 78 588999999999999999887776 3666665555555555443
Q ss_pred HHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcCC
Q psy2649 121 LASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 121 Lk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~~ 182 (1637)
...+ ..+...++..|++++|.|.... +-.|.||.+=|=| =++...+...|...++..+
T Consensus 110 ~e~l-~~~p~~g~~KV~IIDEah~Ls~---~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 110 RDNV-KFAPMGGKYKVYIIDEVHMLTD---QSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred HHHH-HhhhhcCCCEEEEEechhhcCH---HHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 3332 3333567788999999888765 3466777543333 2456666666665555443
No 13
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.34 E-value=0.0074 Score=80.01 Aligned_cols=180 Identities=22% Similarity=0.402 Sum_probs=0.0
Q ss_pred cccchhhhhhccCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccC-----------------CchhHHHHh
Q psy2649 1034 RAIEFEQSYRESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLG-----------------QGQEVIAEE 1096 (1637)
Q Consensus 1034 ~~~~l~~~~~~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG-----------------~gq~~~a~~ 1096 (1637)
...++..+.....-..|+++=-+||+--++.|..+|++.| +++..|-|. .|+-.--+.
T Consensus 1529 T~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG-----~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~da 1603 (4600)
T COG5271 1529 TTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTG-----KKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDA 1603 (4600)
T ss_pred hHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhc-----CceEEeeccccchHHHHhCCCCCcccCceeEeccc
Q ss_pred HHHhhhccCCEEEEehhhhHHh----------------hhhcHHHHHHhhhcCCCCceeEEEecCCCCCCCcc-cccccc
Q psy2649 1097 TIQIASTKGHWAILQNVHLVKN----------------WLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYH-IIPQGV 1159 (1637)
Q Consensus 1097 ~l~~a~~~G~WvlL~N~HL~~~----------------wl~~Le~~l~~~~~~~h~~FRLwLts~~~~~~~~~-~fP~~l 1159 (1637)
-.-.||++|+||+|.-..||.+ ++|+|.+-+ ..|||||.|-+-.|..+..+. .+|-+.
T Consensus 1604 pfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f-----~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1604 PFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTF-----DVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred HHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhcccccccccccee-----eccCCeeeeeecCchhcCCCcccCCHHH
Q ss_pred ccccccccCCC--CchhhhhHHHHhhcCChhHHhhhhhhhhhHHHHHHHHHHHHhhhhhhccCCCCCCCcccccCCc
Q psy2649 1160 LDSSIKITNEP--PTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGD 1234 (1637)
Q Consensus 1160 Lq~s~kv~~E~--p~glk~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~plGw~~~Y~f~~~D 1234 (1637)
+.+=..|..+. ...+-......|-++.++.. .++.=..+-+.-=+-.|..||..| .|++||.-|
T Consensus 1679 ~nRFsvV~~d~lt~dDi~~Ia~~~yp~v~~d~~---------~kiik~ms~lqd~i~k~~~~g~~g--sPwefnlrd 1744 (4600)
T COG5271 1679 LNRFSVVKMDGLTTDDITHIANKMYPQVNEDWR---------LKIIKFMSRLQDNIEKDISFGSFG--SPWEFNLRD 1744 (4600)
T ss_pred hhhhheEEecccccchHHHHHHhhCCccChHHH---------HHHHHHHHHHHHhhhhhhcccCCC--CCeEEehHH
No 14
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.0042 Score=81.19 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=57.5
Q ss_pred hhhhhcCC-CCce-EEEeecCCchhhHHhHHHhhcccc------------------------ceEEEeccccCcchhhhH
Q psy2649 67 INRIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTLE------------------------PFQIQLKKNYGIPDLKID 120 (1637)
Q Consensus 67 i~RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~~------------------------~~~i~~~~~y~~~~f~~d 120 (1637)
+.+.+... -.|+ |+.|+.|+||+|++|.-|...+|. +++++.....++.++|+-
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReL 107 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTREL 107 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHH
Confidence 44445442 3788 789999999999999998777664 233333323455666654
Q ss_pred HHHHHHHhhcccccEEEEeccccccccceeeeehhhhcc
Q psy2649 121 LASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLAS 159 (1637)
Q Consensus 121 Lk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~ 159 (1637)
++.+ ......|+..|++|+|.|.... +-.|.||.+
T Consensus 108 ie~v-~~~P~~gk~KViIIDEAh~LT~---eAqNALLKt 142 (944)
T PRK14949 108 LDNV-QYRPSRGRFKVYLIDEVHMLSR---SSFNALLKT 142 (944)
T ss_pred HHHH-HhhhhcCCcEEEEEechHhcCH---HHHHHHHHH
Confidence 4443 3334567888999999887754 334555543
No 15
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.0063 Score=77.06 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=70.0
Q ss_pred Cce-EEEeecCCchhhHHhHHHhhccc-----------------------------cceEEEeccccCcchhhhHHHHHH
Q psy2649 76 GNA-LLVGVGGSGKQSLSRLSAFISTL-----------------------------EPFQIQLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 76 gh~-lLvG~~GsGr~sl~rlaa~~~~~-----------------------------~~~~i~~~~~y~~~~f~~dLk~~~ 125 (1637)
.|+ |+.|..|+||+|++|.-|...+| ++++++...+-++.+.++-++.+.
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~ 117 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAV 117 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHH
Confidence 687 77999999999999988776665 566776665556666665554443
Q ss_pred HHhhcccccEEEEeccccccccceeeeehhhhccCC-----CCCCCCchHHHHHHHhhhcCCC
Q psy2649 126 LKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGE-----VPDLFTDDEIENIVNNIAAEPE 183 (1637)
Q Consensus 126 ~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~ge-----vp~Lf~~ee~~~i~~~~~~~~~ 183 (1637)
... ..++.-|+||++.+.... +-.|.||.+=| +.=++...+..+|...++..+.
T Consensus 118 ~~P-~~gr~KViIIDEah~Ls~---~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 118 YAP-TAGRFKVYMIDEVHMLTN---HAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred hch-hcCCceEEEEEChHhcCH---HHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 333 466777888898877754 34678887533 3345666666666665554443
No 16
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.97 E-value=0.0068 Score=70.68 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=63.4
Q ss_pred hhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhh-------------HH----------
Q psy2649 65 CRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKI-------------DL---------- 121 (1637)
Q Consensus 65 ~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~-------------dL---------- 121 (1637)
.|+-+.+. -++|++|.|++||||+++++-.|...|..++.+..+...+..++-. .+
T Consensus 12 ~~~l~~l~-~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T TIGR02640 12 SRALRYLK-SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIV 90 (262)
T ss_pred HHHHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhccc
Confidence 34444444 3689999999999999999999998899999887655433222211 01
Q ss_pred -----HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCC
Q psy2649 122 -----ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 122 -----k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gev 162 (1637)
...+..|-. ++.+++++|-+-.++++...++.+|..|.+
T Consensus 91 ~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~ 134 (262)
T TIGR02640 91 RQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVL 134 (262)
T ss_pred ceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeE
Confidence 112223322 234778888777778787788888887754
No 17
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.88 E-value=0.011 Score=61.65 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=48.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHHH----HHHHHhhcccccEEEEeccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDLA----SLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dLk----~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
.+++|++++|++|+||+++++.++.-. +..++.+..+..+.......... ..........++.+++++|.+-
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 367899999999999999999999887 77777776654433222221111 2223334556778888888764
No 18
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.011 Score=76.04 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=57.9
Q ss_pred hhhhhcCC-CCce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhH
Q psy2649 67 INRIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKID 120 (1637)
Q Consensus 67 i~RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~d 120 (1637)
+.+.++.. -.|+ |+.|..|+||+|++|..|...+| ++++++...+.++.++++-
T Consensus 28 L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~l 107 (647)
T PRK07994 28 LANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTREL 107 (647)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHH
Confidence 34555543 3787 78999999999999999887777 3455655444455566543
Q ss_pred HHHHHHHhhcccccEEEEeccccccccceeeeehhhhc
Q psy2649 121 LASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLA 158 (1637)
Q Consensus 121 Lk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~ 158 (1637)
++. +......|+.-|++|++.+.... +-.|.||.
T Consensus 108 i~~-~~~~p~~g~~KV~IIDEah~Ls~---~a~NALLK 141 (647)
T PRK07994 108 LDN-VQYAPARGRFKVYLIDEVHMLSR---HSFNALLK 141 (647)
T ss_pred HHH-HHhhhhcCCCEEEEEechHhCCH---HHHHHHHH
Confidence 333 33344677888999999877654 23455554
No 19
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.81 E-value=0.0095 Score=75.14 Aligned_cols=101 Identities=22% Similarity=0.354 Sum_probs=64.6
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc----------------------------cceEEEeccccCcchhhhHHHHHHHH
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL----------------------------EPFQIQLKKNYGIPDLKIDLASLYLK 127 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~----------------------------~~~~i~~~~~y~~~~f~~dLk~~~~~ 127 (1637)
++.||.|+.|+||+|++|..|.-.+| ++++++...+.++ +|++.++..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~v----d~Ir~iie~ 119 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSV----DDIRRIIES 119 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCH----HHHHHHHHH
Confidence 57788999999999999998877665 3444444333333 455555544
Q ss_pred h---hcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcCCC
Q psy2649 128 A---GLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAEPE 183 (1637)
Q Consensus 128 a---g~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~~~ 183 (1637)
+ ...++.-|++++|.+.... ...|.||..=|-| =+|...+.+++...++..+.
T Consensus 120 a~~~P~~~~~KVvIIDEa~~Ls~---~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~ 180 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDEVHMLSK---GAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 180 (507)
T ss_pred HHhccccCCcEEEEEEChhhcCH---HHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcce
Confidence 4 3567778888998766543 3355666432222 25666777777776665543
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=95.76 E-value=0.013 Score=74.53 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhh----ccc-ccEEEEecccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAG----LKN-AGIMFLMTDSQVA 145 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag----~~~-~~~v~l~~d~~i~ 145 (1637)
.|..|+||.|++|+||+|+++..|.-.++.+++++.+..-+. +.++.++..+. +.+ .+.|++++|.+..
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA----DVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH----HHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 356789999999999999999999999999998876643222 34555444332 333 5677788876543
No 21
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.013 Score=75.31 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=69.4
Q ss_pred hhhhhcCCC-Cce-EEEeecCCchhhHHhHHHhhccc-----------------------------cceEEEeccccCcc
Q psy2649 67 INRIMEAPR-GNA-LLVGVGGSGKQSLSRLSAFISTL-----------------------------EPFQIQLKKNYGIP 115 (1637)
Q Consensus 67 i~RvL~~p~-gh~-lLvG~~GsGr~sl~rlaa~~~~~-----------------------------~~~~i~~~~~y~~~ 115 (1637)
+.+.+.+.+ .|+ |+.|+.|+||+|++|..|...+| ++++++...+.++.
T Consensus 28 L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd 107 (618)
T PRK14951 28 LTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVD 107 (618)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHH
Confidence 344444433 587 77899999999999999776665 45666655566666
Q ss_pred hhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcC
Q psy2649 116 DLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 116 ~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~ 181 (1637)
+.++-+..+. .....++.-|++|+|.+.... +..|.||.+-|-| -+|...+..++...++..
T Consensus 108 ~iReli~~~~-~~p~~g~~KV~IIDEvh~Ls~---~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR 174 (618)
T PRK14951 108 EVQQLLEQAV-YKPVQGRFKVFMIDEVHMLTN---TAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR 174 (618)
T ss_pred HHHHHHHHHH-hCcccCCceEEEEEChhhCCH---HHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh
Confidence 6655554433 333566677889999887654 3467777765543 234444444444444433
No 22
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.01 Score=74.54 Aligned_cols=80 Identities=13% Similarity=0.250 Sum_probs=52.9
Q ss_pred hhhhhhhcCCC-Cc-eEEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhh
Q psy2649 65 CRINRIMEAPR-GN-ALLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLK 118 (1637)
Q Consensus 65 ~ri~RvL~~p~-gh-~lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~ 118 (1637)
.++.+.+..++ +| +|+.|++|+||+|++|..|...+| .+++++.+.+.++.+++
T Consensus 24 ~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR 103 (472)
T PRK14962 24 KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR 103 (472)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHH
Confidence 34555555554 35 588999999999999988877665 57777665555555554
Q ss_pred hHHHHHHHHhhcccccEEEEecccccc
Q psy2649 119 IDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 119 ~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
.+++.....-..++..+++++|.+..
T Consensus 104 -~i~~~~~~~p~~~~~kVvIIDE~h~L 129 (472)
T PRK14962 104 -KIRDAVGYRPMEGKYKVYIIDEVHML 129 (472)
T ss_pred -HHHHHHhhChhcCCeEEEEEEChHHh
Confidence 24443333334566778888886544
No 23
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.011 Score=75.11 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=52.2
Q ss_pred hhhhcCCC-Cce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhHH
Q psy2649 68 NRIMEAPR-GNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKIDL 121 (1637)
Q Consensus 68 ~RvL~~p~-gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~dL 121 (1637)
.+.+...+ .|+ |+.|+.|+||+|++|..|...+| ++++++...+.++.++|+-+
T Consensus 28 ~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli 107 (702)
T PRK14960 28 SSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELL 107 (702)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 34444333 577 88999999999999988777665 56777665554555555433
Q ss_pred HHHHHHhhcccccEEEEecccccccc
Q psy2649 122 ASLYLKAGLKNAGIMFLMTDSQVADE 147 (1637)
Q Consensus 122 k~~~~~ag~~~~~~v~l~~d~~i~~~ 147 (1637)
..+ ..+...++.-|+++++.+....
T Consensus 108 ~~~-~y~P~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 108 DNV-PYAPTQGRFKVYLIDEVHMLST 132 (702)
T ss_pred HHH-hhhhhcCCcEEEEEechHhcCH
Confidence 332 2233556777888998877654
No 24
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.51 E-value=0.012 Score=78.25 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=62.7
Q ss_pred hhhhhcCC-CCce-EEEeecCCchhhHHhHHHhhccc--------------------------cceEEEeccccCcchhh
Q psy2649 67 INRIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTL--------------------------EPFQIQLKKNYGIPDLK 118 (1637)
Q Consensus 67 i~RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~--------------------------~~~~i~~~~~y~~~~f~ 118 (1637)
+.+.++.. -.|+ |+.|..|+||+|++|.-|...+| ++++|+...+.++++.|
T Consensus 27 L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR 106 (824)
T PRK07764 27 LSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDAR 106 (824)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHH
Confidence 44444443 3685 68899999999999988776654 24444433333444443
Q ss_pred hHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhcc-----CCCCCCCCchHHHHHHHhhhc
Q psy2649 119 IDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLAS-----GEVPDLFTDDEIENIVNNIAA 180 (1637)
Q Consensus 119 ~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~-----gevp~Lf~~ee~~~i~~~~~~ 180 (1637)
+ |++-+......++.-||||++.+.... +-.|.||.. +.+-=+|...+.++|+..|+.
T Consensus 107 ~-l~~~~~~~p~~~~~KV~IIDEad~lt~---~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS 169 (824)
T PRK07764 107 E-LRERAFFAPAESRYKIFIIDEAHMVTP---QGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS 169 (824)
T ss_pred H-HHHHHHhchhcCCceEEEEechhhcCH---HHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh
Confidence 3 322223334667777888998877764 335555532 222234444555555544443
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.48 E-value=0.017 Score=72.16 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhhhhcCCC-CceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHh---hcccc
Q psy2649 58 EDAMSHICRINRIMEAPR-GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKA---GLKNA 133 (1637)
Q Consensus 58 ~~~i~hi~ri~RvL~~p~-gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~a---g~~~~ 133 (1637)
++++..-..+.+++.... +|++|.|++|+||+|+++..|.-.+..++.+..+. .+. ++++.++..+ ...++
T Consensus 18 ~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-~~~----~~ir~ii~~~~~~~~~g~ 92 (413)
T PRK13342 18 EHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-SGV----KDLREVIEEARQRRSAGR 92 (413)
T ss_pred HHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-ccH----HHHHHHHHHHHHhhhcCC
Confidence 334443333455555433 58999999999999999999999999988876542 233 3445544443 23467
Q ss_pred cEEEEeccccccc
Q psy2649 134 GIMFLMTDSQVAD 146 (1637)
Q Consensus 134 ~~v~l~~d~~i~~ 146 (1637)
+.+++++|-+-..
T Consensus 93 ~~vL~IDEi~~l~ 105 (413)
T PRK13342 93 RTILFIDEIHRFN 105 (413)
T ss_pred ceEEEEechhhhC
Confidence 7888888876543
No 26
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.48 E-value=0.036 Score=68.36 Aligned_cols=54 Identities=26% Similarity=0.230 Sum_probs=42.2
Q ss_pred hhhhhhhhhhhhhhhhc------CCCCceEEEeecCCchhhHHhHHHhhccccceEEEec
Q psy2649 56 LFEDAMSHICRINRIME------APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK 109 (1637)
Q Consensus 56 lf~~~i~hi~ri~RvL~------~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~ 109 (1637)
+...+..|+.|+.-..+ .+.+|+||+|++||||++++|.-|...+..++.++.+
T Consensus 83 l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~ 142 (412)
T PRK05342 83 LSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADAT 142 (412)
T ss_pred HHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 34445567777743322 4679999999999999999999999989888887654
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.43 E-value=0.039 Score=69.52 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=51.4
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..+||.|++||||+.++|-.|.-.+..++.+..+.-++ +.+-...+++++..|. ...|+|++++|-+
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~-~~~P~IL~IDEID 328 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE-ALSPCILWIDEID 328 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH-hcCCcEEEehhhh
Confidence 45899999999999999999999999999998654322 1233456888888774 4578888888743
No 28
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.42 E-value=0.018 Score=77.83 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=65.9
Q ss_pred HhhhhhhhhhhhhhhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEecccc----Ccc
Q psy2649 51 SMNLVLFEDAMSHICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNY----GIP 115 (1637)
Q Consensus 51 ~~~lvlf~~~i~hi~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y----~~~ 115 (1637)
+++=|+=.+.. |.|+..||.. ..++++|+|++|+|||++++-.|.-. ++.++.+.++.-. ...
T Consensus 176 ~l~~vigr~~e--i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g 253 (857)
T PRK10865 176 KLDPVIGRDEE--IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 253 (857)
T ss_pred CCCcCCCCHHH--HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhh
Confidence 34444444442 6677777754 56799999999999999988777654 7888888765422 135
Q ss_pred hhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 116 DLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 116 ~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+|.+-||.++....-.+.+++++++|-|.
T Consensus 254 ~~e~~lk~~~~~~~~~~~~~ILfIDEih~ 282 (857)
T PRK10865 254 EFEERLKGVLNDLAKQEGNVILFIDELHT 282 (857)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEecHHH
Confidence 78888999998764446778888877553
No 29
>KOG0250|consensus
Probab=95.38 E-value=0.38 Score=63.56 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCceEEEEecccchhHHHHHHHhcCcEEEEec
Q psy2649 589 GNKLTVIRLGQKRVMDQIEKAVMSGFVLLIEN 620 (1637)
Q Consensus 589 ~~~l~v~~~~~~~~~~~le~ai~~G~~lli~d 620 (1637)
+.-+.++.+.||..+..|-.-..--+.|||+|
T Consensus 573 pTil~~le~ddp~V~N~LID~s~iE~~lLiEd 604 (1074)
T KOG0250|consen 573 PTILDALEFDDPEVLNVLIDKSGIEQVLLIED 604 (1074)
T ss_pred CceeeeeecCChHHHHHhhhhccceeEEEecc
Confidence 44567777888888888888888888888888
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.36 E-value=0.018 Score=69.02 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=51.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeee
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVI 152 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~ 152 (1637)
.+.+|++|.|++|+|||++++..|+-.+.++..+..+. .+...++...+... +.+.+++++|-|...+...+.
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~----~~~~~~l~~~l~~~---~~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA----LEKPGDLAAILTNL---EEGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch----hcCchhHHHHHHhc---ccCCEEEEehHhhhCHHHHHH
Confidence 34578999999999999999999998887765443222 22344566555443 345688888876655443343
Q ss_pred ehhhhc
Q psy2649 153 INDMLA 158 (1637)
Q Consensus 153 in~lL~ 158 (1637)
+.+++.
T Consensus 101 l~~~~~ 106 (305)
T TIGR00635 101 LYPAME 106 (305)
T ss_pred hhHHHh
Confidence 444443
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.36 E-value=0.034 Score=65.84 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=62.3
Q ss_pred hhhhhhhhhhhhhhhh---hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEec----cccCcchhhhHHHHHHHH
Q psy2649 55 VLFEDAMSHICRINRI---MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK----KNYGIPDLKIDLASLYLK 127 (1637)
Q Consensus 55 vlf~~~i~hi~ri~Rv---L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~ 127 (1637)
.|.+.++.|+.+=.=. ++-|.| ++|-|++|+||+.++|.+|.-++..++.+... +.++.. ..-||+++..
T Consensus 126 ~f~dk~~~hi~kn~l~~~~ik~Plg-llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEs--Ek~IR~~F~~ 202 (413)
T PLN00020 126 AFMDKVAVHIAKNFLALPNIKVPLI-LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEP--GKLIRQRYRE 202 (413)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCeE-EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcH--HHHHHHHHHH
Confidence 3556666666653222 233444 66789999999999999999999999988643 333332 3458888888
Q ss_pred hh----cccccEEEEeccccc
Q psy2649 128 AG----LKNAGIMFLMTDSQV 144 (1637)
Q Consensus 128 ag----~~~~~~v~l~~d~~i 144 (1637)
|. .+++|+|++|+|=+-
T Consensus 203 A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 203 AADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred HHHHhhccCCCeEEEEehhhh
Confidence 85 468999999988543
No 32
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.36 E-value=0.019 Score=69.05 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=47.6
Q ss_pred CceEE-EeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 76 GNALL-VGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 76 gh~lL-vG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
.|++| .|++|+||+++++..|.-.+.++..++.+.+ .....++.++.........+.+-+++++|.+-
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~-~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~ 111 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC-RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDR 111 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc-cHHHHHHHHHHHHHhhcccCCCeEEEEECccc
Confidence 46777 6999999999999988877888888876652 23334445665555554555667788888643
No 33
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.25 E-value=0.019 Score=63.63 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
.+-.|+||.|++|+|||||+++.|.-.+..+...... .-+=..||..++... +++.|++++|=|=.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~----~i~k~~dl~~il~~l---~~~~ILFIDEIHRl 113 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGP----AIEKAGDLAAILTNL---KEGDILFIDEIHRL 113 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECC----C--SCHHHHHHHHT-----TT-EEEECTCCC-
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccch----hhhhHHHHHHHHHhc---CCCcEEEEechhhc
Confidence 4668999999999999999999999999987654321 112246888887664 34567777764433
No 34
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.028 Score=72.16 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=68.3
Q ss_pred hhhhhcCC-CCce-EEEeecCCchhhHHhHHHhhccc--------------------------cceEEEeccccCcchhh
Q psy2649 67 INRIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTL--------------------------EPFQIQLKKNYGIPDLK 118 (1637)
Q Consensus 67 i~RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~--------------------------~~~~i~~~~~y~~~~f~ 118 (1637)
+.+.+... -+|+ |+.|+.|+||+|+++..|...+| ++++++...+-++.+.+
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iR 104 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTR 104 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHH
Confidence 34444443 4896 78899999999999988865443 34455444333454443
Q ss_pred hHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcCC
Q psy2649 119 IDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 119 ~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~~ 182 (1637)
+|++-+..+...++.-|++++|.+..... -.|.||.+=|-| =+|...+..+|...++..+
T Consensus 105 -el~~~~~~~P~~~~~KVvIIDEah~Lt~~---A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc 169 (584)
T PRK14952 105 -ELRDRAFYAPAQSRYRIFIVDEAHMVTTA---GFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 (584)
T ss_pred -HHHHHHHhhhhcCCceEEEEECCCcCCHH---HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhc
Confidence 34444555556677778899998776542 456666533332 2455555566666665443
No 35
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.023 Score=73.16 Aligned_cols=109 Identities=18% Similarity=0.286 Sum_probs=65.7
Q ss_pred hhhcCCC-Cce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhHHH
Q psy2649 69 RIMEAPR-GNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKIDLA 122 (1637)
Q Consensus 69 RvL~~p~-gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~dLk 122 (1637)
+.+...+ .|+ ||.|..|+||+|++|.-|...+| ++++++...+.++.+.++-++
T Consensus 30 ~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe 109 (830)
T PRK07003 30 HALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLE 109 (830)
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHH
Confidence 3344433 788 77899999999999977766555 466666655556555555444
Q ss_pred HHHHHhhcccccEEEEeccccccccceeeeehhhhcc-----CCCCCCCCchHHHHHHHhhhcC
Q psy2649 123 SLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLAS-----GEVPDLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 123 ~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~-----gevp~Lf~~ee~~~i~~~~~~~ 181 (1637)
.+.. .-..++.-|+||+|.+.... +-.|.||.+ ..+.=+|...+..+|...++..
T Consensus 110 ~a~~-~P~~gr~KVIIIDEah~LT~---~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 110 RAVY-APVDARFKVYMIDEVHMLTN---HAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred HHHh-ccccCCceEEEEeChhhCCH---HHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 4332 23456667888888877653 224566542 2333455555555554444433
No 36
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.02 E-value=0.024 Score=74.71 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=55.2
Q ss_pred hhhhhhhhhhhhhcCC-CCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEE
Q psy2649 59 DAMSHICRINRIMEAP-RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMF 137 (1637)
Q Consensus 59 ~~i~hi~ri~RvL~~p-~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~ 137 (1637)
..+.....+.|++... .+|++|.|++|+||+|+++..|...+..++.++.+. .++.+.++.++.+.......++..++
T Consensus 35 ~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-~~i~dir~~i~~a~~~l~~~~~~~IL 113 (725)
T PRK13341 35 HILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-AGVKDLRAEVDRAKERLERHGKRTIL 113 (725)
T ss_pred HHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-hhhHHHHHHHHHHHHHhhhcCCceEE
Confidence 3333333455555554 369999999999999999999998888887765432 23444444444432222333566788
Q ss_pred Eecccccc
Q psy2649 138 LMTDSQVA 145 (1637)
Q Consensus 138 l~~d~~i~ 145 (1637)
+++|-+-.
T Consensus 114 ~IDEIh~L 121 (725)
T PRK13341 114 FIDEVHRF 121 (725)
T ss_pred EEeChhhC
Confidence 88886543
No 37
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.95 E-value=0.022 Score=75.28 Aligned_cols=109 Identities=16% Similarity=0.264 Sum_probs=69.6
Q ss_pred hhhhhhhhhhhhhhhhhh-------cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHH-----
Q psy2649 54 LVLFEDAMSHICRINRIM-------EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDL----- 121 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL-------~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dL----- 121 (1637)
++=-++|++.|++.-+.. +.|.|++||+|++|+||+.+++..|-..+..++.++++. |.....-..|
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se-~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE-YMERHTVSRLIGAPP 538 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechh-hcccccHHHHcCCCC
Confidence 344467777777665543 457899999999999999999988888888888887652 3221111111
Q ss_pred -------HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 122 -------ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 122 -------k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
...+..+--.+...|++|+|-+-.++.....+-.+|..|.+.
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~lt 587 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLT 587 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeee
Confidence 112333311223467888887666666555555566666664
No 38
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.033 Score=68.24 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=62.0
Q ss_pred hhhcCC-CCce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhHHH
Q psy2649 69 RIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKIDLA 122 (1637)
Q Consensus 69 RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~dLk 122 (1637)
+.+... -.|+ |+.|++|+||+|++|..|....| +++.++.....++ ++++
T Consensus 30 ~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v----~~ir 105 (363)
T PRK14961 30 NGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKV----EEMR 105 (363)
T ss_pred HHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCH----HHHH
Confidence 334432 3677 78999999999999999876654 2344433322333 4455
Q ss_pred HHHHHh---hcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhc
Q psy2649 123 SLYLKA---GLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAA 180 (1637)
Q Consensus 123 ~~~~~a---g~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~ 180 (1637)
.++..+ ...++.-|++++|.+-... +..|.||..-|-| -+|...+.+.+...++.
T Consensus 106 ~i~~~~~~~p~~~~~kviIIDEa~~l~~---~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 106 EILDNIYYSPSKSRFKVYLIDEVHMLSR---HSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred HHHHHHhcCcccCCceEEEEEChhhcCH---HHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 554433 3456667888898776543 2346666655433 24445555555555543
No 39
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.90 E-value=0.075 Score=65.23 Aligned_cols=113 Identities=19% Similarity=0.316 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHhHHHHHH--------------------HhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchh
Q psy2649 30 DWATLHKILSETMTSYNEIVA--------------------SMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQ 89 (1637)
Q Consensus 30 ~~~~l~~~l~~~l~~yn~~~~--------------------~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~ 89 (1637)
++.++.+-|.+.++.|+.... .-++++.++.++.+.+. |. -++|++|.|++|+||+
T Consensus 133 ~~~~~~~~l~~~i~~~~~~~~s~~~~~~p~~~~~~y~~~~~l~d~~i~e~~le~l~~~---L~-~~~~iil~GppGtGKT 208 (459)
T PRK11331 133 DYTRFASMLDNIINDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPETTIETILKR---LT-IKKNIILQGPPGVGKT 208 (459)
T ss_pred CHHHHHHHHhhHHHHHHHhhccccccCCchhcccchhHHHHhhcccCCHHHHHHHHHH---Hh-cCCCEEEECCCCCCHH
Confidence 567777777777777764310 11344555555555333 32 4799999999999999
Q ss_pred hHHhHHHhhccc-----cceEEEeccccCcchhhh--------------HHHHHHHHhhcc-cccEEEEeccccccc
Q psy2649 90 SLSRLSAFISTL-----EPFQIQLKKNYGIPDLKI--------------DLASLYLKAGLK-NAGIMFLMTDSQVAD 146 (1637)
Q Consensus 90 sl~rlaa~~~~~-----~~~~i~~~~~y~~~~f~~--------------dLk~~~~~ag~~-~~~~v~l~~d~~i~~ 146 (1637)
++++-.|..... .+..+..+.+|+..+|-+ -+++++.+|--. +++.+++++|-+-.+
T Consensus 209 ~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 209 FVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred HHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 998866654432 233445666666555532 134556666332 467888887765554
No 40
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.033 Score=70.81 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=60.2
Q ss_pred hhhhhcCC-CCce-EEEeecCCchhhHHhHHHhhcccc------------------------ceEEEeccccCcchhhhH
Q psy2649 67 INRIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTLE------------------------PFQIQLKKNYGIPDLKID 120 (1637)
Q Consensus 67 i~RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~~------------------------~~~i~~~~~y~~~~f~~d 120 (1637)
+.+.+... -.|+ |+.|++|+||+|++|.-|...+|+ +++++...+.++.++++-
T Consensus 28 L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l 107 (509)
T PRK14958 28 LSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTREL 107 (509)
T ss_pred HHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHH
Confidence 33444332 3776 789999999999999988877663 777777666777777764
Q ss_pred HHHHHHHhhcccccEEEEeccccccccceeeeehhhhc
Q psy2649 121 LASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLA 158 (1637)
Q Consensus 121 Lk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~ 158 (1637)
+..+ ..+...++.-|+++++.+..... -.|.||.
T Consensus 108 ~~~~-~~~p~~~~~kV~iIDE~~~ls~~---a~naLLk 141 (509)
T PRK14958 108 LDNI-PYAPTKGRFKVYLIDEVHMLSGH---SFNALLK 141 (509)
T ss_pred HHHH-hhccccCCcEEEEEEChHhcCHH---HHHHHHH
Confidence 4443 33456677778889998776542 2455554
No 41
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.90 E-value=0.039 Score=74.49 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=62.0
Q ss_pred HhhhhhhhhhhhhhhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhh----------ccccceEEEecc-----ccCc
Q psy2649 51 SMNLVLFEDAMSHICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFI----------STLEPFQIQLKK-----NYGI 114 (1637)
Q Consensus 51 ~~~lvlf~~~i~hi~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~----------~~~~~~~i~~~~-----~y~~ 114 (1637)
+++=|+-.+.. |.|+..+|.. ...|.+|+|++|+|||++++..|.- .+..++.++++. .| .
T Consensus 185 ~ld~~iGr~~e--i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~-~ 261 (852)
T TIGR03345 185 KIDPVLGRDDE--IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV-K 261 (852)
T ss_pred CCCcccCCHHH--HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc-c
Confidence 34434444432 5555555544 5689999999999999999987753 456677665542 22 4
Q ss_pred chhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 115 PDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 115 ~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
.+|.+.||+++..+.-.+.+++++++|-|-
T Consensus 262 ge~e~~lk~ii~e~~~~~~~~ILfIDEih~ 291 (852)
T TIGR03345 262 GEFENRLKSVIDEVKASPQPIILFIDEAHT 291 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEeChHH
Confidence 689999999999875445678887766544
No 42
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.039 Score=70.58 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=53.8
Q ss_pred hhhhhhhcCCC-CceE-EEeecCCchhhHHhHHHhhcccc------------------------ceEEEeccccCcchhh
Q psy2649 65 CRINRIMEAPR-GNAL-LVGVGGSGKQSLSRLSAFISTLE------------------------PFQIQLKKNYGIPDLK 118 (1637)
Q Consensus 65 ~ri~RvL~~p~-gh~l-LvG~~GsGr~sl~rlaa~~~~~~------------------------~~~i~~~~~y~~~~f~ 118 (1637)
..+.|.+...+ .|++ +.|+.|+||+|+++.-|....|+ +++|+...+-++.+.+
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR 105 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAK 105 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHH
Confidence 34455555543 4655 58999999999999988877764 5556543344444444
Q ss_pred hHHHHHHHHhhcccccEEEEeccccccc
Q psy2649 119 IDLASLYLKAGLKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 119 ~dLk~~~~~ag~~~~~~v~l~~d~~i~~ 146 (1637)
+ |++.+......++..|++++|.+...
T Consensus 106 ~-L~~~~~~~p~~g~~kVIIIDEad~Lt 132 (624)
T PRK14959 106 R-LKEAIGYAPMEGRYKVFIIDEAHMLT 132 (624)
T ss_pred H-HHHHHHhhhhcCCceEEEEEChHhCC
Confidence 3 55555555567778889999887664
No 43
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.043 Score=71.33 Aligned_cols=88 Identities=16% Similarity=0.302 Sum_probs=53.8
Q ss_pred hhhhhcCC-CCce-EEEeecCCchhhHHhHHHhhcccc---------------------ceEEEeccccCcchhhhHHHH
Q psy2649 67 INRIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTLE---------------------PFQIQLKKNYGIPDLKIDLAS 123 (1637)
Q Consensus 67 i~RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~~---------------------~~~i~~~~~y~~~~f~~dLk~ 123 (1637)
+.+.+... ..|+ |+.|+.|+||++++|.-|....|. ++++....+-++.+.++ |.+
T Consensus 30 L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IRe-Lie 108 (725)
T PRK07133 30 LKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRE-LIE 108 (725)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHH-HHH
Confidence 45555553 3787 679999999999999887765552 23333222233344433 334
Q ss_pred HHHHhhcccccEEEEeccccccccceeeeehhhhc
Q psy2649 124 LYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLA 158 (1637)
Q Consensus 124 ~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~ 158 (1637)
.+......++.-|+++++.+.... +..|.||.
T Consensus 109 ~~~~~P~~g~~KV~IIDEa~~LT~---~A~NALLK 140 (725)
T PRK07133 109 NVKNLPTQSKYKIYIIDEVHMLSK---SAFNALLK 140 (725)
T ss_pred HHHhchhcCCCEEEEEEChhhCCH---HHHHHHHH
Confidence 444455667888899999776543 23445553
No 44
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=94.71 E-value=0.025 Score=64.03 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCchhHHHHhHHHhhhccCCEEEEehh--hhHHhhhhcH
Q psy2649 1046 SSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETIQIASTKGHWAILQNV--HLVKNWLPTL 1123 (1637)
Q Consensus 1046 ~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~~~a~~~l~~a~~~G~WvlL~N~--HL~~~wl~~L 1123 (1637)
+...|+|+ ||.....++.+.+. ..++.++++++.. -.+.|+.|++-|.-|+++|+ ++.+...+-|
T Consensus 32 ~~r~PLiI------DPq~qa~~wi~~~~----~~~l~v~~~~~~~---~~~~le~air~G~~llIe~v~e~~dp~l~plL 98 (228)
T PF12781_consen 32 SRRWPLII------DPQGQANKWIKNMY----KNDLEVTSFSDSN---FLKQLENAIRFGKPLLIENVGESLDPILDPLL 98 (228)
T ss_dssp -SSEEEEE------STTTCHHHHHHHHC----CCCEEEEETTSTC---HHHHHHHHHHCT-EEEEC-GCSCHHCTCHHHH
T ss_pred cCCCceEE------CCchHHHHHHHHhh----hhcccccccchHh---HHHHHHHHHHcCCeeeecccccccChhhhhhh
Confidence 45678876 99999999987653 2468888888653 46689999999999999998 3544444434
Q ss_pred HHHHHhh---------hcCCCCceeEEEecCCCCCCCccccccccccccccccCC-CCchhhhhHHHH
Q psy2649 1124 DKKMEAS---------FEKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNE-PPTGMQANLHKA 1181 (1637)
Q Consensus 1124 e~~l~~~---------~~~~h~~FRLwLts~~~~~~~~~~fP~~lLq~s~kv~~E-~p~glk~~l~~~ 1181 (1637)
.+.+... .-..|++|||||++.-.. ..+|+.+..+...|-|- .+.|+-..|...
