Query psy2649
Match_columns 1637
No_of_seqs 289 out of 1714
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:39:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 2E-288 7E-293 2999.7 56.0 1499 5-1637 1581-3241(3245)
2 4akg_A Glutathione S-transfera 100.0 9E-199 3E-203 2090.6 30.6 1042 4-1355 1543-2692(2695)
3 2rr7_A Dynein heavy chain 9; m 99.8 2.5E-23 8.6E-28 217.3 -6.6 106 331-436 1-154 (155)
4 3err_A Fusion protein of micro 99.8 8.3E-22 2.9E-26 244.3 1.4 132 315-452 34-207 (536)
5 2p65_A Hypothetical protein PF 96.7 0.00099 3.4E-08 71.3 4.9 74 73-146 41-128 (187)
6 1jbk_A CLPB protein; beta barr 96.7 0.0016 5.4E-08 69.9 6.1 73 73-145 41-127 (195)
7 1d2n_A N-ethylmaleimide-sensit 96.7 0.001 3.6E-08 76.4 4.7 88 54-142 35-133 (272)
8 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0046 1.6E-07 70.3 6.6 72 73-145 37-110 (262)
9 4b4t_J 26S protease regulatory 96.1 0.015 5E-07 69.6 10.4 104 24-143 146-251 (405)
10 2chg_A Replication factor C sm 96.0 0.0052 1.8E-07 67.5 5.3 73 75-147 38-116 (226)
11 3pvs_A Replication-associated 96.0 0.0069 2.3E-07 74.6 6.8 96 65-162 39-135 (447)
12 3h4m_A Proteasome-activating n 95.9 0.0063 2.2E-07 70.3 5.8 70 73-143 49-120 (285)
13 4b4t_L 26S protease subunit RP 95.8 0.025 8.6E-07 68.7 10.5 105 24-144 179-285 (437)
14 3pxg_A Negative regulator of g 95.7 0.007 2.4E-07 75.2 5.5 82 54-140 182-274 (468)
15 1qvr_A CLPB protein; coiled co 95.7 0.012 4.2E-07 78.8 8.2 100 64-163 179-301 (854)
16 1lv7_A FTSH; alpha/beta domain 95.7 0.012 4.2E-07 66.7 7.0 67 75-142 45-113 (257)
17 3pfi_A Holliday junction ATP-d 95.7 0.0083 2.9E-07 71.2 5.8 101 55-162 32-135 (338)
18 3b9p_A CG5977-PA, isoform A; A 95.6 0.017 5.9E-07 67.0 7.9 72 72-144 51-124 (297)
19 4b4t_I 26S protease regulatory 95.5 0.031 1.1E-06 67.1 9.7 104 24-143 180-285 (437)
20 3eie_A Vacuolar protein sortin 95.5 0.015 5.2E-07 68.5 7.0 71 72-143 48-120 (322)
21 4b4t_M 26S protease regulatory 95.5 0.03 1E-06 68.0 9.6 104 24-143 179-284 (434)
22 4b4t_K 26S protease regulatory 95.5 0.035 1.2E-06 67.4 10.1 103 24-142 170-274 (428)
23 3d8b_A Fidgetin-like protein 1 95.4 0.019 6.5E-07 68.7 7.7 72 71-143 113-186 (357)
24 3syl_A Protein CBBX; photosynt 95.4 0.011 3.9E-07 69.0 5.6 69 72-144 64-141 (309)
25 3vfd_A Spastin; ATPase, microt 95.4 0.015 5.3E-07 70.4 6.9 72 71-143 144-217 (389)
26 3uk6_A RUVB-like 2; hexameric 95.3 0.016 5.6E-07 69.4 6.4 48 55-102 47-97 (368)
27 4b4t_H 26S protease regulatory 95.2 0.037 1.3E-06 67.1 9.3 105 24-144 207-313 (467)
28 1r6b_X CLPA protein; AAA+, N-t 95.2 0.0085 2.9E-07 79.5 3.9 106 53-162 459-586 (758)
29 2x8a_A Nuclear valosin-contain 95.2 0.037 1.3E-06 63.4 8.7 104 24-143 8-113 (274)
30 3n70_A Transport activator; si 95.1 0.016 5.5E-07 59.5 5.0 76 59-143 8-86 (145)
31 3vkg_A Dynein heavy chain, cyt 95.1 0.11 3.6E-06 76.9 14.9 118 1045-1179 2182-2313(3245)
32 1um8_A ATP-dependent CLP prote 95.0 0.028 9.7E-07 67.7 7.5 75 71-145 68-149 (376)
33 2qp9_X Vacuolar protein sortin 95.0 0.024 8.1E-07 67.8 6.6 72 72-144 81-154 (355)
34 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.032 1.1E-06 65.7 7.2 71 72-143 42-115 (322)
35 1sxj_A Activator 1 95 kDa subu 94.7 0.012 4.1E-07 74.1 3.3 72 74-145 76-160 (516)
36 2v1u_A Cell division control p 94.7 0.037 1.3E-06 66.5 7.4 38 73-110 42-88 (387)
37 2chq_A Replication factor C sm 94.7 0.027 9.1E-07 65.9 5.9 71 76-146 39-115 (319)
38 3t15_A Ribulose bisphosphate c 94.7 0.034 1.2E-06 64.5 6.6 69 76-144 37-110 (293)
39 3pxi_A Negative regulator of g 94.6 0.014 4.9E-07 77.2 3.7 106 54-164 493-610 (758)
40 4fcw_A Chaperone protein CLPB; 94.6 0.024 8.1E-07 66.2 5.0 37 73-109 45-84 (311)
41 3u61_B DNA polymerase accessor 94.6 0.025 8.6E-07 66.5 5.3 69 76-145 48-117 (324)
42 2ce7_A Cell division protein F 94.5 0.044 1.5E-06 67.6 7.3 71 72-144 47-119 (476)
43 3hws_A ATP-dependent CLP prote 94.4 0.048 1.6E-06 65.3 7.3 70 73-143 49-126 (363)
44 1ofh_A ATP-dependent HSL prote 94.4 0.035 1.2E-06 64.6 6.0 73 73-145 48-128 (310)
45 1r6b_X CLPA protein; AAA+, N-t 94.3 0.035 1.2E-06 73.5 6.3 80 64-144 195-289 (758)
46 3cf0_A Transitional endoplasmi 94.3 0.028 9.7E-07 65.4 4.9 70 73-143 47-118 (301)
47 3pxi_A Negative regulator of g 94.3 0.028 9.7E-07 74.3 5.4 82 54-140 182-274 (758)
48 3cf2_A TER ATPase, transitiona 94.3 0.071 2.4E-06 69.6 8.9 69 73-144 236-308 (806)
49 1l8q_A Chromosomal replication 94.3 0.03 1E-06 65.9 5.0 65 75-145 37-110 (324)
50 2c9o_A RUVB-like 1; hexameric 94.2 0.054 1.9E-06 67.0 7.5 69 73-142 61-135 (456)
51 1njg_A DNA polymerase III subu 94.2 0.035 1.2E-06 61.6 5.3 67 76-146 46-139 (250)
52 3hu3_A Transitional endoplasmi 93.9 0.051 1.7E-06 67.6 6.3 68 73-142 236-306 (489)
53 1ixz_A ATP-dependent metallopr 93.9 0.072 2.5E-06 60.2 7.1 70 71-142 46-117 (254)
54 3co5_A Putative two-component 93.8 0.023 7.8E-07 58.3 2.4 78 58-146 10-88 (143)
55 1hqc_A RUVB; extended AAA-ATPa 93.7 0.029 9.8E-07 65.9 3.5 68 73-146 36-103 (324)
56 1iqp_A RFCS; clamp loader, ext 93.6 0.03 1E-06 65.7 3.4 71 76-146 47-123 (327)
57 2z4s_A Chromosomal replication 93.6 0.043 1.5E-06 67.5 4.8 74 66-145 119-206 (440)
58 1iy2_A ATP-dependent metallopr 93.5 0.088 3E-06 60.4 6.9 69 72-142 71-141 (278)
59 2qby_A CDC6 homolog 1, cell di 93.3 0.085 2.9E-06 63.3 6.7 37 73-109 43-85 (386)
60 1sxj_B Activator 1 37 kDa subu 93.3 0.052 1.8E-06 63.5 4.7 71 76-146 43-120 (323)
61 2zan_A Vacuolar protein sortin 93.1 0.079 2.7E-06 65.2 6.1 71 72-143 164-237 (444)
62 2dhr_A FTSH; AAA+ protein, hex 93.0 0.084 2.9E-06 65.5 6.0 71 71-143 61-133 (499)
63 3te6_A Regulatory protein SIR3 92.9 0.11 3.7E-06 60.6 6.5 73 73-145 43-144 (318)
64 2bjv_A PSP operon transcriptio 92.9 0.06 2E-06 61.3 4.3 51 59-109 13-66 (265)
65 3bos_A Putative DNA replicatio 92.8 0.032 1.1E-06 62.1 1.8 63 74-145 51-116 (242)
66 2r62_A Cell division protease 92.8 0.023 7.8E-07 64.9 0.5 70 75-145 44-115 (268)
67 1sxj_D Activator 1 41 kDa subu 92.7 0.072 2.5E-06 63.3 4.8 79 67-145 49-145 (353)
68 1fnn_A CDC6P, cell division co 92.7 0.12 4.2E-06 62.1 6.8 33 77-109 46-82 (389)
69 3ec2_A DNA replication protein 92.5 0.087 3E-06 56.0 4.6 46 74-125 37-86 (180)
70 2kjq_A DNAA-related protein; s 92.5 0.079 2.7E-06 54.6 4.1 34 74-107 35-71 (149)
71 1sxj_C Activator 1 40 kDa subu 92.2 0.14 4.7E-06 60.7 6.3 69 76-144 47-121 (340)
72 1jr3_A DNA polymerase III subu 92.2 0.078 2.7E-06 63.5 4.2 67 76-146 38-132 (373)
73 1qvr_A CLPB protein; coiled co 91.8 0.068 2.3E-06 71.6 3.3 105 53-162 559-689 (854)
74 1ypw_A Transitional endoplasmi 91.4 0.14 4.9E-06 67.7 5.7 68 73-141 236-305 (806)
75 2r44_A Uncharacterized protein 91.2 0.14 4.8E-06 60.3 4.8 37 75-111 46-82 (331)
76 4akg_A Glutathione S-transfera 91.1 0.079 2.7E-06 77.7 3.0 113 1047-1179 2005-2133(2695)
77 2qby_B CDC6 homolog 3, cell di 90.3 0.26 8.9E-06 59.1 6.3 37 74-110 44-91 (384)
78 1in4_A RUVB, holliday junction 90.1 0.27 9.1E-06 58.1 5.9 64 74-144 50-113 (334)
79 1ypw_A Transitional endoplasmi 90.1 0.078 2.7E-06 70.2 1.3 68 73-141 509-578 (806)
80 3cf2_A TER ATPase, transitiona 90.0 0.2 6.7E-06 65.5 5.0 69 72-143 508-580 (806)
81 3m6a_A ATP-dependent protease 89.6 0.3 1E-05 61.6 6.2 37 73-109 106-142 (543)
82 1g41_A Heat shock protein HSLU 89.5 0.33 1.1E-05 59.1 6.1 55 74-128 49-107 (444)
83 2ze6_A Isopentenyl transferase 89.5 0.29 9.9E-06 55.2 5.3 29 78-106 4-32 (253)
84 2gno_A DNA polymerase III, gam 89.4 0.34 1.2E-05 56.3 5.9 76 66-145 8-94 (305)
85 1a5t_A Delta prime, HOLB; zinc 89.2 0.28 9.7E-06 57.8 5.2 79 64-146 11-121 (334)
86 1ic2_A Tropomyosin alpha chain 89.1 2.6 8.9E-05 38.2 10.3 65 431-495 5-69 (81)
87 4gkw_A Spindle assembly abnorm 88.9 2.4 8.3E-05 40.4 10.0 78 426-503 12-89 (167)
88 1w5s_A Origin recognition comp 88.8 0.3 1E-05 59.1 5.2 26 74-99 49-76 (412)
89 1sxj_E Activator 1 40 kDa subu 88.8 0.25 8.6E-06 58.6 4.4 23 75-97 36-58 (354)
90 1g8p_A Magnesium-chelatase 38 88.4 0.17 5.8E-06 59.9 2.5 28 73-100 43-70 (350)
91 2w58_A DNAI, primosome compone 88.3 0.35 1.2E-05 52.2 4.7 31 76-106 55-88 (202)
92 1ojl_A Transcriptional regulat 88.2 0.28 9.5E-06 57.0 4.1 52 58-109 8-62 (304)
93 1ic2_A Tropomyosin alpha chain 87.7 2.4 8.1E-05 38.5 9.1 71 426-496 7-77 (81)
94 2jee_A YIIU; FTSZ, septum, coi 87.6 2.1 7.2E-05 38.3 8.2 53 433-485 7-59 (81)
95 3crm_A TRNA delta(2)-isopenten 87.6 0.46 1.6E-05 55.2 5.4 68 77-145 7-106 (323)
96 3nbx_X ATPase RAVA; AAA+ ATPas 87.1 0.28 9.5E-06 60.9 3.3 29 73-101 39-67 (500)
97 2eqb_B RAB guanine nucleotide 87.1 1.8 6.3E-05 40.0 7.8 90 428-517 1-91 (97)
98 2qen_A Walker-type ATPase; unk 86.3 0.43 1.5E-05 56.2 4.3 25 76-100 32-56 (350)
99 3vaa_A Shikimate kinase, SK; s 85.5 0.41 1.4E-05 51.7 3.3 32 74-105 24-55 (199)
100 2fna_A Conserved hypothetical 84.6 1.2 4E-05 52.5 7.0 34 76-109 31-64 (357)
101 2fxo_A Myosin heavy chain, car 84.2 3.7 0.00013 40.8 9.3 50 469-518 71-120 (129)
102 3foz_A TRNA delta(2)-isopenten 84.0 0.83 2.8E-05 52.6 5.0 73 78-158 13-117 (316)
103 3hnw_A Uncharacterized protein 83.7 4.8 0.00017 40.4 9.8 57 436-492 72-128 (138)
104 3bas_A Myosin heavy chain, str 82.8 3.1 0.00011 38.4 7.5 66 426-492 2-67 (89)
105 2dfs_A Myosin-5A; myosin-V, in 82.8 2.2 7.6E-05 57.7 9.2 75 439-516 970-1044(1080)
106 2orw_A Thymidine kinase; TMTK, 82.7 0.53 1.8E-05 50.2 2.6 81 77-159 5-102 (184)
107 3trf_A Shikimate kinase, SK; a 82.3 0.66 2.3E-05 49.1 3.2 31 75-105 5-35 (185)
108 1knq_A Gluconate kinase; ALFA/ 81.8 0.7 2.4E-05 48.5 3.1 31 74-104 7-37 (175)
109 3u1c_A Tropomyosin alpha-1 cha 81.1 6 0.0002 37.5 8.9 59 433-491 10-68 (101)
110 3u1c_A Tropomyosin alpha-1 cha 81.0 6.2 0.00021 37.4 9.0 72 427-498 11-82 (101)
111 3a8t_A Adenylate isopentenyltr 80.7 1.3 4.4E-05 51.7 5.0 64 77-141 42-138 (339)
112 2ga8_A Hypothetical 39.9 kDa p 80.7 0.38 1.3E-05 56.5 0.6 30 77-106 26-55 (359)
113 1kag_A SKI, shikimate kinase I 80.5 0.91 3.1E-05 47.4 3.5 29 76-104 5-33 (173)
114 3exa_A TRNA delta(2)-isopenten 80.2 1.4 4.9E-05 50.7 5.1 75 78-161 6-113 (322)
115 1odf_A YGR205W, hypothetical 3 80.2 1.9 6.3E-05 49.6 6.2 79 77-181 33-117 (290)
116 1tue_A Replication protein E1; 79.8 2.1 7.1E-05 46.2 5.9 58 29-100 25-84 (212)