T Consensus 99 ~k~~~~~g~~i~igd~~v~~~~~FrL~L~T~~~~----p~~~pe~~s~vtviNFtvt~~gLe~qll~~ 162 (228)
T PF12781_consen 99 RKNIIKSGKFIKIGDKEVDYNPNFRLYLTTKLPN----PHYPPEVSSKVTVINFTVTQEGLEDQLLSI 162 (228)
T ss_dssp TTT-EE-SSEEESSSSEEE--SS-EEEEEESSTT----SHHHHHHHHCSEEEE----CHHHHHHHHHH
T ss_pred cchhccCCceEEecCeEEEeeccceEEEeecCCC----CCCChhhhceeeEEEEEecHHHHHHHHHHH
Confidence 3321100 012489999999875432 24777766655555554 466887766643
No 45
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.69 E-value=0.026 Score=66.69 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhH--------------HHHHHHHhhcccccEEEE
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKID--------------LASLYLKAGLKNAGIMFL 138 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~d--------------Lk~~~~~ag~~~~~~v~l 138 (1637)
.+++|++|.|++|+||+|+++..|...+..++.+..+..-+..|..-. ....+..|- .++.+++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~--~~g~ill 139 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL--QHNVALC 139 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH--hCCeEEE
Confidence 358999999999999999999999999999998886655333221110 112233331 3557899
Q ss_pred eccccccccceeeeehhhhcc
Q psy2649 139 MTDSQVADEKFLVIINDMLAS 159 (1637)
Q Consensus 139 ~~d~~i~~~~fle~in~lL~~ 159 (1637)
++|-+...+.-+.-+|.+|..
T Consensus 140 lDEin~a~p~~~~~L~~lLE~ 160 (327)
T TIGR01650 140 FDEYDAGRPDVMFVIQRVLEA 160 (327)
T ss_pred echhhccCHHHHHHHHHHhcc
Confidence 999888888888888888874
No 46
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=94.65 E-value=0.031 Score=74.07 Aligned_cols=175 Identities=19% Similarity=0.266 Sum_probs=142.4
Q ss_pred hhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhh---------------
Q psy2649 335 DLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQ--------------- 399 (1637)
Q Consensus 335 ~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k--------------- 399 (1637)
-+..|+-...+-...++..-+....|++.+-+||..++..-++|.++-..+.|.++ .--|+...
T Consensus 2530 iI~daE~~d~~i~rlIk~ef~s~~~eV~v~i~~~eI~~S~~~~vf~~se~~Sgdm~-~~~~k~l~~v~Fvs~v~~~ET~i 2608 (3164)
T COG5245 2530 IIGDAEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMG-SIEWKQLIQVMFVSKVLGCETEI 2608 (3164)
T ss_pred EecchhhhhhhhhhhhhHHHhcCCceEEEEECCCeeEEecceeEEEEeecCCCchh-HHHHHHhHhhheehhhhhhhhhh
Confidence 34455555555666788888999999999999999999999999998765444321 11233322
Q ss_pred ----hcccc-------------CCcCcchhhhhhheeeeEEEEecchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 400 ----LKALK-------------APPQGLCAWVINIITFYNVWTFVEPKRK--ALAAANAELAAASQKLAELKAKIASLEA 460 (1637)
Q Consensus 400 ----~~~i~-------------~~a~~L~~WV~Ai~~Y~~v~~~v~P~~~--~l~~~e~~l~~~~~~l~~~~~~l~~le~ 460 (1637)
++..+ ++|..|..|+.|=+.|.+......|..+ ++..+..++++.....+++..+..+++.
T Consensus 2609 ~d~~~~~~~~~lf~~~~~l~~lk~~~~l~L~~L~~~ll~~L~~s~~nm~~tDEI~vll~NlKk~~~~Ie~~~sEs~ei~~ 2688 (3164)
T COG5245 2609 PDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIED 2688 (3164)
T ss_pred hHHHHhhhccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHhHHHHHHHHHHHHhhHhhHHH
Confidence 11111 2255699999999999999999999988 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHH
Q psy2649 461 TLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDS 510 (1637)
Q Consensus 461 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~ 510 (1637)
++++|..+|....+....+--.++.-.++-.-...-+.-+.++-+||...
T Consensus 2689 riD~L~~eY~~svk~~~sI~v~~~~F~~~~~~y~~si~~~~s~f~k~~~~ 2738 (3164)
T COG5245 2689 RIDALKSEYNASVKRLESIRVEIAMFDEKALMYNKSICELSSEFEKWRRM 2738 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888777888899999999999765
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.61 E-value=0.017 Score=59.43 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc--------cccceEEEeccccCcchhhhH-----------------HHHHHHH
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS--------TLEPFQIQLKKNYGIPDLKID-----------------LASLYLK 127 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~--------~~~~~~i~~~~~y~~~~f~~d-----------------Lk~~~~~ 127 (1637)
+-++++++.|.+|+||+++++-.+.-. +..++.+.....-+..+|... +.+.+.+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 457899999999999999966555544 566776665544333333222 2233333
Q ss_pred hhcccccEEEEecccccc-ccceeeeehhhhccCCC
Q psy2649 128 AGLKNAGIMFLMTDSQVA-DEKFLVIINDMLASGEV 162 (1637)
Q Consensus 128 ag~~~~~~v~l~~d~~i~-~~~fle~in~lL~~gev 162 (1637)
+--.....+++++|.|.. +..+++.+-++++...+
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~ 117 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNI 117 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBE
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCC
Confidence 322222368889998877 66667766666664443
No 48
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.047 Score=68.48 Aligned_cols=104 Identities=19% Similarity=0.308 Sum_probs=70.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhc------------------------cccceEEEeccccCcchhhhHHHHHHHHhhccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFIS------------------------TLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKN 132 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~------------------------~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~ 132 (1637)
|.|+.|+.|+||+|++|+.|... ..++++++...+.++.+.++-+.. .....+.+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~-~~~~P~~~ 115 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILEN-SCYLPISS 115 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHH-HHhccccC
Confidence 57889999999999999988633 236677877766676666553333 33445667
Q ss_pred ccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcCCCc
Q psy2649 133 AGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAEPEI 184 (1637)
Q Consensus 133 ~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~~~~ 184 (1637)
+.-|++++|.+.... +..|.||..-|=| =+|...|.+++...++..+..
T Consensus 116 ~~KVvIIDEah~Ls~---~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~ 169 (491)
T PRK14964 116 KFKVYIIDEVHMLSN---SAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQR 169 (491)
T ss_pred CceEEEEeChHhCCH---HHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhee
Confidence 788899999766543 3467777654432 456667777777766655443
No 49
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.54 E-value=0.046 Score=73.23 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=57.1
Q ss_pred hhhhhhcC-CCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEecccc----CcchhhhHHHHHHHHhhc
Q psy2649 66 RINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNY----GIPDLKIDLASLYLKAGL 130 (1637)
Q Consensus 66 ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y----~~~~f~~dLk~~~~~ag~ 130 (1637)
|+.++|.. -..|++|+|++|+||+++++..|.-. ++.++.++++.-. -..+|.+.||+++..+-
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~- 271 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIE- 271 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHh-
Confidence 56666654 46799999999999999999888754 7888888754321 12589999999998873
Q ss_pred ccccEEEEecccc
Q psy2649 131 KNAGIMFLMTDSQ 143 (1637)
Q Consensus 131 ~~~~~v~l~~d~~ 143 (1637)
.+.+++++++|-+
T Consensus 272 ~~~~~ILfiDEih 284 (731)
T TIGR02639 272 KEPNAILFIDEIH 284 (731)
T ss_pred ccCCeEEEEecHH
Confidence 3456777766643
No 50
>PLN03025 replication factor C subunit; Provisional
Probab=94.44 E-value=0.063 Score=64.69 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=44.4
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc-----cceEEEeccccCcchhhhHHHHHHHHh-hc-ccccEEEEeccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL-----EPFQIQLKKNYGIPDLKIDLASLYLKA-GL-KNAGIMFLMTDSQV 144 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~-----~~~~i~~~~~y~~~~f~~dLk~~~~~a-g~-~~~~~v~l~~d~~i 144 (1637)
.|++|.|++|+||+|+++..|.-..+ .+++++.+...+...+++.++...... +. .+..-+++++|.+-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~ 110 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS 110 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhh
Confidence 58999999999999999987765422 356666665566666666665533221 11 23455667776544
No 51
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.25 E-value=0.072 Score=62.45 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=50.5
Q ss_pred hhhcCCCCceEEEeecCCchhhHHhHHHhhccc-cceEEEe-ccccCcchh--------------------hhHHHHHHH
Q psy2649 69 RIMEAPRGNALLVGVGGSGKQSLSRLSAFISTL-EPFQIQL-KKNYGIPDL--------------------KIDLASLYL 126 (1637)
Q Consensus 69 RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~-~~~~i~~-~~~y~~~~f--------------------~~dLk~~~~ 126 (1637)
-.++.+.|-++|+|++|+||||+++..+..... .+....+ ...++..++ ...|...+.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 334556677899999999999999987765442 2221111 111111111 122333333
Q ss_pred HhhcccccEEEEeccccccccceeeeehhh
Q psy2649 127 KAGLKNAGIMFLMTDSQVADEKFLVIINDM 156 (1637)
Q Consensus 127 ~ag~~~~~~v~l~~d~~i~~~~fle~in~l 156 (1637)
.....+++++++++|.|...+.-++.+..|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l 146 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRML 146 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHH
Confidence 333467888999999887765545544433
No 52
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.23 E-value=0.055 Score=70.43 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=63.4
Q ss_pred CCce-EEEeecCCchhhHHhHHHhhccc-------------------------cceEEEeccccCcchhhhHHHHHHHHh
Q psy2649 75 RGNA-LLVGVGGSGKQSLSRLSAFISTL-------------------------EPFQIQLKKNYGIPDLKIDLASLYLKA 128 (1637)
Q Consensus 75 ~gh~-lLvG~~GsGr~sl~rlaa~~~~~-------------------------~~~~i~~~~~y~~~~f~~dLk~~~~~a 128 (1637)
.+|+ |+.|+.|+||+|++|.-|...+| ++++++.+...++.++++ +.+.+...
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~ 115 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFR 115 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhC
Confidence 4787 78999999999999987755443 234444434445444443 33333333
Q ss_pred hcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcCC
Q psy2649 129 GLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 129 g~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~~ 182 (1637)
...++.-|+++++.+.... +..|.||..-|-| =+|...+.+.+...++..+
T Consensus 116 p~~~~~kVvIIDEa~~L~~---~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~ 171 (585)
T PRK14950 116 PALARYKVYIIDEVHMLST---AAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRC 171 (585)
T ss_pred cccCCeEEEEEeChHhCCH---HHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhcc
Confidence 4556777888888765543 3466666544333 2555667777766665444
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.19 E-value=0.082 Score=67.12 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=45.7
Q ss_pred CCce-EEEeecCCchhhHHhHHHhhccc-----------------------cceEEEeccccCcchhhhHHHHHHHHhhc
Q psy2649 75 RGNA-LLVGVGGSGKQSLSRLSAFISTL-----------------------EPFQIQLKKNYGIPDLKIDLASLYLKAGL 130 (1637)
Q Consensus 75 ~gh~-lLvG~~GsGr~sl~rlaa~~~~~-----------------------~~~~i~~~~~y~~~~f~~dLk~~~~~ag~ 130 (1637)
-+|+ |+.|++|+||+|+++..|....| ++++++...+.++.+.++ ++.-+.....
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p~ 113 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRD-LREKVLLAPL 113 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHH-HHHHHhhccc
Confidence 3788 88999999999999887765544 366666655555545443 3443334445
Q ss_pred ccccEEEEecccc
Q psy2649 131 KNAGIMFLMTDSQ 143 (1637)
Q Consensus 131 ~~~~~v~l~~d~~ 143 (1637)
.+++-+++++|.+
T Consensus 114 ~~~~kVVIIDEad 126 (504)
T PRK14963 114 RGGRKVYILDEAH 126 (504)
T ss_pred cCCCeEEEEECcc
Confidence 5667778888864
No 54
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.16 E-value=0.056 Score=65.43 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=48.3
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
..|.+|+++.|++|+|||++++..|.-.+..+..+.... .+-..|+..++... +...+++++|-+-.
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~----~~~~~~l~~~l~~l---~~~~vl~IDEi~~l 114 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA----LEKPGDLAAILTNL---EEGDVLFIDEIHRL 114 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc----ccChHHHHHHHHhc---ccCCEEEEecHhhc
Confidence 346789999999999999999999999998876543221 23345677766554 34567778876544
No 55
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.04 E-value=0.088 Score=54.16 Aligned_cols=38 Identities=32% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc---ceEEEeccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE---PFQIQLKKN 111 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~---~~~i~~~~~ 111 (1637)
+++|++|+|++||||+++++..|...... ++.+.....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 46899999999999999999777777765 776665543
No 56
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.059 Score=68.58 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=64.8
Q ss_pred hhhhhcCCC-Cc-eEEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhH
Q psy2649 67 INRIMEAPR-GN-ALLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKID 120 (1637)
Q Consensus 67 i~RvL~~p~-gh-~lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~d 120 (1637)
+.+.++..+ .| .|+.|+.|+||+|++|.-|...+| ++++++....-++.+.++=
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~i 107 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEI 107 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHH
Confidence 455565544 46 467899999999999988875554 4555544344444444332
Q ss_pred HHHHHHHhhcccccEEEEeccccccccceeeeehhhhcc-----CCCCCCCCchHHHHHHHhhhcCC
Q psy2649 121 LASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLAS-----GEVPDLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 121 Lk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~-----gevp~Lf~~ee~~~i~~~~~~~~ 182 (1637)
+ +.+......++..|++++|.+-.... -.|.||.. +.+.=+|...+...+...++..+
T Consensus 108 i-~~~~~~p~~g~~kViIIDEa~~ls~~---a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 108 L-DNIQYMPSQGRYKVYLIDEVHMLSKQ---SFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred H-HHHHhhhhcCCcEEEEEechhhccHH---HHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 2 22333346677789999997655442 23444432 22323455555666665555444
No 57
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.00 E-value=0.072 Score=67.93 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=61.7
Q ss_pred hhhhcC-CCCce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhHH
Q psy2649 68 NRIMEA-PRGNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKIDL 121 (1637)
Q Consensus 68 ~RvL~~-p~gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~dL 121 (1637)
.+.++. ..+|+ |+.|+.|+||+|+++..|....| ++++++...+.++.+.++ +
T Consensus 29 ~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IRe-I 107 (605)
T PRK05896 29 VNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRN-I 107 (605)
T ss_pred HHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHH-H
Confidence 334433 34674 56899999999999988776544 445554443445555544 3
Q ss_pred HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCC-----CCCCCCchHHHHHHHhhhcCC
Q psy2649 122 ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGE-----VPDLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 122 k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~ge-----vp~Lf~~ee~~~i~~~~~~~~ 182 (1637)
.+.+......++.-|+++++.+....+ ..|.||..=| +--+|...+...|...++..+
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~Lt~~---A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRc 170 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHMLSTS---AWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRC 170 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHhCCHH---HHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhh
Confidence 233344445556667888887665432 2455555322 112334445555555444433
No 58
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.00 E-value=0.074 Score=72.37 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=59.0
Q ss_pred hhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhh----------ccccceEEEecc-----ccCcchhhhHHHHHHHH
Q psy2649 64 ICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFI----------STLEPFQIQLKK-----NYGIPDLKIDLASLYLK 127 (1637)
Q Consensus 64 i~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~----------~~~~~~~i~~~~-----~y~~~~f~~dLk~~~~~ 127 (1637)
|.|+..+|.. ..+|++|+|++|+||+++++-.|.- .++.++.++++. .| ..+|.+.||.++..
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~-~g~~e~~l~~~l~~ 260 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY-RGEFEERLKAVLNE 260 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh-hhhHHHHHHHHHHH
Confidence 6777777755 6699999999999999998865553 367788776543 22 25788899999988
Q ss_pred hhcccccEEEEecccc
Q psy2649 128 AGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 128 ag~~~~~~v~l~~d~~ 143 (1637)
+.-.+.+++++++|-+
T Consensus 261 ~~~~~~~~ILfIDEih 276 (852)
T TIGR03346 261 VTKSEGQIILFIDELH 276 (852)
T ss_pred HHhcCCCeEEEeccHH
Confidence 7544567888877744
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.00 E-value=0.064 Score=71.86 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=66.3
Q ss_pred hhhhhhhhhhhhhhh-------cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcch-------------
Q psy2649 57 FEDAMSHICRINRIM-------EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPD------------- 116 (1637)
Q Consensus 57 f~~~i~hi~ri~RvL-------~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~------------- 116 (1637)
-+++++.+++.-+.. ..|.|+.|++|++|+||+.++|..|...++.++.++++. |....
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se-~~~~~~~~~lig~~~gyv 537 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSE-YMEKHTVSRLIGAPPGYV 537 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCch-hhhcccHHHHhcCCCCCc
Confidence 355666666554443 248899999999999999999999999999888887642 21100
Q ss_pred -h--hhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 117 -L--KIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 117 -f--~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
+ ...|.+++++ +...|++++|-+-.++.+...+-.+|..|.++
T Consensus 538 g~~~~~~l~~~~~~----~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~ 583 (731)
T TIGR02639 538 GFEQGGLLTEAVRK----HPHCVLLLDEIEKAHPDIYNILLQVMDYATLT 583 (731)
T ss_pred ccchhhHHHHHHHh----CCCeEEEEechhhcCHHHHHHHHHhhccCeee
Confidence 0 0113333322 23367888887766676666666666666654
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.97 E-value=0.053 Score=69.81 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=47.0
Q ss_pred hhhhhcCCC-Cce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhH
Q psy2649 67 INRIMEAPR-GNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKID 120 (1637)
Q Consensus 67 i~RvL~~p~-gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~d 120 (1637)
+.+.+...+ +|+ |+.|+.|+||+|++|..|...+| ++++++...+.++ ++
T Consensus 28 L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gV----d~ 103 (709)
T PRK08691 28 LQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGI----DN 103 (709)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCH----HH
Confidence 344444433 676 88999999999999977765444 2344444444443 45
Q ss_pred HHHHHHHh---hcccccEEEEecccccc
Q psy2649 121 LASLYLKA---GLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 121 Lk~~~~~a---g~~~~~~v~l~~d~~i~ 145 (1637)
+|+++..+ -..++.-|++|+|.+..
T Consensus 104 IRelle~a~~~P~~gk~KVIIIDEad~L 131 (709)
T PRK08691 104 IREVLENAQYAPTAGKYKVYIIDEVHML 131 (709)
T ss_pred HHHHHHHHHhhhhhCCcEEEEEECcccc
Confidence 66665543 23456678888886543
No 61
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.96 E-value=0.14 Score=63.10 Aligned_cols=35 Identities=31% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEec
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK 109 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~ 109 (1637)
.||+||+|++||||++++|..|...+..+..++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~ 150 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADAT 150 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechh
Confidence 58999999999999999999998888777666543
No 62
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.95 E-value=0.083 Score=71.67 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=57.2
Q ss_pred hhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEecc-----ccCcchhhhHHHHHHHH
Q psy2649 64 ICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKK-----NYGIPDLKIDLASLYLK 127 (1637)
Q Consensus 64 i~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~-----~y~~~~f~~dLk~~~~~ 127 (1637)
|.|+..+|.. ...|++|+|++|+|||++++-.|.-. ++.+++++++. .| ..+|.+-||.++..
T Consensus 188 i~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~-~ge~e~rl~~i~~~ 266 (821)
T CHL00095 188 IERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY-RGEFEERLKRIFDE 266 (821)
T ss_pred HHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC-ccHHHHHHHHHHHH
Confidence 4455555554 56799999999999999987666543 57889888542 33 46899999999987
Q ss_pred hhcccccEEEEecccc
Q psy2649 128 AGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 128 ag~~~~~~v~l~~d~~ 143 (1637)
+ ....+++++++|-+
T Consensus 267 ~-~~~~~~ILfiDEih 281 (821)
T CHL00095 267 I-QENNNIILVIDEVH 281 (821)
T ss_pred H-HhcCCeEEEEecHH
Confidence 7 34566777766643
No 63
>CHL00176 ftsH cell division protein; Validated
Probab=93.68 E-value=0.083 Score=68.77 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=57.6
Q ss_pred hhhhhhhhhhhhhhhcCCC----------CceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHH
Q psy2649 57 FEDAMSHICRINRIMEAPR----------GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASL 124 (1637)
Q Consensus 57 f~~~i~hi~ri~RvL~~p~----------gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~ 124 (1637)
.+++.+.+..+.+.|..|. .++||.|++||||++++|-.|.-.+..++.+..+.-.. ...=...++.+
T Consensus 188 ~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~l 267 (638)
T CHL00176 188 IEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDL 267 (638)
T ss_pred hHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHH
Confidence 3455555555555555543 36999999999999999999999998888775432000 00011346667
Q ss_pred HHHhhcccccEEEEeccccc
Q psy2649 125 YLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i 144 (1637)
+..| -.+.|++++++|-+-
T Consensus 268 F~~A-~~~~P~ILfIDEID~ 286 (638)
T CHL00176 268 FKKA-KENSPCIVFIDEIDA 286 (638)
T ss_pred HHHH-hcCCCcEEEEecchh
Confidence 7666 467788888887543
No 64
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.54 E-value=0.18 Score=67.85 Aligned_cols=70 Identities=20% Similarity=0.365 Sum_probs=51.8
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
++.|+| +||.|++||||++++|-.|..+++.++.+..+. .| +.+=...++.++..| -...+++++++|-+
T Consensus 484 ~~~~~g-iLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~-vGese~~i~~~f~~A-~~~~p~iifiDEid 556 (733)
T TIGR01243 484 IRPPKG-VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW-VGESEKAIREIFRKA-RQAAPAIIFFDEID 556 (733)
T ss_pred CCCCce-EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc-cCcHHHHHHHHHHHH-HhcCCEEEEEEChh
Confidence 344555 888999999999999999999999999886432 22 112244688888888 45677888887754
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.39 E-value=2 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.4
Q ss_pred CceEEEeecCCchhhHHhHHHhhc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+-.+++|++|+||+|+.+...|..
T Consensus 29 ~~~~i~G~Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 29 PIILIGGLNGAGKTTLLDAIQLAL 52 (650)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 346778999999999999888865
No 66
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.13 Score=65.98 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=44.8
Q ss_pred CCce-EEEeecCCchhhHHhHHHhhcccc------------------------ceEEEeccccCcchhhhHHHHHHHHh-
Q psy2649 75 RGNA-LLVGVGGSGKQSLSRLSAFISTLE------------------------PFQIQLKKNYGIPDLKIDLASLYLKA- 128 (1637)
Q Consensus 75 ~gh~-lLvG~~GsGr~sl~rlaa~~~~~~------------------------~~~i~~~~~y~~~~f~~dLk~~~~~a- 128 (1637)
-.|+ |+.|++|+||+|++|..|...+|+ +++++...+-+ .+++|+++..+
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~----vd~ir~l~~~~~ 112 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQ----VDAMRELLDNAQ 112 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCC----HHHHHHHHHHHh
Confidence 4787 688999999999999988776662 44444333333 34566555443
Q ss_pred --hcccccEEEEecccccc
Q psy2649 129 --GLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 129 --g~~~~~~v~l~~d~~i~ 145 (1637)
...++.-|++++|.+-.
T Consensus 113 ~~p~~~~~kVvIIDEad~l 131 (527)
T PRK14969 113 YAPTRGRFKVYIIDEVHML 131 (527)
T ss_pred hCcccCCceEEEEcCcccC
Confidence 35567778888886544
No 67
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.29 E-value=0.18 Score=61.34 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=40.9
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEec----cccCcchhhhHHHHHHHHh
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK----KNYGIPDLKIDLASLYLKA 128 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~a 128 (1637)
.+|+||+|++|+||++++|..|-..+..++.++.+ .+|.-.+-.+-++.++..|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999765 3454434344455554444
No 68
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.26 E-value=0.24 Score=61.05 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
|..++||.|++||||++++|..|.-.+..++.+..+. .| ..+-...++.++..| -...|++++++|-+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~-~ge~~~~lr~lf~~A-~~~~P~ILfIDEID 248 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY-LGEGPRMVRDVFRLA-RENAPSIIFIDEVD 248 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh-cchhHHHHHHHHHHH-HhcCCeEEEEECHh
Confidence 5567999999999999999999999999888775321 11 112223466777666 35677777777743
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.096 Score=67.81 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=63.0
Q ss_pred hhhhhcCC-CCc-eEEEeecCCchhhHHhHHHhhccccc--------------------------------eEEEecccc
Q psy2649 67 INRIMEAP-RGN-ALLVGVGGSGKQSLSRLSAFISTLEP--------------------------------FQIQLKKNY 112 (1637)
Q Consensus 67 i~RvL~~p-~gh-~lLvG~~GsGr~sl~rlaa~~~~~~~--------------------------------~~i~~~~~y 112 (1637)
+.+.++.. -+| .|+.|+.|+||+|+++.-|...+|+. ..++.....
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~ 107 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN 107 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccC
Confidence 55556553 367 55789999999999998887777732 112211112
Q ss_pred CcchhhhHHHHHHHHh---hcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcCC
Q psy2649 113 GIPDLKIDLASLYLKA---GLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 113 ~~~~f~~dLk~~~~~a---g~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~~ 182 (1637)
+ .++++.+.... ...+..-|++++|.+-... +..|.||..=|-| =+|..++..+|+..++..+
T Consensus 108 ~----vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc 178 (620)
T PRK14954 108 S----VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRC 178 (620)
T ss_pred C----HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---HHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhc
Confidence 2 25566655444 5666677788888655432 2245555532222 2344456666666555443
No 70
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.19 E-value=0.15 Score=59.49 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=41.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc-------cccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS-------TLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~-------~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..+|++|.|++||||||++|..|... ...++.+..+. .| ..+....+++++.+|. ..|++++|.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-~g~~~~~~~~~~~~a~----~~VL~IDE~~ 115 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-IGHTAQKTREVIKKAL----GGVLFIDEAY 115 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-ccchHHHHHHHHHhcc----CCEEEEechh
Confidence 45899999999999999999998753 12333332111 11 1223455677777762 2477777754
Q ss_pred c
Q psy2649 144 V 144 (1637)
Q Consensus 144 i 144 (1637)
-
T Consensus 116 ~ 116 (261)
T TIGR02881 116 S 116 (261)
T ss_pred h
Confidence 3
No 71
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.15 E-value=0.12 Score=63.98 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=49.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
|..++||.|++||||++++|-.|.-.+..++.+..+. .| ..+...-++.++..|. .+.+.+++++|-+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~-~g~~~~~i~~~f~~a~-~~~p~IlfiDEiD~ 235 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF-IGEGARLVRELFELAR-EKAPSIIFIDEIDA 235 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh-ccchHHHHHHHHHHHH-hcCCeEEEEechhh
Confidence 4567999999999999999999999999888775432 11 1122334667777764 45677777777543
No 72
>KOG0730|consensus
Probab=93.10 E-value=0.21 Score=62.81 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=75.5
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
...++.-.|+++..|++.+. ..+.|-....|.=-.|-.-+||-|++||||++++|-.|..+++.+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~---------------~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVE---------------WPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred ChhhccCHHHHHHHHHHHHh---------------hhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 35666777888888876554 456666666676556666689999999999999999999999999
Q ss_pred eEEE----eccccCcchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 104 FQIQ----LKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 104 ~~i~----~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
+.+. .++=|+.+ ...++.++.+|- +.-|++++|++
T Consensus 497 lsvkgpEL~sk~vGeS--Er~ir~iF~kAR-~~aP~IiFfDE 535 (693)
T KOG0730|consen 497 LSVKGPELFSKYVGES--ERAIREVFRKAR-QVAPCIIFFDE 535 (693)
T ss_pred eeccCHHHHHHhcCch--HHHHHHHHHHHh-hcCCeEEehhh
Confidence 9994 55555543 457999999993 45666666655
No 73
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.02 E-value=0.1 Score=64.74 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=61.6
Q ss_pred hhhhhcCCC-Cc-eEEEeecCCchhhHHhHHHhhcccc--------------------------------ceEEEecccc
Q psy2649 67 INRIMEAPR-GN-ALLVGVGGSGKQSLSRLSAFISTLE--------------------------------PFQIQLKKNY 112 (1637)
Q Consensus 67 i~RvL~~p~-gh-~lLvG~~GsGr~sl~rlaa~~~~~~--------------------------------~~~i~~~~~y 112 (1637)
+.+.++..+ .| .|+.|++|+||+|+++.-|....|+ ++.++.....
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~ 107 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN 107 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccC
Confidence 344455432 67 5578999999999999988777663 1222211111
Q ss_pred CcchhhhHHHHHHHHh---hcccccEEEEeccccccccceeeeehhhhccCCC-----CCCCCchHHHHHHHhhhcC
Q psy2649 113 GIPDLKIDLASLYLKA---GLKNAGIMFLMTDSQVADEKFLVIINDMLASGEV-----PDLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 113 ~~~~f~~dLk~~~~~a---g~~~~~~v~l~~d~~i~~~~fle~in~lL~~gev-----p~Lf~~ee~~~i~~~~~~~ 181 (1637)
+ .++++++...+ ...++.-|++++|.+-.... ..|.||..=|= -=+|..++...+...++..
T Consensus 108 ~----id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~---~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR 177 (397)
T PRK14955 108 S----VDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA---AFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR 177 (397)
T ss_pred C----HHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH---HHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHH
Confidence 2 35566655555 66777788888887655431 23344432111 1234455666666555533
No 74
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.95 E-value=0.11 Score=67.00 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=52.8
Q ss_pred CCce-EEEeecCCchhhHHhHHHhhcc------------------------ccceEEEeccccCcchhhhHHHHHHHHhh
Q psy2649 75 RGNA-LLVGVGGSGKQSLSRLSAFIST------------------------LEPFQIQLKKNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 75 ~gh~-lLvG~~GsGr~sl~rlaa~~~~------------------------~~~~~i~~~~~y~~~~f~~dLk~~~~~ag 129 (1637)
.+|+ |+.|+.|+||+|++|..|.-.+ .++++++...+-++.+.++ ++.-+..+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p 115 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAP 115 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCc
Confidence 3786 4599999999999998876544 3566666655555544443 333344445
Q ss_pred cccccEEEEeccccccccceeeeehhhhcc
Q psy2649 130 LKNAGIMFLMTDSQVADEKFLVIINDMLAS 159 (1637)
Q Consensus 130 ~~~~~~v~l~~d~~i~~~~fle~in~lL~~ 159 (1637)
..++.-|+++++.+.... +..|.||.+
T Consensus 116 ~~~~~kViIIDE~~~Lt~---~a~naLLKt 142 (559)
T PRK05563 116 SEAKYKVYIIDEVHMLST---GAFNALLKT 142 (559)
T ss_pred ccCCeEEEEEECcccCCH---HHHHHHHHH
Confidence 677788889888665433 246666654
No 75
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.82 E-value=0.11 Score=63.06 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=23.0
Q ss_pred hhcCCC-CceEEEeecCCchhhHHhHHHhhc
Q psy2649 70 IMEAPR-GNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 70 vL~~p~-gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.++.++ +|+++.|++||||+++++..+.-.
T Consensus 30 ~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 30 AVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 334433 599999999999999998766644
No 76
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.79 E-value=0.31 Score=59.30 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=40.2
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEec----cccCcchhhhHHHHHHHHh
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK----KNYGIPDLKIDLASLYLKA 128 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~a 128 (1637)
.+|+||+|++|+||++++|..|...+..++.++.+ .+|.-.+-.+-++.++..|
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999855 2343223333455544444
No 77
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.76 E-value=0.1 Score=66.77 Aligned_cols=67 Identities=24% Similarity=0.241 Sum_probs=47.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
.++||.|++||||++++|-.|.-.+..++.+..+.-.+ ...=...++.++..| -...|.+++++|-+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a-~~~~p~Il~iDEid 157 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA-KKNAPCIIFIDEID 157 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHH-HhcCCCEEEEechh
Confidence 45999999999999999999999999988775431000 001124577777776 44667788877743
No 78
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=0.16 Score=66.12 Aligned_cols=65 Identities=20% Similarity=0.331 Sum_probs=41.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccc--------------------------cceEEEeccccCcchhhhHHHHHHHHh--
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTL--------------------------EPFQIQLKKNYGIPDLKIDLASLYLKA-- 128 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~--------------------------~~~~i~~~~~y~~~~f~~dLk~~~~~a-- 128 (1637)
|+|+.|+.|+||+|++|..|...+| +++++....+.++. ++|+++..+
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd----~IReii~~a~~ 115 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVD----NIRELIERAQF 115 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHH----HHHHHHHHHhh
Confidence 4567899999999999988877766 34444433333443 444444433
Q ss_pred -hcccccEEEEecccccc
Q psy2649 129 -GLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 129 -g~~~~~~v~l~~d~~i~ 145 (1637)
.+.+..-|+++++.+-.
T Consensus 116 ~p~~~~~KViIIDEad~L 133 (620)
T PRK14948 116 APVQARWKVYVIDECHML 133 (620)
T ss_pred ChhcCCceEEEEECcccc
Confidence 34566677888875433
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.67 E-value=0.16 Score=62.42 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=41.4
Q ss_pred CCceE-EEeecCCchhhHHhHHHhhcccc-----------------------ceEEEec-cccCcchhhhHHHHHHHHh-
Q psy2649 75 RGNAL-LVGVGGSGKQSLSRLSAFISTLE-----------------------PFQIQLK-KNYGIPDLKIDLASLYLKA- 128 (1637)
Q Consensus 75 ~gh~l-LvG~~GsGr~sl~rlaa~~~~~~-----------------------~~~i~~~-~~y~~~~f~~dLk~~~~~a- 128 (1637)
-+|++ +.|++|+||+++++.-|-...|+ ++.+... ..+++ +++|++...+
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i----~~iR~l~~~~~ 110 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGV----DEVRELVTIAA 110 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCH----HHHHHHHHHHH
Confidence 36755 67999999999998876544332 2222221 22333 4455544433
Q ss_pred --hcccccEEEEecccccccc
Q psy2649 129 --GLKNAGIMFLMTDSQVADE 147 (1637)
Q Consensus 129 --g~~~~~~v~l~~d~~i~~~ 147 (1637)
...++.-|++++|.+-..+
T Consensus 111 ~~p~~~~~kViiIDead~m~~ 131 (394)
T PRK07940 111 RRPSTGRWRIVVIEDADRLTE 131 (394)
T ss_pred hCcccCCcEEEEEechhhcCH
Confidence 3456667888888766644
No 80
>KOG2028|consensus
Probab=92.67 E-value=0.19 Score=58.31 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=43.1
Q ss_pred CceEEEeecCCchhhHHhHHHhhcccc---ceEEEeccccCcchhhhHHHHHHHHh----hcccccEEEEeccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLE---PFQIQLKKNYGIPDLKIDLASLYLKA----GLKNAGIMFLMTDS 142 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~---~~~i~~~~~y~~~~f~~dLk~~~~~a----g~~~~~~v~l~~d~ 142 (1637)
-.|+|-|++|+||+||+|+-+....-. ++++..++. +. .|+|.++..| -..++++++++++-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-~t----~dvR~ife~aq~~~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-KT----NDVRDIFEQAQNEKSLTKRKTILFIDEI 231 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-ch----HHHHHHHHHHHHHHhhhcceeEEEeHHh
Confidence 578999999999999999998877654 555544432 23 4555555554 34567788887763
No 81
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.37 Score=61.88 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=57.8
Q ss_pred hhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC---cchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 70 IMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG---IPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 70 vL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~---~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
....|...+||.|++||||+.|++-+|.-.+..++.+... .|. +.+-..-+++++.+| -+..|+++++++-
T Consensus 271 ~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek~ir~~F~~A-~~~~p~iiFiDEi 344 (494)
T COG0464 271 LGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEKNIRELFEKA-RKLAPSIIFIDEI 344 (494)
T ss_pred cCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHHHHHHHHHHHH-HcCCCcEEEEEch
Confidence 4456777999999999999999999999999999999866 443 345666789999888 4678888887774
No 82
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.62 E-value=0.15 Score=64.63 Aligned_cols=104 Identities=20% Similarity=0.339 Sum_probs=64.8
Q ss_pred CCce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhHHHHHHHHhh
Q psy2649 75 RGNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 75 ~gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~dLk~~~~~ag 129 (1637)
-+|+ |+.|+.|+||+|++|+.|-..+| ++++++...+-++.+.+ ++++.+....
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P 115 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTP 115 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCc
Confidence 3676 56899999999999998876554 34555444444444443 3566666666
Q ss_pred cccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcCC
Q psy2649 130 LKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 130 ~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~~ 182 (1637)
..++.-|+++++.+.... +..|.||..=|-| -+|...+.+.+...++..+
T Consensus 116 ~~~~~KVvIIDEad~Lt~---~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc 170 (486)
T PRK14953 116 IKGKYKVYIIDEAHMLTK---EAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRC 170 (486)
T ss_pred ccCCeeEEEEEChhhcCH---HHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhc
Confidence 778888999999776543 2245555433322 2344456666665555443
No 83
>KOG0994|consensus
Probab=92.57 E-value=0.5 Score=61.63 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=56.7
Q ss_pred Chhhhhcc----CCCcchhhhhhheeeeeeccCCCCCCCcCccchhhhccccCCcCcchhhhhhheeeeEEEEecchhHH
Q psy2649 357 NLTELKAL----KAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVINIITFYNVWTFVEPKRK 432 (1637)
Q Consensus 357 dl~Eirs~----~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k~~~i~~~a~~L~~WV~Ai~~Y~~v~~~v~P~~~ 432 (1637)
-|.+||-| ..-|+.|+.|-+.|+-|=-. -++.+|..+ +.-+..=|.++-+-..|+.+.++-..