117 3c8u_A Fructokinase; YP_612366 79.4 1 3.4E-05 49.0 3.4 28 73-100 20-47 (208)
118 3hnw_A Uncharacterized protein 79.3 7.8 0.00027 38.9 9.5 71 414-484 64-134 (138)
119 4eun_A Thermoresistant glucoki 79.1 0.99 3.4E-05 48.6 3.3 31 74-104 28-58 (200)
120 1zuh_A Shikimate kinase; alpha 78.8 0.96 3.3E-05 47.1 2.9 30 76-105 8-37 (168)
121 3iij_A Coilin-interacting nucl 78.4 1.2 4.1E-05 47.0 3.5 30 75-104 11-40 (180)
122 3mq7_A Bone marrow stromal ant 78.0 15 0.00052 34.7 10.1 67 431-500 31-97 (121)
123 2eyu_A Twitching motility prot 77.9 0.92 3.1E-05 51.3 2.6 28 72-99 22-49 (261)
124 2v4h_A NF-kappa-B essential mo 77.9 8.9 0.0003 36.1 8.6 35 433-467 25-59 (110)
125 1qhx_A CPT, protein (chloramph 77.6 1.5 5.1E-05 46.0 4.0 29 77-105 5-33 (178)
126 3kb2_A SPBC2 prophage-derived 77.5 1.2 4E-05 46.4 3.2 30 77-106 3-32 (173)
127 3u59_A Tropomyosin beta chain; 77.3 9.1 0.00031 36.2 8.9 31 439-469 23-53 (101)
128 1zp6_A Hypothetical protein AT 76.9 1.3 4.4E-05 47.1 3.3 27 74-100 8-34 (191)
129 1via_A Shikimate kinase; struc 76.8 1.2 4.3E-05 46.6 3.1 28 77-104 6-33 (175)
130 1lvg_A Guanylate kinase, GMP k 76.8 1 3.6E-05 48.5 2.6 26 74-99 3-28 (198)
131 3ni0_A Bone marrow stromal ant 76.8 19 0.00065 32.7 10.0 65 430-494 23-87 (99)
132 3u59_A Tropomyosin beta chain; 76.2 10 0.00034 35.9 8.8 64 431-494 8-71 (101)
133 3htk_A Structural maintenance 76.1 13 0.00044 31.4 8.7 56 428-483 1-56 (60)
134 3eph_A TRNA isopentenyltransfe 75.6 2.4 8.3E-05 50.5 5.4 73 77-157 4-108 (409)
135 2a5y_B CED-4; apoptosis; HET: 75.6 2.5 8.4E-05 53.4 5.9 35 63-97 136-174 (549)
136 3jvv_A Twitching mobility prot 75.2 1.1 3.9E-05 53.0 2.5 30 69-98 117-146 (356)
137 3jsv_C NF-kappa-B essential mo 75.1 20 0.0007 32.8 9.9 85 434-525 4-91 (94)
138 1kht_A Adenylate kinase; phosp 75.0 2.1 7.1E-05 45.3 4.3 25 76-100 4-28 (192)
139 2rhm_A Putative kinase; P-loop 74.9 1.6 5.4E-05 46.4 3.3 29 77-105 7-35 (193)
140 2b8t_A Thymidine kinase; deoxy 74.6 2.9 9.9E-05 45.9 5.4 85 69-153 6-109 (223)
141 1y63_A LMAJ004144AAA protein; 74.3 1.7 5.7E-05 46.2 3.3 30 76-105 11-41 (184)
142 1aky_A Adenylate kinase; ATP:A 74.2 1.6 5.5E-05 47.7 3.3 31 74-104 3-33 (220)
143 3t61_A Gluconokinase; PSI-biol 74.1 1.9 6.5E-05 46.3 3.8 30 76-105 19-48 (202)
144 1ye8_A Protein THEP1, hypothet 73.7 2 6.7E-05 45.5 3.6 26 77-102 2-27 (178)
145 3nwj_A ATSK2; P loop, shikimat 73.4 1.8 6.2E-05 48.5 3.4 31 75-105 48-78 (250)
146 3uie_A Adenylyl-sulfate kinase 73.1 1.5 5E-05 47.3 2.5 27 73-99 23-49 (200)
147 2pez_A Bifunctional 3'-phospho 73.0 2 6.8E-05 45.2 3.5 33 74-106 4-39 (179)
148 2v4h_A NF-kappa-B essential mo 72.9 23 0.00079 33.4 9.9 66 426-491 25-100 (110)
149 1kgd_A CASK, peripheral plasma 72.8 1.6 5.4E-05 46.1 2.7 26 74-99 4-29 (180)
150 3mq7_A Bone marrow stromal ant 72.7 13 0.00043 35.2 8.1 72 437-511 30-101 (121)
151 2iyv_A Shikimate kinase, SK; t 72.6 1.8 6.2E-05 45.6 3.1 29 77-105 4-32 (184)
152 1c1g_A Tropomyosin; contractIl 72.6 6.5 0.00022 43.9 8.0 82 435-516 16-97 (284)
153 2j41_A Guanylate kinase; GMP, 72.4 1.6 5.5E-05 47.0 2.6 26 74-99 5-30 (207)
154 1e6c_A Shikimate kinase; phosp 72.4 1.8 6.3E-05 45.0 3.0 29 77-105 4-32 (173)
155 3lw7_A Adenylate kinase relate 72.3 1.8 6.2E-05 44.8 3.0 27 77-104 3-29 (179)
156 1p9r_A General secretion pathw 72.0 1.9 6.3E-05 52.3 3.3 33 67-99 159-191 (418)
157 3oja_B Anopheles plasmodium-re 72.0 8.2 0.00028 49.1 9.6 59 462-520 525-583 (597)
158 3e2i_A Thymidine kinase; Zn-bi 72.0 2.1 7.2E-05 46.4 3.3 77 79-157 32-125 (219)
159 2jee_A YIIU; FTSZ, septum, coi 71.8 26 0.0009 31.3 9.6 15 500-514 60-74 (81)
160 3cm0_A Adenylate kinase; ATP-b 71.7 1.8 6.1E-05 45.7 2.8 28 77-104 6-33 (186)
161 2pt5_A Shikimate kinase, SK; a 71.6 1.9 6.6E-05 44.6 3.0 29 77-105 2-30 (168)
162 2c95_A Adenylate kinase 1; tra 71.5 2.3 7.8E-05 45.2 3.6 29 76-104 10-38 (196)
163 3tr0_A Guanylate kinase, GMP k 71.5 1.7 6E-05 46.6 2.7 26 74-99 6-31 (205)
164 1ly1_A Polynucleotide kinase; 71.1 1.8 6.2E-05 45.3 2.6 20 78-97 5-24 (181)
165 4gp7_A Metallophosphoesterase; 71.1 1.5 5E-05 46.0 1.9 21 74-94 7-28 (171)
166 3dm5_A SRP54, signal recogniti 71.0 6.3 0.00022 47.7 7.6 26 75-100 100-126 (443)
167 1vt4_I APAF-1 related killer D 70.9 4.1 0.00014 54.2 6.3 55 63-117 136-198 (1221)
168 2vli_A Antibiotic resistance p 70.8 1.8 6.1E-05 45.5 2.5 28 77-104 7-34 (183)
169 1cke_A CK, MSSA, protein (cyti 70.6 2 7E-05 47.0 3.0 28 77-104 7-34 (227)
170 3d3q_A TRNA delta(2)-isopenten 70.6 3.5 0.00012 48.1 5.1 64 77-142 9-105 (340)
171 2fxo_A Myosin heavy chain, car 70.5 18 0.00061 35.9 9.5 89 427-516 2-90 (129)
172 1c1g_A Tropomyosin; contractIl 70.4 9.7 0.00033 42.4 8.8 63 433-495 7-69 (284)
173 2cdn_A Adenylate kinase; phosp 70.2 2.2 7.6E-05 45.8 3.2 29 77-105 22-50 (201)
174 2p5t_B PEZT; postsegregational 69.9 2.6 9E-05 47.2 3.8 25 76-100 33-57 (253)
175 2jaq_A Deoxyguanosine kinase; 69.8 2 6.8E-05 46.0 2.7 28 77-104 2-29 (205)
176 2pcj_A ABC transporter, lipopr 69.8 1.9 6.6E-05 47.4 2.6 28 74-101 29-56 (224)