T Consensus 1476 Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp----------~tpeqi~~L---~~~I~e~v~sL~nVd~IL~~T~~di~ 1542 (1758)
T KOG0994|consen 1476 LIQQVRDFLTQPDADPDSIEEVAEEVLALELP----------LTPEQIQQL---TGEIQERVASLPNVDAILSRTKGDIA 1542 (1758)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC----------CCHHHHHHH---HHHHHHHHHhcccHHHHHHhhhhhHH
Confidence 35566666 45577888888888765211 122222211 11112222222222333445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAV 473 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~ 473 (1637)
+.+.++.+..+|+++-+..+...+.+.+.|++-...+.++.
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~ 1583 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQ 1583 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777666666666666666555554444
No 84
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.55 E-value=1.3 Score=63.39 Aligned_cols=321 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhccccc-------EEEEeccc
Q psy2649 70 IMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAG-------IMFLMTDS 142 (1637)
Q Consensus 70 vL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~-------~v~l~~d~ 142 (1637)
.|....|.-+++|+.||||+++.--..|..|.......-... ++.++.. |..+.+ ++|--++.
T Consensus 18 ~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~---------~~~~i~~-~~~~~~~~~~~v~~~f~~~~~ 87 (1164)
T TIGR02169 18 VIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAER---------LSDLISN-GKNGQSGNEAYVTVTFKNDDG 87 (1164)
T ss_pred EEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhh---------HHHhhcc-cccCCCCceEEEEEEEEcCCC
Q ss_pred cccccceeeeehhhhccCCCCCCCCchHHHHHHHhhhcCCCccccCCCCcccccchhhHHHHhhccCCCccccccCccee
Q psy2649 143 QVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPEIPLTADLDPLTMLTDDATIAFWNNEGLPNDRMSTENATI 222 (1637)
Q Consensus 143 ~i~~~~fle~in~lL~~gevp~Lf~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~f~~~vL~v~~~s~~~~~~ 222 (1637)
.+.++..+.+--..-.+|.+...|-.......-.
T Consensus 88 ~~~~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~---------------------------------------------- 121 (1164)
T TIGR02169 88 KFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLSE---------------------------------------------- 121 (1164)
T ss_pred CCCCcEEEEEEEEEcCCCCcceEEECCccccHHH----------------------------------------------
Q ss_pred EecccccccccChhhhhhchHHHHHHHHhhhHhhhhHHHhhccccccCCCchhHHHHHHHH--HHHHhhhhhhhhhhhhh
Q psy2649 223 LVNSQRWPLMIDPQEVLRKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLY--AKLLKIKFDDNKSGITR 300 (1637)
Q Consensus 223 ~~~~~~~P~l~~p~~al~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~TP~~fl~~l~~f--~~l~~~k~~~l~~~~~~ 300 (1637)
+..++..+......+.-.+.....+....+|..-.+++... ...|..+..+....+.+
T Consensus 122 --------------------~~~~l~~~~~~~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~ 181 (1164)
T TIGR02169 122 --------------------IHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEE 181 (1164)
T ss_pred --------------------HHHHHHHcCCCcCcceEEecchHHHHHCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHhhhc--------------------------------------------------hhhhhhHHHhHHhhhhhhh
Q psy2649 301 FQNGLQKLVSL--------------------------------------------------GNEEKKVRAIEEDVSYKQK 330 (1637)
Q Consensus 301 l~~gL~kL~e~--------------------------------------------------~~ee~k~~~~~~e~~~~~~ 330 (1637)
...-+..+... ..+-........++....+
T Consensus 182 ~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~ 261 (1164)
T TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS 261 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHhhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhhhccccCCcCcc
Q psy2649 331 VCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGL 410 (1637)
Q Consensus 331 ~~~~~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k~~~i~~~a~~L 410 (1637)
+.+.++....-.+.++...+..+..+.+..++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------------------- 294 (1164)
T TIGR02169 262 ELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE----------------------------------------------- 294 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH-----------------------------------------------
Q ss_pred hhhhhhheeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 411 CAWVINIITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 411 ~~WV~Ai~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
.+......+.-.+.++..++.++...+.++...++++.+++++++.++.++++...+...++.++...+..+
T Consensus 295 --------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (1164)
T TIGR02169 295 --------KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366 (1164)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHhhhcccccccchHHHHHHHhhccccC
Q psy2649 491 DLADRLVNGLASENVRWKDSVLGLQQSALTL 521 (1637)
Q Consensus 491 ~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~l 521 (1637)
+....-+..+..+...-......++.++..+
T Consensus 367 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l 397 (1164)
T TIGR02169 367 EDLRAELEEVDKEFAETRDELKDYREKLEKL 397 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 85
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.37 E-value=0.29 Score=57.16 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCch----------h-----------------------HHH
Q psy2649 1048 TTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQ----------E-----------------------VIA 1094 (1637)
Q Consensus 1048 ~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq----------~-----------------------~~a 1094 (1637)
..|+++.-+||+==|.....+|+..|. .+..+...... + ...
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 458888888887777777777776552 23333211110 0 000
Q ss_pred HhHHHhhhccCCEEEEehhhhH-HhhhhcHHHHHHhhh------------cCCCCceeEEEecCCCCCCCcccccccccc
Q psy2649 1095 EETIQIASTKGHWAILQNVHLV-KNWLPTLDKKMEASF------------EKPHKNYRLFISAEPASDPEYHIIPQGVLD 1161 (1637)
Q Consensus 1095 ~~~l~~a~~~G~WvlL~N~HL~-~~wl~~Le~~l~~~~------------~~~h~~FRLwLts~~~~~~~~~~fP~~lLq 1161 (1637)
...|..|+.+|+||+|..++-+ ++....|-..++.-. ...|++||++.|+.+........+|..++.
T Consensus 96 ~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 96 DNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred CchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 2345678899999999999865 444444555554310 026899999999987643333457889999
Q ss_pred ccccccCCCCc
Q psy2649 1162 SSIKITNEPPT 1172 (1637)
Q Consensus 1162 ~s~kv~~E~p~ 1172 (1637)
++..+..+.|.
T Consensus 176 R~~~i~i~~P~ 186 (262)
T TIGR02640 176 RLITIFMDYPD 186 (262)
T ss_pred hcEEEECCCCC
Confidence 99888887775
No 86
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.27 E-value=0.23 Score=67.08 Aligned_cols=66 Identities=23% Similarity=0.169 Sum_probs=46.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchh-----------hhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDL-----------KIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f-----------~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+++|+|++|+|||+++|..|...+..++.+.++...+..++ ...+.+++..|+.. .+ |++++|-+-
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~-~~-villDEidk 425 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTK-NP-LFLLDEIDK 425 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcC-CC-EEEEechhh
Confidence 79999999999999999999999999998876532222221 12356677777543 33 667777443
No 87
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.18 E-value=0.17 Score=62.96 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=46.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
|..++||.|++||||++++|..|...+..++.+..+. .|. .+-...++.++..|. .+.+++++++|
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~-Ge~~~~vr~lF~~A~-~~~P~ILfIDE 284 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYL-GDGPKLVRELFRVAE-ENAPSIVFIDE 284 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhc-chHHHHHHHHHHHHH-hCCCcEEeHHH
Confidence 4556899999999999999999999998888775332 111 111223666666663 46677777777
No 88
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.07 E-value=0.23 Score=61.14 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
..+++++.|++|+|||++++.++.-
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999888754
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.06 E-value=0.12 Score=68.59 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=54.3
Q ss_pred hhhhhhhhhhhhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhh----------ccccceEEEecc---ccC-cchhh
Q psy2649 54 LVLFEDAMSHICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFI----------STLEPFQIQLKK---NYG-IPDLK 118 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~----------~~~~~~~i~~~~---~y~-~~~f~ 118 (1637)
++=-++-+. ++.++|.. -..|.||+|++|+||+++++-.|+- .++.++.+.++. +.. ..+|.
T Consensus 188 liGR~~ei~---~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 188 LIGREKELE---RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_pred CcCCCHHHH---HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence 444444444 44445554 4689999999999999999887753 466777664332 111 24788
Q ss_pred hHHHHHHHHhhcccccEEEEecc
Q psy2649 119 IDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 119 ~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
+-++.++..+- +..+.+++++|
T Consensus 265 ~rl~~l~~~l~-~~~~~ILfIDE 286 (758)
T PRK11034 265 KRFKALLKQLE-QDTNSILFIDE 286 (758)
T ss_pred HHHHHHHHHHH-hcCCCEEEecc
Confidence 88898887663 34456666665
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.05 E-value=0.17 Score=65.45 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=69.3
Q ss_pred hhhhhhhhhhhhhhhhhhhcCCC-Cc-eEEEeecCCchhhHHhHHHhhcccc----------------------------
Q psy2649 53 NLVLFEDAMSHICRINRIMEAPR-GN-ALLVGVGGSGKQSLSRLSAFISTLE---------------------------- 102 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL~~p~-gh-~lLvG~~GsGr~sl~rlaa~~~~~~---------------------------- 102 (1637)
+++-.+.++.++.+.- ...+ .| +||.|+.|+||+|++|..|...+|+
T Consensus 25 dliGq~~~v~~L~~~~---~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 25 DLIGQEAMVRTLTNAF---ETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 3445555555554433 2222 44 7789999999999999988876654
Q ss_pred -ceEEEeccccCcchhhhHHHHHHHH---hhcccccEEEEeccccccccceeeeehhhhcc-----CCCCCCCCchHHHH
Q psy2649 103 -PFQIQLKKNYGIPDLKIDLASLYLK---AGLKNAGIMFLMTDSQVADEKFLVIINDMLAS-----GEVPDLFTDDEIEN 173 (1637)
Q Consensus 103 -~~~i~~~~~y~~~~f~~dLk~~~~~---ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~-----gevp~Lf~~ee~~~ 173 (1637)
+++++..+..++ +|+|.++.. ..+.++.-|+++++.+.... +..|.||.+ +.+-=+|...+.++
T Consensus 102 Dv~e~~a~s~~gv----d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 102 DVLEMDAASHTGV----DDIREIIESVRYRPVSARYKVYIIDEVHMLST---AAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred ceEEecccccCCH----HHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---HHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 233333333344 345554433 34556666778888665543 235666643 23333566666666
Q ss_pred HHHhhhcCC
Q psy2649 174 IVNNIAAEP 182 (1637)
Q Consensus 174 i~~~~~~~~ 182 (1637)
+...++..+
T Consensus 175 ll~tI~SRc 183 (598)
T PRK09111 175 VPVTVLSRC 183 (598)
T ss_pred hhHHHHhhe
Confidence 665555444
No 91
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.95 E-value=0.23 Score=59.76 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=41.3
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc-----cceEEEeccccCcchhhhHHHHHHHHhhcc-cccEEEEecccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL-----EPFQIQLKKNYGIPDLKIDLASLYLKAGLK-NAGIMFLMTDSQ 143 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~-----~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~-~~~~v~l~~d~~ 143 (1637)
.|++|.|++|+||+++++..+.-... .++.+..+...+...+++.++......-.. +.+-+++++|.+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~ 112 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEAD 112 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcc
Confidence 47999999999999999877765422 234443333333444556666655443232 334566667653
No 92
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.85 E-value=0.16 Score=62.50 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..++||.|++||||++++|..|.-.+..++.+..+. .| ..+-..-++.++..|. .+.+++++++|-+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~-~g~~~~~i~~~f~~a~-~~~p~il~iDEiD 225 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY-IGEGARLVREIFELAK-EKAPSIIFIDEID 225 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh-hhHHHHHHHHHHHHHH-hcCCcEEEhhhhh
Confidence 345999999999999999999999998887764221 11 1111223566666663 4567777777643
No 93
>KOG0733|consensus
Probab=91.75 E-value=0.22 Score=61.72 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=52.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEE---eccccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ---LKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~---~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+-+||.|++||||+-|+|-+|.=++..|..+. +-..| +.+=.--+|.++++| =...|+|++|++-+-
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY-VGESErAVR~vFqRA-R~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY-VGESERAVRQVFQRA-RASAPCVIFFDEIDA 615 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH-hhhHHHHHHHHHHHh-hcCCCeEEEecchhh
Confidence 44889999999999999999999999999885 22222 223345699999999 457899999887543
No 94
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.54 E-value=0.29 Score=63.09 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=46.7
Q ss_pred hhhhhcCC-CCc-eEEEeecCCchhhHHhHHHhhcccc------------------------ceEEEeccccCcchhhhH
Q psy2649 67 INRIMEAP-RGN-ALLVGVGGSGKQSLSRLSAFISTLE------------------------PFQIQLKKNYGIPDLKID 120 (1637)
Q Consensus 67 i~RvL~~p-~gh-~lLvG~~GsGr~sl~rlaa~~~~~~------------------------~~~i~~~~~y~~~~f~~d 120 (1637)
+.+.++.. -+| .|+.|+.|+||+|++|.-|....|. ++.+....+.++.++++
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~- 106 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQ- 106 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHH-
Confidence 44444432 356 5678999999999999887766552 33343322334444443
Q ss_pred HHHHHHHhhcccccEEEEeccccccc
Q psy2649 121 LASLYLKAGLKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 121 Lk~~~~~ag~~~~~~v~l~~d~~i~~ 146 (1637)
+++-+......++.-|++++|.+...
T Consensus 107 l~e~~~~~p~~~~~KVvIIDEa~~Ls 132 (563)
T PRK06647 107 IKEEIMFPPASSRYRVYIIDEVHMLS 132 (563)
T ss_pred HHHHHHhchhcCCCEEEEEEChhhcC
Confidence 22222344456777788888865543
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.26 E-value=0.78 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.|++|.|++||||++++|..|...
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 66799999999999999997766544
No 96
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.22 E-value=0.17 Score=61.25 Aligned_cols=44 Identities=32% Similarity=0.279 Sum_probs=39.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcch
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPD 116 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~ 116 (1637)
.-+||+||.|++|+|||+++|-.|...+.+++.|..+.++...|
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d 84 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSD 84 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHH
Confidence 36799999999999999999999999999999999888766443
No 97
>PHA02244 ATPase-like protein
Probab=91.12 E-value=0.16 Score=60.88 Aligned_cols=91 Identities=21% Similarity=0.342 Sum_probs=60.7
Q ss_pred hhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccc-cCc-------chhhhHHHHHHHHhhcccccEE
Q psy2649 65 CRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKN-YGI-------PDLKIDLASLYLKAGLKNAGIM 136 (1637)
Q Consensus 65 ~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~-y~~-------~~f~~dLk~~~~~ag~~~~~~v 136 (1637)
.|+.|++.. +-+++|.|++||||+++++-.|+..+..++.+...-. +.+ ..|. ..-+.+| + .+.-+
T Consensus 110 ~ri~r~l~~-~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~---dgpLl~A-~-~~Ggv 183 (383)
T PHA02244 110 ADIAKIVNA-NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFH---ETPFYEA-F-KKGGL 183 (383)
T ss_pred HHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccccccc---chHHHHH-h-hcCCE
Confidence 366777665 4589999999999999999999999999887752210 000 0111 0122233 1 23457
Q ss_pred EEeccccccccceeeeehhhhccCC
Q psy2649 137 FLMTDSQVADEKFLVIINDMLASGE 161 (1637)
Q Consensus 137 ~l~~d~~i~~~~fle~in~lL~~ge 161 (1637)
++++|-+...++-+..+|.+|..+.
T Consensus 184 LiLDEId~a~p~vq~~L~~lLd~r~ 208 (383)
T PHA02244 184 FFIDEIDASIPEALIIINSAIANKF 208 (383)
T ss_pred EEEeCcCcCCHHHHHHHHHHhccCe
Confidence 8888877777777778888887763
No 98
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.03 E-value=0.14 Score=51.76 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=24.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEEeccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKN 111 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~ 111 (1637)
|+||.|++|+||++++|-.|...+.++-.|+.+.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpd 35 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPD 35 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCC
Confidence 99999999999999999999999999988876643
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.02 E-value=0.26 Score=63.95 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=65.7
Q ss_pred Cce-EEEeecCCchhhHHhHHHhhcccc------------------------ceEEEeccccCcchhhhHHHHHHHHhhc
Q psy2649 76 GNA-LLVGVGGSGKQSLSRLSAFISTLE------------------------PFQIQLKKNYGIPDLKIDLASLYLKAGL 130 (1637)
Q Consensus 76 gh~-lLvG~~GsGr~sl~rlaa~~~~~~------------------------~~~i~~~~~y~~~~f~~dLk~~~~~ag~ 130 (1637)
.|+ |+.|+.|+||+|+++.-|...+|+ +++++...+.++.+.++ |+.-+.....
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~ 116 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRE-LRENVKYLPS 116 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHH-HHHHHHhccc
Confidence 677 789999999999999887665542 55555444555555543 4444444556
Q ss_pred ccccEEEEeccccccccceeeeehhhhcc-----CCCCCCCCchHHHHHHHhhhcCCC
Q psy2649 131 KNAGIMFLMTDSQVADEKFLVIINDMLAS-----GEVPDLFTDDEIENIVNNIAAEPE 183 (1637)
Q Consensus 131 ~~~~~v~l~~d~~i~~~~fle~in~lL~~-----gevp~Lf~~ee~~~i~~~~~~~~~ 183 (1637)
.++.-|+++++.+.... +..|.||.. +.+.=+|...+..+|...++..+.
T Consensus 117 ~~~~KVvIIdev~~Lt~---~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST---NAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ 171 (576)
T ss_pred cCCceEEEEEChhhCCH---HHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhh
Confidence 66677888888665543 235666642 333345566666777766665543
No 100
>KOG0743|consensus
Probab=90.97 E-value=0.3 Score=59.16 Aligned_cols=56 Identities=27% Similarity=0.355 Sum_probs=43.2
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFL 138 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l 138 (1637)
-=||-|++||||+|+.-=-|.-.+|+++-++++.-.. .+|||.+|..+ .++.|++|
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----n~dLr~LL~~t--~~kSIivI 292 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----DSDLRHLLLAT--PNKSILLI 292 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----cHHHHHHHHhC--CCCcEEEE
Confidence 4588999999999997666677789999998875422 35699988766 67776654
No 101
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.91 E-value=0.54 Score=55.64 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=34.2
Q ss_pred hhhhhhhhhcC---CCCceEEEeecCCchhhHHhHHHhh--c--cc-cceEEEeccccCc
Q psy2649 63 HICRINRIMEA---PRGNALLVGVGGSGKQSLSRLSAFI--S--TL-EPFQIQLKKNYGI 114 (1637)
Q Consensus 63 hi~ri~RvL~~---p~gh~lLvG~~GsGr~sl~rlaa~~--~--~~-~~~~i~~~~~y~~ 114 (1637)
++-+|...|.. +.+.+.++|++|+|||+|++-++.- . .| -++-+...+.++.
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~ 63 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL 63 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence 44555555554 6788888999999999999888865 2 22 2344566665554
No 102
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=90.89 E-value=0.35 Score=63.77 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=47.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
|.| ++|+|++||||++++|..|.-.+..++.+..+.-.. ...-...++.++..| -...|++++++|-
T Consensus 185 ~~g-ill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a-~~~~P~IifIDEi 253 (644)
T PRK10733 185 PKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA-KKAAPCIIFIDEI 253 (644)
T ss_pred CCc-EEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH-HhcCCcEEEehhH
Confidence 545 999999999999999999999999988776432110 011223566777666 3456788887774
No 103
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=90.87 E-value=0.52 Score=53.26 Aligned_cols=63 Identities=27% Similarity=0.286 Sum_probs=42.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHh---hccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAF---ISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~---~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
.|..|+||-|..||||+|++|-... -.|..++++ .++ + -.+|-.++....-...+.+++++|-
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev--~k~----~-L~~l~~l~~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEV--SKE----D-LGDLPELLDLLRDRPYKFILFCDDL 115 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEE--CHH----H-hccHHHHHHHHhcCCCCEEEEecCC
Confidence 4899999999999999999987665 335566655 332 1 1335555555545567777777763
No 104
>KOG0738|consensus
Probab=90.64 E-value=0.27 Score=57.87 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=42.0
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhH----HHHHHHHhhc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKID----LASLYLKAGL 130 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~d----Lk~~~~~ag~ 130 (1637)
+.|=--+||+|++||||+-|+|-+|-=|+-+||.+..+. =.+-||-| +|-++..|-.
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst--ltSKwRGeSEKlvRlLFemARf 302 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST--LTSKWRGESEKLVRLLFEMARF 302 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh--hhhhhccchHHHHHHHHHHHHH
Confidence 458888999999999999999999999999999775331 12345533 4444555544
No 105
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.27 E-value=0.13 Score=55.65 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=32.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccc----cceEEEeccccCc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTL----EPFQIQLKKNYGI 114 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~----~~~~i~~~~~y~~ 114 (1637)
.|.|++||+|++|+||+.+++..|-+... .+..++++. |+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~-~~~ 45 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE-YSE 45 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG-HCS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc-ccc
Confidence 48899999999999999999988888875 777777663 443
No 106
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.07 E-value=0.37 Score=64.89 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=50.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEec---cccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK---KNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~---~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
.|..++||.|++||||++++|..|...+..++.+... ..| ..+..+.++.++..| ..+.+.+++++|-+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~-~g~~~~~l~~lf~~a-~~~~p~il~iDEid 281 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY-YGESEERLREIFKEA-EENAPSIIFIDEID 281 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc-ccHHHHHHHHHHHHH-HhcCCcEEEeehhh
Confidence 3556799999999999999999999999888877632 122 123456688888777 35566777777643
No 107
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.02 E-value=0.38 Score=56.15 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=34.8
Q ss_pred hhhhhhhhhcCCCCceEEEeecCCchhhHHh-HHHhhcc--ccceEEE
Q psy2649 63 HICRINRIMEAPRGNALLVGVGGSGKQSLSR-LSAFIST--LEPFQIQ 107 (1637)
Q Consensus 63 hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~r-laa~~~~--~~~~~i~ 107 (1637)
++..+.+.+..++|.++++|..||||+|+.+ +..++.. ..++.++
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 4455677788899999999999999999987 6677754 3455554
No 108
>PRK08118 topology modulation protein; Reviewed
Probab=89.90 E-value=0.47 Score=51.32 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
.++++|++||||+|+++.-+-..++.++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 3688999999999999999999999888775
No 109
>PRK13949 shikimate kinase; Provisional
Probab=89.87 E-value=0.29 Score=53.01 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
+++|+|++||||+|++|..|...++.++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5889999999999999999998898877654
No 110
>PRK13948 shikimate kinase; Provisional
Probab=89.76 E-value=0.38 Score=52.66 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=41.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEec-------------cccCcchhhhHHHHHHHHh
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK-------------KNYGIPDLKIDLASLYLKA 128 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~-------------~~y~~~~f~~dLk~~~~~a 128 (1637)
.|..+++|+|..||||+|+.|..|-..++.++..+.- ..++..-|++--..++..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l 76 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRL 76 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3668999999999999999999999889988876511 2344445665555555554
No 111
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.67 E-value=0.45 Score=60.16 Aligned_cols=69 Identities=16% Similarity=0.339 Sum_probs=43.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccc--------eEEEec-----cccCcchhhhHHHHHHHHhh---cccccEEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEP--------FQIQLK-----KNYGIPDLKIDLASLYLKAG---LKNAGIMF 137 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~--------~~i~~~-----~~y~~~~f~~dLk~~~~~ag---~~~~~~v~ 137 (1637)
|..++||.|++||||++++|..|.-.+..+ +.+.+. ..| ..+....++.++..|. ..+.++++
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~ky-vGete~~ir~iF~~Ar~~a~~g~p~II 293 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKY-VGETERQIRLIFQRAREKASDGRPVIV 293 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccc-cchHHHHHHHHHHHHHHHhhcCCCceE
Confidence 455699999999999999999888765442 112211 112 1233344666655542 34578888
Q ss_pred Eecccc
Q psy2649 138 LMTDSQ 143 (1637)
Q Consensus 138 l~~d~~ 143 (1637)
+|+|-+
T Consensus 294 fIDEiD 299 (512)
T TIGR03689 294 FFDEMD 299 (512)
T ss_pred EEehhh
Confidence 877754
No 112
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.66 E-value=0.45 Score=52.81 Aligned_cols=51 Identities=25% Similarity=0.284 Sum_probs=32.3
Q ss_pred eEEEeecCCchhhH-HhHHHhhccc--cceEEEeccccCcchhhhHHHHHHHHhhc
Q psy2649 78 ALLVGVGGSGKQSL-SRLSAFISTL--EPFQIQLKKNYGIPDLKIDLASLYLKAGL 130 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl-~rlaa~~~~~--~~~~i~~~~~y~~~~f~~dLk~~~~~ag~ 130 (1637)
++|||+.|+||||+ +|||++.... ++--+. .-.|-..- .|.||......|+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~D~~R~ga-~eQL~~~a~~l~v 57 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-ADTYRIGA-VEQLKTYAEILGV 57 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-ESTSSTHH-HHHHHHHHHHHTE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeec-CCCCCccH-HHHHHHHHHHhcc
Confidence 57999999999987 9999997643 322222 22333333 2567776666654
No 113
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=89.48 E-value=1 Score=60.45 Aligned_cols=105 Identities=20% Similarity=0.368 Sum_probs=69.5
Q ss_pred CceEEEEeccc---chhHHHHHHHhcCcEEEEecccccccchhhhhhhhhhhcCcceeEecccccccCCCceeeeeeccc
Q psy2649 590 NKLTVIRLGQK---RVMDQIEKAVMSGFVLLIENIGESVDPVLDNLIGRNLIRKGKVVKIGEKEIDYNPNFKLILHTKLA 666 (1637)
Q Consensus 590 ~~l~v~~~~~~---~~~~~le~ai~~G~~lli~dv~e~~dp~L~~ll~~~~~~~g~~I~ig~~~i~~~p~F~L~l~T~~~ 666 (1637)
.++.++++++. .-.+.|+.|++.|.-|+++|+ .+-|..-+.|.+.+..... +.|++|||||+| .+
T Consensus 145 ~~~~~islG~~~~~~a~~~l~~a~~~G~Wv~L~N~--HL~~~wl~~Le~~l~~~~~---------~~h~~FRL~lt~-~~ 212 (707)
T PF03028_consen 145 KKLQSISLGSGQGPEAEKALKEAAKEGHWVLLQNC--HLAPSWLPQLEKKLESLSP---------EIHPNFRLFLTS-EP 212 (707)
T ss_dssp --EEEEETTSHHHHHHHHHHHHHHHHTSEEEEETG--GGGCCCHHCHHHHHHC-SS---------TTSTT-EEEEEE-ES
T ss_pred hheeecCCCCchHHHHHHHHHHHhcCCeEEEcccc--hhHHHHHHHHHHHHhcccc---------ccccceEEEEEe-cC
Confidence 66899998654 356899999999999999998 4556666666655433221 679999999988 57
Q ss_pred CCCCCccccccceEEEEEecccchhHHHHHHHhhhcCCCHH
Q psy2649 667 NPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKFERPDLE 707 (1637)
Q Consensus 667 ~~~~~p~~~~~~~vInftvt~~~Le~qlL~~vv~~e~PeLe 707 (1637)
.+.+|..+..+...|-|. .+.|+..-|+...-....+.++
T Consensus 213 ~~~~P~~lL~~s~kv~~E-~p~gik~~l~~~~~~~~~~~~~ 252 (707)
T PF03028_consen 213 SPSFPISLLQSSIKVTYE-PPPGIKANLLRTYNSISQDFFE 252 (707)
T ss_dssp STTS-HHHHHCSEEEEE----SSHHHHHHHHHCC--SCCHH
T ss_pred cccCCHHHHHcccceeeC-ChhHHHHHHHHHHHhhhhhhhh
Confidence 888999887777766665 4556777666665554444443
No 114
>KOG0733|consensus
Probab=88.90 E-value=0.67 Score=57.64 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=65.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEec---cccCcchhhhHHHHHHHHhhcccccEEEEecccccccccee
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK---KNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFL 150 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~---~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fl 150 (1637)
|-.-+||-|++||||++|++-.|.=.+..+++|..+ .+|+ .+=.+-|++++..| ..+-|++++|+|=+-.-
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS-GESEkkiRelF~~A-~~~aPcivFiDeIDAI~---- 295 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS-GESEKKIRELFDQA-KSNAPCIVFIDEIDAIT---- 295 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC-cccHHHHHHHHHHH-hccCCeEEEeecccccc----
Confidence 555688999999999999999999999999998633 3443 23457799999888 77889888877644332
Q ss_pred eeehhhhccCCCCCCCCchHHH-HHHHhhhcC
Q psy2649 151 VIINDMLASGEVPDLFTDDEIE-NIVNNIAAE 181 (1637)
Q Consensus 151 e~in~lL~~gevp~Lf~~ee~~-~i~~~~~~~ 181 (1637)
..-+. .+.|++ .|++++-..
T Consensus 296 -------pkRe~----aqreMErRiVaQLlt~ 316 (802)
T KOG0733|consen 296 -------PKREE----AQREMERRIVAQLLTS 316 (802)
T ss_pred -------cchhh----HHHHHHHHHHHHHHHh
Confidence 22232 567777 556655444
No 115
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.86 E-value=0.56 Score=60.86 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=34.5
Q ss_pred hhhhhhhhhhhhhhhhhhc--CCCCc-eEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 54 LVLFEDAMSHICRINRIME--APRGN-ALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~--~p~gh-~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
++..+..+.-+.++.+-.. ...|+ ++|.|++|+||+|++++.|-..++++.+
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4444444443333322222 22344 8889999999999999999998887755
No 116
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=88.74 E-value=0.59 Score=56.20 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=59.6
Q ss_pred hhhhhcC-CCCce-EEEeecCCchhhHHhHHHhhccc--------cceEEEe--ccccCcchhhhHHHHHHHHhhccccc
Q psy2649 67 INRIMEA-PRGNA-LLVGVGGSGKQSLSRLSAFISTL--------EPFQIQL--KKNYGIPDLKIDLASLYLKAGLKNAG 134 (1637)
Q Consensus 67 i~RvL~~-p~gh~-lLvG~~GsGr~sl~rlaa~~~~~--------~~~~i~~--~~~y~~~~f~~dLk~~~~~ag~~~~~ 134 (1637)
+.+.+.+ -..|+ |+.|+.|+||+++++-.|...-| +++.+.. .+.+++.+.++-+..+. .....++.
T Consensus 16 l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~-~~p~~~~~ 94 (313)
T PRK05564 16 IKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVN-KKPYEGDK 94 (313)
T ss_pred HHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHh-cCcccCCc
Confidence 4445554 34788 67899999999998777664333 3334433 23344444443332222 34466777
Q ss_pred EEEEeccccccccceeeeehhhhccC-CCC----CCCCchHHHHHHHhhhcCC
Q psy2649 135 IMFLMTDSQVADEKFLVIINDMLASG-EVP----DLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 135 ~v~l~~d~~i~~~~fle~in~lL~~g-evp----~Lf~~ee~~~i~~~~~~~~ 182 (1637)
-|+++++.+-.++ +--|.||.+= |.| =++..++.+.+...++..+
T Consensus 95 kv~iI~~ad~m~~---~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 95 KVIIIYNSEKMTE---QAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred eEEEEechhhcCH---HHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 7778777544332 2245555422 222 2333444555555555443
No 117
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.63 E-value=0.52 Score=56.82 Aligned_cols=85 Identities=14% Similarity=0.036 Sum_probs=59.1
Q ss_pred CCc-eEEEeecCCchhhHHhHHHhhcc------------------------ccceEEEeccccCcchhhhHHHHHHHHhh
Q psy2649 75 RGN-ALLVGVGGSGKQSLSRLSAFIST------------------------LEPFQIQLKKNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 75 ~gh-~lLvG~~GsGr~sl~rlaa~~~~------------------------~~~~~i~~~~~y~~~~f~~dLk~~~~~ag 129 (1637)
..| +|+.|++|+||++++..-|.-.. .++++++.+...+.+--.+.+|++.....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~ 102 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLS 102 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhc
Confidence 567 78899999999999766555444 48888888877765556677888777665
Q ss_pred cc---cccEEEEeccccccccceeeeehhhhccCCC
Q psy2649 130 LK---NAGIMFLMTDSQVADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 130 ~~---~~~~v~l~~d~~i~~~~fle~in~lL~~gev 162 (1637)
.. +..-|+++++.+-..+ ...|.++-+=|.
T Consensus 103 ~~~~~~~~kviiidead~mt~---~A~nallk~lEe 135 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTE---DAANALLKTLEE 135 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhH---HHHHHHHHHhcc
Confidence 44 5667777777665543 445666654444
No 118
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.56 E-value=0.51 Score=64.23 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=59.7
Q ss_pred hhhhhhhhhhhhhhhhhh----c---CCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHH--
Q psy2649 54 LVLFEDAMSHICRINRIM----E---APRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDL-- 121 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL----~---~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dL-- 121 (1637)
++=-+.++.+|.+--+.. . .|.|+.|++|++|+||++++|.-|... +..++.++++ .|........|
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~s-e~~~~~~~~~LiG 648 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS-EFMEKHSVSRLVG 648 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhH-HhhhhhhHHHHhC
Confidence 445566777777655543 2 345899999999999999998777543 3345555543 22211110000
Q ss_pred ----------HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCC
Q psy2649 122 ----------ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 122 ----------k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gev 162 (1637)
...+..+--.....|++++|-+-.++.....+=.+|..|.+
T Consensus 649 ~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l 699 (857)
T PRK10865 649 APPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRL 699 (857)
T ss_pred CCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCce
Confidence 01122221111225788888765565555444445556655
No 119
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.52 E-value=2.3 Score=37.17 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHH
Q psy2649 434 LAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLG 513 (1637)
Q Consensus 434 l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~ 513 (1637)
+++++..+.+|-.-+.-++.++.++.++-..|+.+...+...++.|+.+.+. |..|...|++.+..
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneq--------------lk~e~~~WQerlrs 71 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQ--------------LKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666665555555555555554443 44567778887776
Q ss_pred Hhhcc
Q psy2649 514 LQQSA 518 (1637)
Q Consensus 514 l~~~~ 518 (1637)
+-.++
T Consensus 72 LLGkm 76 (79)
T COG3074 72 LLGKM 76 (79)
T ss_pred HHhhh
Confidence 54443
No 120
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.46 E-value=0.99 Score=56.16 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=27.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc-----cccceEEEec
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS-----TLEPFQIQLK 109 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~-----~~~~~~i~~~ 109 (1637)
..+++++.|++|+|||++++-++.-. ++.++.++..
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 34779999999999999999777654 3556666543
No 121
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=88.26 E-value=0.68 Score=62.91 Aligned_cols=100 Identities=24% Similarity=0.412 Sum_probs=0.0
Q ss_pred hccCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCc----------------cccccCCchhHHHHhHHHhhhccCC
Q psy2649 1043 RESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNL----------------HNVSLGQGQEVIAEETIQIASTKGH 1106 (1637)
Q Consensus 1043 ~~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l----------------~~iSlG~gq~~~a~~~l~~a~~~G~ 1106 (1637)
+.|...-|+++--+..+--++.|.=+|+..| .++ ..++=..|.-..-+-.|-+|+++|.
T Consensus 883 a~s~~~fP~LiQGpTSSGKTSMI~yla~~tg-----hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy 957 (4600)
T COG5271 883 AASLSNFPLLIQGPTSSGKTSMILYLARETG-----HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY 957 (4600)
T ss_pred HHhhcCCcEEEecCCCCCcchHHHHHHHHhC-----ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc
Q ss_pred EEEEehhhhHHh-hhhcHHHHHHhhhc----------CCCCceeEEEecCCC
Q psy2649 1107 WAILQNVHLVKN-WLPTLDKKMEASFE----------KPHKNYRLFISAEPA 1147 (1637)
Q Consensus 1107 WvlL~N~HL~~~-wl~~Le~~l~~~~~----------~~h~~FRLwLts~~~ 1147 (1637)
|++|.-..|++. -+..|.+++..... .|||+||||-|-.|.
T Consensus 958 WIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNpp 1009 (4600)
T COG5271 958 WIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPP 1009 (4600)
T ss_pred EEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCC
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.98 E-value=0.4 Score=64.97 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=61.8
Q ss_pred hhhhhhhhhhhhhhhhhhh-------cCCCCceEEEeecCCchhhHHhHHHhhc-c--ccceEEEeccccCcchhhhHH-
Q psy2649 53 NLVLFEDAMSHICRINRIM-------EAPRGNALLVGVGGSGKQSLSRLSAFIS-T--LEPFQIQLKKNYGIPDLKIDL- 121 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL-------~~p~gh~lLvG~~GsGr~sl~rlaa~~~-~--~~~~~i~~~~~y~~~~f~~dL- 121 (1637)
.++=-++|+..|++..+.. +.|.|..|++|++|+||+.+++.-|... + -.++.++++. |....--..|
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse-~~~~~~~~~l~ 645 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSE-FQEAHTVSRLK 645 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHH-hhhhhhhcccc
Confidence 4555677888887766553 3467889999999999999997555444 2 2445555431 2110000000
Q ss_pred -----------HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 122 -----------ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 122 -----------k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
...+..+--++...|++|+|-+=.++.+...+=.+|..|.+.