177 1z6t_A APAF-1, apoptotic prote 69.8 4.7 0.00016 51.3 6.6 35 63-97 132-169 (591)
178 3tif_A Uncharacterized ABC tra 69.7 1.9 6.4E-05 47.9 2.4 29 74-102 30-58 (235)
179 1htw_A HI0065; nucleotide-bind 69.4 2 6.8E-05 44.5 2.4 26 74-99 32-57 (158)
180 2vhj_A Ntpase P4, P4; non- hyd 69.4 3.7 0.00013 47.5 4.8 46 63-108 109-156 (331)
181 3tau_A Guanylate kinase, GMP k 69.3 2.1 7.2E-05 46.4 2.7 26 74-99 7-32 (208)
182 3r20_A Cytidylate kinase; stru 69.1 2.2 7.7E-05 47.1 2.9 28 77-104 11-38 (233)
183 2bwj_A Adenylate kinase 5; pho 68.9 2.5 8.6E-05 45.0 3.2 28 77-104 14-41 (199)
184 4e22_A Cytidylate kinase; P-lo 68.8 2.7 9.1E-05 47.2 3.5 32 73-104 25-56 (252)
185 3dl0_A Adenylate kinase; phosp 68.8 2.4 8.2E-05 46.1 3.1 28 77-104 2-29 (216)
186 1z6g_A Guanylate kinase; struc 68.8 2.2 7.5E-05 46.7 2.8 26 74-99 22-47 (218)
187 1qf9_A UMP/CMP kinase, protein 68.8 2.5 8.6E-05 44.7 3.2 28 77-104 8-35 (194)
188 3asz_A Uridine kinase; cytidin 68.8 2.2 7.4E-05 46.2 2.7 27 74-100 5-31 (211)
189 2ewv_A Twitching motility prot 68.5 2.1 7.3E-05 51.0 2.8 27 72-98 133-159 (372)
190 3io5_A Recombination and repai 68.1 5.2 0.00018 46.1 5.7 99 64-173 11-131 (333)
191 3nmd_A CGMP dependent protein 68.0 17 0.00059 31.7 7.4 37 434-470 21-57 (72)
192 3na7_A HP0958; flagellar bioge 68.0 15 0.00053 41.0 9.6 51 446-496 32-82 (256)
193 2if2_A Dephospho-COA kinase; a 68.0 2.7 9.3E-05 45.1 3.3 27 77-104 3-29 (204)
194 2cvh_A DNA repair and recombin 67.8 4.1 0.00014 44.1 4.7 43 66-108 8-53 (220)
195 2efr_A General control protein 67.5 10 0.00036 38.5 7.1 90 430-519 26-129 (155)
196 1e4v_A Adenylate kinase; trans 67.5 2.7 9.4E-05 45.6 3.2 28 77-104 2-29 (214)
197 3tlx_A Adenylate kinase 2; str 67.5 3.4 0.00012 46.0 4.0 31 74-104 28-58 (243)
198 1jjv_A Dephospho-COA kinase; P 67.4 2.6 9E-05 45.3 3.0 26 78-104 5-30 (206)
199 3be4_A Adenylate kinase; malar 67.4 2.8 9.7E-05 45.6 3.3 28 77-104 7-34 (217)
200 1tev_A UMP-CMP kinase; ploop, 67.4 2.5 8.7E-05 44.7 2.8 27 77-103 5-31 (196)
201 3fb4_A Adenylate kinase; psych 67.2 2.6 9.1E-05 45.7 3.0 28 77-104 2-29 (216)
202 1zd8_A GTP:AMP phosphotransfer 67.1 2.9 9.9E-05 45.9 3.3 28 77-104 9-36 (227)
203 2bdt_A BH3686; alpha-beta prot 67.1 2.6 8.9E-05 44.7 2.8 22 77-98 4-25 (189)
204 2z0h_A DTMP kinase, thymidylat 67.0 4.8 0.00016 42.7 5.0 28 78-105 3-33 (197)
205 1sgw_A Putative ABC transporte 66.4 2.5 8.6E-05 46.1 2.6 28 74-101 34-61 (214)
206 2ehv_A Hypothetical protein PH 66.1 2.6 8.8E-05 46.8 2.7 31 66-96 18-51 (251)
207 2cbz_A Multidrug resistance-as 65.9 2.4 8.2E-05 47.1 2.3 26 74-99 30-55 (237)
208 2yvu_A Probable adenylyl-sulfa 65.9 2.5 8.6E-05 44.7 2.4 33 67-99 4-37 (186)
209 1i84_S Smooth muscle myosin he 65.9 4.6 0.00016 55.7 5.6 21 75-95 169-189 (1184)
210 1rz3_A Hypothetical protein rb 65.8 3.4 0.00012 44.4 3.5 22 77-98 24-45 (201)
211 3nmd_A CGMP dependent protein 65.7 17 0.00058 31.7 6.9 46 427-472 21-66 (72)
212 1znw_A Guanylate kinase, GMP k 65.5 2.6 9E-05 45.5 2.5 29 72-100 16-45 (207)
213 3bas_A Myosin heavy chain, str 65.5 28 0.00096 32.0 9.0 60 431-490 13-86 (89)
214 4g1u_C Hemin import ATP-bindin 65.4 2.5 8.5E-05 47.8 2.4 28 74-101 36-63 (266)
215 2qi9_C Vitamin B12 import ATP- 65.4 2.5 8.6E-05 47.3 2.4 34 74-108 25-58 (249)
216 2wwf_A Thymidilate kinase, put 65.1 5 0.00017 43.1 4.7 31 76-106 11-41 (212)
217 1svm_A Large T antigen; AAA+ f 65.1 4 0.00014 48.6 4.2 34 72-105 165-199 (377)
218 1nn5_A Similar to deoxythymidy 65.0 5.1 0.00017 43.1 4.8 23 76-98 10-32 (215)
219 1zak_A Adenylate kinase; ATP:A 64.9 2.9 0.0001 45.6 2.8 27 77-103 7-33 (222)
220 1uf9_A TT1252 protein; P-loop, 64.9 3.6 0.00012 43.9 3.5 27 77-104 10-36 (203)
221 3f9v_A Minichromosome maintena 64.8 2.1 7.2E-05 54.4 1.8 29 77-105 329-357 (595)
222 2qor_A Guanylate kinase; phosp 64.8 3 0.0001 44.9 2.8 26 74-99 11-36 (204)
223 2ff7_A Alpha-hemolysin translo 64.7 2.6 8.9E-05 47.1 2.3 29 74-102 34-62 (247)
224 3a4m_A L-seryl-tRNA(SEC) kinas 64.6 3.1 0.00011 46.8 3.0 28 77-104 6-36 (260)
225 1ukz_A Uridylate kinase; trans 64.6 3.3 0.00011 44.4 3.1 28 77-104 17-44 (203)
226 2pbr_A DTMP kinase, thymidylat 64.5 3.8 0.00013 43.3 3.6 29 78-106 3-34 (195)
227 3tqc_A Pantothenate kinase; bi 64.4 16 0.00055 42.3 9.0 33 68-100 81-117 (321)
228 3a7p_A Autophagy protein 16; c 64.4 33 0.0011 34.4 9.7 48 433-480 69-116 (152)
229 1b0u_A Histidine permease; ABC 64.3 2.7 9.2E-05 47.5 2.4 28 74-101 31-58 (262)
230 2i3b_A HCR-ntpase, human cance 64.3 3.2 0.00011 44.3 2.8 24 76-99 2-25 (189)
231 2no2_A HIP-I, huntingtin-inter 64.2 30 0.001 33.0 9.1 93 431-523 7-103 (107)
232 1g6h_A High-affinity branched- 64.2 2.7 9.2E-05 47.3 2.3 28 74-101 32-59 (257)
233 3b85_A Phosphate starvation-in 64.0 2.7 9.1E-05 45.7 2.2 26 73-98 20-45 (208)
234 1gvn_B Zeta; postsegregational 64.0 5.1 0.00017 45.8 4.7 21 77-97 35-55 (287)
235 2d2e_A SUFC protein; ABC-ATPas 63.9 2.9 0.0001 46.8 2.5 25 74-98 28-52 (250)
236 1s96_A Guanylate kinase, GMP k 63.9 3 0.0001 45.7 2.6 28 73-100 13-41 (219)
237 3a00_A Guanylate kinase, GMP k 63.7 2.8 9.6E-05 44.4 2.3 23 78-100 4-26 (186)