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~ 698 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVME 698 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceee
Confidence 012222311234467777776555665555555555666553
No 123
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=87.97 E-value=0.52 Score=56.42 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=41.7
Q ss_pred hhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 58 EDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 58 ~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
.++++++.+-.|-++ |..++.|+|.+||||+|+.+..|-..|+.++..
T Consensus 117 ~~~l~~~~~~~~~~~-~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 117 RDALSGMLGAGRRAA-RRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred HHHHHHHHhhhhhcc-CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 578888888888877 456899999999999999999998889988854
No 124
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.95 E-value=0.45 Score=48.17 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=26.0
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceEEEe
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQIQL 108 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~ 108 (1637)
.+++|++||||+|+++..|--.|+.++...-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 4789999999999999888887888776543
No 125
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=0.92 Score=57.89 Aligned_cols=52 Identities=21% Similarity=0.107 Sum_probs=39.3
Q ss_pred hhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc
Q psy2649 59 DAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK 110 (1637)
Q Consensus 59 ~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~ 110 (1637)
-.+++++=-.|.=..-+-=+.|||++|+|||||.+=-|-..|-+++.+.+..
T Consensus 334 RIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 334 RILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 3455555444443344456678999999999999999999999999988774
No 126
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.85 E-value=0.72 Score=56.00 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=52.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc-----cceEEEe-ccccCcchhhhHHH-----------------------HH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL-----EPFQIQL-KKNYGIPDLKIDLA-----------------------SL 124 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~-----~~~~i~~-~~~y~~~~f~~dLk-----------------------~~ 124 (1637)
+|..++++|++|+||+|+++..+.-... .++-.-+ .+++++.+|.+.++ +.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 5667889999999999999887664322 2222222 34466666666652 11
Q ss_pred HHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
....--.|+.|++++++-+-.....-| --+++|+.|
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~arAqre---i~~~~G~~~ 282 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLARAYNT---VTPASGKVL 282 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHHHHHHH---hHhhcCCCC
Confidence 112224688899998886654433333 234677776
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.51 E-value=0.61 Score=63.45 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=61.0
Q ss_pred hhhhhhhhhhhhhhhhh---h-h---cCCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhh----
Q psy2649 53 NLVLFEDAMSHICRINR---I-M---EAPRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLK---- 118 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~R---v-L---~~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~---- 118 (1637)
.++=-++|+..|++.-+ + | ..|.|+.|++|++|+||+++++.-|... +..++.++++. |......
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~-~~~~~~~~~l~ 588 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSE-YMEKHTVSKLI 588 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchh-ccccccHHHhc
Confidence 34555677777765433 2 1 3467899999999999999988766543 34566666543 3211100
Q ss_pred ------------hHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 119 ------------IDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 119 ------------~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
..|...+.+. -..|++++|-+-.++.+...+=.+|..|.+.
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~----p~~VvllDeieka~~~v~~~Llq~le~g~~~ 641 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKK----PYTVVLFDEIEKAHPDIFNLLLQILDDGRLT 641 (821)
T ss_pred CCCCcccCcCccchHHHHHHhC----CCeEEEECChhhCCHHHHHHHHHHhccCcee
Confidence 1122322222 2267778887655665554444444556553
No 128
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.45 E-value=1.5 Score=49.02 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=60.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcc-hhhhHHHHHHHHhhcccccEEEEeccccccccceeee
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIP-DLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVI 152 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~-~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~ 152 (1637)
++-++.+||.+|+||+||.|--+.+..-.-=+|.+.. ..+. -=...||+.-.++| ++|-..+++.. .-..
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g-~~i~~~~~k~lr~~r~~iG-------mIfQ~~nLv~r-~sv~ 99 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG-VQITKLKGKELRKLRRDIG-------MIFQQFNLVPR-LSVL 99 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecc-cchhccchHHHHHHHHhce-------eEeccCCcccc-cHHH
Confidence 5667889999999999999988876665544443332 1111 11233555554444 67777777643 2222
Q ss_pred ehhhhc-cCCC------CCCCCchHHHHHHHhhhc
Q psy2649 153 INDMLA-SGEV------PDLFTDDEIENIVNNIAA 180 (1637)
Q Consensus 153 in~lL~-~gev------p~Lf~~ee~~~i~~~~~~ 180 (1637)
-|-|+. -|.. =|+|+.+|....++.+..
T Consensus 100 ~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLer 134 (258)
T COG3638 100 ENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALER 134 (258)
T ss_pred HHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHH
Confidence 233322 2333 399999999988886653
No 129
>KOG0736|consensus
Probab=87.43 E-value=0.66 Score=59.23 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=67.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEe---ccccCcchhhhHHHHHHHHhhcccccEEEEecccccccccee
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQL---KKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFL 150 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~---~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fl 150 (1637)
+|+-+||-|++|||||-++|=+|-=+...++.++- -.-| +.+=.+.+|+++.+| =.-.|||++|+|-+-.-|
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY-VGqSE~NVR~VFerA-R~A~PCVIFFDELDSlAP--- 778 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY-VGQSEENVREVFERA-RSAAPCVIFFDELDSLAP--- 778 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH-hcchHHHHHHHHHHh-hccCCeEEEeccccccCc---
Confidence 57889999999999999999999999999998751 1112 234467899999999 467899998887433222
Q ss_pred eeehhhhccCCCCCCCCchHHHHHHHhhhcC
Q psy2649 151 VIINDMLASGEVPDLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 151 e~in~lL~~gevp~Lf~~ee~~~i~~~~~~~ 181 (1637)
+==++|+--|. +|.+++++-.+
T Consensus 779 ----~RG~sGDSGGV-----MDRVVSQLLAE 800 (953)
T KOG0736|consen 779 ----NRGRSGDSGGV-----MDRVVSQLLAE 800 (953)
T ss_pred ----cCCCCCCcccc-----HHHHHHHHHHH
Confidence 11135554443 56777777655
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.41 E-value=0.69 Score=63.17 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred hhhhhhhhhhhhhhhhhhhc-------CCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHH-
Q psy2649 53 NLVLFEDAMSHICRINRIME-------APRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDL- 121 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL~-------~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dL- 121 (1637)
.++=-+.++.-|++.-+-.+ .|.|+.|++|++|+||++++|.-|... +..++.++++. |........|
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~-~~~~~~~~~l~ 644 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSE-YMEKHSVARLI 644 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechh-hcccchHHHhc
Confidence 34555667777766555432 378999999999999999998877654 34566665542 2211111111
Q ss_pred -----------HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 122 -----------ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 122 -----------k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
...+..+--.....|++++|-+-.++.....+-.+|..|.+.
T Consensus 645 g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~ 697 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLT 697 (852)
T ss_pred CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCcee
Confidence 111222211112247778876655665555555555566653
No 131
>PF13245 AAA_19: Part of AAA domain
Probab=87.40 E-value=0.52 Score=43.60 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=23.9
Q ss_pred hhhhcCCCCceEEEeecCCchh-hHHhHHHhhc
Q psy2649 68 NRIMEAPRGNALLVGVGGSGKQ-SLSRLSAFIS 99 (1637)
Q Consensus 68 ~RvL~~p~gh~lLvG~~GsGr~-sl~rlaa~~~ 99 (1637)
.+.++ +.+.+++.|++||||+ +++++++++.
T Consensus 4 ~~al~-~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 4 RRALA-GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred HHHHh-hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566 5666677999999999 6788888776
No 132
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.24 E-value=0.93 Score=51.54 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
...++++|.|++||||+++++..+.-.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999887654
No 133
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.09 E-value=1 Score=60.47 Aligned_cols=68 Identities=25% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhh-----------hHHHHHHHHhhcccccEEEEeccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLK-----------IDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~-----------~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
++-.++|+|++|+||+|+++..|...+..++.+..+.--+..+.+ -.+...+.++|..+ + |++++|-
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~-villDEi 425 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKN-P-LFLLDEI 425 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCC-C-EEEEECh
Confidence 344578899999999999999999999998887755321111111 12344566676543 3 5667764
Q ss_pred c
Q psy2649 143 Q 143 (1637)
Q Consensus 143 ~ 143 (1637)
+
T Consensus 426 d 426 (784)
T PRK10787 426 D 426 (784)
T ss_pred h
Confidence 3
No 134
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.07 E-value=0.38 Score=54.70 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=26.5
Q ss_pred hhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 64 ICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 64 i~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+.+|.+.+.. +.++++|.|+.|+|||||.+-.....
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 4455566665 57899999999999999987555544
No 135
>PRK13947 shikimate kinase; Provisional
Probab=86.97 E-value=0.72 Score=49.95 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=27.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
|++|+|++||||+|+++..|...++.++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999888654
No 136
>KOG3354|consensus
Probab=86.95 E-value=1.1 Score=46.33 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=50.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEE----------eccccCcc-----hhhhHHHHHHHHhhcccccEEEEe
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ----------LKKNYGIP-----DLKIDLASLYLKAGLKNAGIMFLM 139 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~----------~~~~y~~~-----~f~~dLk~~~~~ag~~~~~~v~l~ 139 (1637)
.+-.++.|++||||+|+.+..+.-.+++++.-+ ++++--++ .|-..+-..++++...++.+|+-.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVlAC 91 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVLAC 91 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEEEh
Confidence 357788999999999999999999999887542 44444443 366667777887777788777765
Q ss_pred cc
Q psy2649 140 TD 141 (1637)
Q Consensus 140 ~d 141 (1637)
+.
T Consensus 92 Sa 93 (191)
T KOG3354|consen 92 SA 93 (191)
T ss_pred HH
Confidence 54
No 137
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.93 E-value=0.44 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.0
Q ss_pred CceEEEeecCCchhhHHhHHHhh
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.+++|.|++|+|||+|++..++-
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999976653
No 138
>PRK07261 topology modulation protein; Provisional
Probab=86.86 E-value=1 Score=48.87 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=24.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
.++++|.+||||+|+++..+-..+..++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 3688999999999999887776677666553
No 139
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.74 E-value=0.66 Score=58.45 Aligned_cols=101 Identities=20% Similarity=0.310 Sum_probs=57.5
Q ss_pred Cc-eEEEeecCCchhhHHhHHHhhcccc-------------------------ceEEEeccccCcchhhhHHHHHHHHhh
Q psy2649 76 GN-ALLVGVGGSGKQSLSRLSAFISTLE-------------------------PFQIQLKKNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 76 gh-~lLvG~~GsGr~sl~rlaa~~~~~~-------------------------~~~i~~~~~y~~~~f~~dLk~~~~~ag 129 (1637)
+| .|+.|++|+||+++++..|....|. ++.++...+.++ ++++.+.....
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gi----d~ir~i~~~l~ 114 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGI----EDIRQINETVL 114 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCH----HHHHHHHHHHH
Confidence 56 5779999999999999887655442 333322122222 44554444333
Q ss_pred ---cccccEEEEeccccccccceeeeehhhhcc-----CCCCCCCCchHHHHHHHhhhcCCC
Q psy2649 130 ---LKNAGIMFLMTDSQVADEKFLVIINDMLAS-----GEVPDLFTDDEIENIVNNIAAEPE 183 (1637)
Q Consensus 130 ---~~~~~~v~l~~d~~i~~~~fle~in~lL~~-----gevp~Lf~~ee~~~i~~~~~~~~~ 183 (1637)
..+..-++++++.+-.... ..|.||.. +.+.=+|..++...|+..++..+.
T Consensus 115 ~~~~~~~~kvvIIdead~lt~~---~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 115 FTPSKSRYKIYIIDEVHMLTKE---AFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQ 173 (451)
T ss_pred hhhhcCCCEEEEEecHHhhCHH---HHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhce
Confidence 3366677888886544332 23444442 333344556666667666665543
No 140
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.69 E-value=1.1 Score=57.19 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=40.3
Q ss_pred CCce-EEEeecCCchhhHHhHHH-hhc-----------------------cccceEEEeccccCcchhhhHHHHHHHH--
Q psy2649 75 RGNA-LLVGVGGSGKQSLSRLSA-FIS-----------------------TLEPFQIQLKKNYGIPDLKIDLASLYLK-- 127 (1637)
Q Consensus 75 ~gh~-lLvG~~GsGr~sl~rlaa-~~~-----------------------~~~~~~i~~~~~y~~~~f~~dLk~~~~~-- 127 (1637)
-+|+ |+.|+.|+||+|++|.-| .++ +.++++++...+.++ +++++++..
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gI----d~IRelie~~~ 110 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGI----DDIRELIEQTK 110 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCH----HHHHHHHHHHh
Confidence 4787 779999999999988544 442 124555554433344 445555443
Q ss_pred -hhcccccEEEEeccccc
Q psy2649 128 -AGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 128 -ag~~~~~~v~l~~d~~i 144 (1637)
....+..-|+++++.+-
T Consensus 111 ~~P~~~~~KVvIIDEad~ 128 (535)
T PRK08451 111 YKPSMARFKIFIIDEVHM 128 (535)
T ss_pred hCcccCCeEEEEEECccc
Confidence 23345666778787643
No 141
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.61 E-value=6 Score=56.36 Aligned_cols=107 Identities=24% Similarity=0.370 Sum_probs=66.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhH-------------------HHHHHHHhhcccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKID-------------------LASLYLKAGLKNA 133 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~d-------------------Lk~~~~~ag~~~~ 133 (1637)
...||.-++|..|+|||||-||.-+-=|...-.+ +.+.-+-..|.+. +..++..+-.+|+
T Consensus 15 ~lDG~t~i~GTNG~GKTTlLRlip~FYGa~p~rl-v~k~~~rksF~~yYLP~~nSyIIYEY~R~~G~~~~vvl~~~s~g~ 93 (1201)
T PF12128_consen 15 KLDGHTHICGTNGVGKTTLLRLIPFFYGADPSRL-VPKTSGRKSFDDYYLPYSNSYIIYEYQREDGQLCCVVLSRKSDGR 93 (1201)
T ss_pred ecCCceeeecCCCCcHHHHHHHHHHhcCCCcccc-CCccchhhhHHHHcCCCCCceEEEeeeccCCceeEEEEeecCCCC
Confidence 4679999999999999999999999888866665 3322111222221 2222222223455
Q ss_pred cEEEEeccccccccceeeeeh----hhhc----------cC-CCCCCCCchHHHHHHHhhhc
Q psy2649 134 GIMFLMTDSQVADEKFLVIIN----DMLA----------SG-EVPDLFTDDEIENIVNNIAA 180 (1637)
Q Consensus 134 ~~v~l~~d~~i~~~~fle~in----~lL~----------~g-evp~Lf~~ee~~~i~~~~~~ 180 (1637)
.|++=|-|+-...+-|+..-+ ..++ .| .++..-+.+|+-.|+..-+.
T Consensus 94 ~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~r~~~~~gv~~S~~i~~~eYR~IIqn~~~ 155 (1201)
T PF12128_consen 94 GVQYRFIDAPYQRELFIDENNGDLVQALSMWELIRELRRKGVQVSRKITTSEYRAIIQNNRS 155 (1201)
T ss_pred ceeeeeccCccchhhcccccCccccccccHHHHHHHHHhCCCeeecCcCHHHHHHHHcCCCc
Confidence 677777777666566666555 2222 22 44566668899988886654
No 142
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.54 E-value=1.5 Score=50.21 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=48.0
Q ss_pred hhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 65 CRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 65 ~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
.+.++.-.-+-.|+||.|++|.||+||+.+.|+=.|-.+- ++.+= .-+=--||-.++.. ++... ||++++=+
T Consensus 42 I~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k---~tsGp-~leK~gDlaaiLt~--Le~~D-VLFIDEIH 113 (332)
T COG2255 42 IKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK---ITSGP-ALEKPGDLAAILTN--LEEGD-VLFIDEIH 113 (332)
T ss_pred HHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE---ecccc-cccChhhHHHHHhc--CCcCC-eEEEehhh
Confidence 3445556667799999999999999999999998886544 33321 22334677777743 45444 44445533
No 143
>PF13173 AAA_14: AAA domain
Probab=86.49 E-value=0.63 Score=47.85 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=48.6
Q ss_pred CceEEEeecCCchhhHHhHHH-hhc-cccceEEEeccccCcchhhh-HHHHHHHHhhcccccEEEEeccccccccceeee
Q psy2649 76 GNALLVGVGGSGKQSLSRLSA-FIS-TLEPFQIQLKKNYGIPDLKI-DLASLYLKAGLKNAGIMFLMTDSQVADEKFLVI 152 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa-~~~-~~~~~~i~~~~~y~~~~f~~-dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~ 152 (1637)
.-.+|.|+.|+||+|+.+-.+ ... .-+++.++...... ....+ ++.+.+.+. ..+++..++++|-|-. +.+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~iDEiq~~-~~~~~~ 79 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD-RRLADPDLLEYFLEL-IKPGKKYIFIDEIQYL-PDWEDA 79 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH-HHHhhhhhHHHHHHh-hccCCcEEEEehhhhh-ccHHHH
Confidence 456889999999999985444 443 34555554332111 11111 134444444 4446777888888766 456666
Q ss_pred ehhhhccC
Q psy2649 153 INDMLASG 160 (1637)
Q Consensus 153 in~lL~~g 160 (1637)
++.+...+
T Consensus 80 lk~l~d~~ 87 (128)
T PF13173_consen 80 LKFLVDNG 87 (128)
T ss_pred HHHHHHhc
Confidence 77777665
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.26 E-value=0.64 Score=58.42 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=42.1
Q ss_pred hhhhhcCCC--CceEEEeecCCchhhHHhHHHhh-c----cccceEEEeccccCcchhhhHHHHHHHHhh-------ccc
Q psy2649 67 INRIMEAPR--GNALLVGVGGSGKQSLSRLSAFI-S----TLEPFQIQLKKNYGIPDLKIDLASLYLKAG-------LKN 132 (1637)
Q Consensus 67 i~RvL~~p~--gh~lLvG~~GsGr~sl~rlaa~~-~----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag-------~~~ 132 (1637)
+.++...|+ .+++|.|.+|+|||.|++-.++- . +..++-+. ..+|..++...+..-. ..+
T Consensus 120 ~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~~~~~f~~~~~~ 193 (440)
T PRK14088 120 ALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT------SEKFLNDLVDSMKEGKLNEFREKYRK 193 (440)
T ss_pred HHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 334445565 36899999999999998866653 2 23444332 2356665554443211 112
Q ss_pred ccEEEEeccccc
Q psy2649 133 AGIMFLMTDSQV 144 (1637)
Q Consensus 133 ~~~v~l~~d~~i 144 (1637)
..-+++++|-+.
T Consensus 194 ~~dvLlIDDi~~ 205 (440)
T PRK14088 194 KVDVLLIDDVQF 205 (440)
T ss_pred cCCEEEEechhh
Confidence 345777777664
No 145
>KOG0734|consensus
Probab=86.13 E-value=0.93 Score=55.50 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=46.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhH--------HHHHHHHhhcccccEEEEecccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKID--------LASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~d--------Lk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
|.| +||+|++|+||+-|+|-+|-=++-.+|...- .+|.|- +|+++..| -..-|++++|++-+
T Consensus 337 PKG-VLLvGPPGTGKTlLARAvAGEA~VPFF~~sG------SEFdEm~VGvGArRVRdLF~aA-k~~APcIIFIDEiD 406 (752)
T KOG0734|consen 337 PKG-VLLVGPPGTGKTLLARAVAGEAGVPFFYASG------SEFDEMFVGVGARRVRDLFAAA-KARAPCIIFIDEID 406 (752)
T ss_pred CCc-eEEeCCCCCchhHHHHHhhcccCCCeEeccc------cchhhhhhcccHHHHHHHHHHH-HhcCCeEEEEechh
Confidence 344 7899999999999999999999999885421 366654 56766555 56677777777643
No 146
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.98 E-value=4.3 Score=37.01 Aligned_cols=70 Identities=13% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHH
Q psy2649 434 LAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLG 513 (1637)
Q Consensus 434 l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~ 513 (1637)
++++|..+..|-....-++.++.+++++-..|..+.+.+...+..|+.+.+..+ .|+.-|++.+..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk--------------~E~~~WqerLr~ 71 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK--------------EQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 566677777777777777777777777777777776666665666666555433 345567766665
Q ss_pred Hhhc
Q psy2649 514 LQQS 517 (1637)
Q Consensus 514 l~~~ 517 (1637)
+=.+
T Consensus 72 LLGk 75 (79)
T PRK15422 72 LLGR 75 (79)
T ss_pred HHHh
Confidence 5433
No 147
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.77 E-value=3.9 Score=49.64 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhccccccc----ch
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENV----RW 507 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~----rW 507 (1637)
+++.+.+.++++.+.++...+++...+++.|..++.+......+..+.+.+.+..+.++..++.-+..|..++. +-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777788888888888888888877661 11
Q ss_pred HHHHHHHhh-------ccccCCcceeeehhhhhhhcchhhhHHHH
Q psy2649 508 KDSVLGLQQ-------SALTLPGDILLVTAFVSYVGCFTRSYRLD 545 (1637)
Q Consensus 508 ~~~~~~l~~-------~~~~l~gd~lL~aa~i~Y~G~~~~~~R~~ 545 (1637)
.+.+.-+.. .+.-.+.|+.=+--...|.|.++++.|+.
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~ 162 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAER 162 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHH
Confidence 222222222 11234455565666777888887776543
No 148
>PRK00625 shikimate kinase; Provisional
Probab=85.75 E-value=0.53 Score=51.12 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=27.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
+++|+|++||||+|++|..|--.++.++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999999998898887654
No 149
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=85.75 E-value=1.4 Score=50.17 Aligned_cols=115 Identities=13% Similarity=0.218 Sum_probs=68.7
Q ss_pred EEEeCCCCCCchhHHHhccccceeccCCCccccccCCchh-HHHHhHHHhhhccCCEEEEehhh-hHHhhhhcHHHHHHh
Q psy2649 1052 FFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQE-VIAEETIQIASTKGHWAILQNVH-LVKNWLPTLDKKMEA 1129 (1637)
Q Consensus 1052 i~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~-~~a~~~l~~a~~~G~WvlL~N~H-L~~~wl~~Le~~l~~ 1129 (1637)
.+.-++|.=-+..+.++|+..|. .+.++.-..+-+ ....+++.-++..|.|+++.|+| |..+-++.+-+.+..
T Consensus 36 ~~~GpagtGKtetik~La~~lG~-----~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~~ 110 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGR-----FVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQS 110 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT-------EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCC-----eEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 44567777789999999999883 344444444433 34468888899999999999987 455555555444433
Q ss_pred h----h------------cCCCCceeEEEecCCCCCCCccccccccccccccccCCCCc
Q psy2649 1130 S----F------------EKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNEPPT 1172 (1637)
Q Consensus 1130 ~----~------------~~~h~~FRLwLts~~~~~~~~~~fP~~lLq~s~kv~~E~p~ 1172 (1637)
+ . -..++++++|+|..|.-. ....+|.+|...-..|+.-.|.
T Consensus 111 i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~-gr~~LP~nLk~lFRpvam~~PD 168 (231)
T PF12774_consen 111 IQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA-GRSELPENLKALFRPVAMMVPD 168 (231)
T ss_dssp HHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC-CC--S-HHHCTTEEEEE--S--
T ss_pred HHHhhcccccccccCCCEEEEccceeEEEeeccccC-CcccCCHhHHHHhheeEEeCCC
Confidence 2 1 135789999999876532 2345888888777777777665
No 150
>PRK13946 shikimate kinase; Provisional
Probab=85.62 E-value=0.72 Score=50.76 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
+++|+|++||||+|+.+..|-..|+.++..+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 6889999999999999999988899888654
No 151
>PLN02199 shikimate kinase
Probab=85.39 E-value=0.87 Score=53.09 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=56.5
Q ss_pred hhhhhhhhhhhhhhhhcC--CCCceEEEeecCCchhhHHhHHHhhccccceEEEe--------------ccccCcchhhh
Q psy2649 56 LFEDAMSHICRINRIMEA--PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQL--------------KKNYGIPDLKI 119 (1637)
Q Consensus 56 lf~~~i~hi~ri~RvL~~--p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~--------------~~~y~~~~f~~ 119 (1637)
-|++.. +.+.++-+.. ++-+++|+|..||||+|+.++.|-..|+.++..+. -..|+..-|++
T Consensus 83 ~~de~~--Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~ 160 (303)
T PLN02199 83 PFDEDI--LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRG 160 (303)
T ss_pred CCCHHH--HHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHH
Confidence 566653 6666666664 57789999999999999999999988998886541 12466667777
Q ss_pred HHHHHHHHhhcccccEEE
Q psy2649 120 DLASLYLKAGLKNAGIMF 137 (1637)
Q Consensus 120 dLk~~~~~ag~~~~~~v~ 137 (1637)
--.+++.+.. ...++|+
T Consensus 161 ~E~e~L~~L~-~~~~~VI 177 (303)
T PLN02199 161 KETDALKKLS-SRYQVVV 177 (303)
T ss_pred HHHHHHHHHH-hcCCEEE
Confidence 7777777763 2335544
No 152
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.33 E-value=1.5 Score=50.37 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHh-hc--cccceEEEeccccCcchhhhHHHHHHH
Q psy2649 60 AMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAF-IS--TLEPFQIQLKKNYGIPDLKIDLASLYL 126 (1637)
Q Consensus 60 ~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~-~~--~~~~~~i~~~~~y~~~~f~~dLk~~~~ 126 (1637)
++.++.+.+.-.....++++|.|.+|+||+.|+.-.|. +. +..+.-+ +..+|.+.++..+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i------t~~~l~~~l~~~~~ 147 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII------TVADIMSAMKDTFS 147 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------EHHHHHHHHHHHHh
Confidence 33444444433333335899999999999999665444 32 4455544 24567777776553
No 153
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.29 E-value=1.3 Score=49.85 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchH
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWK 508 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~ 508 (1637)
|.+..|.+++.++..+...+.+++..+.+++.++.+++.+.++..+.+.+.+..+..++. .+=.++|..|..-|+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~-----~~e~~aL~~E~~~ak 102 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD-----ERELRALNIEIQIAK 102 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443333333332211111 122455777777788
Q ss_pred HHHHHHhhccccC
Q psy2649 509 DSVLGLQQSALTL 521 (1637)
Q Consensus 509 ~~~~~l~~~~~~l 521 (1637)
.....++.++..+
T Consensus 103 ~r~~~le~el~~l 115 (239)
T COG1579 103 ERINSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777766554
No 154
>KOG1029|consensus
Probab=85.28 E-value=4.6 Score=51.21 Aligned_cols=90 Identities=13% Similarity=0.181 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHH
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKD 509 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 509 (1637)
+..+...++.+++....+++++..+|.+++..+..-+.+++..+..++..-.++...+.||+-.+.-+..|.-|+..|..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34455555555666666666666666555555555555555555544444445555555555555555568889999998
Q ss_pred HHHHHhhccc
Q psy2649 510 SVLGLQQSAL 519 (1637)
Q Consensus 510 ~~~~l~~~~~ 519 (1637)
++...+....
T Consensus 515 qlkq~q~a~~ 524 (1118)
T KOG1029|consen 515 QLKQKQSAHK 524 (1118)
T ss_pred HHHHhhhhcc
Confidence 8876665443
No 155
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=85.25 E-value=0.91 Score=49.35 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.7
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
..+++|+|++|+||+|+++..|...++.++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 457899999999999999999988888887654
No 156
>PRK11637 AmiB activator; Provisional
Probab=85.25 E-value=3.8 Score=51.53 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 429 PKRKALAAANAELAAASQKLAEL-------KAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~-------~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
..+++++++++++++.+.++... +.++..++.+|..++.+++...++...++.++...+.++..++.=+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444 44444444444444444444444444444444444444444443333
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=85.22 E-value=1 Score=54.20 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=61.9
Q ss_pred CceE-EEeecCCchhhHHhHHHhhccc------------------------cceEEEec---cccCcchhhhHHHHHHHH
Q psy2649 76 GNAL-LVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLK---KNYGIPDLKIDLASLYLK 127 (1637)
Q Consensus 76 gh~l-LvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~---~~y~~~~f~~dLk~~~~~ 127 (1637)
.|++ +.|+.|+||+++++--|....| +++.+... +..++.+.|+-.+.+...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 7765 5899999999997654443333 45555432 346666666633333333
Q ss_pred hhcccccEEEEeccccccccceeeeehhhhccCC-----CCCCCCchHHHHHHHhhhcCCCc
Q psy2649 128 AGLKNAGIMFLMTDSQVADEKFLVIINDMLASGE-----VPDLFTDDEIENIVNNIAAEPEI 184 (1637)
Q Consensus 128 ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~ge-----vp~Lf~~ee~~~i~~~~~~~~~~ 184 (1637)
...+..-|+++++.+-.++ +--|.||.+=| +.=++..+..+.+...++..+..
T Consensus 102 -~~~~~~kv~iI~~a~~m~~---~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 102 -AQLGGRKVVLIEPAEAMNR---NAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQ 159 (328)
T ss_pred -cccCCCeEEEECChhhCCH---HHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhcee
Confidence 3445555556777766554 56788886432 22355566666666666554443
No 158
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=85.19 E-value=1.2 Score=47.75 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=68.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEE-------------eccccCcchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ-------------LKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~-------------~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
.+++|||+.|+||+|+-|.-|-..++.++-.+ +-..||...||+-=.+++...-..+ +.|+-.---
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~~ViaTGGG 81 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEED-NAVIATGGG 81 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEECCCc
Confidence 47899999999999999999999999998664 2234566677776666776664333 555543333
Q ss_pred cccccceeeeehhhhccCCCCCCCCchHHHHHHHhhhcCCCc
Q psy2649 143 QVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPEI 184 (1637)
Q Consensus 143 ~i~~~~fle~in~lL~~gevp~Lf~~ee~~~i~~~~~~~~~~ 184 (1637)
-+..+ |..+.|...|-| +|=.-+.+.++..++..-..
T Consensus 82 ~v~~~---enr~~l~~~g~v--v~L~~~~e~l~~Rl~~~~~R 118 (172)
T COG0703 82 AVLSE---ENRNLLKKRGIV--VYLDAPFETLYERLQRDRKR 118 (172)
T ss_pred cccCH---HHHHHHHhCCeE--EEEeCCHHHHHHHhccccCC
Confidence 23333 345666667743 45556777788877644333
No 159
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=85.17 E-value=1.1 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=19.9
Q ss_pred Cc-eEEEeecCCchhhHHhHHHhhcc
Q psy2649 76 GN-ALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 76 gh-~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
+| .||.|++|+||+++++..+-...
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45 57799999999999987765543
No 160
>KOG0731|consensus
Probab=85.16 E-value=0.88 Score=59.16 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=78.2
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHH--HHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEI--VASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~--~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
.|.+|--.++.++.+++.+.=.-+- +.++. -+-|+| +||+|++|||||.|+|=.|--+|-
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lG-----------------AKiPkG-vLL~GPPGTGKTLLAKAiAGEAgV 370 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELG-----------------AKIPKG-VLLVGPPGTGKTLLAKAIAGEAGV 370 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcC-----------------CcCcCc-eEEECCCCCcHHHHHHHHhcccCC
Confidence 4777777777777776554422211 11111 122555 889999999999999999999999
Q ss_pred cceEEEeccccCcchhhhHH--------HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCCCCCCchHHHH
Q psy2649 102 EPFQIQLKKNYGIPDLKIDL--------ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIEN 173 (1637)
Q Consensus 102 ~~~~i~~~~~y~~~~f~~dL--------k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp~Lf~~ee~~~ 173 (1637)
.+|++.-+ +|-|-+ +.++..| =.+.|+.+++++-+..- +-. .|-.-+ -..+|.+.
T Consensus 371 PF~svSGS------EFvE~~~g~~asrvr~lf~~a-r~~aP~iifideida~~--~~r-------~G~~~~-~~~~e~e~ 433 (774)
T KOG0731|consen 371 PFFSVSGS------EFVEMFVGVGASRVRDLFPLA-RKNAPSIIFIDEIDAVG--RKR-------GGKGTG-GGQDEREQ 433 (774)
T ss_pred ceeeechH------HHHHHhcccchHHHHHHHHHh-hccCCeEEEeccccccc--ccc-------cccccC-CCChHHHH
Confidence 99977543 666553 5567666 46888888877754432 111 021111 24577777
Q ss_pred HHHhhhcCC
Q psy2649 174 IVNNIAAEP 182 (1637)
Q Consensus 174 i~~~~~~~~ 182 (1637)
-++++-.++
T Consensus 434 tlnQll~em 442 (774)
T KOG0731|consen 434 TLNQLLVEM 442 (774)
T ss_pred HHHHHHHHh
Confidence 777776554
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=85.13 E-value=1.5 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+-|++|.|++||||++++|..|.+.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998864
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=84.76 E-value=0.68 Score=57.59 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=28.5
Q ss_pred hhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 63 HICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 63 hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.|..-+....+||+||.|++|+||++++|.-+...
T Consensus 27 ~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 27 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 3444444555689999999999999999997766644
No 163
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.44 E-value=4.5 Score=42.39 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccc
Q psy2649 459 EATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSAL 519 (1637)
Q Consensus 459 e~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~ 519 (1637)
..+|+.|.++++.+..........+..+..+....++=+..|..+...|...+..+..++.
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555555566678888889999998888887654
No 164
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.88 E-value=1.8 Score=53.32 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=40.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc------------cceEEEeccccCcchhhhHHHHHHHHh---hcccccEEEEec
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL------------EPFQIQLKKNYGIPDLKIDLASLYLKA---GLKNAGIMFLMT 140 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~------------~~~~i~~~~~y~~~~f~~dLk~~~~~a---g~~~~~~v~l~~ 140 (1637)
.|.|+.|++|+||+++++..|....+ .+++++.... .-.++++.++..+ ...++.-+++++
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~i~~l~~~~~~~p~~~~~kiviID 115 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASN----NSVDDIRNLIDQVRIPPQTGKYKIYIID 115 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccC----CCHHHHHHHHHHHhhccccCCcEEEEEe
Confidence 56888999999999998877776544 2222221111 1125666666644 344556678888
Q ss_pred cccc
Q psy2649 141 DSQV 144 (1637)
Q Consensus 141 d~~i 144 (1637)
|.+-
T Consensus 116 E~~~ 119 (367)
T PRK14970 116 EVHM 119 (367)
T ss_pred Chhh
Confidence 7653
No 165
>PRK12377 putative replication protein; Provisional
Probab=83.62 E-value=1.5 Score=50.52 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHHHHHH
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dLk~~~ 125 (1637)
...++++|.|.+|+||+.|+.-.|.-. ++.+.-+ +..++.++|+..+
T Consensus 99 ~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i------~~~~l~~~l~~~~ 148 (248)
T PRK12377 99 TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV------TVPDVMSRLHESY 148 (248)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE------EHHHHHHHHHHHH
Confidence 345789999999999999977766543 3344332 2346777777655
No 166
>PLN02165 adenylate isopentenyltransferase
Probab=83.29 E-value=1.6 Score=51.95 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=22.3
Q ss_pred cCCCC-ceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 72 EAPRG-NALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 72 ~~p~g-h~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
..+.| ..+|+|+.||||++|+.--|-..+.+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~e 70 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSE 70 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCc
Confidence 44444 58889999999999977555554433
No 167
>PRK09087 hypothetical protein; Validated
Probab=83.28 E-value=0.88 Score=51.81 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
+...+.|.|++|||||+|.+..|.-.+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~ 71 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDAL 71 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 33348999999999999999877654433
No 168
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.21 E-value=11 Score=34.46 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
+.+++++..+..+-.....++.++.+++++-..|+++.++...+-++++.+.+..+.|+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888777777777777776666655554
No 169
>PRK00131 aroK shikimate kinase; Reviewed
Probab=83.20 E-value=1.4 Score=47.74 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=26.6
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
-+++|+|++||||+|+++..|--.++.++...
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 36788899999999999988877788877653
No 170
>PRK03839 putative kinase; Provisional
Probab=82.91 E-value=0.83 Score=50.00 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=25.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
.++|+|++||||+|+++..|-..++.++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 478999999999999999998888877643
No 171
>PTZ00202 tuzin; Provisional
Probab=82.67 E-value=2.5 Score=51.58 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=67.4
Q ss_pred hhhhhhhhhhhhhhhhhhcCCC-C---ceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhh
Q psy2649 54 LVLFEDAMSHICRINRIMEAPR-G---NALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~~p~-g---h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag 129 (1637)
+--|--=-..+.++.++|.... + -++|+|.+|+||+|+.|-+..-.+.-.+-+++. + +.+-|+.++..-|
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr---g---~eElLr~LL~ALG 334 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR---G---TEDTLRSVVKALG 334 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC---C---HHHHHHHHHHHcC
Confidence 4445455566778888887422 2 457899999999999998887766444433333 2 3566888887778
Q ss_pred cccccEEEEeccccccccceeeeehhhhcc-CCCC----CCCCchHHHHHHHhh
Q psy2649 130 LKNAGIMFLMTDSQVADEKFLVIINDMLAS-GEVP----DLFTDDEIENIVNNI 178 (1637)
Q Consensus 130 ~~~~~~v~l~~d~~i~~~~fle~in~lL~~-gevp----~Lf~~ee~~~i~~~~ 178 (1637)
+.+...+ .++. ..+-+.+..+-.. |..| -|=+++++...+++.
T Consensus 335 V~p~~~k-----~dLL-rqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~ 382 (550)
T PTZ00202 335 VPNVEAC-----GDLL-DFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV 382 (550)
T ss_pred CCCcccH-----HHHH-HHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH
Confidence 7443211 1111 1111222233333 7766 556677777777744
No 172
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=81.89 E-value=1.7 Score=47.40 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred hhhc-CCCCceEEEeecCCchhhHHhHHH
Q psy2649 69 RIME-APRGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 69 RvL~-~p~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
++.. .....++++|.+||||+|+.+--.
T Consensus 7 ~~~~~~~~~~ililGl~~sGKTtll~~l~ 35 (175)
T PF00025_consen 7 KLKSKKKEIKILILGLDGSGKTTLLNRLK 35 (175)
T ss_dssp HCTTTTSEEEEEEEESTTSSHHHHHHHHH
T ss_pred HhcccCcEEEEEEECCCccchHHHHHHhh
Confidence 3443 456788999999999999977544
No 173
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=81.84 E-value=2.6 Score=48.64 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=57.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc---ce-EEEeccc--cCcchhhhHHH--------------------HHHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE---PF-QIQLKKN--YGIPDLKIDLA--------------------SLYLK 127 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~---~~-~i~~~~~--y~~~~f~~dLk--------------------~~~~~ 127 (1637)
.+..++++|.+|+||+|+.+-.+...... ++ -+.+..+ +++.+|.++++ .++..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 46678899999999999988877655442 22 2222333 66666666551 11111
Q ss_pred h---hcccccEEEEeccccccccceeee---ehhhhccCCCCCCCCchHHHHHHHhhh
Q psy2649 128 A---GLKNAGIMFLMTDSQVADEKFLVI---INDMLASGEVPDLFTDDEIENIVNNIA 179 (1637)
Q Consensus 128 a---g~~~~~~v~l~~d~~i~~~~fle~---in~lL~~gevp~Lf~~ee~~~i~~~~~ 179 (1637)
| --.|++++++++|-+=.-...-|. .-..++.|+-|..|. ++..+++..|
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~--~~~q~~~~Ar 150 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALH--KPKRFFGAAR 150 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhh--hhHHHHHHhc
Confidence 1 135788888888854222221111 112235566666663 4445555444
No 174
>KOG0991|consensus
Probab=81.76 E-value=3 Score=46.15 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=62.6
Q ss_pred hhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHH-hHHHhhcc--c--cceEEEeccccCcchhhhHHHHHHHH
Q psy2649 53 NLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLS-RLSAFIST--L--EPFQIQLKKNYGIPDLKIDLASLYLK 127 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~-rlaa~~~~--~--~~~~i~~~~~y~~~~f~~dLk~~~~~ 127 (1637)
++|=-+++++-+.-|.+-=.+ -|+++.|++|+||+|.. .||--+.| + -+.+++.+..-+++--|+-+|..-++
T Consensus 28 dIVGNe~tv~rl~via~~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 455566777666666654444 48999999999999885 46666666 2 47788889888888888989886665
Q ss_pred hhcc--cccEEEEecccc
Q psy2649 128 AGLK--NAGIMFLMTDSQ 143 (1637)
Q Consensus 128 ag~~--~~~~v~l~~d~~ 143 (1637)
--.. |+.-+.++++.+
T Consensus 106 kv~lp~grhKIiILDEAD 123 (333)
T KOG0991|consen 106 KVTLPPGRHKIIILDEAD 123 (333)
T ss_pred hccCCCCceeEEEeeccc
Confidence 4333 455555666654
No 175
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.52 E-value=5.8 Score=47.84 Aligned_cols=83 Identities=24% Similarity=0.273 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHH
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDS 510 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~ 510 (1637)
+.+++.+.+++.....+++..++++.+++++++.++.+.++...++.+++.+++..+..++..... =..|..+.+..
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~---t~~Ev~~Lk~~ 284 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW---TRSEVKRLKAK 284 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHH
Confidence 457777788888888888888888888888888888888888877777777777666555433211 12344455555
Q ss_pred HHHHhh
Q psy2649 511 VLGLQQ 516 (1637)
Q Consensus 511 ~~~l~~ 516 (1637)
+..++.
T Consensus 285 ~~~Le~ 290 (325)
T PF08317_consen 285 VDALEK 290 (325)
T ss_pred HHHHHH
Confidence 554444
No 176
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.44 E-value=8 Score=43.07 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=41.4
Q ss_pred EEecchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhH
Q psy2649 424 WTFVEPKRKALAAANAELAAASQKLAELKAKIA----SLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADR 495 (1637)
Q Consensus 424 ~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~----~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 495 (1637)
.....|.+.++.++++++++++++|+...+..+ ++++++++......+..++.++|+++++..+.+++.++.
T Consensus 85 Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 85 LSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888877765533 333444444444444444444444555544444444333
No 177
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=81.31 E-value=1.9 Score=52.56 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=26.4
Q ss_pred hhhhhcCCCCceEEEeecCCchhhHHh-HHHhhc
Q psy2649 67 INRIMEAPRGNALLVGVGGSGKQSLSR-LSAFIS 99 (1637)
Q Consensus 67 i~RvL~~p~gh~lLvG~~GsGr~sl~r-laa~~~ 99 (1637)
+.+.+..++|.+++.|+.||||+|+.+ ++.++.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345566789999999999999999976 555565
No 178
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=81.23 E-value=1.4 Score=47.77 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhcc---ccceEEEeccccCcchhhhHH-------------
Q psy2649 58 EDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIST---LEPFQIQLKKNYGIPDLKIDL------------- 121 (1637)
Q Consensus 58 ~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~---~~~~~i~~~~~y~~~~f~~dL------------- 121 (1637)
+.++.++.+..|.+.....++||.|..||||+.++|..-.... ..++.++.. .++...+..+|
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~-~~~~~~~e~~LFG~~~~~~~~~~~ 83 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA-ALPEELLESELFGHEKGAFTGARS 83 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT-TS-HHHHHHHHHEBCSSSSTTTSS
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh-hhhcchhhhhhhcccccccccccc
Confidence 3456666666666666669999999999999999998766543 457766654 23322222222
Q ss_pred --HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 122 --ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 122 --k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
+.++..| ..-++++++=+-..+..-..+-.+|.+|.+.
T Consensus 84 ~~~G~l~~A----~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~ 123 (168)
T PF00158_consen 84 DKKGLLEQA----NGGTLFLDEIEDLPPELQAKLLRVLEEGKFT 123 (168)
T ss_dssp EBEHHHHHT----TTSEEEEETGGGS-HHHHHHHHHHHHHSEEE
T ss_pred ccCCceeec----cceEEeecchhhhHHHHHHHHHHHHhhchhc
Confidence 1233333 2234555554444444445555666666553
No 179
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=81.20 E-value=1.9 Score=46.24 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=22.3
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
++|+|++||||+|+++.-+...++.++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 3689999999999988877776655543
No 180
>PRK06217 hypothetical protein; Validated
Probab=81.17 E-value=1.1 Score=49.33 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=25.0
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
+++++|.+||||+|+++--+-..++.++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~ 32 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc
Confidence 478999999999999887777778877654
No 181
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=81.06 E-value=1.2 Score=47.14 Aligned_cols=31 Identities=32% Similarity=0.473 Sum_probs=26.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
+++|+|++||||+|+++..|--.++.++...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4689999999999999888877788877653
No 182
>CHL00206 ycf2 Ycf2; Provisional
Probab=80.85 E-value=2.2 Score=60.41 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=32.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEecc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK 110 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~ 110 (1637)
|..-+||+|++||||+.|+|=.|.-++..++.|..+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~ 1665 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1665 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHH
Confidence 4556899999999999999999999999999987553
No 183
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=2.4 Score=49.04 Aligned_cols=100 Identities=25% Similarity=0.245 Sum_probs=61.8
Q ss_pred ccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhh-----hcCCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 26 MKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRI-----MEAPRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 26 ~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~Rv-----L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.+++...+++..|.+|+--=....+ ||.=.+-.|.-||.-- .....+|+||+|+.||||+-|+.--|-+.+
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKK----vLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKK----VLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhc----eeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456666777666544321111111 3333444577777543 334569999999999999999998888888
Q ss_pred ccceEEEec----cccCcchhhhHHHHHHHHhh
Q psy2649 101 LEPFQIQLK----KNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 101 ~~~~~i~~~----~~y~~~~f~~dLk~~~~~ag 129 (1637)
-.+---+.| .+|==.|-.+=|-++++.|-
T Consensus 123 VPFaiADATtLTEAGYVGEDVENillkLlqaad 155 (408)
T COG1219 123 VPFAIADATTLTEAGYVGEDVENILLKLLQAAD 155 (408)
T ss_pred CCeeeccccchhhccccchhHHHHHHHHHHHcc
Confidence 765544433 34544455555666666663
No 184
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.71 E-value=2 Score=56.24 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=55.2
Q ss_pred Cce-EEEeecCCchhhHHhHHHhhccc-------------------------cceEEEeccccCcchhhhHHHHHHHHh-
Q psy2649 76 GNA-LLVGVGGSGKQSLSRLSAFISTL-------------------------EPFQIQLKKNYGIPDLKIDLASLYLKA- 128 (1637)
Q Consensus 76 gh~-lLvG~~GsGr~sl~rlaa~~~~~-------------------------~~~~i~~~~~y~~~~f~~dLk~~~~~a- 128 (1637)
.|+ |+.|+.|+||++++++-|....| .++.++...+.+ .+|++.++..+
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~----vd~Ir~li~~~~ 114 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNS----VDDIRNLIEQVR 114 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCC----HHHHHHHHHHHh
Confidence 674 67899999999999987776543 333343332222 35666666443
Q ss_pred --hcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhhcC
Q psy2649 129 --GLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 129 --g~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~~~ 181 (1637)
...++.-|+++++.+.... +..|.||..=|=| =+|..++...|+..++..
T Consensus 115 ~~P~~~~~KVvIIdea~~Ls~---~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR 171 (614)
T PRK14971 115 IPPQIGKYKIYIIDEVHMLSQ---AAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR 171 (614)
T ss_pred hCcccCCcEEEEEECcccCCH---HHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh
Confidence 3555666778787655433 2344454422211 134444445555544433
No 185
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=80.71 E-value=2.1 Score=56.11 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCceEEEeecCCchhhHHhHHHhhc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
..|++|+|++||||+|++|......
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999987655
No 186
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.66 E-value=1.9 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=21.5
Q ss_pred CCceEEEeecCCchhhHHh-HHHhhc
Q psy2649 75 RGNALLVGVGGSGKQSLSR-LSAFIS 99 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~r-laa~~~ 99 (1637)
+|-.+++|++||||+|+.+ |+.++.
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4889999999999999977 677775
No 187
>KOG0728|consensus
Probab=80.55 E-value=0.63 Score=51.38 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=31.2
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
+.||.| +||-|++|+||+-|+|-+||-..|.+..+.
T Consensus 178 IaQPKG-vlLygppgtGktLlaraVahht~c~firvs 213 (404)
T KOG0728|consen 178 IAQPKG-VLLYGPPGTGKTLLARAVAHHTDCTFIRVS 213 (404)
T ss_pred CCCCcc-eEEecCCCCchhHHHHHHHhhcceEEEEec
Confidence 457777 678899999999999999999999988653
No 188
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=80.47 E-value=6.4 Score=46.50 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc---c-ccceEEE
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS---T-LEPFQIQ 107 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~---~-~~~~~i~ 107 (1637)
++.++++|++|+||||+ ++||++.. + .++.-+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45788899999999987 88998874 3 5555443
No 189
>KOG0739|consensus
Probab=80.26 E-value=2.1 Score=48.79 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhh----hHHHHHHHHhhcccccEEEEecc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLK----IDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~----~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
.|-.-.||-|++|+||+-|++-+|-=++-++|.+.-+.- ++.|. .-+|+++..| -+++|..+++++
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL--vSKWmGESEkLVknLFemA-Re~kPSIIFiDE 233 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--VSKWMGESEKLVKNLFEMA-RENKPSIIFIDE 233 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH--HHHHhccHHHHHHHHHHHH-HhcCCcEEEeeh
Confidence 466778999999999999999999999999998753321 23343 2367777777 577876665544
No 190
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=80.20 E-value=1.8 Score=54.90 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.5
Q ss_pred CceEEEeecCCchhhHHhHHHhhc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+.++|.|++|+|||.|++-.++-.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999998877654
No 191
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=80.12 E-value=4.8 Score=45.05 Aligned_cols=65 Identities=26% Similarity=0.388 Sum_probs=40.7
Q ss_pred CCCCceEEEeecCCchhhHHhHH--Hhhc-cccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLS--AFIS-TLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rla--a~~~-~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
.|--|+||.|..|+||+||+|=+ .+-. +..++ ++++. |. .+|-.++..--...++.+++++|-..
T Consensus 83 ~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV--EV~k~----dl-~~Lp~l~~~Lr~~~~kFIlFcDDLSF 150 (287)
T COG2607 83 LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV--EVDKE----DL-ATLPDLVELLRARPEKFILFCDDLSF 150 (287)
T ss_pred CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE--EEcHH----HH-hhHHHHHHHHhcCCceEEEEecCCCC
Confidence 58899999999999999998733 2221 22344 44542 11 22334454444567888888777544
No 192
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=80.00 E-value=1.2 Score=53.43 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.2
Q ss_pred CC-CceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PR-GNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~-gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+ ||+||.|.+|+||++++|-.+.+..
T Consensus 27 ~~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 27 PGIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 55 8999999999999999998888873
No 193
>PRK06893 DNA replication initiation factor; Validated
Probab=79.92 E-value=4.2 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=20.2
Q ss_pred CceEEEeecCCchhhHHhHHHhh
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.+++|.|++|+|||.|++-+|+-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999998865
No 194
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.89 E-value=9.9 Score=43.50 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=56.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLA 493 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 493 (1637)
+.-...++.+++++...++.+++.+..++.++..++..++++.++..++..+++.++..+++++..=
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778888888888889999999999999999999999999999999999999998888887543
No 195
>KOG2004|consensus
Probab=79.86 E-value=3.2 Score=53.00 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=37.9
Q ss_pred hhhhhhhhhhhhcCCCCceE-EEeecCCchhhHHhHHHhhccccceEEEeccc
Q psy2649 60 AMSHICRINRIMEAPRGNAL-LVGVGGSGKQSLSRLSAFISTLEPFQIQLKKN 111 (1637)
Q Consensus 60 ~i~hi~ri~RvL~~p~gh~l-LvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~ 111 (1637)
+++||+ +.+.-..-+|-+| ++|++|.||+|++|=.|...|-++|.+.+..=
T Consensus 423 ILEfiA-V~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 423 ILEFIA-VGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred HHHHHH-HHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 344443 2333334567665 48999999999999999999999999887753
No 196
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.73 E-value=14 Score=48.39 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
.|-.+++|+.|+||+|+..--+|...-
T Consensus 27 ~g~~~i~G~NG~GKStll~aI~~~l~G 53 (562)
T PHA02562 27 VKKTLITGKNGAGKSTMLEALTFALFG 53 (562)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 588999999999999999999998844
No 197
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=79.55 E-value=2.2 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+.++++|.|.+||||++|++..++-.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998877653
No 198
>KOG1962|consensus
Probab=79.31 E-value=6.2 Score=43.65 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
+.++.....+++...++++++.+.+++..+++...|+.+.+....|-.+|-++.+..+++++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555555555555555554443
No 199
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=79.26 E-value=1.9 Score=45.35 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccc----cceEEEeccccCcchhhhHHHHHHHHhhccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTL----EPFQIQLKKNYGIPDLKIDLASLYLKAGLKN 132 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~----~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~ 132 (1637)
.||-..++.|++||||+|+.|.+|.+-.- -+|+=+.-..|+...||..+-=+.++-.+-|
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 47788899999999999999999987543 3344344455666666666555554444333
No 200
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.18 E-value=3.5 Score=48.76 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=45.1
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
..|.| +||-|++|||||-|+|-+|+-.+++|..+.-+- .| +.+=---+|+++..|. +..|+.+++++
T Consensus 183 ~PPKG-VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY-iGEGaRlVRelF~lAr-ekaPsIIFiDE 252 (406)
T COG1222 183 DPPKG-VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY-IGEGARLVRELFELAR-EKAPSIIFIDE 252 (406)
T ss_pred CCCCc-eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH-hccchHHHHHHHHHHh-hcCCeEEEEec
Confidence 34555 789999999999999999999999998774331 11 0010123778888884 45555555544
No 201
>PRK11637 AmiB activator; Provisional
Probab=79.15 E-value=6 Score=49.76 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 428 EPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 428 ~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
+-+++++.+++.++...+.++...+.+|..++.++..++.++++..++...++.++...+.+++.....+.
T Consensus 57 ~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 57 AAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555566666666666666666666666666666666666655555555544
No 202
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=78.74 E-value=1.7 Score=52.56 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=39.1
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhcc---ccceEEEec
Q psy2649 55 VLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIST---LEPFQIQLK 109 (1637)
Q Consensus 55 vlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~---~~~~~i~~~ 109 (1637)
+=...++.++.+-.+-+..-..++||.|..||||+.++|..-+... ..++.++-.
T Consensus 9 iG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~ 66 (326)
T PRK11608 9 LGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (326)
T ss_pred EECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCC
Confidence 3334556666655555566789999999999999999998766554 356666544
No 203
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.74 E-value=9.3 Score=39.61 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHH
Q psy2649 435 AAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGL 514 (1637)
Q Consensus 435 ~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l 514 (1637)
.+.+.+-+..+.+...++.+|..+++....+..+.+.+.++...|+.++..+...+.+...=+..|.+|+.-+...+...
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444444444444444444444444444444544444444443
Q ss_pred hh
Q psy2649 515 QQ 516 (1637)
Q Consensus 515 ~~ 516 (1637)
+.
T Consensus 93 q~ 94 (140)
T PF10473_consen 93 QE 94 (140)
T ss_pred HH
Confidence 33
No 204
>KOG0735|consensus
Probab=78.49 E-value=2.7 Score=53.48 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=52.4
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEE---eccccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ---LKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~---~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+..+||-|++|+||+-|+--+|.-+++.+..+. +-..| +..=.+.+|.++.+|. --+||+++|++-+-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky-IGaSEq~vR~lF~rA~-~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY-IGASEQNVRDLFERAQ-SAKPCILFFDEFDS 771 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH-hcccHHHHHHHHHHhh-ccCCeEEEeccccc
Confidence 456889999999999999999999999998875 12222 1223467999999994 57999999988643
No 205
>PRK08116 hypothetical protein; Validated
Probab=78.30 E-value=3.3 Score=48.52 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=27.4
Q ss_pred eEEEeecCCchhhHHhHHHhh---ccccceEEEeccccCcchhhhHHHHHH
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFI---STLEPFQIQLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~---~~~~~~~i~~~~~y~~~~f~~dLk~~~ 125 (1637)
++|.|.+||||+.|+.-.++- .+..++-+. ..+|.+.++..+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~------~~~ll~~i~~~~ 161 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVN------FPQLLNRIKSTY 161 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHH
Confidence 889999999999998766553 244444332 235555555443
No 206
>KOG0735|consensus
Probab=78.15 E-value=2.4 Score=53.84 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=50.7
Q ss_pred CCceEEEeecCCchhhHHhHHHhh------ccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFI------STLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~------~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
.||+||-|+.||||+.|+|=.+-- +..+++.....++-++..+..+|.+++..| ....|-+.+++|-+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~-~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA-LWYAPSIIVLDDLDC 505 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH-HhhCCcEEEEcchhh
Confidence 499999999999999998866542 223344444445555778888999999887 788888888776443
No 207
>PRK06620 hypothetical protein; Validated
Probab=78.04 E-value=1.5 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
..++|.|++|||||+|.+..|...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 56899999999999999987776653
No 208
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=77.94 E-value=1.5 Score=48.32 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=22.9
Q ss_pred CceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
-.++|+|++||||+|+.|..+...+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 367899999999999999998876654
No 209
>PRK14532 adenylate kinase; Provisional
Probab=77.90 E-value=1.5 Score=48.26 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=22.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+++++|++||||+|+++.-|--.|+..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 5789999999999998777766676554
No 210
>PRK10436 hypothetical protein; Provisional
Probab=77.89 E-value=3 Score=52.54 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=33.4
Q ss_pred hhhhhhhhhcCCCCceEEEeecCCchhhHH-hHHHhhccc--cceEEE
Q psy2649 63 HICRINRIMEAPRGNALLVGVGGSGKQSLS-RLSAFISTL--EPFQIQ 107 (1637)
Q Consensus 63 hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~-rlaa~~~~~--~~~~i~ 107 (1637)
++..+.+.+..|+|-+|+.|+.||||+|+. .+..+++.. .++.++
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiE 253 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVE 253 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEec
Confidence 455677888999999999999999999974 455566433 344444
No 211
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=77.66 E-value=1.7 Score=47.07 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=27.3
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
.+++|+|.+||||+|+++..|...|+.++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3678999999999999999999889888755
No 212
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=77.63 E-value=1.7 Score=56.13 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=36.1
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEec
Q psy2649 54 LVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLK 109 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~ 109 (1637)
++--+.+++.+.+. +...-..|+||.|++||||++++|+....+ +..+++++.+
T Consensus 67 iiGqs~~i~~l~~a--l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 67 IIGQEEGIKALKAA--LCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred eeCcHHHHHHHHHH--HhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 45555555544321 333345799999999999999999886532 3456777654
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=77.54 E-value=3.4 Score=48.07 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhh---ccccce
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFI---STLEPF 104 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~---~~~~~~ 104 (1637)
.+-+++|+|++|+||++|+...++. .|+.+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~ 134 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVR 134 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3567889999999999998876554 354554
No 214
>KOG0994|consensus
Probab=77.47 E-value=5.6 Score=52.61 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=50.7
Q ss_pred EecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccc
Q psy2649 425 TFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASEN 504 (1637)
Q Consensus 425 ~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~ 504 (1637)
+..++++..++..++-+++.++.-...++..+.+.++-++|-.+-.+..+..+.|+.+....+..|++-...+.+|..+.
T Consensus 1661 q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1661 QGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 33445555555555555555555555555555555555555555555556666677777777777777666667676655
Q ss_pred cchHH
Q psy2649 505 VRWKD 509 (1637)
Q Consensus 505 ~rW~~ 509 (1637)
.+-..
T Consensus 1741 ~~vl~ 1745 (1758)
T KOG0994|consen 1741 ESVLD 1745 (1758)
T ss_pred HHHHH
Confidence 44433
No 215
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=77.44 E-value=15 Score=42.02 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccccCCcceee
Q psy2649 451 LKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILL 527 (1637)
Q Consensus 451 ~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~l~gd~lL 527 (1637)
....+...+.+++.+++++.+..++...+..++..+..||.+ |..|..|=...+..++.+....-|.+|+
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~-------l~~~~~~l~k~~~~~~sKV~kf~~~sl~ 267 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE-------LEMESTRLSKTIKSIKSKVEKFHGKSLL 267 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 334444444444444444444444444444555555555443 3334455555555566666555555543
No 216
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=77.42 E-value=2.9 Score=53.22 Aligned_cols=44 Identities=25% Similarity=0.418 Sum_probs=33.2
Q ss_pred hhhhhhhhhcCCCCceEEEeecCCchhhHHh-HHHhhcc--ccceEE
Q psy2649 63 HICRINRIMEAPRGNALLVGVGGSGKQSLSR-LSAFIST--LEPFQI 106 (1637)
Q Consensus 63 hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~r-laa~~~~--~~~~~i 106 (1637)
++..+.+.+..|+|-+++.|+.||||+|+.+ +..++.. ..++.+
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV 276 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEE
Confidence 4456677888999999999999999999987 5565653 234444
No 217
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=77.37 E-value=3.8 Score=46.24 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=39.6
Q ss_pred CceEEEeecCCchhhHHhHHHhh-----ccccc----eEEE--------eccc----cCcchhhhHHHHHHHHhhccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFI-----STLEP----FQIQ--------LKKN----YGIPDLKIDLASLYLKAGLKNAG 134 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~-----~~~~~----~~i~--------~~~~----y~~~~f~~dLk~~~~~ag~~~~~ 134 (1637)
+-++|.|+.|+||+|+.|..+-+ .|+-+ ..+. +..+ -+.+.|..+|+.+..-...-..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 44889999999999998887632 22211 1111 1111 12347888888766654444566
Q ss_pred EEEEecc
Q psy2649 135 IMFLMTD 141 (1637)
Q Consensus 135 ~v~l~~d 141 (1637)
.+++++|
T Consensus 110 slvllDE 116 (213)
T cd03281 110 SLVLIDE 116 (213)
T ss_pred cEEEecc
Confidence 6666666
No 218
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=77.34 E-value=4.5 Score=42.80 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.6
Q ss_pred eEEEeecCCchhhHHhHHHhhc---cccceEE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFIS---TLEPFQI 106 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i 106 (1637)
.+++|.+||||+|+++..+-.. +..++.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i 33 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4789999999999988766655 5555444
No 219
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=77.29 E-value=3.4 Score=49.23 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=42.6
Q ss_pred ceEEEeecCCchhhHHh-HHHhhccccceEE--------------------------------EeccccCcchhhhHHHH
Q psy2649 77 NALLVGVGGSGKQSLSR-LSAFISTLEPFQI--------------------------------QLKKNYGIPDLKIDLAS 123 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~r-laa~~~~~~~~~i--------------------------------~~~~~y~~~~f~~dLk~ 123 (1637)
-.+++|+.||||++++. ||..+. ..++.. .+...|+..+|.++-+.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~-~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~~ 84 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLN-GEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDALA 84 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCC-CcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHHH
Confidence 46789999999999965 555543 322211 13356888999999999
Q ss_pred HHHHhhcccccEEEEeccc
Q psy2649 124 LYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 124 ~~~~ag~~~~~~v~l~~d~ 142 (1637)
++..+--+|+ +++++--+
T Consensus 85 ~i~~i~~~gk-~pIlvGGt 102 (307)
T PRK00091 85 AIADILARGK-LPILVGGT 102 (307)
T ss_pred HHHHHHhCCC-CEEEECcH
Confidence 9988855555 44444333
No 220
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=77.12 E-value=1.8 Score=45.75 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.0
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.+++|.+||||+|+++..+-..++.++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 4789999999999999887777765553
No 221
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=77.09 E-value=3.3 Score=44.50 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=48.1
Q ss_pred hhhhhcCC-CCce-EEEeecCCchhhHHh-HHHhhccc----------------------cceEEEecc---ccCcchhh
Q psy2649 67 INRIMEAP-RGNA-LLVGVGGSGKQSLSR-LSAFISTL----------------------EPFQIQLKK---NYGIPDLK 118 (1637)
Q Consensus 67 i~RvL~~p-~gh~-lLvG~~GsGr~sl~r-laa~~~~~----------------------~~~~i~~~~---~y~~~~f~ 118 (1637)
+.+.+++- -+|+ |+.|+.|+||+++++ ||.++.+- +++.+.... +.++.+.+
T Consensus 9 L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir 88 (162)
T PF13177_consen 9 LKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR 88 (162)
T ss_dssp HHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH
Confidence 33444443 3786 778999999999966 44444432 334443332 24444444
Q ss_pred hHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccC
Q psy2649 119 IDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASG 160 (1637)
Q Consensus 119 ~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~g 160 (1637)
++..-+......+..=|+++++.+-..+ +--|+||-+=
T Consensus 89 -~i~~~~~~~~~~~~~KviiI~~ad~l~~---~a~NaLLK~L 126 (162)
T PF13177_consen 89 -EIIEFLSLSPSEGKYKVIIIDEADKLTE---EAQNALLKTL 126 (162)
T ss_dssp -HHHHHCTSS-TTSSSEEEEEETGGGS-H---HHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCceEEEeehHhhhhH---HHHHHHHHHh
Confidence 2333233334556667778777765543 4467777543
No 222
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.06 E-value=22 Score=31.47 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 428 EPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 428 ~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
..++.++..+-..+.-.+-+.++++++-+.+....+.++...+...+|.++++++-..-+.|+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777777788888888888888888888887777666665
No 223
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=77.00 E-value=2.8 Score=53.63 Aligned_cols=93 Identities=26% Similarity=0.338 Sum_probs=60.0
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhh--------HHHHHHHHhhcccccEEEEecccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKI--------DLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~--------dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
+.|. +++|+|++|+||+.|+|-.|--++-.+|.+.-+ +|-+ -.|.++.+|. ++-|+...+++-+
T Consensus 181 kiPk-GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS------~FVemfVGvGAsRVRdLF~qAk-k~aP~IIFIDEiD 252 (596)
T COG0465 181 KIPK-GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGS------DFVEMFVGVGASRVRDLFEQAK-KNAPCIIFIDEID 252 (596)
T ss_pred cccc-ceeEecCCCCCcHHHHHHHhcccCCCceeccch------hhhhhhcCCCcHHHHHHHHHhh-ccCCCeEEEehhh
Confidence 3344 478999999999999999999999999977422 4443 3677888884 5666444444432
Q ss_pred ccccceeeeehhhhccCCCCCCCCchHHHHHHHhhhcCCC
Q psy2649 144 VADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPE 183 (1637)
Q Consensus 144 i~~~~fle~in~lL~~gevp~Lf~~ee~~~i~~~~~~~~~ 183 (1637)
-+.- . .|--+|- ..||+++-++++-.++.
T Consensus 253 AvGr---~-------Rg~g~Gg-gnderEQTLNQlLvEmD 281 (596)
T COG0465 253 AVGR---Q-------RGAGLGG-GNDEREQTLNQLLVEMD 281 (596)
T ss_pred hccc---c-------cCCCCCC-CchHHHHHHHHHHhhhc
Confidence 2211 1 1111111 35899988888766643
No 224
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=76.89 E-value=2.8 Score=43.33 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=27.6
Q ss_pred hhhhhhcCCCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 66 RINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 66 ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
+|.+.| .|+..++|.|..|+||+|++|-.+...++.
T Consensus 14 ~l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 14 AFAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344444 356677789999999999999988887764
No 225
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=76.85 E-value=3.7 Score=46.93 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=58.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeee
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVII 153 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~i 153 (1637)
++-..+++|.+||||+||.++.+-+..-+-=.|.+.. ..... ..+++.+-++. .+||--.|+|+..+...+++
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g-~~~~~-~~~~~~~~~~v-----G~VfQnpd~q~~~~tV~~ev 101 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG-LDTSS-EKSLLELRQKV-----GLVFQNPDDQLFGPTVEDEV 101 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECC-eeccc-hhhHHHhhcce-----EEEEECcccccccCcHHHHH
Confidence 3448899999999999999998877665443332221 11110 23455544444 47888899999988888775
Q ss_pred hhhhccCCCCCCCCchHHHHHHHhhh
Q psy2649 154 NDMLASGEVPDLFTDDEIENIVNNIA 179 (1637)
Q Consensus 154 n~lL~~gevp~Lf~~ee~~~i~~~~~ 179 (1637)
---+-+--+ ..+|.++.+...-
T Consensus 102 afg~~n~g~----~~~e~~~rv~~~l 123 (235)
T COG1122 102 AFGLENLGL----PREEIEERVAEAL 123 (235)
T ss_pred hhchhhcCC----CHHHHHHHHHHHH
Confidence 544433333 4556666555443
No 226
>PRK08181 transposase; Validated
Probab=76.82 E-value=3.1 Score=48.60 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHh---hccccceEEEeccccCcchhhhHHHHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAF---ISTLEPFQIQLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~---~~~~~~~~i~~~~~y~~~~f~~dLk~~~ 125 (1637)
.+.|++|+|++|+||+.|+.-.++ -.|+.++-+. ..++.++|+.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~------~~~L~~~l~~a~ 153 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR------TTDLVQKLQVAR 153 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee------HHHHHHHHHHHH
Confidence 567899999999999999776553 2355565443 346667676543
No 227
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=76.74 E-value=4.7 Score=47.49 Aligned_cols=73 Identities=25% Similarity=0.285 Sum_probs=46.6
Q ss_pred hhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHh----------hccccceEEEeccccCcchhhhHHHHHHHHh
Q psy2649 59 DAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAF----------ISTLEPFQIQLKKNYGIPDLKIDLASLYLKA 128 (1637)
Q Consensus 59 ~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~----------~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~a 128 (1637)
+|.--|.++.+-=++.|--+|++|++||||+.|+-=-|. |++-++|..++++ .|.|.+++++|
T Consensus 49 eAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK-------TE~L~qa~Rra 121 (450)
T COG1224 49 EAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK-------TEALTQALRRA 121 (450)
T ss_pred HhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH-------HHHHHHHHHHh
Confidence 444455555555455555566689999999999765554 3444555555544 26699999999
Q ss_pred -hcccccEEEE
Q psy2649 129 -GLKNAGIMFL 138 (1637)
Q Consensus 129 -g~~~~~~v~l 138 (1637)
|+.=+...-+
T Consensus 122 IGvrikE~reV 132 (450)
T COG1224 122 IGVRIKETREV 132 (450)
T ss_pred hceEeeeeeEE
Confidence 7665544444
No 228
>PRK14530 adenylate kinase; Provisional
Probab=76.70 E-value=2 Score=48.52 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=24.7
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
+++++|++||||+|+++..|-..++..+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 68999999999999999888777876553
No 229
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=76.69 E-value=1.7 Score=44.92 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
|+.+..++|.+||||+||.++-+-....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 6789999999999999999987776554
No 230
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=76.67 E-value=2 Score=44.75 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=43.0
Q ss_pred hhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccce
Q psy2649 70 IMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKF 149 (1637)
Q Consensus 70 vL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~f 149 (1637)
-+..-..+++|.|..||||+++++.-....+...- + +-..+..+.-.+.+..+ ++.++++.+-+-.++..
T Consensus 16 ~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~-~-----~~~~~~~~~~~~~l~~a----~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 16 RLAKSSSPVLITGEPGTGKSLLARALHRYSGRANG-P-----FIVIDCASLPAELLEQA----KGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp HHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-------CCCCCHHCTCHHHHHHC----TTSEEEEECGCCS-HHH
T ss_pred HHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC-C-----eEEechhhCcHHHHHHc----CCCEEEECChHHCCHHH
Confidence 34467789999999999999998866665553111 1 01111111114445454 55567777755555444
Q ss_pred eeeehhhhcc
Q psy2649 150 LVIINDMLAS 159 (1637)
Q Consensus 150 le~in~lL~~ 159 (1637)
-..+-.+|..
T Consensus 86 Q~~L~~~l~~ 95 (138)
T PF14532_consen 86 QRRLLDLLKR 95 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 231
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=76.36 E-value=3.8 Score=49.57 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=62.5
Q ss_pred hhhhhhcCC-CCce-EEEeecCCchhhHHhHHHhhccc------------------------cceEEEec-cccCcchhh
Q psy2649 66 RINRIMEAP-RGNA-LLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLK-KNYGIPDLK 118 (1637)
Q Consensus 66 ri~RvL~~p-~gh~-lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~-~~y~~~~f~ 118 (1637)
++.+.+... -.|+ |+.|+.|+||+++++.-|...-| ++..+... +..++
T Consensus 17 ~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~i---- 92 (329)
T PRK08058 17 MLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKK---- 92 (329)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCH----
Confidence 334444443 3788 77899999999997655443322 23333221 22232
Q ss_pred hHHHHHHHHh---hcccccEEEEeccccccccceeeeehhhhccCC-----CCCCCCchHHHHHHHhhhcCCCc
Q psy2649 119 IDLASLYLKA---GLKNAGIMFLMTDSQVADEKFLVIINDMLASGE-----VPDLFTDDEIENIVNNIAAEPEI 184 (1637)
Q Consensus 119 ~dLk~~~~~a---g~~~~~~v~l~~d~~i~~~~fle~in~lL~~ge-----vp~Lf~~ee~~~i~~~~~~~~~~ 184 (1637)
|++|++.... ...+..-|+++++.+-... +--|.||.+=| +-=+|..+....|+..++..+..