238 1mv5_A LMRA, multidrug resista 63.7 2.7 9.2E-05 46.9 2.2 27 74-100 27-53 (243)
239 3k1j_A LON protease, ATP-depen 63.6 3.3 0.00011 52.9 3.3 30 74-103 59-88 (604)
240 1ji0_A ABC transporter; ATP bi 63.6 2.8 9.6E-05 46.6 2.3 29 74-102 31-59 (240)
241 2v9p_A Replication protein E1; 63.4 3.2 0.00011 47.9 2.8 32 72-103 122-154 (305)
242 2xb4_A Adenylate kinase; ATP-b 63.3 3.5 0.00012 45.2 3.0 27 78-104 3-29 (223)
243 1nks_A Adenylate kinase; therm 63.3 3.1 0.00011 43.9 2.5 21 78-98 4-24 (194)
244 2pze_A Cystic fibrosis transme 63.2 2.9 0.0001 46.1 2.4 27 74-100 33-59 (229)
245 2nq2_C Hypothetical ABC transp 63.2 2.9 0.0001 46.9 2.4 27 74-100 30-56 (253)
246 1ak2_A Adenylate kinase isoenz 63.1 3.9 0.00013 45.1 3.4 29 76-104 17-45 (233)
247 3zvl_A Bifunctional polynucleo 62.9 3.9 0.00013 49.5 3.6 33 73-105 255-288 (416)
248 2ihy_A ABC transporter, ATP-bi 62.8 3 0.0001 47.6 2.4 29 74-102 46-74 (279)
249 4ag6_A VIRB4 ATPase, type IV s 62.8 4.9 0.00017 48.2 4.4 38 74-111 34-74 (392)
250 2gza_A Type IV secretion syste 62.5 4.7 0.00016 47.8 4.1 29 73-101 173-201 (361)
251 2yz2_A Putative ABC transporte 62.4 3.1 0.00011 47.0 2.4 28 74-101 32-59 (266)
252 1rj9_A FTSY, signal recognitio 62.3 3.6 0.00012 47.5 2.9 26 74-99 101-126 (304)
253 3gfo_A Cobalt import ATP-bindi 62.2 3.1 0.00011 47.3 2.4 28 74-101 33-60 (275)
254 2zu0_C Probable ATP-dependent 62.2 3.3 0.00011 46.9 2.6 25 74-98 45-69 (267)
255 2ghi_A Transport protein; mult 62.2 3.1 0.0001 46.9 2.3 27 74-100 45-71 (260)
256 2ixe_A Antigen peptide transpo 62.1 3.2 0.00011 47.1 2.4 28 74-101 44-71 (271)
257 2qgz_A Helicase loader, putati 61.9 4.5 0.00015 46.8 3.8 23 75-97 152-174 (308)
258 2v54_A DTMP kinase, thymidylat 61.9 5.1 0.00017 42.8 4.0 31 76-106 5-36 (204)
259 1i84_S Smooth muscle myosin he 61.8 9.8 0.00034 52.5 7.6 41 433-473 858-898 (1184)
260 2olj_A Amino acid ABC transpor 61.7 3.2 0.00011 46.8 2.4 28 74-101 49-76 (263)
261 2bbw_A Adenylate kinase 4, AK4 61.7 4.3 0.00015 45.1 3.4 28 75-102 27-54 (246)
262 1vht_A Dephospho-COA kinase; s 61.1 4.1 0.00014 44.2 3.1 27 77-104 6-32 (218)
263 2onk_A Molybdate/tungstate ABC 61.1 3.5 0.00012 45.8 2.5 26 76-101 25-50 (240)
264 1vpl_A ABC transporter, ATP-bi 61.0 3.5 0.00012 46.3 2.5 29 74-102 40-68 (256)
265 2qt1_A Nicotinamide riboside k 60.4 4.2 0.00014 43.8 3.0 23 77-99 23-45 (207)
266 3vem_A Helicase protein MOM1; 59.8 77 0.0026 30.1 10.7 50 428-477 35-85 (115)
267 2grj_A Dephospho-COA kinase; T 59.7 4.2 0.00014 43.5 2.8 27 78-104 15-41 (192)
268 4a74_A DNA repair and recombin 59.5 3.9 0.00013 44.6 2.5 34 65-98 12-48 (231)
269 3kta_A Chromosome segregation 59.4 4.8 0.00016 42.2 3.1 31 71-101 22-52 (182)
270 3ake_A Cytidylate kinase; CMP 59.2 5.1 0.00017 42.9 3.4 29 77-105 4-32 (208)
271 2yhs_A FTSY, cell division pro 59.1 11 0.00037 46.3 6.4 26 75-100 293-318 (503)
272 1ex7_A Guanylate kinase; subst 58.7 3.5 0.00012 43.9 1.9 17 78-94 4-20 (186)
273 2pt7_A CAG-ALFA; ATPase, prote 58.6 3.9 0.00013 47.8 2.4 28 73-100 169-196 (330)
274 2bbs_A Cystic fibrosis transme 58.4 4.1 0.00014 46.6 2.5 26 74-99 63-88 (290)
275 3b9q_A Chloroplast SRP recepto 58.1 4.3 0.00015 46.8 2.6 26 74-99 99-124 (302)
276 3jsv_C NF-kappa-B essential mo 58.1 54 0.0018 30.1 9.1 77 427-503 4-90 (94)
277 3fvq_A Fe(3+) IONS import ATP- 58.1 4.5 0.00015 47.7 2.9 29 74-102 29-57 (359)
278 1n0w_A DNA repair protein RAD5 58.0 6.8 0.00023 43.0 4.2 33 65-97 11-46 (243)
279 3nh6_A ATP-binding cassette SU 57.8 3.3 0.00011 47.8 1.6 28 74-101 79-106 (306)
280 2plr_A DTMP kinase, probable t 57.6 4.3 0.00015 43.6 2.4 26 76-101 5-30 (213)
281 3lnc_A Guanylate kinase, GMP k 57.3 3.9 0.00013 45.0 2.0 24 76-99 28-52 (231)
282 1m8p_A Sulfate adenylyltransfe 57.2 6.9 0.00024 49.3 4.5 37 64-100 381-421 (573)
283 3sr0_A Adenylate kinase; phosp 57.1 5.2 0.00018 43.3 3.0 24 78-101 3-26 (206)
284 1u0j_A DNA replication protein 57.1 6.3 0.00021 44.3 3.7 55 30-97 71-126 (267)
285 3upu_A ATP-dependent DNA helic 57.1 4.8 0.00017 49.4 3.0 31 71-101 41-72 (459)
286 1gk4_A Vimentin; intermediate 57.0 68 0.0023 29.0 9.9 50 449-498 29-78 (84)
287 2it1_A 362AA long hypothetical 56.8 4.5 0.00016 47.8 2.6 29 74-102 28-56 (362)
288 3q8t_A Beclin-1; autophagy, AT 56.5 67 0.0023 29.9 9.9 29 469-497 62-90 (96)
289 2yyz_A Sugar ABC transporter, 56.5 4.7 0.00016 47.6 2.6 29 74-102 28-56 (359)
290 3ney_A 55 kDa erythrocyte memb 56.4 5.2 0.00018 43.0 2.7 24 74-97 18-41 (197)
291 3oja_B Anopheles plasmodium-re 56.3 19 0.00064 45.7 8.5 62 429-490 520-581 (597)
292 1z47_A CYSA, putative ABC-tran 56.3 4.6 0.00016 47.6 2.5 29 74-102 40-68 (355)
293 1g29_1 MALK, maltose transport 56.1 4.6 0.00016 47.9 2.5 28 74-101 28-55 (372)
294 3d31_A Sulfate/molybdate ABC t 55.8 4 0.00014 48.0 1.9 29 74-102 25-53 (348)
295 3rlf_A Maltose/maltodextrin im 55.7 4.8 0.00017 47.8 2.6 29 74-102 28-56 (381)
296 1q3t_A Cytidylate kinase; nucl 55.7 6.2 0.00021 43.5 3.3 30 75-104 16-45 (236)
297 1m7g_A Adenylylsulfate kinase; 55.5 4.9 0.00017 43.5 2.4 25 75-99 25-49 (211)