T Consensus 93 d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~ 163 (329)
T PRK08058 93 DQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---SAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQV 163 (329)
T ss_pred HHHHHHHHHHhhCCcccCceEEEeehHhhhCH---HHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhcee
Confidence 4555555443 3666677788887654432 24566776433 22345566666776666655543
No 232
>PHA02244 ATPase-like protein
Probab=76.35 E-value=4.9 Score=48.58 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=55.2
Q ss_pred HHHHHHhcCcEEEEecccccccchhhhhhhhhhhcCcceeEecccccccCCCceeeeeecccC----------CCCCccc
Q psy2649 605 QIEKAVMSGFVLLIENIGESVDPVLDNLIGRNLIRKGKVVKIGEKEIDYNPNFKLILHTKLAN----------PHYKPEM 674 (1637)
Q Consensus 605 ~le~ai~~G~~lli~dv~e~~dp~L~~ll~~~~~~~g~~I~ig~~~i~~~p~F~L~l~T~~~~----------~~~~p~~ 674 (1637)
.+-.|++.|..|++.+++ ...|.....|...+- ...+.+.+..+..||+||++.+++.+. ..+++.+
T Consensus 173 pLl~A~~~GgvLiLDEId-~a~p~vq~~L~~lLd--~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~Al 249 (383)
T PHA02244 173 PFYEAFKKGGLFFIDEID-ASIPEALIIINSAIA--NKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGAT 249 (383)
T ss_pred HHHHHhhcCCEEEEeCcC-cCCHHHHHHHHHHhc--cCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHH
Confidence 566788999999999996 555555444433221 235666677888999999999988632 3456677
Q ss_pred cccceEEEEEe
Q psy2649 675 QAQTTLINFTV 685 (1637)
Q Consensus 675 ~~~~~vInftv 685 (1637)
..|+.+|+|.-
T Consensus 250 lDRFv~I~~dy 260 (383)
T PHA02244 250 LDRFAPIEFDY 260 (383)
T ss_pred HhhcEEeeCCC
Confidence 78888888765
No 233
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=76.21 E-value=2.4 Score=55.71 Aligned_cols=103 Identities=17% Similarity=0.314 Sum_probs=65.9
Q ss_pred hhhhhhhhhhhhhhhhhh-------hcCCCCceEEEeecCCchhhHHh-HHHhhcc--ccceEEEeccccCcchhhhH--
Q psy2649 53 NLVLFEDAMSHICRINRI-------MEAPRGNALLVGVGGSGKQSLSR-LSAFIST--LEPFQIQLKKNYGIPDLKID-- 120 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~Rv-------L~~p~gh~lLvG~~GsGr~sl~r-laa~~~~--~~~~~i~~~~~y~~~~f~~d-- 120 (1637)
.++==++|+.+|++.-|- -+.|-|..|++|+.|+|||-|+| ||.++-| -.+..++|| +|.|-
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMS------Ey~EkHs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMS------EYMEKHS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechH------HHHHHHH
Confidence 455668899999876654 34688999999999999999977 6667765 345555544 44432
Q ss_pred ---HH------------HHHHHhhcccccE-EEEeccccccccceeeeehhhhccCCC
Q psy2649 121 ---LA------------SLYLKAGLKNAGI-MFLMTDSQVADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 121 ---Lk------------~~~~~ag~~~~~~-v~l~~d~~i~~~~fle~in~lL~~gev 162 (1637)
|. ..|+.| +..+|. |+||+|=+=.++..+..+=.+|-.|..
T Consensus 566 VSrLIGaPPGYVGyeeGG~LTEa-VRr~PySViLlDEIEKAHpdV~nilLQVlDdGrL 622 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGGQLTEA-VRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRL 622 (786)
T ss_pred HHHHhCCCCCCceeccccchhHh-hhcCCCeEEEechhhhcCHHHHHHHHHHhcCCee
Confidence 11 345555 667774 677777544455444433334444444
No 234
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=76.15 E-value=3 Score=52.13 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=22.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhc-----cccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFIS-----TLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~-----~~~~~~i 106 (1637)
.++|.|.+|+|||.|++-.++-. +..++-+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 47899999999999998766533 3455544
No 235
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.03 E-value=2.8 Score=52.68 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=38.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHHHHHHHHhh------cccccEEEEeccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDLASLYLKAG------LKNAGIMFLMTDSQV 144 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag------~~~~~~v~l~~d~~i 144 (1637)
-.++|.|++|+|||.|++-.++-. +..++.+.. .+|..++...+..-. .....-+++++|-|.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~------~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~ 213 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS------ELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEV 213 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH------HHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhh
Confidence 358999999999999999877643 456554432 245555554443210 012334677777554
No 236
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=76.00 E-value=2.2 Score=44.49 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++++|++||||+|+++--+--.++.++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 478999999999998876655554433
No 237
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=75.55 E-value=2.1 Score=46.72 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=24.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
+++....++|++||||+|+.+..+-+.+..
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 356678899999999999999888877653
No 238
>PRK06547 hypothetical protein; Provisional
Probab=75.40 E-value=2.7 Score=45.71 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=22.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
-+++.|.+||||+|+++.-+-..+..++..
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 344459999999999887777667766644
No 239
>PRK04040 adenylate kinase; Provisional
Probab=75.27 E-value=3.1 Score=45.92 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=28.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhc--cccceEEEeccccCcchhhhHHHHHHHHhhc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFIS--TLEPFQIQLKKNYGIPDLKIDLASLYLKAGL 130 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~--~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~ 130 (1637)
.++++|.+||||+|+++..+-.. ++.++ +|.+-++......|.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~-----------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYKIV-----------NFGDVMLEVAKEEGL 48 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCeEE-----------ecchHHHHHHHHcCC
Confidence 36789999999999988666555 55543 333445666655554
No 240
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.24 E-value=17 Score=47.63 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHH
Q psy2649 438 NAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKD 509 (1637)
Q Consensus 438 e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 509 (1637)
..++.+.+..+...+..+..+..+...++.+.+++..+...++.++..+..++..+..-+..+..|+.+|..
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~ 407 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444455555555666666666666666666643
No 241
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=75.07 E-value=4.3 Score=48.88 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=58.0
Q ss_pred CceE-EEeecCCchhhHHhHHHhhccc-------------------------cceEEEec----------cccCcchhhh
Q psy2649 76 GNAL-LVGVGGSGKQSLSRLSAFISTL-------------------------EPFQIQLK----------KNYGIPDLKI 119 (1637)
Q Consensus 76 gh~l-LvG~~GsGr~sl~rlaa~~~~~-------------------------~~~~i~~~----------~~y~~~~f~~ 119 (1637)
.|++ +.|+.|+||+++++.-|-...| +++.+.+. +..++.+.|+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 6654 7899999999998876665433 34445442 1245566665
Q ss_pred HHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccC-----CCCCCCCchHHHHHHHhhhcCC
Q psy2649 120 DLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASG-----EVPDLFTDDEIENIVNNIAAEP 182 (1637)
Q Consensus 120 dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~g-----evp~Lf~~ee~~~i~~~~~~~~ 182 (1637)
+.+.+......+..-|+++++.+-.++ +-.|.||..= .+.=++.....+.+...++..+
T Consensus 101 -l~~~~~~~p~~~~~kV~iiEp~~~Ld~---~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc 164 (325)
T PRK08699 101 -IIDNVYLTSVRGGLRVILIHPAESMNL---QAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC 164 (325)
T ss_pred -HHHHHhhCcccCCceEEEEechhhCCH---HHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHh
Confidence 333333344556666667788776665 3344444321 2333455555555555554443
No 242
>KOG1962|consensus
Probab=75.00 E-value=8.5 Score=42.64 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEE 485 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~ 485 (1637)
..++++.++.+++....+|+..+.+..+++++.++++.+|+.+.+|-++|+++++-
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 45677778888888888888888888888888888888888888888888877653
No 243
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=74.92 E-value=2.3 Score=54.34 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
++.-+||.|++||||+|++|+.|.-.|+++.+-
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 345677899999999999999999999998874
No 244
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=74.90 E-value=1.8 Score=51.78 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
+|..+.|+|++||||+|+.|+-|-+-.-+==+|
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I 60 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 567888899999999999998887765443333
No 245
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=74.83 E-value=4.4 Score=49.22 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCCCceEEEeecCCchhhH-HhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSL-SRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl-~rlaa~~~ 99 (1637)
.|+|-++|||+.|.||||. +||||+..
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4599999999999999865 99999977
No 246
>PRK05642 DNA replication initiation factor; Validated
Probab=74.81 E-value=8.2 Score=44.24 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=23.3
Q ss_pred CCceEEEeecCCchhhHHhHHHhh---ccccceEEE
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFI---STLEPFQIQ 107 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~---~~~~~~~i~ 107 (1637)
...++|.|.+|+|||.|++-+|+- .+..+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 357889999999999997765542 245555443
No 247
>KOG0996|consensus
Probab=74.75 E-value=47 Score=45.10 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=24.7
Q ss_pred hHHHHHHHHhhcccccEEEEeccc------------c-ccccceeeeehhhhccC
Q psy2649 119 IDLASLYLKAGLKNAGIMFLMTDS------------Q-VADEKFLVIINDMLASG 160 (1637)
Q Consensus 119 ~dLk~~~~~ag~~~~~~v~l~~d~------------~-i~~~~fle~in~lL~~g 160 (1637)
.|+-++|++.|++-..=-|||=.- + =.++++|||+-.++.++
T Consensus 209 ~~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ 263 (1293)
T KOG0996|consen 209 KDVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTN 263 (1293)
T ss_pred HHHHHHHHhcCCCCccceeeeehhhHHHHHhcCCCCCCCCcchHHHHHHHHhccc
Confidence 346677778887755545554221 1 12467777777777644
No 248
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=74.72 E-value=2.1 Score=48.11 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=35.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcccc--ceEEEeccccCcchhhhHHHHHH
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLE--PFQIQLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~--~~~i~~~~~y~~~~f~~dLk~~~ 125 (1637)
.|+-|-.++|+.||||+||.++++--.--. ... -..+.++-.+.-.|||+-+
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~-~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT-LLGRRFGKGETIFELRKRI 108 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhcccCCCCCcee-eeeeeccCCcchHHHHHHh
Confidence 589999999999999999999987532110 011 1344566666657788633
No 249
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=74.49 E-value=2.4 Score=50.72 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=43.7
Q ss_pred hhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccc--cceEEEeccccCcc-hhhhHHHHHHHHh-hcccc
Q psy2649 59 DAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTL--EPFQIQLKKNYGIP-DLKIDLASLYLKA-GLKNA 133 (1637)
Q Consensus 59 ~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~--~~~~i~~~~~y~~~-~f~~dLk~~~~~a-g~~~~ 133 (1637)
+|..-|..+.+-=+..+--+||+|++||||+.|+-=-|.-.|- .+..+..+-=|+.. .=.|-|-+++++| |+.=+
T Consensus 34 eAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa~RraIGvrIk 112 (398)
T PF06068_consen 34 EAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQAFRRAIGVRIK 112 (398)
T ss_dssp HHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHHHHHhheEEEE
Confidence 5556666666666677777888999999999997766665553 33333333334432 1125588888888 55433
No 250
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=74.46 E-value=3.7 Score=46.22 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=62.9
Q ss_pred hhhhhhhhhh------hhhhhhhcCCC-------CceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhh
Q psy2649 55 VLFEDAMSHI------CRINRIMEAPR-------GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKI 119 (1637)
Q Consensus 55 vlf~~~i~hi------~ri~RvL~~p~-------gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~ 119 (1637)
+.|+|+|-|= .=|.+-|..|- .|+|.-|++|+||+-++|-.|.=..-.++.++.+.-.| +.|=-.
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar 197 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGAR 197 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHH
Confidence 3455555442 22345566773 68999999999999999998888888888776554322 234455
Q ss_pred HHHHHHHHhhcccccEEEEecccc
Q psy2649 120 DLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 120 dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
.+++++.+| -+--||++++++-+
T Consensus 198 ~Ihely~rA-~~~aPcivFiDE~D 220 (368)
T COG1223 198 RIHELYERA-RKAAPCIVFIDELD 220 (368)
T ss_pred HHHHHHHHH-HhcCCeEEEehhhh
Confidence 688999999 57788888888754
No 251
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.18 E-value=11 Score=47.41 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHH
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKD 509 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 509 (1637)
++.++++.+++.....+....++++...++++++.|+.++....++.+.|+.+.+......+.+..=.+.|..+......
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777777777778888888888888887787888777777776666655555555555555555
Q ss_pred HHHHHhhccc
Q psy2649 510 SVLGLQQSAL 519 (1637)
Q Consensus 510 ~~~~l~~~~~ 519 (1637)
.+..++..+.
T Consensus 221 ri~~LEedi~ 230 (546)
T PF07888_consen 221 RIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 252
>PRK06526 transposase; Provisional
Probab=74.09 E-value=3.2 Score=48.14 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=28.2
Q ss_pred CCCceEEEeecCCchhhHHhH-HHhh--ccccceEEEeccccCcchhhhHHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRL-SAFI--STLEPFQIQLKKNYGIPDLKIDLAS 123 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rl-aa~~--~~~~~~~i~~~~~y~~~~f~~dLk~ 123 (1637)
.+.|++|+|++|+||+.|+.= +..+ .|+.+.- .+..+|.++++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f------~t~~~l~~~l~~ 143 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF------ATAAQWVARLAA 143 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh------hhHHHHHHHHHH
Confidence 356899999999999999763 3333 3444432 223466666654
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=73.98 E-value=5.1 Score=48.74 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred hhhhhcCCC-Cc-eEEEeecCCchhhHHh-HHHhhc
Q psy2649 67 INRIMEAPR-GN-ALLVGVGGSGKQSLSR-LSAFIS 99 (1637)
Q Consensus 67 i~RvL~~p~-gh-~lLvG~~GsGr~sl~r-laa~~~ 99 (1637)
+.+.++..+ .| .|+.|+.|+||+|+++ ||.++.
T Consensus 35 L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 35 LAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred HHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 334444555 35 5668999999999987 454543
No 254
>PRK01184 hypothetical protein; Provisional
Probab=73.96 E-value=3.6 Score=45.17 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++|+|.+||||+|+++++.. .|+.++
T Consensus 4 i~l~G~~GsGKsT~a~~~~~-~g~~~i 29 (184)
T PRK01184 4 IGVVGMPGSGKGEFSKIARE-MGIPVV 29 (184)
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCcEE
Confidence 57899999999999997653 355444
No 255
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.81 E-value=7 Score=48.07 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.2
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS 99 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~ 99 (1637)
.+.++++|+.|+||||+ ++||++..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999987 77888765
No 256
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=73.69 E-value=4.6 Score=52.44 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHh--h-ccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccccccccee
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAF--I-STLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFL 150 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~--~-~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fl 150 (1637)
-.||++++|..|+||+++..+-+. + .|-.++-++...+ .++.+.+..+++++|-.+. ..++ +...|+.-
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD---~el~~~~~~~~~~~GR~~~-f~~~----~~~~P~~S 250 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGD---ADLLKRMYAEAKRAGRLDE-FYVF----HLGWPEIS 250 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC---HHHHHHHHHHHHHhCCCCc-eEEe----cCCCCccc
Confidence 469999999999999999766432 1 2445555555443 3677788888888886444 3332 23445555
Q ss_pred eeehhhhccCCCCCCCCchHHHHH
Q psy2649 151 VIINDMLASGEVPDLFTDDEIENI 174 (1637)
Q Consensus 151 e~in~lL~~gevp~Lf~~ee~~~i 174 (1637)
-.+|-|-+-| ..+|+-.-
T Consensus 251 ~~~Npl~n~~------~~~Evasr 268 (643)
T TIGR03754 251 ARYNAIGNFG------RISEVATR 268 (643)
T ss_pred cccChhhccC------ChHHHHHH
Confidence 6788775544 44565543
No 257
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=73.61 E-value=4.6 Score=50.96 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=41.3
Q ss_pred hcCCCC---ceEEEeecCCchhhHHhHHHhh-----ccccceEEEeccccCcchhhhHHHHHHHHhh--c------cccc
Q psy2649 71 MEAPRG---NALLVGVGGSGKQSLSRLSAFI-----STLEPFQIQLKKNYGIPDLKIDLASLYLKAG--L------KNAG 134 (1637)
Q Consensus 71 L~~p~g---h~lLvG~~GsGr~sl~rlaa~~-----~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag--~------~~~~ 134 (1637)
...|+. .++|.|..|+|||.|++-.++- .++.++-+. ..+|..++...+.... + ....
T Consensus 134 a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (450)
T PRK14087 134 SKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTHKEIEQFKNEICQN 207 (450)
T ss_pred HhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhhhHHHHHHHHhccC
Confidence 345543 4889999999999998876662 235555332 2356666555444310 1 1223
Q ss_pred EEEEecccccc
Q psy2649 135 IMFLMTDSQVA 145 (1637)
Q Consensus 135 ~v~l~~d~~i~ 145 (1637)
-+++++|-|..
T Consensus 208 dvLiIDDiq~l 218 (450)
T PRK14087 208 DVLIIDDVQFL 218 (450)
T ss_pred CEEEEeccccc
Confidence 47788887654
No 258
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=73.57 E-value=3.4 Score=53.43 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=43.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEE--ec-----------cccCcchhhhHHHHHHHHhhcccccEEE
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ--LK-----------KNYGIPDLKIDLASLYLKAGLKNAGIMF 137 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~--~~-----------~~y~~~~f~~dLk~~~~~ag~~~~~~v~ 137 (1637)
.+.++|||..||||+|+.|..|-..++.++..+ +. ..++...||+-=.+++... ...++.|+
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~-~~~~~~VI 80 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADM-LEDFDGIF 80 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeEE
Confidence 367899999999999999999999999999764 11 2345556665444555544 22334444
No 259
>KOG0651|consensus
Probab=73.57 E-value=5.1 Score=46.39 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=48.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
|---++|-|++|+||+-++|++|--.++.++....+. .| +.+=---+|+.+..| -+-.|+|++++|-+-.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky-iGEsaRlIRemf~yA-~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY-IGESARLIRDMFRYA-REVIPCIIFMDEIDAI 237 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh-cccHHHHHHHHHHHH-hhhCceEEeehhhhhh
Confidence 3344788999999999999999999999988664321 11 111122377777777 4667788777775443
No 260
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=73.50 E-value=4.1 Score=53.31 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=25.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
.+.|++|+|.+|+||++++|..+...+..
T Consensus 36 ~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 36 QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 45699999999999999999888877765
No 261
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=73.48 E-value=5 Score=47.16 Aligned_cols=72 Identities=15% Similarity=0.288 Sum_probs=47.9
Q ss_pred eEEEeecCCchhhHH-hHHHhhccccceEE--------------------------------EeccccCcchhhhHHHHH
Q psy2649 78 ALLVGVGGSGKQSLS-RLSAFISTLEPFQI--------------------------------QLKKNYGIPDLKIDLASL 124 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~-rlaa~~~~~~~~~i--------------------------------~~~~~y~~~~f~~dLk~~ 124 (1637)
++++|+.||||++++ +||... +..++.. ++...|+..+|..+.+++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~-~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL-NAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC-CCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 478999999999995 455443 4333332 233568889999999999
Q ss_pred HHHhhcccccEEEEeccccccccceeeeehhhhc
Q psy2649 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLA 158 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~ 158 (1637)
+...--.|+ +++++--+.+ |+++|+.
T Consensus 81 i~~~~~~g~-~pi~vGGTg~-------Yi~all~ 106 (287)
T TIGR00174 81 IADITARGK-IPLLVGGTGL-------YLKALLE 106 (287)
T ss_pred HHHHHhCCC-CEEEEcCcHH-------HHHHHHc
Confidence 988855554 5555544433 4666665
No 262
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=73.45 E-value=7 Score=46.30 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=71.3
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|.+-.+.++.++.+...+. .++.+-+.+.-- -..-+-+.|..+++-.=|.|.+++||+|+.++|+-+-|..-
T Consensus 149 ~~~~~Gtle~W~~~v~~~~~----~n~~~~~~l~~a---fa~pLL~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 149 GYEPKGTLEEWQEMVAALAK----GNPRLMLALCAA---FAAPLLSLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred cccCCcCHHHHHHHHHHHHc----cChHHHHHHHHH---HHHHHHHHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 57777888887765544333 233343333222 22333377778888888999999999999999999988654
Q ss_pred eEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccc
Q psy2649 104 FQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEK 148 (1637)
Q Consensus 104 ~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~ 148 (1637)
.. ...|+..--. +.+.......+.++++|.+..++.
T Consensus 222 ---~l-----~~sw~~T~n~-le~~a~~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 222 ---GL-----IRSWNSTDNG-LERTAAAHNDLPLVLDELSQADPK 257 (286)
T ss_pred ---hh-----hhcchhhHHH-HHHHHHHcCCcceEehhccccchh
Confidence 11 2356544444 444445566788999997665543
No 263
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=73.37 E-value=2.9 Score=54.65 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=34.9
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccc-eEEEeccccCcchhhhHHHHHHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEP-FQIQLKKNYGIPDLKIDLASLYL 126 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~-~~i~~~~~y~~~~f~~dLk~~~~ 126 (1637)
++|++++|++|+||+|++|..+....+.- ..+-.-.+ ...+|++.++.+..
T Consensus 50 ~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~ 101 (637)
T PRK13765 50 RRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVPA 101 (637)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHHH
Confidence 36999999999999999988777666542 22211122 34577777887763
No 264
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=72.94 E-value=6.6 Score=45.06 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=67.5
Q ss_pred hheeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh----
Q psy2649 416 NIITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID---- 491 (1637)
Q Consensus 416 Ai~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~---- 491 (1637)
+--+|..+..++.=....++.++..+..+..++..++..|..+...+..+...-.++......++.++.....++.
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777788888888888888888888777777777777776666665544444444444433333
Q ss_pred ----------hhhHhhhcccccccchHHHHHHHhhcccc
Q psy2649 492 ----------LADRLVNGLASENVRWKDSVLGLQQSALT 520 (1637)
Q Consensus 492 ----------ra~~Li~~L~~E~~rW~~~~~~l~~~~~~ 520 (1637)
+-+.-+..|.++-..|+.....+...+..
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666777766666665543
No 265
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.72 E-value=6.8 Score=44.49 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred hhhhhhhhhcCCCCceEEEeecCCchhhHHh-HHHhhccccceEEEeccc-cCcchhh----hHH---------------
Q psy2649 63 HICRINRIMEAPRGNALLVGVGGSGKQSLSR-LSAFISTLEPFQIQLKKN-YGIPDLK----IDL--------------- 121 (1637)
Q Consensus 63 hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~r-laa~~~~~~~~~i~~~~~-y~~~~f~----~dL--------------- 121 (1637)
-+.++.--++..+|-+.++|..||||+.+.| +++-.++-++.-+.+.+. .+...+. .||
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~ 118 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQI 118 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHH
Confidence 3567777788899999999999999999999 667777766655433322 2211111 111
Q ss_pred HHHHHHhhccccc-EEEEeccccccccceeeeehhhh
Q psy2649 122 ASLYLKAGLKNAG-IMFLMTDSQVADEKFLVIINDML 157 (1637)
Q Consensus 122 k~~~~~ag~~~~~-~v~l~~d~~i~~~~fle~in~lL 157 (1637)
-+.+...-.+++. ++++++|.+....+-||.+--|.
T Consensus 119 ~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~ 155 (269)
T COG3267 119 DRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLT 155 (269)
T ss_pred HHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHH
Confidence 1223333355666 99999999998877777554443
No 266
>PTZ00088 adenylate kinase 1; Provisional
Probab=72.71 E-value=2.5 Score=48.09 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=25.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
.++++|++||||+|+++..|-..++..+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999888878766543
No 267
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=72.70 E-value=2.6 Score=45.99 Aligned_cols=33 Identities=36% Similarity=0.404 Sum_probs=19.4
Q ss_pred hhhcCCCCceEEEeecCCchhhHHh-HHHhhccc
Q psy2649 69 RIMEAPRGNALLVGVGGSGKQSLSR-LSAFISTL 101 (1637)
Q Consensus 69 RvL~~p~gh~lLvG~~GsGr~sl~r-laa~~~~~ 101 (1637)
+.-.....+++++|.+|+||+++.+ +...+..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4444556778999999999999977 66555554
No 268
>PRK02224 chromosome segregation protein; Provisional
Probab=72.67 E-value=12 Score=52.04 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=22.5
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhh
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
+..+.|=-+++|+.|+||+|+..-.+|.
T Consensus 19 ~~f~~g~~~i~G~Ng~GKStil~ai~~~ 46 (880)
T PRK02224 19 LRLEDGVTVIHGVNGSGKSSLLEACFFA 46 (880)
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999997666664
No 269
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=72.59 E-value=2.5 Score=41.86 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.7
Q ss_pred CCceEEEeecCCchhhHHhHHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
+-...|+|++||||+||.++..
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3457889999999999999965
No 270
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=72.57 E-value=2.7 Score=46.07 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=19.3
Q ss_pred eEEEeecCCchhhHHhHHHhhccccc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
++++|++||||+|+++..+--.|+..
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~~ 31 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTH 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 56799999999999865554445443
No 271
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=72.56 E-value=6.2 Score=52.04 Aligned_cols=97 Identities=18% Similarity=0.358 Sum_probs=67.1
Q ss_pred HHHhHHHH------HHHhhhhhhhhhhhhhhhhhhhhcC-CCCceEEEeecCCchhhHHh-HHHh---------hccccc
Q psy2649 41 TMTSYNEI------VASMNLVLFEDAMSHICRINRIMEA-PRGNALLVGVGGSGKQSLSR-LSAF---------ISTLEP 103 (1637)
Q Consensus 41 ~l~~yn~~------~~~~~lvlf~~~i~hi~ri~RvL~~-p~gh~lLvG~~GsGr~sl~r-laa~---------~~~~~~ 103 (1637)
.|+.|... ..+++=|+-.+ +-|.|+.+||.. -.-|-+|||.+|+|||.++- ||.. +.+.++
T Consensus 152 ~L~~y~~dlt~~Ar~gklDPvIGRd--~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 152 ALEKYTRDLTELAREGKLDPVIGRD--EEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred hHHHHhhhhHHHHhcCCCCCCcChH--HHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 46666642 13566566555 357788888875 45899999999999999965 4444 556677
Q ss_pred eEEEec-----cccCcchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 104 FQIQLK-----KNYGIPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 104 ~~i~~~-----~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
+.++++ ..| -.+|.+-||.++...--.+ ++++++++
T Consensus 230 ~sLD~g~LvAGaky-RGeFEeRlk~vl~ev~~~~-~vILFIDE 270 (786)
T COG0542 230 YSLDLGSLVAGAKY-RGEFEERLKAVLKEVEKSK-NVILFIDE 270 (786)
T ss_pred EEecHHHHhccccc-cCcHHHHHHHHHHHHhcCC-CeEEEEec
Confidence 777644 223 2599999999998875444 77777665
No 272
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=72.47 E-value=4 Score=53.05 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=31.7
Q ss_pred hhhhhhhhhhcCCCCceEEEeecCCchhhHH-hHHHhhcc
Q psy2649 62 SHICRINRIMEAPRGNALLVGVGGSGKQSLS-RLSAFIST 100 (1637)
Q Consensus 62 ~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~-rlaa~~~~ 100 (1637)
+++..+.+.+..|+|-+|+.|+.||||+|+. .+..+++.
T Consensus 303 ~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~ 342 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNT 342 (564)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4566778889999999999999999999884 55566653
No 273
>PRK00300 gmk guanylate kinase; Provisional
Probab=72.43 E-value=2.5 Score=47.25 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+--.+|+|++||||+||++..+-...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4777889999999999999998887654
No 274
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.25 E-value=9.2 Score=41.54 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=19.9
Q ss_pred heeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 417 IITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDK 468 (1637)
Q Consensus 417 i~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~ 468 (1637)
+-.|..+.....-.+.++++.+++-.....++.+++.++.++++++..|..+
T Consensus 127 v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 127 VPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333333333333333333333333333333333333333
No 275
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=72.10 E-value=2.8 Score=45.91 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=20.8
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++++|++||||+|+++.-|.-.++..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i 28 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 478999999999997766665565444
No 276
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=71.92 E-value=2.4 Score=37.43 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=18.4
Q ss_pred CCC-ceEEEeecCCchhhHHhHHHh
Q psy2649 74 PRG-NALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 74 p~g-h~lLvG~~GsGr~sl~rlaa~ 97 (1637)
+.| ..++.|..||||+|+.--..+
T Consensus 21 ~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 21 PRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356 788899999999999654443
No 277
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=71.80 E-value=2.5 Score=47.67 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.|+-+-+..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 566778999999999999999987753
No 278
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.74 E-value=21 Score=37.60 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 444 ASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 444 ~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
.+.+.++++.++.+++++++.|+.+++...++...++++++..-.=++||.+++.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555666666666666666666666666677777777777788877763
No 279
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.71 E-value=17 Score=40.53 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=41.2
Q ss_pred ecchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh
Q psy2649 426 FVEPKRKALAAANAELAAASQK----LAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLA 493 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~----l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 493 (1637)
.+.-++++++++++++++..++ ..++++++++.+..+.+|+++.+++.++.+.++++.+..+.++++.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666655444 3444555566666666677777777666666666666666665544
No 280
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=71.64 E-value=2.7 Score=46.54 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=19.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.++|+|++|++||||++++|-...+.
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 46899999999999999988777653
No 281
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.63 E-value=16 Score=33.72 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDL 492 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 492 (1637)
++.+-+.++++..+.......-......+..+..++.++..+........+..+.++...+.++.+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455544444444444444444444444444444444444444444445555555555444
No 282
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.35 E-value=16 Score=41.35 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhh
Q psy2649 441 LAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQ 516 (1637)
Q Consensus 441 l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~ 516 (1637)
+.....++...-..++.-+..|++++.+.+.+.+|+....+++.++..-+..-+.+|..+..|+.+=.+.+..+..
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555666666666666666666666677666666666677777776666666555555443
No 283
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.33 E-value=20 Score=32.76 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhc
Q psy2649 441 LAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQS 517 (1637)
Q Consensus 441 l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~ 517 (1637)
+++.+.+.+.+-+.+..++.++++|+++......+...|+.+.+..+ .|+..|...+..+=.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~--------------~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK--------------QERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555555555554433 5666777776655433
No 284
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=71.27 E-value=2.6 Score=50.76 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhhccccccc--eeecccHHHHh------hcccccCC-----CchhhhcccccccchhHHHHHHHHHHHHH
Q psy2649 1417 LMSEIKRSLKELNLGLKGE--LTITTDMEALE------YSIFMDTV-----PPSWEKRAYPSMLGLGGWFADLMLRLKEL 1483 (1637)
Q Consensus 1417 Ll~~I~~sL~~l~~~l~G~--~~~s~~l~~l~------~~L~~~~V-----P~~W~~~~~~s~~~l~~Wl~dL~~R~~~l 1483 (1637)
|=..++..|..+++.+ |. +-.|.+-++-+ --+..|++ |..|.. .|-..|+.+|+-..+++
T Consensus 171 LR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~------~P~~~fVA~FiG~~N~l 243 (352)
T COG3842 171 LREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE------RPATRFVADFIGESNIF 243 (352)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh------CcchHHHHHHhCcceee
Confidence 4555666666666655 32 22344433221 11223433 555522 23356777777666555
Q ss_pred hh
Q psy2649 1484 EN 1485 (1637)
Q Consensus 1484 ~~ 1485 (1637)
..
T Consensus 244 ~~ 245 (352)
T COG3842 244 EG 245 (352)
T ss_pred ee
Confidence 44
No 285
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=71.26 E-value=2.8 Score=45.59 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=22.9
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
--.+|.|.+||||+|++|.-+-..+..++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 35678999999999999977776665544
No 286
>PRK12608 transcription termination factor Rho; Provisional
Probab=71.18 E-value=6.7 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=20.5
Q ss_pred CCceEEEeecCCchhhHHhH-HHhhcc
Q psy2649 75 RGNALLVGVGGSGKQSLSRL-SAFIST 100 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rl-aa~~~~ 100 (1637)
+.+++++|.+|+||+||.+- +..+..
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999874 555543
No 287
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=71.04 E-value=3 Score=46.01 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=22.9
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
++++|.+||||+|+++..|-..++..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999998777666766554
No 288
>KOG3347|consensus
Probab=71.03 E-value=3.3 Score=42.85 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=40.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
+-|+|+.|-+|+||+|++.-.|-+.+++.+.| ++ + .|+==.--|.+++--|.+++|..+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd------~---vkEn~l~~gyDE~y~c~i~DEdkv~ 66 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SD------L---VKENNLYEGYDEEYKCHILDEDKVL 66 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hh------H---HhhhcchhcccccccCccccHHHHH
Confidence 56899999999999999988889999887754 32 1 2221112355555556666655444
No 289
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=71.01 E-value=7.5 Score=42.79 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=18.7
Q ss_pred Cc-eEEEeecCCchhhHHhHHHhhc
Q psy2649 76 GN-ALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 76 gh-~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+| +|+.|+.|+||+++++.-+...
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45 7778999999999987665543
No 290
>PRK14531 adenylate kinase; Provisional
Probab=70.87 E-value=3.1 Score=45.74 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=22.7
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+++++|.+||||+|+++..|--.|+..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 5889999999999998877666666654
No 291
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=70.72 E-value=5.5 Score=41.60 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=24.1
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
..++|.+||||+|+++.-|--.++.++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 468999999999998877766678777654
No 292
>KOG2228|consensus
Probab=70.20 E-value=4.6 Score=47.36 Aligned_cols=98 Identities=27% Similarity=0.446 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhh--hhcCCCCceEEEeecCCchhhH--HhHHHhhcc--ccc
Q psy2649 30 DWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINR--IMEAPRGNALLVGVGGSGKQSL--SRLSAFIST--LEP 103 (1637)
Q Consensus 30 ~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~R--vL~~p~gh~lLvG~~GsGr~sl--~rlaa~~~~--~~~ 103 (1637)
|...+++++.++|-- ...+|+-+.+.-.|+.++-| |+..-+-.+++||+.||||+.+ ++|+- +.+ -.+
T Consensus 7 dl~siqr~l~~rl~~-----~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~ 80 (408)
T KOG2228|consen 7 DLSSIQRILRERLCG-----PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENF 80 (408)
T ss_pred hHHHHHHHHHHHhcC-----CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeE
Confidence 456777777765543 45677777777788877654 3445667788999999999998 67766 332 356
Q ss_pred eEEEeccccCcchhhhHHHHHHHHhhcccccE
Q psy2649 104 FQIQLKKNYGIPDLKIDLASLYLKAGLKNAGI 135 (1637)
Q Consensus 104 ~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~ 135 (1637)
+.+.....|.. | +--||.+-+.-..++..+
T Consensus 81 l~v~Lng~~~~-d-k~al~~I~rql~~e~~~~ 110 (408)
T KOG2228|consen 81 LLVRLNGELQT-D-KIALKGITRQLALELNRI 110 (408)
T ss_pred EEEEECccchh-h-HHHHHHHHHHHHHHHhhh
Confidence 66666666654 1 234777666666666555
No 293
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=70.18 E-value=26 Score=36.18 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhccccccc---chH
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENV---RWK 508 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~---rW~ 508 (1637)
-++..+...++.++..+...+..+......|..|.....+..+...+|..+.+.+...+.+.++-|+.|-.|.+ +|.
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHh
Confidence 35677888889999999999999999999999999999888888899999999999999999999999988866 785
Q ss_pred H
Q psy2649 509 D 509 (1637)
Q Consensus 509 ~ 509 (1637)
.
T Consensus 99 ~ 99 (135)
T TIGR03495 99 D 99 (135)
T ss_pred c
Confidence 3
No 294
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.02 E-value=15 Score=39.74 Aligned_cols=67 Identities=31% Similarity=0.385 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHhhhhhhhhhhH
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKF--DAAVKEKLFCQNQAEECAEKIDLADR 495 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~--~~~~~e~~~l~~~~~~~~~rl~ra~~ 495 (1637)
|..+++..+..++...++++..++.++..++.++..|.... +++..+..+++.+++..+.||+....
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888899999999999999999999998888866 55667777888888888888776543
No 295
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=70.01 E-value=27 Score=33.98 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccc
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLAS 502 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 502 (1637)
+.+++.........++...++.+..++.+...-..+|-++++.++.+..++..+...+.+...+++.|.+
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444444444444455555555555555555666667778888888888888888888888888876
No 296
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.96 E-value=14 Score=43.67 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=30.7
Q ss_pred Cc-eEEEeecCCchhhH-HhHHHhhccccceEEEeccccCcchhh----hHHHHHHHHhhc
Q psy2649 76 GN-ALLVGVGGSGKQSL-SRLSAFISTLEPFQIQLKKNYGIPDLK----IDLASLYLKAGL 130 (1637)
Q Consensus 76 gh-~lLvG~~GsGr~sl-~rlaa~~~~~~~~~i~~~~~y~~~~f~----~dLk~~~~~ag~ 130 (1637)
-+ .|+||+.|+||||. +|||.|+...- +.+-+..+ +.|| |.|+..-.+.|+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g-~~VllaA~---DTFRAaAiEQL~~w~er~gv 195 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQG-KSVLLAAG---DTFRAAAIEQLEVWGERLGV 195 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCC-CeEEEEec---chHHHHHHHHHHHHHHHhCC
Confidence 44 45589999999876 99999976432 22222222 2455 445555555543
No 297
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.59 E-value=2.9 Score=47.01 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.4
Q ss_pred CCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+..|+|++||||+||.++-+-+..
T Consensus 25 ~g~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 25 PGMYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred CCcEEEECCCCCCHHHHHHHHhCCCC
Confidence 35999999999999999999887643
No 298
>PRK10869 recombination and repair protein; Provisional
Probab=69.45 E-value=69 Score=41.74 Aligned_cols=329 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhcccc---------ceEEEeccccCcchhhhHHHHHHHHhhcccccEEEE---
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLE---------PFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFL--- 138 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~---------~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l--- 138 (1637)
+..+.|--+++|..|+||+.+.-=-.++.|-. --...+...|+..+- ...+..+...|+.+...+.+
T Consensus 18 i~f~~glnvitGetGaGKS~ildAi~~llG~r~~~~~ir~g~~~a~Ve~~F~~~~~-~~~~~~l~~~~~~~~~~~~i~R~ 96 (553)
T PRK10869 18 IDFQSGMTVITGETGAGKSIAIDALGLCLGGRAEASMVRPGATRADLCARFSLKDT-PAALRWLEDNQLEDGNECLLRRV 96 (553)
T ss_pred EecCCCcEEEECCCCCChHHHHHHHHHHhCCCcccccccCCCCcEEEEEEEecCCC-hHHHHHHHhcCCCCCCeEEEEEE
Q ss_pred ----------ecccccccc---ceeeeehhhhccCCCCCCCCchHHHHHHHhhhcCCCccccCCCCcccccchhhHHHHh
Q psy2649 139 ----------MTDSQVADE---KFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPEIPLTADLDPLTMLTDDATIAFW 205 (1637)
Q Consensus 139 ----------~~d~~i~~~---~fle~in~lL~~gevp~Lf~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~f 205 (1637)
+++..+... .+.+++=.+-..++--.|++++..-.+++.+......