298 3iv1_A Tumor susceptibility ge 55.1 71 0.0024 28.4 9.1 56 437-492 16-71 (78)
299 2pjz_A Hypothetical protein ST 54.9 4.8 0.00016 45.4 2.3 28 72-99 27-54 (263)
300 1v43_A Sugar-binding transport 54.9 5.1 0.00017 47.6 2.6 29 74-102 36-64 (372)
301 3aez_A Pantothenate kinase; tr 54.8 5.8 0.0002 46.0 3.0 78 74-179 89-166 (312)
302 2jeo_A Uridine-cytidine kinase 54.6 5.3 0.00018 44.4 2.6 31 72-102 21-52 (245)
303 1x8y_A Lamin A/C; structural p 54.6 71 0.0024 29.1 9.6 49 427-478 12-60 (86)
304 2og2_A Putative signal recogni 54.5 5.3 0.00018 47.1 2.7 26 74-99 156-181 (359)
305 3a7p_A Autophagy protein 16; c 54.4 42 0.0014 33.7 8.5 53 429-481 72-124 (152)
306 3efg_A Protein SLYX homolog; x 54.2 31 0.001 30.9 6.9 50 444-493 12-61 (78)
307 4emc_A Monopolin complex subun 53.8 30 0.001 35.9 7.6 32 437-468 25-56 (190)
308 2w0m_A SSO2452; RECA, SSPF, un 53.3 5.7 0.00019 43.2 2.5 31 67-97 12-45 (235)
309 3ol1_A Vimentin; structural ge 53.2 68 0.0023 31.2 9.9 59 432-490 20-78 (119)
310 3cr8_A Sulfate adenylyltranfer 53.2 5.4 0.00018 50.0 2.5 38 63-100 353-394 (552)
311 1x6v_B Bifunctional 3'-phospho 53.0 8.3 0.00028 48.9 4.2 44 63-106 34-86 (630)
312 3cvf_A Homer-3, homer protein 53.0 22 0.00076 31.7 5.6 44 442-485 9-52 (79)
313 1gtv_A TMK, thymidylate kinase 52.9 6 0.00021 42.6 2.6 21 78-98 3-23 (214)
314 2npi_A Protein CLP1; CLP1-PCF1 52.9 6.5 0.00022 48.1 3.2 26 74-99 137-162 (460)
315 4eaq_A DTMP kinase, thymidylat 52.8 9.7 0.00033 41.8 4.3 24 76-99 27-50 (229)
316 3mov_A Lamin-B1; LMNB1, B-type 52.7 70 0.0024 29.7 9.3 70 426-498 20-89 (95)
317 3cve_A Homer protein homolog 1 52.7 47 0.0016 29.1 7.5 41 444-484 5-45 (72)
318 3sop_A Neuronal-specific septi 52.3 5.8 0.0002 44.9 2.4 24 77-100 4-27 (270)
319 2fz4_A DNA repair protein RAD2 52.3 14 0.00047 40.8 5.5 47 76-123 109-155 (237)
320 4gkw_A Spindle assembly abnorm 52.2 90 0.0031 29.9 9.9 66 426-491 19-84 (167)
321 2h92_A Cytidylate kinase; ross 52.0 8 0.00027 41.9 3.5 28 77-104 5-32 (219)
322 3kl4_A SRP54, signal recogniti 51.8 9.7 0.00033 46.1 4.4 25 75-99 97-122 (433)
323 1vma_A Cell division protein F 51.8 13 0.00045 42.8 5.4 30 75-104 104-136 (306)
324 2f6r_A COA synthase, bifunctio 51.8 7.2 0.00025 44.4 3.1 26 78-104 78-103 (281)
325 1g8f_A Sulfate adenylyltransfe 51.4 6 0.00021 48.9 2.5 39 63-101 379-421 (511)
326 3umf_A Adenylate kinase; rossm 51.0 6.7 0.00023 42.8 2.6 24 78-101 32-55 (217)
327 2px0_A Flagellar biosynthesis 50.9 7.5 0.00026 44.6 3.1 33 74-106 104-140 (296)
328 1oxx_K GLCV, glucose, ABC tran 50.7 4.6 0.00016 47.6 1.3 28 74-101 30-57 (353)
329 3gd7_A Fusion complex of cysti 50.7 6.8 0.00023 46.8 2.7 27 74-100 46-72 (390)
330 3sfz_A APAF-1, apoptotic pepti 50.2 17 0.00058 50.5 7.2 37 62-98 131-170 (1249)
331 1jcd_A Major outer membrane li 50.2 53 0.0018 26.8 6.9 44 447-490 5-48 (52)
332 4edh_A DTMP kinase, thymidylat 50.1 13 0.00044 40.4 4.7 24 76-99 7-31 (213)
333 3hdt_A Putative kinase; struct 50.0 11 0.00036 41.4 4.0 44 77-132 16-59 (223)
334 2dr3_A UPF0273 protein PH0284; 49.8 12 0.0004 41.2 4.4 34 66-99 11-48 (247)
335 3tui_C Methionine import ATP-b 49.4 6.9 0.00024 46.2 2.5 29 74-102 53-81 (366)
336 1zj6_A ADP-ribosylation factor 49.3 7.8 0.00027 40.6 2.7 28 66-93 7-34 (187)
337 3htk_A Structural maintenance 49.2 61 0.0021 27.1 7.8 52 439-490 5-56 (60)
338 2j37_W Signal recognition part 49.0 23 0.00078 43.7 7.2 33 75-107 101-136 (504)
339 4h22_A Leucine-rich repeat fli 48.8 41 0.0014 31.4 6.9 45 447-491 31-75 (103)
340 2eqb_B RAB guanine nucleotide 48.7 38 0.0013 31.4 6.6 8 458-465 52-59 (97)
341 2v71_A Nuclear distribution pr 48.6 77 0.0026 33.3 9.9 16 432-447 24-39 (189)
342 2f1r_A Molybdopterin-guanine d 48.4 5.4 0.00019 41.7 1.3 33 77-109 4-39 (171)
343 3tnu_B Keratin, type II cytosk 48.2 17 0.00057 36.1 4.7 42 430-471 34-75 (129)
344 2vp4_A Deoxynucleoside kinase; 48.1 6.9 0.00024 42.9 2.2 23 76-98 21-43 (230)
345 1tq4_A IIGP1, interferon-induc 48.1 8.3 0.00028 46.4 2.9 30 70-99 64-93 (413)
346 2v71_A Nuclear distribution pr 47.9 64 0.0022 33.9 9.2 34 439-472 49-82 (189)
347 1moz_A ARL1, ADP-ribosylation 47.9 8.2 0.00028 40.0 2.6 21 73-93 16-36 (183)
348 3lv8_A DTMP kinase, thymidylat 47.9 15 0.00052 40.5 4.8 21 76-96 28-48 (236)
349 3e70_C DPA, signal recognition 47.8 7.9 0.00027 45.1 2.7 26 74-99 128-153 (328)
350 1lw7_A Transcriptional regulat 47.8 6.9 0.00024 46.4 2.2 27 75-101 170-196 (365)
351 1f6b_A SAR1; gtpases, N-termin 47.4 7.6 0.00026 41.3 2.3 22 72-93 22-43 (198)
352 2oap_1 GSPE-2, type II secreti 47.4 8.8 0.0003 47.6 3.2 27 74-100 259-285 (511)
353 1nrj_B SR-beta, signal recogni 47.1 20 0.00069 38.4 5.8 21 74-94 11-31 (218)
354 1m2o_B GTP-binding protein SAR 47.0 7.2 0.00025 41.2 2.0 23 72-94 20-42 (190)
355 3ol1_A Vimentin; structural ge 46.8 1.1E+02 0.0038 29.7 10.2 73 436-518 45-117 (119)
356 3iuy_A Probable ATP-dependent 46.7 48 0.0016 35.7 8.8 23 75-97 57-79 (228)
357 3v9p_A DTMP kinase, thymidylat 46.7 13 0.00043 40.9 3.9 22 77-98 27-49 (227)
358 3o0z_A RHO-associated protein 46.7 72 0.0024 32.7 9.0 16 426-441 7-22 (168)
359 3tnu_A Keratin, type I cytoske 46.3 14 0.00048 36.7 3.8 38 433-470 39-76 (131)
360 1pzn_A RAD51, DNA repair and r 46.2 17 0.00059 42.6 5.3 34 66-99 119-155 (349)
361 1cr0_A DNA primase/helicase; R 45.7 9.8 0.00034 43.4 3.0 27 72-98 31-58 (296)
362 2b9c_A Striated-muscle alpha t 45.7 8.6 0.00029 39.0 2.2 71 420-490 75-145 (147)
363 1gd2_E Transcription factor PA 45.7 98 0.0033 27.0 8.4 43 449-491 25-67 (70)
364 2z43_A DNA repair and recombin 45.5 23 0.00078 41.1 6.1 33 65-97 94-129 (324)
365 2efr_A General control protein 45.4 89 0.003 31.8 9.5 20 474-493 98-117 (155)
366 3b60_A Lipid A export ATP-bind 45.3 8.7 0.0003 48.7 2.7 28 74-101 368-395 (582)
367 3q8t_A Beclin-1; autophagy, AT 45.3 1.1E+02 0.0037 28.5 9.4 57 431-487 10-66 (96)
368 4etp_A Kinesin-like protein KA 45.1 29 0.00099 41.5 7.0 59 433-491 4-62 (403)
369 1ny5_A Transcriptional regulat 44.7 36 0.0012 40.4 7.9 82 26-108 101-196 (387)
370 3fdi_A Uncharacterized protein 44.5 9.4 0.00032 41.0 2.4 28 77-104 8-35 (201)
371 1sq5_A Pantothenate kinase; P- 44.5 9.8 0.00034 43.9 2.8 25 76-100 81-105 (308)
372 1g16_A RAS-related protein SEC 44.1 13 0.00045 37.7 3.5 18 77-94 5-22 (170)
373 2xdj_A Uncharacterized protein 44.0 1.4E+02 0.0049 26.9 9.6 51 432-482 6-56 (83)
374 3b5x_A Lipid A export ATP-bind 43.9 9 0.00031 48.5 2.5 27 74-100 368-394 (582)
375 2ffh_A Protein (FFH); SRP54, s 43.7 23 0.00077 42.7 5.8 31 74-104 97-130 (425)
376 1uj2_A Uridine-cytidine kinase 43.4 12 0.00041 41.7 3.2 25 78-102 25-49 (252)
377 2ged_A SR-beta, signal recogni 43.3 11 0.00036 39.7 2.6 21 74-94 47-67 (193)
378 1ltq_A Polynucleotide kinase; 43.3 9.4 0.00032 43.7 2.3 28 77-104 4-32 (301)
379 2yl4_A ATP-binding cassette SU 43.0 9.2 0.00031 48.6 2.4 28 74-101 369-396 (595)
380 1yqt_A RNAse L inhibitor; ATP- 42.9 10 0.00035 47.5 2.7 27 73-99 45-71 (538)
381 1nlf_A Regulatory protein REPA 42.7 11 0.00037 42.7 2.8 24 74-97 29-52 (279)
382 3cve_A Homer protein homolog 1 42.6 1.3E+02 0.0043 26.4 8.6 59 426-484 8-66 (72)
383 1oix_A RAS-related protein RAB 42.6 11 0.00037 39.8 2.6 22 77-98 31-52 (191)
384 1wt6_A Myotonin-protein kinase 42.3 1.5E+02 0.0051 26.4 9.0 35 450-484 35-69 (81)
385 3vmx_A Voltage-gated hydrogen 42.3 86 0.0029 25.0 6.7 35 446-480 4-38 (48)
386 3dzd_A Transcriptional regulat 42.3 17 0.00059 43.0 4.5 83 26-109 101-188 (368)
387 4h22_A Leucine-rich repeat fli 42.3 1.5E+02 0.0052 27.7 9.5 24 430-453 35-58 (103)
388 2v3c_C SRP54, signal recogniti 42.1 12 0.00042 45.3 3.1 31 76-106 100-133 (432)
389 1pui_A ENGB, probable GTP-bind 42.1 9.5 0.00033 40.7 2.0 26 71-96 21-47 (210)
390 1u8z_A RAS-related protein RAL 42.0 8.5 0.00029 39.0 1.6 22 73-94 2-23 (168)
391 4tmk_A Protein (thymidylate ki 42.0 22 0.00075 38.5 4.9 50 77-126 5-55 (213)
392 2dpy_A FLII, flagellum-specifi 42.0 17 0.00057 44.2 4.3 42 67-108 148-190 (438)
393 3cvf_A Homer-3, homer protein 41.9 1.2E+02 0.0042 27.0 8.6 60 425-484 13-72 (79)
394 2dfs_A Myosin-5A; myosin-V, in 41.7 51 0.0018 44.6 9.4 17 78-94 159-175 (1080)
395 2b6h_A ADP-ribosylation factor 41.7 12 0.00041 39.5 2.7 25 70-94 24-48 (192)
396 3lfu_A DNA helicase II; SF1 he 41.6 13 0.00044 47.7 3.5 28 72-99 19-47 (647)
397 3qf4_B Uncharacterized ABC tra 41.2 10 0.00036 48.1 2.5 29 74-102 380-408 (598)
398 3ghg_A Fibrinogen alpha chain; 41.2 43 0.0015 40.2 7.3 121 409-540 82-207 (562)
399 2wji_A Ferrous iron transport 41.1 8.8 0.0003 39.3 1.5 20 76-95 4-23 (165)
400 2qag_B Septin-6, protein NEDD5 41.0 11 0.00037 45.5 2.4 27 72-98 36-65 (427)
401 2gks_A Bifunctional SAT/APS ki 40.7 13 0.00044 46.6 3.1 35 64-98 357-395 (546)
402 2xxa_A Signal recognition part 40.6 15 0.00052 44.4 3.7 33 75-107 100-136 (433)
403 1x79_B RAB GTPase binding effe 40.6 76 0.0026 30.3 7.5 95 430-527 4-109 (112)
404 2x77_A ADP-ribosylation factor 40.4 11 0.00036 39.6 2.0 21 73-93 20-40 (189)
405 3ice_A Transcription terminati 40.3 9 0.00031 45.3 1.5 26 74-99 173-199 (422)
406 3swk_A Vimentin; cytoskeleton, 40.2 1.2E+02 0.004 27.7 8.6 35 455-489 44-78 (86)
407 3t1o_A Gliding protein MGLA; G 40.1 11 0.00038 39.4 2.2 22 75-96 14-35 (198)
408 1zcb_A G alpha I/13; GTP-bindi 40.0 9.8 0.00034 45.0 1.8 23 76-98 34-56 (362)
409 2f9l_A RAB11B, member RAS onco 40.0 11 0.00038 40.0 2.1 22 77-98 7-28 (199)
410 3a7o_A Autophagy protein 16; c 40.0 1.6E+02 0.0056 25.2 8.5 52 440-491 19-70 (75)
411 3iv1_A Tumor susceptibility ge 39.9 1.5E+02 0.005 26.4 8.7 54 432-485 18-71 (78)
412 2k48_A Nucleoprotein; viral pr 39.8 90 0.0031 29.1 7.6 61 430-490 33-98 (107)
413 2ce2_X GTPase HRAS; signaling 39.8 11 0.00037 38.0 1.9 17 77-93 5-21 (166)
414 1v5w_A DMC1, meiotic recombina 39.7 23 0.00078 41.5 4.9 33 65-97 109-144 (343)
415 1xjc_A MOBB protein homolog; s 39.7 13 0.00045 38.7 2.5 31 77-107 6-39 (169)
416 2obl_A ESCN; ATPase, hydrolase 39.3 20 0.00068 42.0 4.3 34 74-107 70-103 (347)
417 4aby_A DNA repair protein RECN 39.1 8.8 0.0003 46.2 1.3 32 71-102 56-87 (415)
418 1z2a_A RAS-related protein RAB 39.1 11 0.00036 38.4 1.7 18 77-94 7-24 (168)