T Consensus 97 i~~~g~s~~~INg~~v~~~~l~~l~~~li~ihgQ~~~~~ll~~~~~~~lLD~~~~~~~~--------------------- 155 (553)
T PRK10869 97 ISSDGRSRGFINGTPVPLSQLRELGQLLIQIHGQHAHQLLLKPEHQKTLLDAYANETSL--------------------- 155 (553)
T ss_pred EecCCcceEEECCeeccHHHHHHHHHhhhheeCcChHHHhcCHHHHHHHHHHhcccHHH---------------------
Q ss_pred hccCCCccccccCcceeEecccccccccChhhhhhchHHHHHHHHhhhHhhhhHHHhhccccccCCCchhHHHHHHHHHH
Q psy2649 206 NNEGLPNDRMSTENATILVNSQRWPLMIDPQEVLRKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAK 285 (1637)
Q Consensus 206 ~~~vL~v~~~s~~~~~~~~~~~~~P~l~~p~~al~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~TP~~fl~~l~~f~~ 285 (1637)
..++...| ..|-+..+.+..
T Consensus 156 ------------------------------------------------~~~~~~~y------------~~~~~~~~~l~~ 175 (553)
T PRK10869 156 ------------------------------------------------LQEMRAAY------------QLWHQSCRDLAQ 175 (553)
T ss_pred ------------------------------------------------HHHHHHHH------------HHHHHHHHHHHH
Q ss_pred HHhhhhhhhhhhhhhhhhhHHHhhhc---------hhhhhhHHHhHHhhhhhhhhhHHhhhh-----hcchHHHHHHHhh
Q psy2649 286 LLKIKFDDNKSGITRFQNGLQKLVSL---------GNEEKKVRAIEEDVSYKQKVCAEDLEK-----AEPALVAAQEALD 351 (1637)
Q Consensus 286 l~~~k~~~l~~~~~~l~~gL~kL~e~---------~~ee~k~~~~~~e~~~~~~~~~~~L~~-----a~P~l~~A~~al~ 351 (1637)
+..+..+..++++.++-.++.|.++ -+++.+.-.-.+++.+.-..+...|.. +...|..|..++.
T Consensus 176 -l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~ 254 (553)
T PRK10869 176 -HQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLS 254 (553)
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q ss_pred hhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhhhccccCCcCcchhhhhhheeeeEEEEecchhH
Q psy2649 352 TLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVINIITFYNVWTFVEPKR 431 (1637)
Q Consensus 352 ~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k~~~i~~~a~~L~~WV~Ai~~Y~~v~~~v~P~~ 431 (1637)
.+..-| .++..+..-=..+..-++-++--+.. +..+-++.+.++..+ -.-|...-.-.-+|..-...|--.+
T Consensus 255 ~~~~~d-~~~~~~~~~l~~~~~~l~~~~~~l~~----~~~~~~~dp~~l~~i---e~Rl~~l~~L~rKyg~~~~~~~~~~ 326 (553)
T PRK10869 255 ELIGMD-SKLSGVLDMLEEALIQIQEASDELRH----YLDRLDLDPNRLAEL---EQRLSKQISLARKHHVSPEELPQHH 326 (553)
T ss_pred HHhhhC-HhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCHHHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhhh
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKE-KLFCQNQAEECAEKI 490 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e-~~~l~~~~~~~~~rl 490 (1637)
+++++--+.+....+.++++++++.++.+++.++.+++.+..++ ..+|+..+...=..|
T Consensus 327 ~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 327 QQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 299
>PRK09039 hypothetical protein; Validated
Probab=69.37 E-value=18 Score=43.81 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLAD 494 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 494 (1637)
.++|.+.+....++..++..+++++..++++++.++..++.+.++....+.+++..+.+|+.|-
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777777777777777777777777777777777777663
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=69.37 E-value=4.6 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=29.5
Q ss_pred hhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHh-hccc
Q psy2649 61 MSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAF-ISTL 101 (1637)
Q Consensus 61 i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~-~~~~ 101 (1637)
+..+.+..+-|...+--++|+|++|+||+||++..|. |-.+
T Consensus 89 v~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 89 VSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred HHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3444455566677778889999999999999765554 4444
No 301
>KOG0727|consensus
Probab=69.28 E-value=8.5 Score=42.96 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=41.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
-|+| +||-|++|+||+.|++-+|+-....+..+.-+. .| +.+=-.-+|.+++.| -+|.|..+++++
T Consensus 188 pprg-vllygppg~gktml~kava~~t~a~firvvgsefvqky-lgegprmvrdvfrla-kenapsiifide 256 (408)
T KOG0727|consen 188 PPRG-VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY-LGEGPRMVRDVFRLA-KENAPSIIFIDE 256 (408)
T ss_pred CCcc-eEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH-hccCcHHHHHHHHHH-hccCCcEEEeeh
Confidence 3555 788999999999999999998777776653220 01 001012367778777 355554444443
No 302
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=69.27 E-value=7.3 Score=40.50 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=56.5
Q ss_pred eecCCchhhHHhHHHhhccccceEEE----------eccccCcc-----hhhhHHHHHHHHhhcccccEEEEeccccccc
Q psy2649 82 GVGGSGKQSLSRLSAFISTLEPFQIQ----------LKKNYGIP-----DLKIDLASLYLKAGLKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 82 G~~GsGr~sl~rlaa~~~~~~~~~i~----------~~~~y~~~-----~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~ 146 (1637)
|++||||+|+..-.|.-.++++.+=+ ++++--++ -|-+-|...+...--+|+. +++.+.+ ++
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~-~vi~CSA-LK- 78 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKH-VVIACSA-LK- 78 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCc-eEEecHH-HH-
Confidence 99999999999998888888877532 44443333 3777788877776555664 4444432 33
Q ss_pred cceeeeehhhhc--cCCCCCCCCchHHHHHHHhhhc
Q psy2649 147 EKFLVIINDMLA--SGEVPDLFTDDEIENIVNNIAA 180 (1637)
Q Consensus 147 ~~fle~in~lL~--~gevp~Lf~~ee~~~i~~~~~~ 180 (1637)
.++-+ +|. ++++-=+|=.=.++.+.+.++.
T Consensus 79 r~YRD----~LR~~~~~~~Fv~L~g~~~~i~~Rm~~ 110 (161)
T COG3265 79 RSYRD----LLREANPGLRFVYLDGDFDLILERMKA 110 (161)
T ss_pred HHHHH----HHhccCCCeEEEEecCCHHHHHHHHHh
Confidence 22322 332 3445555555566666665543
No 303
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=69.26 E-value=3.6 Score=44.97 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=21.7
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
.++++|++||||+|+++.-|-- +.+.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEc
Confidence 3689999999999997655544 5566553
No 304
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=69.19 E-value=7.2 Score=47.16 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=71.4
Q ss_pred hhhhhhhhhhcC-CCCceEE-EeecCCchhhHHh-HHHhhcc-----------------------ccceEEEec---ccc
Q psy2649 62 SHICRINRIMEA-PRGNALL-VGVGGSGKQSLSR-LSAFIST-----------------------LEPFQIQLK---KNY 112 (1637)
Q Consensus 62 ~hi~ri~RvL~~-p~gh~lL-vG~~GsGr~sl~r-laa~~~~-----------------------~~~~~i~~~---~~y 112 (1637)
.+..++.+.+++ --+|++| .|+.|+||+++++ ||.++.- =+++.+... +..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 455667777776 4489985 6999999999965 4555531 134444333 346
Q ss_pred CcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCCC-----CCCchHHHHHHHhhhcCCC
Q psy2649 113 GIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPD-----LFTDDEIENIVNNIAAEPE 183 (1637)
Q Consensus 113 ~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp~-----Lf~~ee~~~i~~~~~~~~~ 183 (1637)
++++.|+-.+.+..+. .+|..-|+++++.+-..+ +--|+||-+=|=|. +...+..+.+...++..+.
T Consensus 89 ~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~---~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 89 GVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTD---AAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred CHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCH---HHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 6777776555555555 556666666676655443 45788887555443 3335555555555554443
No 305
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=69.13 E-value=2.9 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=25.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
++-=+-++|++||||+||-|+.|-+....-=++
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V 60 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 344456899999999999999998876544433
No 306
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.07 E-value=15 Score=44.82 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.4
Q ss_pred CceEEEeecCCchhhH-HhHHHhhcc
Q psy2649 76 GNALLVGVGGSGKQSL-SRLSAFIST 100 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl-~rlaa~~~~ 100 (1637)
+.++|+|++|+||+|+ ++||+.+.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 6789999999999998 788877753
No 307
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=69.06 E-value=3.6 Score=53.45 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=44.5
Q ss_pred hhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEec
Q psy2649 53 NLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLK 109 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~ 109 (1637)
.++=-..++..+.+-.+.+.....++||.|..||||++++|...+.. +..++.++..
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~ 256 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCA 256 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecC
Confidence 34555567777777777777889999999999999999999988764 3467766654
No 308
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.98 E-value=8.5 Score=46.98 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCCceEEEeecCCchhhH-HhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSL-SRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl-~rlaa~~~ 99 (1637)
.+|..+|+|++|+||||+ ++||+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367888999999999999 78888753
No 309
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=68.86 E-value=3.2 Score=46.71 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.|+-+-+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 666788999999999999999987753
No 310
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=68.65 E-value=4.5 Score=48.88 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=36.1
Q ss_pred hhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhcc---ccceEEEec
Q psy2649 59 DAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIST---LEPFQIQLK 109 (1637)
Q Consensus 59 ~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~---~~~~~i~~~ 109 (1637)
.++..+.+-.+-+..-..++||.|.+||||.+++|..-.... ..++.++..
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~ 59 (329)
T TIGR02974 6 NAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCA 59 (329)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCC
Confidence 344555555555556789999999999999999997655443 456666544
No 311
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=68.61 E-value=28 Score=46.03 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=56.8
Q ss_pred CcEEEEecccccccchhhhhhhhhhhcCcceeEecccccccCCCceeeeeecccCCCCCccccccceEEEEEe-cccchh
Q psy2649 613 GFVLLIENIGESVDPVLDNLIGRNLIRKGKVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTV-TRDGLE 691 (1637)
Q Consensus 613 G~~lli~dv~e~~dp~L~~ll~~~~~~~g~~I~ig~~~i~~~p~F~L~l~T~~~~~~~~p~~~~~~~vInftv-t~~~Le 691 (1637)
++.+||++++ .+++.-...|.|. .-+..++.+++|+|+.+ ..+++.+.+|+..++|.- +.+.+.
T Consensus 120 ~KVIIIDEah-~LT~~A~NALLKt-------------LEEPP~~v~FILaTtd~-~KIp~TIrSRCq~f~Fk~Ls~eeIv 184 (830)
T PRK07003 120 FKVYMIDEVH-MLTNHAFNAMLKT-------------LEEPPPHVKFILATTDP-QKIPVTVLSRCLQFNLKQMPAGHIV 184 (830)
T ss_pred ceEEEEeChh-hCCHHHHHHHHHH-------------HHhcCCCeEEEEEECCh-hhccchhhhheEEEecCCcCHHHHH
Confidence 4778899984 6665433333332 12356678889988865 468888999999999984 444443
Q ss_pred HHHHHHHhhhcCCCHHHHhhhhhcc
Q psy2649 692 DQLLAEVVKFERPDLELLKANLTKE 716 (1637)
Q Consensus 692 ~qlL~~vv~~e~PeLe~~~~~l~~~ 716 (1637)
+.|..+++.|+-+++++-..++..
T Consensus 185 -~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 185 -SHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred -HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444556666766666655544443
No 312
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.57 E-value=3.2 Score=46.58 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.++-+-+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 666778999999999999999887643
No 313
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=68.38 E-value=6.7 Score=44.50 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.0
Q ss_pred EEEeecCCchhhHHhHHHhhc
Q psy2649 79 LLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 79 lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
-+.|.+||||+|+++.-+...
T Consensus 3 gI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 478999999999987666554
No 314
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=68.37 E-value=8.2 Score=48.08 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=34.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEE--eccccCcc-hhhhHHHHHHHHhhcccccEEEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ--LKKNYGIP-DLKIDLASLYLKAGLKNAGIMFL 138 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~--~~~~y~~~-~f~~dLk~~~~~ag~~~~~~v~l 138 (1637)
+|..+.|+|++||||+|+.| +..+.-.+=..|. -+.-++.. .=.+.|+.+++.---.++|.++-
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr-~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~fn~~~~~lIva 97 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILA-ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGFNQSNKPLIVG 97 (504)
T ss_pred CCCEEEEECCCCCCHHHHHh-cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhhhcCCCCEEEE
Confidence 56677889999999999999 3222211111122 12223322 22355666666554445665544
No 315
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=68.24 E-value=3.3 Score=46.87 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+.+-+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566788999999999999999987754
No 316
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.21 E-value=1.3e+02 Score=39.35 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=20.1
Q ss_pred CchhHHHHHHHHHHHHhhhhh----hhhhhhhhhhhhHHH
Q psy2649 272 TPKSFLEQIDLYAKLLKIKFD----DNKSGITRFQNGLQK 307 (1637)
Q Consensus 272 TP~~fl~~l~~f~~l~~~k~~----~l~~~~~~l~~gL~k 307 (1637)
-|..+-++-..|+.|..+... .+..+++.++.-+..
T Consensus 228 ~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 228 LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDE 267 (569)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Confidence 466666666777777654442 344455555544444
No 317
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=68.20 E-value=7.4 Score=44.41 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=66.2
Q ss_pred hhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhccc
Q psy2649 53 NLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKN 132 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~ 132 (1637)
.||+..-.=....-|...|++-.|.+ ++|+.||||+.++|=-|.+.|..++..+-+...+.. .+.+++.-+..
T Consensus 11 rlv~Tplt~r~~~~l~~al~~~~~~~-~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~----~l~ril~G~~~-- 83 (231)
T PF12774_consen 11 RLVITPLTDRCFLTLTQALSLNLGGA-LSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQ----SLSRILKGLAQ-- 83 (231)
T ss_dssp -----HHHHHHHHHHHHHHCTTTEEE-EESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HH----HHHHHHHHHHH--
T ss_pred CceechHHHHHHHHHHHHhccCCCCC-CcCCCCCCchhHHHHHHHHhCCeEEEecccccccHH----HHHHHHHHHhh--
Confidence 44554444445556667777776665 799999999999999999999999988877665543 35555543322
Q ss_pred ccEEEEeccccccccceeeeehhhhccCCCCCCCCchHHHHHHHhhhcC
Q psy2649 133 AGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 133 ~~~v~l~~d~~i~~~~fle~in~lL~~gevp~Lf~~ee~~~i~~~~~~~ 181 (1637)
-..-..|++-+-.+.+-|-.|- +.+..|.+.++..
T Consensus 84 ~GaW~cfdefnrl~~~vLS~i~--------------~~i~~i~~al~~~ 118 (231)
T PF12774_consen 84 SGAWLCFDEFNRLSEEVLSVIS--------------QQIQSIQDALRAK 118 (231)
T ss_dssp HT-EEEEETCCCSSHHHHHHHH--------------HHHHHHHHHHHCT
T ss_pred cCchhhhhhhhhhhHHHHHHHH--------------HHHHHHHHhhccc
Confidence 2456677777766654444322 3455666766644
No 318
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=68.20 E-value=3.4 Score=45.16 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+....|+|++||||+||.|+.+-+.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367788899999999999999987764
No 319
>KOG1003|consensus
Probab=68.17 E-value=9.9 Score=40.94 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=73.5
Q ss_pred hheeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhh------
Q psy2649 416 NIITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEK------ 489 (1637)
Q Consensus 416 Ai~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r------ 489 (1637)
|--+|-.|.+++.=+...|+.++.....+......+...+..+...+..|...-+...+..+..+.++..+..|
T Consensus 79 adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 79 ADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 44466666666666777888888887777777777777777777777666666666655555555555555544
Q ss_pred -hhhhhHhhhcccccccchHHHHHHHhhcc
Q psy2649 490 -IDLADRLVNGLASENVRWKDSVLGLQQSA 518 (1637)
Q Consensus 490 -l~ra~~Li~~L~~E~~rW~~~~~~l~~~~ 518 (1637)
-+-|++=+..|..+..+|...+.....+.
T Consensus 159 rAE~aERsVakLeke~DdlE~kl~~~k~ky 188 (205)
T KOG1003|consen 159 RAEFAERRVAKLEKERDDLEEKLEEAKEKY 188 (205)
T ss_pred hHHHHHHHHHHHcccHHHHHHhhHHHHHHH
Confidence 45667889999999999998888777653
No 320
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=68.15 E-value=3.4 Score=46.50 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+.+..|+|++||||+||.|+-+-+..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3777889999999999999999987654
No 321
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=68.02 E-value=3.4 Score=45.82 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+....|+|.+|+||+||.|+-+-+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3677888999999999999999888753
No 322
>PRK09039 hypothetical protein; Validated
Probab=67.97 E-value=21 Score=43.39 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLAD 494 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 494 (1637)
|.+.++..++++|...+....+.+.++..++.+|+.|+.++.....+....+.+....+.+++...
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555544444444444444444444433
No 323
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=67.96 E-value=9.7 Score=42.51 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=39.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhh-----ccccce----------EE----E--eccccCcchhhhHHHHHHHHhhcccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFI-----STLEPF----------QI----Q--LKKNYGIPDLKIDLASLYLKAGLKNA 133 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~-----~~~~~~----------~i----~--~~~~y~~~~f~~dLk~~~~~ag~~~~ 133 (1637)
+.-.+|+|+.|+||+|+.|..+-. .|+-+. ++ . -+...+...|..+++.+-.-+..-..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 347889999999999999988721 232111 00 0 01112345677777764444433346
Q ss_pred cEEEEecc
Q psy2649 134 GIMFLMTD 141 (1637)
Q Consensus 134 ~~v~l~~d 141 (1637)
+-+++++|
T Consensus 109 ~~llllDE 116 (202)
T cd03243 109 RSLVLIDE 116 (202)
T ss_pred CeEEEEec
Confidence 66666665
No 324
>PLN02840 tRNA dimethylallyltransferase
Probab=67.90 E-value=7.7 Score=47.89 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=48.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE--------------------------------EeccccCcchhhhHHHHH
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI--------------------------------QLKKNYGIPDLKIDLASL 124 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i--------------------------------~~~~~y~~~~f~~dLk~~ 124 (1637)
-++++|+.||||++++.--|--.+.+++.. +++..|++.+|.+|-+++
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A~~~ 102 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDARRA 102 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHHHHH
Confidence 477889999999999654444433333221 133568899999999998
Q ss_pred HHHhhcccccEEEEeccccccccceeeeehhhhcc
Q psy2649 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLAS 159 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~ 159 (1637)
+...--.| ++.+++--+.+ |+++||..
T Consensus 103 I~~i~~rg-kiPIvVGGTGl-------Yl~aLl~G 129 (421)
T PLN02840 103 TQDILNRG-RVPIVAGGTGL-------YLRWYIYG 129 (421)
T ss_pred HHHHHhcC-CCEEEEcCccH-------HHHHHhcC
Confidence 88774444 44555444433 46677653
No 325
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.73 E-value=3.4 Score=46.81 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.|+-+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67788899999999999999988764
No 326
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.72 E-value=3.5 Score=45.91 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=23.7
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+.+..|+|++||||+||.++.+-+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478889999999999999999887664
No 327
>PRK04182 cytidylate kinase; Provisional
Probab=67.72 E-value=6.2 Score=42.82 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.5
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+.++|.+||||+|+++..|--.++.++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEe
Confidence 678999999999999999888787655
No 328
>PLN02674 adenylate kinase
Probab=67.54 E-value=5.3 Score=45.83 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
+.-+++|+|++||||.|+++.-|.-.++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h 59 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH 59 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 345799999999999999887777666443
No 329
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=67.54 E-value=4.1 Score=42.89 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=24.1
Q ss_pred EEEeecCCchhhHHhHHHhhccccceE
Q psy2649 79 LLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 79 lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.+.|++|||++|+++.-|-..|++++.
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhCCceee
Confidence 467999999999999999999998874
No 330
>KOG0745|consensus
Probab=67.43 E-value=9 Score=46.34 Aligned_cols=65 Identities=28% Similarity=0.342 Sum_probs=47.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEec----cccCcchhhhHHHHHHHHhhcc----cccEEEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK----KNYGIPDLKIDLASLYLKAGLK----NAGIMFL 138 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~ag~~----~~~~v~l 138 (1637)
..+|+||+|+.||||+-|+.--|-+.+-.+.-.+-| .+|==.|-..=|.+++..|+.+ .+.+|||
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVfl 297 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFL 297 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEE
Confidence 358999999999999999888888777666554433 4565567777788888888754 2346766
No 331
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=67.33 E-value=3.4 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.4
Q ss_pred CceEEEeecCCchhhHHhHHHhhc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
||+||.|..|+||++++|..+.+.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhC
Confidence 889999999999999999888876
No 332
>KOG0804|consensus
Probab=67.27 E-value=20 Score=43.49 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccc
Q psy2649 440 ELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSAL 519 (1637)
Q Consensus 440 ~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~ 519 (1637)
+++..++.++.+-++..+++.....++..-+...+..+++..+++.++.+++--+.+=..|-..+.-|...+.+++.+.+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444445555555555555555555555666667778888887777665
Q ss_pred cC
Q psy2649 520 TL 521 (1637)
Q Consensus 520 ~l 521 (1637)
..
T Consensus 428 ~~ 429 (493)
T KOG0804|consen 428 EA 429 (493)
T ss_pred HH
Confidence 43
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=67.26 E-value=3.6 Score=44.20 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+-+..|+|++|+||+||.|+-+-+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 677888999999999999999887643
No 334
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=67.25 E-value=3.3 Score=50.53 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=22.1
Q ss_pred hhhcCCCCceEEEeecCCchhhHHhHH
Q psy2649 69 RIMEAPRGNALLVGVGGSGKQSLSRLS 95 (1637)
Q Consensus 69 RvL~~p~gh~lLvG~~GsGr~sl~rla 95 (1637)
..+..|+|.++++|+.||||+|+.+.-
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL~aL 154 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLLAAI 154 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHHHHH
Confidence 345568999999999999999996543
No 335
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.25 E-value=43 Score=48.55 Aligned_cols=254 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhhhchHHHHHHHHhhhHhhhhHHHhhccccccCCCchhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHhhhc-hhhh
Q psy2649 237 EVLRKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSL-GNEE 315 (1637)
Q Consensus 237 ~al~~~~~~~~~~~h~~~~~~~~~~~~~~~r~~~~TP~~fl~~l~~f~~l~~~k~~~l~~~~~~l~~gL~kL~e~-~~ee 315 (1637)
+.++..+..--..+|......+..+....+ ++ |.. ..+.....-.......+..+....+.-+..+... ...+
T Consensus 538 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~---~~-~~~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~ 611 (1311)
T TIGR00606 538 EMLTKDKMDKDEQIRKIKSRHSDELTSLLG---YF-PNK--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN 611 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC-CCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHhHHhhhhhhhhhHH--hhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcC
Q psy2649 316 KKVRAIEEDVSYKQKVCAE--DLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDL 393 (1637)
Q Consensus 316 ~k~~~~~~e~~~~~~~~~~--~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~ 393 (1637)
+.+...+.++...++.+.. +.....-.|.+++..+....+ ++..++++..
T Consensus 612 ~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~-~~~~~~~~~~--------------------------- 663 (1311)
T TIGR00606 612 NELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSK-QRAMLAGATA--------------------------- 663 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------------------------
Q ss_pred ccchhhhcc--ccCCcCcchhhhhhheeee-----EEEEecchhHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy2649 394 GWKGSQLKA--LKAPPQGLCAWVINIITFY-----NVWTFVEPKRKALAAANAELAAASQKLAELK-------------- 452 (1637)
Q Consensus 394 ~W~~~k~~~--i~~~a~~L~~WV~Ai~~Y~-----~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~-------------- 452 (1637)
.|....-.. -.++||+||.=-...-... +.-..+...-...+.++..+...++.++.++
T Consensus 664 ~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~ 743 (1311)
T TIGR00606 664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743 (1311)
T ss_pred HHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcc------cccccchHHHHHHHhhccccCCcc
Q psy2649 453 AKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGL------ASENVRWKDSVLGLQQSALTLPGD 524 (1637)
Q Consensus 453 ~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L------~~E~~rW~~~~~~l~~~~~~l~gd 524 (1637)
.++..+++++.++..++.+...+.++++..+......++.++.|...+ ..|..+.+.++..+..+.....++
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~ 821 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
No 336
>KOG0744|consensus
Probab=67.21 E-value=5.4 Score=46.39 Aligned_cols=20 Identities=45% Similarity=0.524 Sum_probs=16.3
Q ss_pred ceEEEeecCCchhhHHhHHH
Q psy2649 77 NALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa 96 (1637)
=+||-|++|+||+||+|=-|
T Consensus 179 liLlhGPPGTGKTSLCKaLa 198 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALA 198 (423)
T ss_pred EEEEeCCCCCChhHHHHHHH
Confidence 45788999999999987444
No 337
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.05 E-value=25 Score=44.37 Aligned_cols=74 Identities=18% Similarity=0.255 Sum_probs=42.4
Q ss_pred EecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 425 TFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAV---KEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 425 ~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~---~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
+.+.+.+..++.++.+....+..+.+++.++.+++.++++++.+..... .|...++.++...+.+|+...+-++
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666677777777777777777766666555432 2333444444444444444433333
No 338
>PRK02496 adk adenylate kinase; Provisional
Probab=67.03 E-value=4 Score=44.76 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++++|++||||+|+++..|-..++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3688999999999999988766665544
No 339
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.90 E-value=12 Score=46.78 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=24.5
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc----cccceEE
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS----TLEPFQI 106 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~----~~~~~~i 106 (1637)
++.++++|++|+||||+ ++||++.. +.++.-+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li 257 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI 257 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 56788999999999976 78998875 3455544
No 340
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.85 E-value=2.9 Score=43.44 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=59.9
Q ss_pred cEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCchh---------------HHHHhHHHhhhccCCEEEEehhh
Q psy2649 1050 PIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQE---------------VIAEETIQIASTKGHWAILQNVH 1114 (1637)
Q Consensus 1050 Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~---------------~~a~~~l~~a~~~G~WvlL~N~H 1114 (1637)
|++++-+||.==|..+..+|+..+ .++..+++.++.. ......+-+|+++|.|++|.+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 577777777766777777777764 3455555554321 12233455688899999999999
Q ss_pred hHHh-hhhcHHHHHHhhh---------cCC------CCceeEEEecCCCCCCCccccccccc
Q psy2649 1115 LVKN-WLPTLDKKMEASF---------EKP------HKNYRLFISAEPASDPEYHIIPQGVL 1160 (1637)
Q Consensus 1115 L~~~-wl~~Le~~l~~~~---------~~~------h~~FRLwLts~~~~~~~~~~fP~~lL 1160 (1637)
.+.+ .+..|...++... ... |++||++.|+.+.. .....++..++
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~ 136 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALL 136 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHH
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHH
Confidence 8665 4445655554310 011 23699999987765 11223555444
No 341
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=66.82 E-value=3.6 Score=46.45 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+-+-+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 566788999999999999999887653
No 342
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=66.76 E-value=3.4 Score=46.81 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.++-+-+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 777899999999999999999876643
No 343
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.71 E-value=23 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.0
Q ss_pred CCCceEEEeecCCchhhHH-hHHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLS-RLSAF 97 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~-rlaa~ 97 (1637)
+++.+.|||+.|+||+|+. +||+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999995 57774
No 344
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.61 E-value=3.6 Score=46.57 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+-+-+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566788999999999999999887653
No 345
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=66.61 E-value=3.7 Score=45.92 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+.+-+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 677888999999999999999887643
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=66.44 E-value=8.5 Score=46.20 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.3
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhcc
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIST 100 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~~ 100 (1637)
+.-.+++|++|+||+|+ .+||+++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 44566799999999988 677777653
No 347
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=66.25 E-value=8.3 Score=43.00 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=19.5
Q ss_pred CCC-c-eEEEeecCCchhhHHhHHH
Q psy2649 74 PRG-N-ALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 74 p~g-h-~lLvG~~GsGr~sl~rlaa 96 (1637)
..| . ++|.|+.|+||+|+.|..+
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 345 4 8999999999999999866
No 348
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=66.23 E-value=3.9 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.|+-+-+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67788999999999999999987664
No 349
>PRK14528 adenylate kinase; Provisional
Probab=66.23 E-value=4.3 Score=44.72 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=23.7
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
++++.|++||||+|+++..|.-.++..+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 47899999999999999887766766553
No 350
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.22 E-value=17 Score=52.36 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=27.5
Q ss_pred chhhhhhheeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 410 LCAWVINIITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDK 468 (1637)
Q Consensus 410 L~~WV~Ai~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~ 468 (1637)
|-.|..+.-+|........-.+++++.++..+..+++++...+.++.....+++.+.+.
T Consensus 860 l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~ 918 (1353)
T TIGR02680 860 LHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEES 918 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454444444444444444444444444444444444444444444444444444443
No 351
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=66.17 E-value=4.6 Score=42.74 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
-.+++|++|+||+|++++|.-..
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred EEEEEcCCCCChHHHHHHHHHHH
Confidence 35789999999999999999988
No 352
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=66.14 E-value=9.6 Score=42.48 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.2
Q ss_pred ceEEEeecCCchhhHHhHHHh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~ 97 (1637)
-.+|+|++|+||+|+.|..+-
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 567899999999999988773
No 353
>PRK04406 hypothetical protein; Provisional
Probab=66.11 E-value=32 Score=31.80 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh
Q psy2649 441 LAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLA 493 (1637)
Q Consensus 441 l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 493 (1637)
....++++..++.++.-.+..|++|.+...+..++...|+.++.....|+..+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456677777777777777777777777777777888888888777777554
No 354
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.08 E-value=25 Score=41.96 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
.++.++.+++.....++..++.++.++++++++++...++...++.+++.+++.++..++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666666666666666666666666655555443
No 355
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=66.07 E-value=3.8 Score=45.23 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+||.|+-+-+..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667888999999999999999887653
No 356
>KOG0737|consensus
Probab=66.06 E-value=7.4 Score=46.35 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHH---HHHHHHhhcccccEEEEec
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDL---ASLYLKAGLKNAGIMFLMT 140 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dL---k~~~~~ag~~~~~~v~l~~ 140 (1637)
|.-.+||-|++|+||+-|++-.|-=+|+.+..+.++.--+ .-|-|.. |.++.-| -+=+|+.+.++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~-KWfgE~eKlv~AvFslA-sKl~P~iIFID 193 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS-KWFGEAQKLVKAVFSLA-SKLQPSIIFID 193 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-hhHHHHHHHHHHHHhhh-hhcCcceeehh
Confidence 7778999999999999999999999999999987763222 3343443 3444444 35555555443
No 357
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=66.03 E-value=3.8 Score=45.79 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++.+..|+|++|+||+||.|+.+-+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 566888999999999999999987653
No 358
>KOG0989|consensus
Probab=65.96 E-value=4.6 Score=46.83 Aligned_cols=29 Identities=24% Similarity=0.107 Sum_probs=24.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
.-.-|+|+-|++||||+|+++.+|.-..+
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 35579999999999999999988876655
No 359
>KOG0064|consensus
Probab=65.73 E-value=3.6 Score=50.72 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhh
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.||-|+|+.|+.||||+||-|.-+-+
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggL 531 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGL 531 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999987654
No 360
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=65.72 E-value=4.4 Score=48.33 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=21.6
Q ss_pred hhhcCCCCceEEEeecCCchhhH-HhHHHhh
Q psy2649 69 RIMEAPRGNALLVGVGGSGKQSL-SRLSAFI 98 (1637)
Q Consensus 69 RvL~~p~gh~lLvG~~GsGr~sl-~rlaa~~ 98 (1637)
++++.+.|++++.|..|||||++ +.-++++
T Consensus 7 ~~i~~~~~~~lV~a~AGSGKT~~l~~ri~~l 37 (315)
T PF00580_consen 7 RIIRSTEGPLLVNAGAGSGKTTTLLERIAYL 37 (315)
T ss_dssp HHHHS-SSEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEEeCCCCCchHHHHHHHHHh
Confidence 56666899999999999999995 4444443
No 361
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=65.68 E-value=3.9 Score=46.15 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+-+-+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667788999999999999999887754
No 362
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=65.59 E-value=4 Score=44.55 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++|+||+||.|+.+-+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 55677799999999999999987764
No 363
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=65.49 E-value=4 Score=47.00 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
||.+..|+|++||||+||.|+-+-+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5668889999999999999997765
No 364
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=65.43 E-value=4 Score=46.00 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+.+..|+|++||||+||.|+.+-+..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3788999999999999999999987753
No 365
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.43 E-value=4 Score=46.69 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.++-+-+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667888999999999999999887753
No 366
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.42 E-value=4 Score=46.80 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
||....|+|++||||+||.|+-+-+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 666888999999999999999987654
No 367
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=65.40 E-value=11 Score=41.64 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccccCCcceeeehhhhhhh
Q psy2649 456 ASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYV 535 (1637)
Q Consensus 456 ~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~l~gd~lL~aa~i~Y~ 535 (1637)
.++++++++|+++..++.-...-|+.++.-+-.|+.-=+.||..|-.|..|-.-....+......++.|+.|+--.-||+
T Consensus 54 ~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~RHg~~~~lLse~a~~mv~DvALaEYaAtFL 133 (277)
T PF15030_consen 54 DELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELHRHGPANHLLSELAQSMVNDVALAEYAATFL 133 (277)
T ss_pred HHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666665555544455666666666666666888888888888887777778888889999998887777776
Q ss_pred cch
Q psy2649 536 GCF 538 (1637)
Q Consensus 536 G~~ 538 (1637)
.|=
T Consensus 134 ~pg 136 (277)
T PF15030_consen 134 APG 136 (277)
T ss_pred CCC
Confidence 553
No 368
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=65.38 E-value=9.1 Score=42.48 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCCc-eEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhh
Q psy2649 74 PRGN-ALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 74 p~gh-~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag 129 (1637)
..|. +.++|++||||+|+.|--..+-..+-=+|.+...--... .|+..+=++.|
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~--~~~~~~R~~vG 80 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK--KDILKLRRKVG 80 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch--hhHHHHHHhcC
Confidence 3455 456899999999999988777666655665543211111 15665555555
No 369
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.37 E-value=9.3 Score=46.42 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=24.1
Q ss_pred CCCceEEEeecCCchhhH-HhHHHhhc--cccceEE
Q psy2649 74 PRGNALLVGVGGSGKQSL-SRLSAFIS--TLEPFQI 106 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~~i 106 (1637)
++.-++++|++|+||+|+ ++||++.. +..+.-+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 455667899999999987 88888764 3444444
No 370
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=65.28 E-value=4.1 Score=46.10 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+....|+|++||||+||.|+-+-+..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3677888999999999999999887754
No 371
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=65.22 E-value=4 Score=47.45 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+-+-+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66788899999999999999988664
No 372
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=65.04 E-value=15 Score=38.69 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=16.6
Q ss_pred ceEEEeecCCchhhHHhHHHh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~ 97 (1637)
|.++.|.+|+||+++++--+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH
Confidence 578999999999998654433
No 373
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=64.85 E-value=4.1 Score=46.68 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.|+-+-+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 67788899999999999999988664
No 374
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=64.81 E-value=4.3 Score=45.53 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=23.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+.+..|+|++|+||+||.++.+-+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3667788999999999999999887643
No 375
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=64.77 E-value=4.1 Score=46.82 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.++.+-+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 778999999999999999999887643
No 376
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=64.75 E-value=4.3 Score=45.88 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|.+||||+||.|+-+-+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 567888999999999999999987653
No 377
>KOG0018|consensus
Probab=64.74 E-value=77 Score=42.85 Aligned_cols=242 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHhhhHhhhhHHHhhccccccCCCchhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHhhhchhhhhhHHHhHHh
Q psy2649 245 VFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLGNEEKKVRAIEED 324 (1637)
Q Consensus 245 ~~~~~~h~~~~~~~~~~~~~~~r~~~~TP~~fl~~l~~f~~l~~~k~~~l~~~~~~l~~gL~kL~e~~~ee~k~~~~~~e 324 (1637)
..|-.+..-++++-++.+....+..+++-+.|-+-=. ..-..+|+.+++.++.++...|+-..+ .....+++..++.
T Consensus 739 ~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~--~~~~a~k~~ef~~q~~~l~~~l~fe~~-~d~~~~ve~~~~~ 815 (1141)
T KOG0018|consen 739 GEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL--QQEFAKKRLEFENQKAKLENQLDFEKQ-KDTQRRVERWERS 815 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhheec-ccHHHHHHHHHHH
Q ss_pred hhhhhhhhHHhhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhh-----
Q psy2649 325 VSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQ----- 399 (1637)
Q Consensus 325 ~~~~~~~~~~~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k----- 399 (1637)
++..+.+.+.-.. .-+++...+..+ +.+.. |. --.+.. ....|...+
T Consensus 816 v~~~~~~~~~~~~----~e~~~~k~i~e~--~~~e~-k~---------------k~~~~~------~~~e~~e~~k~~~~ 867 (1141)
T KOG0018|consen 816 VEDLEKEIEGLKK----DEEAAEKIIAEI--EELEK-KN---------------KSKFEK------KEDEINEVKKILRR 867 (1141)
T ss_pred HHHHHHhHHhhHH----HHHHHHHHHhhH--HHHHH-HH---------------HHHHHH------HHHHHHHHHHHHHH
Q ss_pred ----------------------------------hccccCCcC--cchhhhhhh-eeeeEEEEecchhHHHHHHHHHHHH
Q psy2649 400 ----------------------------------LKALKAPPQ--GLCAWVINI-ITFYNVWTFVEPKRKALAAANAELA 442 (1637)
Q Consensus 400 ----------------------------------~~~i~~~a~--~L~~WV~Ai-~~Y~~v~~~v~P~~~~l~~~e~~l~ 442 (1637)
+..|.-|+. +|..=+..+ +.|...-++.+ +++++++.++.++
T Consensus 868 ~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~l~ 946 (1141)
T KOG0018|consen 868 LVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSVLN 946 (1141)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHH-HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccccCC
Q psy2649 443 AASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLP 522 (1637)
Q Consensus 443 ~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~l~ 522 (1637)
.. +-.....+.+.+++ .++..++|+.+.++..+..++.+.++.+ |+..+...... -...++.+=.++.+.-
T Consensus 947 ~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~--R~~~F~~~F~~----va~~Id~IYK~Ltnt~ 1017 (1141)
T KOG0018|consen 947 RI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKK--RYERFMACFEH----VADNIDRIYKELTNTE 1017 (1141)
T ss_pred Hh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHHhcccc
Q ss_pred cceee
Q psy2649 523 GDILL 527 (1637)
Q Consensus 523 gd~lL 527 (1637)
|.+.|
T Consensus 1018 g~AyL 1022 (1141)
T KOG0018|consen 1018 GQAYL 1022 (1141)
T ss_pred cceee
No 378
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=64.68 E-value=4.3 Score=45.72 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+-+-+.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56677899999999999999977664
No 379
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=64.61 E-value=4.3 Score=46.28 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.++.+..|+|++|+||+||.++-+-+..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3778899999999999999999987754
No 380
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.57 E-value=4.3 Score=45.66 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++....|+|++||||+||.|+-+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55677799999999999999887654
No 381
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=64.56 E-value=4.2 Score=47.49 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+.+..|+|++||||+||.++.+-+.
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 377888999999999999999998764
No 382
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.51 E-value=4.2 Score=45.05 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhh
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.|+.+..|+|++||||+||.|+-+-+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36667889999999999999998754
No 383
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=64.48 E-value=4.6 Score=43.60 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+....++|++||||+||.|+.+-+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3677889999999999999999877643
No 384
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=64.38 E-value=5 Score=42.43 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=18.6
Q ss_pred EEeecCCchhhHHhHHHhhcccc
Q psy2649 80 LVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 80 LvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++|++||||+|+++.-|---++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~ 23 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV 23 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE
T ss_pred CcCCCCCChHHHHHHHHHhcCcc
Confidence 68999999999988777665544
No 385
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=64.12 E-value=4.4 Score=46.12 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.|+-+-+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 66778899999999999999988764
No 386
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=64.08 E-value=4.5 Score=44.14 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..++|++|+||+||.|+-+-+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 667888999999999999999877643
No 387
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=64.07 E-value=4.4 Score=44.42 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|.+|+||+||.|+.+-+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667889999999999999999887754
No 388
>KOG0729|consensus
Probab=64.03 E-value=9.7 Score=42.85 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=49.5
Q ss_pred hhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEec---cccCcchhhhHHHHHHHHhhcccccEEEEe
Q psy2649 63 HICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK---KNYGIPDLKIDLASLYLKAGLKNAGIMFLM 139 (1637)
Q Consensus 63 hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~---~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~ 139 (1637)
|=-|..+.=--|---+||.|++|+||+-|+|-+|.=.+..+..+--+ ..|- .+=-.-+|+++..| ..|+.|++|
T Consensus 199 ~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyv-gegarmvrelf~ma--rtkkaciif 275 (435)
T KOG0729|consen 199 HPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV-GEGARMVRELFEMA--RTKKACIIF 275 (435)
T ss_pred CHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHh-hhhHHHHHHHHHHh--cccceEEEE
Confidence 44454444334666688999999999999999998888777655211 1221 11123477888888 557777665
Q ss_pred cc
Q psy2649 140 TD 141 (1637)
Q Consensus 140 ~d 141 (1637)
-|
T Consensus 276 fd 277 (435)
T KOG0729|consen 276 FD 277 (435)
T ss_pred ee
Confidence 44
No 389
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=63.98 E-value=4.3 Score=46.16 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
+|.+..|+|++|+||+||.++-+-+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566899999999999999999886643
No 390
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=63.98 E-value=4.7 Score=45.43 Aligned_cols=36 Identities=33% Similarity=0.335 Sum_probs=28.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEec
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK 109 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~ 109 (1637)
+|.-.=|+|.+||||+||+|+-+-+..-..=+|.+.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~ 67 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 566677999999999999999998887665555444
No 391
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=63.91 E-value=4.5 Score=46.58 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.7
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+....|+|++||||+||.|+-+-+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356688899999999999999987654
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=63.82 E-value=4.3 Score=41.18 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.8
Q ss_pred eEEEeecCCchhhHHhHHHhhc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++|.|.+||||+|+++--+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999987666553
No 393
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=63.80 E-value=4.3 Score=45.66 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+.+-+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 56678899999999999999977654
No 394
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=63.80 E-value=5.4 Score=44.88 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=22.3
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
++++|++||||+|+++..|--.|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6889999999999988877655655543
No 395
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.80 E-value=49 Score=36.23 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 460 ATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 460 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
+++++++++-++...+.++++.+++..+.|++
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 396
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=63.79 E-value=16 Score=43.06 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 29 PDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 29 ~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
-+.+++++.+.+.|.++.-....-++ .-+.++.+ -+.|- -+++.|.+||||+|+++.-|.-.++.
T Consensus 55 i~~~el~~~V~~~L~~~~~~~~~~~y-------~~~~~i~~-~~~p~-iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 55 ITKEELRRRVYYKLIEKDYEEVAEKY-------LLWRRIRK-SKEPI-IILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred eeHHHHHHHHHHHHHHhCcHhHHHHH-------HHHHHHhc-CCCCE-EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35688888888888886543321111 11112211 11232 36778999999999966555554655
No 397
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.79 E-value=4.5 Score=46.52 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
||....|+|++||||+||.++-+-+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 56688899999999999999888664
No 398
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=63.74 E-value=4.4 Score=46.34 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.|+-+-+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 666888999999999999999887643
No 399
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.73 E-value=4.6 Score=43.83 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+....++|++||||+||.|+-+-+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3566788999999999999999877643
No 400
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=63.66 E-value=5.1 Score=44.58 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.5
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
..+.|-..|+|++|+||+||.+.-+++.+
T Consensus 19 ~~~~g~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 19 PFPPGLTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456888999999999999999998874
No 401
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=63.65 E-value=4.6 Score=44.79 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+.+..|+|++||||+||.++-+-+.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 377889999999999999999988775
No 402
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=63.61 E-value=9.1 Score=51.35 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEec
Q psy2649 54 LVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLK 109 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~ 109 (1637)
++=...++..+.+-.+.+.....++|+.|.+||||+.++|...+.. +..++.++-.
T Consensus 378 liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~ 436 (686)
T PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 436 (686)
T ss_pred eeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecc
Confidence 4444566777766666666778899999999999999999876643 4466666543
No 403
>KOG0740|consensus
Probab=63.51 E-value=7.1 Score=47.98 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhh--hhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhc
Q psy2649 55 VLFEDAMSHICR--INRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGL 130 (1637)
Q Consensus 55 vlf~~~i~hi~r--i~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~ 130 (1637)
.++..++--..| +-.-|+.|-+.+||.|++|+||+-|+|-.|-=++..+|.|..+.-++ +.+=.--++.++.-| =
T Consensus 164 ~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vA-r 242 (428)
T KOG0740|consen 164 SLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVA-R 242 (428)
T ss_pred HhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHH-H
Confidence 344555555554 34557789999999999999999999999999999999997554322 111133355555555 3
Q ss_pred ccccEEEE
Q psy2649 131 KNAGIMFL 138 (1637)
Q Consensus 131 ~~~~~v~l 138 (1637)
..+|.|.+
T Consensus 243 ~~qPsvif 250 (428)
T KOG0740|consen 243 SLQPSVIF 250 (428)
T ss_pred hcCCeEEE
Confidence 44554444
No 404
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=63.48 E-value=4.5 Score=47.12 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.++.+-+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 67788899999999999999988764
No 405
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=63.47 E-value=4.8 Score=45.61 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.+..|+|++|+||+||.|+.+-+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 66788899999999999999988764
No 406
>PRK05541 adenylylsulfate kinase; Provisional
Probab=63.45 E-value=5 Score=43.67 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
++-.++++|.+||||+|+++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445778899999999999886543
No 407
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=63.44 E-value=8.3 Score=47.22 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=27.4
Q ss_pred hcCCCCceEEEeecCCchhhHH-hHHHhhc----cccceEEE
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLS-RLSAFIS----TLEPFQIQ 107 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~-rlaa~~~----~~~~~~i~ 107 (1637)
+..++|..+++|+.||||+|+. -|+.+++ +..++.++
T Consensus 145 l~~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 145 LLPAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 3457899999999999999985 5667774 23456554
No 408
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=63.41 E-value=4.7 Score=45.32 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++|+||+||.|+-+-+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 566778999999999999998886643
No 409
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=63.25 E-value=11 Score=46.32 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=18.7
Q ss_pred Cc-eEEEeecCCchhhHH-hHHHhhc
Q psy2649 76 GN-ALLVGVGGSGKQSLS-RLSAFIS 99 (1637)
Q Consensus 76 gh-~lLvG~~GsGr~sl~-rlaa~~~ 99 (1637)
.| .|+.|+.|+||++++ +||.++.
T Consensus 41 ~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 41 HHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh
Confidence 78 456899999999996 5666663
No 410
>PRK14526 adenylate kinase; Provisional
Probab=63.22 E-value=5.4 Score=44.86 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=22.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+++|+|++||||+|+++..|-..++..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 5789999999999998887755555443
No 411
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=63.21 E-value=4.5 Score=46.02 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.|+-+-+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 77788999999999999999988664
No 412
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=63.20 E-value=4.7 Score=44.85 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++|+||+||.++.+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67788899999999999999977764
No 413
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=63.16 E-value=62 Score=37.80 Aligned_cols=90 Identities=21% Similarity=0.157 Sum_probs=47.0
Q ss_pred cCcchhhhhhhe-eeeEEEEec-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2649 407 PQGLCAWVINII-TFYNVWTFV-EPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAE 484 (1637)
Q Consensus 407 a~~L~~WV~Ai~-~Y~~v~~~v-~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~ 484 (1637)
|..|...|.+.+ +-..-.+.. .+.+..|.+...++..++.-+.+......+.+.-...-+..+.+....++.++....
T Consensus 158 A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~ 237 (264)
T PF06008_consen 158 AEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQN 237 (264)
T ss_pred HHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777654 222222333 445666666666666666666666555555555444444444444444444444444
Q ss_pred hhhhhhhhhhHh
Q psy2649 485 ECAEKIDLADRL 496 (1637)
Q Consensus 485 ~~~~rl~ra~~L 496 (1637)
.+...|.-|+.+
T Consensus 238 ~~~~~L~~a~~~ 249 (264)
T PF06008_consen 238 EVSETLKEAEDL 249 (264)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 414
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.16 E-value=4.6 Score=46.75 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.++.+..|+|++||||+||.++-+-+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 367888999999999999999998654
No 415
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=63.13 E-value=4.7 Score=46.04 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.|+-+-+..
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 667888999999999999999987754
No 416
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=63.11 E-value=4.7 Score=46.01 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+-+-+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667788999999999999999987653
No 417
>KOG0741|consensus
Probab=63.06 E-value=15 Score=45.44 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=67.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEE---eccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccce
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ---LKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKF 149 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~---~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~f 149 (1637)
.|--.+||-|++||||++|+-=.|-..++.++.|- -.-+|+...=-..+|+++..| -+..--|++++|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA-YkS~lsiivvDd-------- 606 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA-YKSPLSIIVVDD-------- 606 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh-hcCcceEEEEcc--------
Confidence 45678999999999999999999999999888762 223455555556788888888 455555665544
Q ss_pred eeeehhhhccCCCCCCCCchHHHHHHHhhhcC
Q psy2649 150 LVIINDMLASGEVPDLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 150 le~in~lL~~gevp~Lf~~ee~~~i~~~~~~~ 181 (1637)
|--|+--.-|-.=|+.-=++.++--++..
T Consensus 607 ---iErLiD~vpIGPRfSN~vlQaL~VllK~~ 635 (744)
T KOG0741|consen 607 ---IERLLDYVPIGPRFSNLVLQALLVLLKKQ 635 (744)
T ss_pred ---hhhhhcccccCchhhHHHHHHHHHHhccC
Confidence 22344444566667766666666666544
No 418
>KOG1970|consensus
Probab=63.03 E-value=6.6 Score=48.90 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=26.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
=+||.|++|+||+|..++-|-+.|+++.+=
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 455579999999999999999999998874
No 419
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.95 E-value=5.1 Score=43.42 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++|+||+||.|+.+-+..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 667788899999999999999988753
No 420
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=62.91 E-value=4.8 Score=41.94 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=18.2
Q ss_pred eEEEeecCCchhhHHhHHHhhc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.+|+|++||||+|+++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999988776653
No 421
>PRK00279 adk adenylate kinase; Reviewed
Probab=62.90 E-value=5.3 Score=45.12 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.++++|++||||+|+++..|--.++..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 47889999999999999777666766554
No 422
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=62.88 E-value=8.7 Score=42.15 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=30.9
Q ss_pred EeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHH
Q psy2649 81 VGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYL 126 (1637)
Q Consensus 81 vG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~ 126 (1637)
=|..||||+|+++..+--....-+.+..+..-+-..+.+-+++++.
T Consensus 2 EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 2 EGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHh
Confidence 4999999999977666555554444444444444567777777776
No 423
>KOG0250|consensus
Probab=62.77 E-value=36 Score=46.04 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=28.4
Q ss_pred EEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 79 LLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 79 lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
.++|..||||+.+ |+|-..|.-----...|+ .-||. |.+-|...-.|.+-++-
T Consensus 66 fI~G~NGSGKSAI--ltAl~lglG~rAs~tnRg-------sslK~-lIK~G~~~A~IsItL~N 118 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAI--LTALTLGLGGRASATNRG-------SSLKD-LIKDGCSSAKISITLSN 118 (1074)
T ss_pred EeecCCCCcHHHH--HHHHHHhhccccccccch-------hhHHH-HHhCCCcceEEEEEEec
Confidence 6889999999976 334333321111122233 23555 33556666666655443
No 424
>PRK06835 DNA replication protein DnaC; Validated
Probab=62.73 E-value=14 Score=44.67 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=30.5
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHh-hc--cccceEEEeccccCcchhhhHHHHH
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAF-IS--TLEPFQIQLKKNYGIPDLKIDLASL 124 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~-~~--~~~~~~i~~~~~y~~~~f~~dLk~~ 124 (1637)
...+.+++|.|.+|+|||.|+.-.|. +. |+.+.-+. ..+|.+.|+..
T Consensus 180 ~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t------~~~l~~~l~~~ 229 (329)
T PRK06835 180 DKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT------ADELIEILREI 229 (329)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE------HHHHHHHHHHH
Confidence 34568899999999999999765554 32 44444332 23566666553
No 425
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=62.73 E-value=4.6 Score=46.25 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.++-+-+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 56677899999999999999988764
No 426
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=62.71 E-value=5 Score=42.16 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..++|.+|+||+|+.++-+-+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 566778999999999999999877643
No 427
>PRK08939 primosomal protein DnaI; Reviewed
Probab=62.70 E-value=13 Score=44.50 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHHHHHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dLk~~~ 125 (1637)
+.+++|.|..|+|||.|+.-.|+-. |+.+.-+. ..+|-.+||..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~------~~~l~~~lk~~~ 203 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH------FPEFIRELKNSI 203 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE------HHHHHHHHHHHH
Confidence 4568899999999999966554433 44444332 346777887765
No 428
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.67 E-value=4.8 Score=46.28 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+-+-+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667788999999999999999887643
No 429
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=62.64 E-value=4.9 Score=46.25 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.||....|+|++|+||+||.|+-+-+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477888899999999999999988764
No 430
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=62.62 E-value=5 Score=45.25 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++....|+|++||||+||.|+.+-+.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34556689999999999999988763
No 431
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=62.48 E-value=11 Score=41.03 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=20.9
Q ss_pred CCCCc-eEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGN-ALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh-~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|.|. ..|+|++|+||+|+.||-.-+.
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34444 5578999999999999987643
No 432
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=62.46 E-value=3.5 Score=49.23 Aligned_cols=12 Identities=33% Similarity=0.266 Sum_probs=5.6
Q ss_pred cccCCCCchhhh
Q psy2649 1165 KITNEPPTGMQA 1176 (1637)
Q Consensus 1165 kv~~E~p~glk~ 1176 (1637)
.+++||.+.-++
T Consensus 227 ~~~~eP~~n~~~ 238 (484)
T PF07088_consen 227 RGTWEPIPNTKA 238 (484)
T ss_pred cceeecCCCCcc
Confidence 345555554333
No 433
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.40 E-value=4.8 Score=46.67 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+.+..|+|++||||+||.++-+-+.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 3677888999999999999999987643
No 434
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=62.35 E-value=4.6 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+.+-+.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 67788899999999999999987654
No 435
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=62.26 E-value=4.8 Score=50.06 Aligned_cols=29 Identities=34% Similarity=0.650 Sum_probs=25.9
Q ss_pred hhhhhhhhcCCCCceEEEeecCCchhhHH
Q psy2649 64 ICRINRIMEAPRGNALLVGVGGSGKQSLS 92 (1637)
Q Consensus 64 i~ri~RvL~~p~gh~lLvG~~GsGr~sl~ 92 (1637)
..++.|.+.+|+|=.|..|+.||||+|+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTL 275 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTL 275 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 45778899999999999999999999873
No 436
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=62.08 E-value=11 Score=45.22 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=64.8
Q ss_pred hhhhhhhhhhcCCC-CceEE-EeecCCchhhHHhHHHhhccc------------------------cceEEEe--ccccC
Q psy2649 62 SHICRINRIMEAPR-GNALL-VGVGGSGKQSLSRLSAFISTL------------------------EPFQIQL--KKNYG 113 (1637)
Q Consensus 62 ~hi~ri~RvL~~p~-gh~lL-vG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~--~~~y~ 113 (1637)
....++.+.+.+.+ .|++| .|+.|+||+++++--|-..-| +++.+.. ++..+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence 34456677777655 78885 799999999997655443333 2333432 34456
Q ss_pred cchhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC-----CCCCchHHHHHHHhhh
Q psy2649 114 IPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP-----DLFTDDEIENIVNNIA 179 (1637)
Q Consensus 114 ~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp-----~Lf~~ee~~~i~~~~~ 179 (1637)
+.+.|+-.+.+. ....+|+.-|+++++.+-..+ +--|+||-+=|=| -++..+..+.+...++
T Consensus 89 id~iR~l~~~~~-~~~~~g~~KV~iI~~a~~m~~---~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 89 VDQVREINEKVS-QHAQQGGNKVVYIQGAERLTE---AAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred HHHHHHHHHHHh-hccccCCceEEEEechhhhCH---HHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 666665333333 334556666666776655443 4577888654433 2233444444444444
No 437
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=62.07 E-value=5.2 Score=48.34 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.||++|.|.+|+||+|+.|..+-+.
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 5999999999999999999988776
No 438
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=62.04 E-value=9.6 Score=40.99 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.1
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+.+.|.+||||+|+++..+-..++.++
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 568899999999999988877787765
No 439
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=61.92 E-value=5 Score=46.71 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
||....|+|++||||+||.|+-+-+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999999988764
No 440
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=61.91 E-value=5 Score=46.51 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.|+.+-+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 66678899999999999999988664
No 441
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=61.90 E-value=5.1 Score=45.60 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+.+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 66678899999999999999988765
No 442
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=61.85 E-value=5.2 Score=45.43 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|.+||||+||.|+.+-+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 677888999999999999999887643
No 443
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=61.82 E-value=4.5 Score=42.19 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=15.6
Q ss_pred ceEEEeecCCchhhHHhH
Q psy2649 77 NALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rl 94 (1637)
.++|||..||||+||+..
T Consensus 3 rimliG~~g~GKTTL~q~ 20 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQA 20 (143)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 479999999999998754
No 444
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=61.81 E-value=5.1 Score=45.69 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+-+-+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 677899999999999999999887654
No 445
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.73 E-value=5 Score=47.62 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
||....|+|++||||+||.|+.+-+..
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 677899999999999999999987653
No 446
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.71 E-value=5.1 Score=46.67 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|.+||||+||.++.+-+.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 67789999999999999999998764
No 447
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=61.67 E-value=5.1 Score=46.62 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+||.|+-+-+..
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 667888999999999999999887643
No 448
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.67 E-value=69 Score=32.53 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=52.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHhhhhhhhhhhHhhhccccc
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAA---VKEKLFCQNQAEECAEKIDLADRLVNGLASE 503 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~---~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E 503 (1637)
|.-+...+...+.++...+.++......-+.+.++|..+..+.++. .++...|+.+++..+.|.+.+-.+++-=+.+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3344555666666666666666666666666666666666555444 3456667777777777777666666544444
Q ss_pred ccchHHHHHHHhh
Q psy2649 504 NVRWKDSVLGLQQ 516 (1637)
Q Consensus 504 ~~rW~~~~~~l~~ 516 (1637)
.+-=+..+.+++.
T Consensus 98 veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 98 VEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 449
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=61.66 E-value=5.2 Score=45.49 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.++.+-+..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 777888999999999999999987643
No 450
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.56 E-value=5.2 Score=46.23 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+.+..|+|++||||+||.++.+-+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 377888899999999999999998763
No 451
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=61.54 E-value=15 Score=40.72 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.8
Q ss_pred eEEEeecCCchhhHHhHHHhhc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+.++|.+||||+|+++.-+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999988766553
No 452
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.52 E-value=41 Score=38.64 Aligned_cols=61 Identities=11% Similarity=0.238 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
+.+++..+.+++...++|.+++++++++.+++.+.++.+.++..+..++...+...+.|.+
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555555554443
No 453
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.51 E-value=5.2 Score=46.07 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+-+-+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66778899999999999999988764
No 454
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.50 E-value=29 Score=41.95 Aligned_cols=58 Identities=29% Similarity=0.458 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEEC 486 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~ 486 (1637)
-.++++.....++...++.+.+.+.++..++++++++.++..+...++.+++...+.|
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666666666666666666655555544433
No 455
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=61.46 E-value=9.2 Score=46.21 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=23.1
Q ss_pred CceEEEeecCCchhhHHhHH-Hhhccc------cceEEE
Q psy2649 76 GNALLVGVGGSGKQSLSRLS-AFISTL------EPFQIQ 107 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rla-a~~~~~------~~~~i~ 107 (1637)
-=++|+|++||||+|+++.. ..+..| .+|.+.
T Consensus 79 ~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~ 117 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEE
Confidence 34688999999999996654 445555 666663
No 456
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=61.46 E-value=5.2 Score=45.91 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|.+||||+||.|+-+-+..
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 677888999999999999999887643
No 457
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.36 E-value=5 Score=44.81 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++|+||+||.++-+-+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 66688899999999999999977764
No 458
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=61.35 E-value=5.6 Score=45.63 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|.+||||+||.++.+-+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 66788899999999999999988774
No 459
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.32 E-value=5.4 Score=44.80 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++||||+||.|+-+-+..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667889999999999999999987754
No 460
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=61.24 E-value=5.7 Score=43.05 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++--++++|++||||+||..++|-+...
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 5667788999999999999999876543
No 461
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=61.21 E-value=26 Score=40.22 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2649 456 ASLEATLQELTDKFDAAVK 474 (1637)
Q Consensus 456 ~~le~~l~~l~~~~~~~~~ 474 (1637)
...+.+|..|+..+..+..
T Consensus 172 ~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 462
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=61.17 E-value=5.3 Score=45.79 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.+..|+|++||||+||.|+.+-+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 66688899999999999999988764
No 463
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=61.12 E-value=6.3 Score=48.88 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=32.1
Q ss_pred hhhhhhhhhhhhhhhhhc---CCCCceEEEeecCCchhhH-HhHHHhhc--cccceEE
Q psy2649 55 VLFEDAMSHICRINRIME---APRGNALLVGVGGSGKQSL-SRLSAFIS--TLEPFQI 106 (1637)
Q Consensus 55 vlf~~~i~hi~ri~RvL~---~p~gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~~i 106 (1637)
+++++.+..+---..-+. .+.+-++++|++|+||||+ ++||+++. |.++.=+
T Consensus 77 ~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 77 AVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred HHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 355555554432222222 2346788999999999866 88999885 3444433
No 464
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=61.03 E-value=11 Score=43.61 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=20.6
Q ss_pred eEEEeecCCchhhHHh-HHHhhc--cccceEE
Q psy2649 78 ALLVGVGGSGKQSLSR-LSAFIS--TLEPFQI 106 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~r-laa~~~--~~~~~~i 106 (1637)
++|+|.+||||+|+++ |+.++. +.++.-+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 5789999999999987 555553 3444433
No 465
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=61.00 E-value=5.5 Score=44.51 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+.+..|+|++|+||+||.|+-+-+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566888999999999999999877643
No 466
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.98 E-value=5.4 Score=46.23 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.|+.+-+.
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 67788899999999999999988764
No 467
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=60.97 E-value=6 Score=39.22 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=16.5
Q ss_pred EEEeecCCchhhHHhH-HHhhc
Q psy2649 79 LLVGVGGSGKQSLSRL-SAFIS 99 (1637)
Q Consensus 79 lLvG~~GsGr~sl~rl-aa~~~ 99 (1637)
.|.|++|+||+++++. |..+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999765 54444
No 468
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=60.95 E-value=5.5 Score=46.21 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+.+..|+|++||||+||.|+.|-+.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367788999999999999999987654
No 469
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=60.86 E-value=5.4 Score=43.48 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=18.9
Q ss_pred CCCceEEEeecCCchhhHHhHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
|+.-..|+|++||||+||.|+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 44456789999999999999764
No 470
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=60.86 E-value=14 Score=44.35 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=40.3
Q ss_pred CCCceEEEeecCCchhhHHh-HHHhhc----cccceEEEeccccCcc---------hhhhHHHHHHHHhhcccccEEEEe
Q psy2649 74 PRGNALLVGVGGSGKQSLSR-LSAFIS----TLEPFQIQLKKNYGIP---------DLKIDLASLYLKAGLKNAGIMFLM 139 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~r-laa~~~----~~~~~~i~~~~~y~~~---------~f~~dLk~~~~~ag~~~~~~v~l~ 139 (1637)
.+++++++|..||||+|+.+ |+.++. +..++.|+-+..+... .-.-++.+++..| +...|-.+++
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a-LR~~PD~Iiv 225 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT-LRMRPDRILV 225 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH-hcCCCCEEEE
Confidence 68999999999999999976 555542 2345544433333210 0012355555444 5666766776
Q ss_pred cc
Q psy2649 140 TD 141 (1637)
Q Consensus 140 ~d 141 (1637)
.|
T Consensus 226 GE 227 (319)
T PRK13894 226 GE 227 (319)
T ss_pred ec
Confidence 66
No 471
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=60.86 E-value=4.7 Score=40.34 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.4
Q ss_pred ceEEEeecCCchhhHHhHHH
Q psy2649 77 NALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa 96 (1637)
+++++|..|+||+||.+--+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHh
Confidence 47899999999999966444
No 472
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=60.83 E-value=5.6 Score=44.98 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.|+....|+|++||||+||.++-+-+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 367778899999999999999888664
No 473
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=60.82 E-value=5.3 Score=46.30 Aligned_cols=27 Identities=33% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++.+..|+|++||||+||.|+.+-+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566778999999999999999888754
No 474
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=60.79 E-value=5.5 Score=45.30 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++|+||+||.++.+-+..
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 677889999999999999999887753
No 475
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.78 E-value=5.5 Score=46.79 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++.+..|+|++||||+||.|+.+-+..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 666888999999999999999887754
No 476
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=60.69 E-value=5.6 Score=44.86 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
+|.+..|+|.+||||+||.++-+-+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 667888999999999999999887653
No 477
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=60.65 E-value=13 Score=43.72 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhccc--cceEEEeccccCcchhhhHHHHHHHHhh
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFISTL--EPFQIQLKKNYGIPDLKIDLASLYLKAG 129 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~~~--~~~~i~~~~~y~~~~f~~dLk~~~~~ag 129 (1637)
..-.+++|++|+||+|+ ++||+++... ++.=+..- .|.... .+.|+....+.|
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D-~~r~~a-~~ql~~~~~~~~ 127 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD-TFRAAA-IEQLEEWAKRLG 127 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC-CCCHHH-HHHHHHHHHhCC
Confidence 34566789999999985 8899887654 23322211 132222 245666666665
No 478
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=60.57 E-value=5.4 Score=46.81 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++.+..|+|++||||+||.|+.+-+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566788999999999999999987753
No 479
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=60.57 E-value=5.5 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+-+-+.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 66677899999999999999988664
No 480
>PRK04132 replication factor C small subunit; Provisional
Probab=60.52 E-value=5 Score=53.84 Aligned_cols=107 Identities=7% Similarity=0.075 Sum_probs=69.7
Q ss_pred hcCCCCceEEEe--ecCCchhhHHhHHHhhc-----cccceEEEeccccCcchhhhHHHHHHHHhhccc-ccEEEEeccc
Q psy2649 71 MEAPRGNALLVG--VGGSGKQSLSRLSAFIS-----TLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKN-AGIMFLMTDS 142 (1637)
Q Consensus 71 L~~p~gh~lLvG--~~GsGr~sl~rlaa~~~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~-~~~v~l~~d~ 142 (1637)
|.-|+=|.+.-| +.+.||||+++..|.-. +..+++++.+..-++++.++-++.+.....+.+ +..|+++++.
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 455888888888 88999999999998876 567999998876677777777776665554443 3467778887
Q ss_pred cccccceeeeehhhhcc-----CCCCCCCCchHHHHHHHhhhc
Q psy2649 143 QVADEKFLVIINDMLAS-----GEVPDLFTDDEIENIVNNIAA 180 (1637)
Q Consensus 143 ~i~~~~fle~in~lL~~-----gevp~Lf~~ee~~~i~~~~~~ 180 (1637)
+-... +.-|.|+.. +.++=++...+...|+..++.
T Consensus 640 D~Lt~---~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 640 DALTQ---DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred ccCCH---HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 66543 234555543 333334444444444444443
No 481
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=60.46 E-value=5.7 Score=44.57 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|.+|+||+||.++.+-+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 677888999999999999999887643
No 482
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=60.41 E-value=5.5 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+.+..|+|++||||+||.++-+-+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 67788899999999999999988653
No 483
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=60.31 E-value=10 Score=46.66 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=46.9
Q ss_pred hhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhH-H---HhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccE
Q psy2649 60 AMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRL-S---AFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGI 135 (1637)
Q Consensus 60 ~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rl-a---a~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~ 135 (1637)
.+..++|...-+. .+-|++++|++|+||+.++.= + |-.+| .-++.++.-.+|+. ...|.-++.=
T Consensus 195 k~~~L~rl~~fve-~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---------~f~T~a~Lf~~L~~--~~lg~v~~~D 262 (449)
T TIGR02688 195 KLLLLARLLPLVE-PNYNLIELGPKGTGKSYIYNNLSPYVILISG---------GTITVAKLFYNIST--RQIGLVGRWD 262 (449)
T ss_pred HHHHHHhhHHHHh-cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------CcCcHHHHHHHHHH--HHHhhhccCC
Confidence 3334444433333 679999999999999977552 2 22233 34556777788887 5556666667
Q ss_pred EEEeccccc
Q psy2649 136 MFLMTDSQV 144 (1637)
Q Consensus 136 v~l~~d~~i 144 (1637)
+++|+|-.-
T Consensus 263 lLI~DEvgy 271 (449)
T TIGR02688 263 VVAFDEVAT 271 (449)
T ss_pred EEEEEcCCC
Confidence 777777544
No 484
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=60.27 E-value=6.1 Score=42.90 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+||.|+-+-+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 556778999999999999999887643
No 485
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=60.27 E-value=5.6 Score=46.73 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
||.+..|+|++||||+||.|+-+-+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 566788999999999999999887643
No 486
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.24 E-value=5.6 Score=46.67 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|+....|+|++||||+||.|+.+-+..
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 677888999999999999999987743
No 487
>KOG1808|consensus
Probab=60.21 E-value=11 Score=54.04 Aligned_cols=98 Identities=22% Similarity=0.404 Sum_probs=67.4
Q ss_pred cCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCc----------------hhHHHHhHHHhhhccCCEE
Q psy2649 1045 SSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQG----------------QEVIAEETIQIASTKGHWA 1108 (1637)
Q Consensus 1045 s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~g----------------q~~~a~~~l~~a~~~G~Wv 1108 (1637)
+...-|+++..+.++==++.+..+|+++|. ++..|..-+. .-..=+-.+-+|+.+|.|+
T Consensus 437 ~~~~~pillqG~tssGKtsii~~la~~~g~-----~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~ 511 (1856)
T KOG1808|consen 437 SSGKFPILLQGPTSSGKTSIIKELARATGK-----NIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWI 511 (1856)
T ss_pred hcCCCCeEEecCcCcCchhHHHHHHHHhcc-----CceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEE
Confidence 444569999999888889999999999873 4444333222 1112245677899999999
Q ss_pred EEehhhhHHh-hhhcHHHHHHhh----------hcCCCCceeEEEecCCC
Q psy2649 1109 ILQNVHLVKN-WLPTLDKKMEAS----------FEKPHKNYRLFISAEPA 1147 (1637)
Q Consensus 1109 lL~N~HL~~~-wl~~Le~~l~~~----------~~~~h~~FRLwLts~~~ 1147 (1637)
+|.-+||+++ -+..|.+.+... --.+|++|+||.|-.|.
T Consensus 512 vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 512 VLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred EeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 9999999877 233344444321 02579999999997654
No 488
>KOG2264|consensus
Probab=60.16 E-value=35 Score=42.14 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDL 492 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 492 (1637)
+.-...-++-...++.+.+.+-++++.++.+++.++++++........|..+|+.++++++..++-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 333444445555666677777777777788888888888888888877888887777777655543
No 489
>PRK06696 uridine kinase; Validated
Probab=60.10 E-value=7.5 Score=44.16 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=16.8
Q ss_pred EeecCCchhhHHhHHHhhc---cccceE
Q psy2649 81 VGVGGSGKQSLSRLSAFIS---TLEPFQ 105 (1637)
Q Consensus 81 vG~~GsGr~sl~rlaa~~~---~~~~~~ 105 (1637)
.|.+||||+|+++.-+-.. |..++.
T Consensus 28 ~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 28 DGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4778999999976555444 444443
No 490
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=60.02 E-value=5.7 Score=45.97 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=21.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.++-+-+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55567799999999999999887654
No 491
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=60.01 E-value=5.6 Score=46.08 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
||.+..|+|++||||+||.++.+-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 6678889999999999999998865
No 492
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=59.98 E-value=40 Score=38.26 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccccCCcceee---ehhhhhhhcchhhh
Q psy2649 481 NQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILL---VTAFVSYVGCFTRS 541 (1637)
Q Consensus 481 ~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~l~gd~lL---~aa~i~Y~G~~~~~ 541 (1637)
.++.-.+..+.++++-|+.|..|..|.+..++.-.... ..||+-| +.-.-+|..|+++.
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~--~~~~~sl~~~stpqk~f~~p~tp~ 156 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA--SSGDVSLNPCSTPQKSFATPLTPS 156 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCccccccCCchhhccCCCChh
Confidence 34445677888999999999999999999888655443 4666532 23333555666655
No 493
>PRK10908 cell division protein FtsE; Provisional
Probab=59.96 E-value=5.9 Score=44.91 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++||||+||.|+-+-+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56667799999999999999987664
No 494
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.96 E-value=5.8 Score=46.01 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++|+||+||.++.+-+.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 56677799999999999999988764
No 495
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=59.93 E-value=8.9 Score=45.66 Aligned_cols=25 Identities=48% Similarity=0.574 Sum_probs=21.1
Q ss_pred CCCceEEEeecCCchhhHHhHH-Hhh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLS-AFI 98 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rla-a~~ 98 (1637)
.+|+++++|..||||+|+.+.. .++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998744 444
No 496
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.84 E-value=5.9 Score=45.88 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.|+.+..|+|++||||+||.++.+-+..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4778889999999999999999887754
No 497
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=59.83 E-value=5.7 Score=46.07 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++|+||+||.|+-+-+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66677889999999999999987654
No 498
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=59.83 E-value=20 Score=34.82 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred eeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q psy2649 419 TFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEK 489 (1637)
Q Consensus 419 ~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 489 (1637)
+|++......-++..+-+-+......++.|..+++.|..++.+++.|.-.-+.+++..+.|+.++.....+
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~ 76 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQK 76 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 499
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=59.82 E-value=5.8 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCceEEEeecCCchhhHHhHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
++....|+|++||||+||.|+-+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
No 500
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=59.79 E-value=5.9 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=0.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHH
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
.|+....|+|.+||||+||.|+.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~ 66 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLN 66 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Done!