419 1fzq_A ADP-ribosylation factor 38.9 13 0.00043 38.9 2.3 21 74-94 15-35 (181)
420 3ihw_A Centg3; RAS, centaurin, 38.9 12 0.0004 39.3 2.1 23 74-96 19-42 (184)
421 2k48_A Nucleoprotein; viral pr 38.8 93 0.0032 29.0 7.5 49 426-474 36-103 (107)
422 3a7o_A Autophagy protein 16; c 38.8 1.8E+02 0.0062 25.0 8.5 58 430-487 16-73 (75)
423 2xv5_A Lamin-A/C; structural p 38.8 1.3E+02 0.0043 26.6 8.2 48 438-485 4-51 (74)
424 3he5_A Synzip1; heterodimeric 38.7 90 0.0031 23.5 6.0 41 428-468 6-46 (49)
425 1ksh_A ARF-like protein 2; sma 38.5 11 0.00038 39.3 1.8 22 73-94 16-37 (186)
426 4a82_A Cystic fibrosis transme 38.4 10 0.00034 48.1 1.7 28 74-101 366-393 (578)
427 3bk7_A ABC transporter ATP-bin 38.4 12 0.00042 47.4 2.5 27 73-99 115-141 (607)
428 2zej_A Dardarin, leucine-rich 38.4 11 0.00038 39.3 1.8 20 77-96 4-23 (184)
429 2gj8_A MNME, tRNA modification 38.3 11 0.00039 38.9 1.9 23 74-96 3-25 (172)
430 1jcd_A Major outer membrane li 38.3 79 0.0027 25.9 6.2 45 453-497 4-48 (52)
431 3tnu_A Keratin, type I cytoske 38.1 1.5E+02 0.0052 29.2 9.9 27 426-452 39-65 (131)
432 3q72_A GTP-binding protein RAD 37.9 12 0.00041 38.0 1.9 17 77-93 4-20 (166)
433 3hr8_A Protein RECA; alpha and 37.9 31 0.001 40.5 5.6 44 64-107 46-96 (356)
434 2dyk_A GTP-binding protein; GT 37.8 12 0.0004 37.8 1.8 17 77-93 3-19 (161)
435 2zts_A Putative uncharacterize 37.7 12 0.0004 41.2 1.9 32 65-96 17-52 (251)
436 1tf7_A KAIC; homohexamer, hexa 37.7 22 0.00077 44.2 4.7 21 74-94 38-58 (525)
437 3hjn_A DTMP kinase, thymidylat 37.6 26 0.00089 37.4 4.6 44 80-126 5-51 (197)
438 2ocy_A RAB guanine nucleotide 37.5 2.5E+02 0.0086 28.4 11.2 87 431-524 57-151 (154)
439 1g6u_A Domain swapped dimer; d 37.4 55 0.0019 24.5 4.7 25 446-470 20-44 (48)
440 3fpp_A Macrolide-specific effl 37.2 1.1E+02 0.0036 35.4 10.3 41 429-469 66-106 (341)
441 3ld9_A DTMP kinase, thymidylat 36.8 18 0.0006 39.6 3.1 26 72-97 17-43 (223)
442 1wt6_A Myotonin-protein kinase 36.7 2.1E+02 0.0073 25.4 9.1 57 436-492 14-70 (81)
443 4hlc_A DTMP kinase, thymidylat 36.7 29 0.001 37.2 4.8 46 78-126 5-52 (205)
444 3p32_A Probable GTPase RV1496/ 36.5 35 0.0012 40.1 5.9 31 76-106 80-113 (355)
445 1w4r_A Thymidine kinase; type 36.5 30 0.001 36.9 4.7 76 76-159 20-116 (195)
446 1yrb_A ATP(GTP)binding protein 36.3 15 0.00051 40.8 2.6 32 75-106 14-47 (262)
447 1ky3_A GTP-binding protein YPT 36.3 12 0.00043 38.4 1.8 19 75-93 8-26 (182)
448 3s4r_A Vimentin; alpha-helix, 36.3 94 0.0032 28.7 7.4 33 434-466 11-43 (93)
449 3vmx_A Voltage-gated hydrogen 36.2 66 0.0023 25.7 5.2 40 459-498 3-42 (48)
450 1j8m_F SRP54, signal recogniti 36.1 37 0.0013 38.8 5.8 32 75-106 98-132 (297)
451 2xv5_A Lamin-A/C; structural p 36.1 1.4E+02 0.0048 26.3 8.1 54 445-498 4-57 (74)
452 1lwu_C Fibrinogen gamma chain; 36.0 56 0.0019 37.5 7.2 47 424-470 4-50 (323)
453 1z0j_A RAB-22, RAS-related pro 36.0 13 0.00044 37.8 1.8 19 76-94 7-25 (170)
454 3m91_A Proteasome-associated A 36.0 1.1E+02 0.0037 24.9 6.7 29 455-483 18-46 (51)
455 3ni0_A Bone marrow stromal ant 35.6 1.8E+02 0.0063 26.5 8.6 69 435-517 21-89 (99)
456 2cxx_A Probable GTP-binding pr 35.4 14 0.00049 38.4 2.0 17 77-93 3-19 (190)
457 2lkc_A Translation initiation 35.4 15 0.00052 37.7 2.2 20 74-93 7-26 (178)
458 1ek0_A Protein (GTP-binding pr 35.4 13 0.00045 37.7 1.7 18 76-93 4-21 (170)
459 1r8s_A ADP-ribosylation factor 35.3 13 0.00045 37.6 1.7 18 77-94 2-19 (164)
460 2o5v_A DNA replication and rep 35.3 15 0.0005 43.4 2.3 32 71-102 22-53 (359)
461 2erx_A GTP-binding protein DI- 35.3 13 0.00046 37.7 1.8 17 77-93 5-21 (172)
462 1wms_A RAB-9, RAB9, RAS-relate 35.1 13 0.00046 38.1 1.8 19 76-94 8-26 (177)
463 1w1w_A Structural maintenance 34.9 17 0.00057 44.1 2.8 28 75-102 26-53 (430)
464 4fla_A Regulation of nuclear P 34.8 1.5E+02 0.005 30.1 9.2 67 429-498 72-138 (152)
465 3q85_A GTP-binding protein REM 34.7 14 0.00046 37.7 1.7 18 77-94 4-21 (169)
466 3o0z_A RHO-associated protein 34.6 96 0.0033 31.8 7.7 36 483-518 99-134 (168)
467 1f2t_A RAD50 ABC-ATPase; DNA d 34.6 17 0.00059 36.8 2.4 29 71-99 19-47 (149)
468 3qf7_A RAD50; ABC-ATPase, ATPa 34.5 16 0.00054 43.3 2.4 29 71-99 19-47 (365)
469 2ius_A DNA translocase FTSK; n 34.5 15 0.00051 45.4 2.2 21 75-95 167-187 (512)
470 1z08_A RAS-related protein RAB 34.4 14 0.00048 37.5 1.8 19 76-94 7-25 (170)
471 2wt7_A Proto-oncogene protein 34.3 2.1E+02 0.0073 24.2 9.1 41 449-489 19-59 (63)
472 4e61_A Protein BIM1; EB1-like 34.0 1.7E+02 0.0059 27.6 8.6 53 444-496 9-61 (106)
473 3k29_A Putative uncharacterize 33.9 84 0.0029 31.9 7.0 60 460-519 85-144 (169)
474 2qnr_A Septin-2, protein NEDD5 33.9 16 0.00054 42.0 2.2 21 75-95 18-38 (301)
475 2fn4_A P23, RAS-related protei 33.8 15 0.00053 37.6 2.0 18 76-93 10-27 (181)
476 1svi_A GTP-binding protein YSX 33.8 19 0.00067 37.6 2.8 20 74-93 22-41 (195)
477 3bk7_A ABC transporter ATP-bin 33.8 17 0.00057 46.2 2.6 26 74-99 381-406 (607)
478 2wjg_A FEOB, ferrous iron tran 33.7 14 0.00049 38.4 1.7 20 76-95 8-27 (188)
479 3swy_A Cyclic nucleotide-gated 33.6 1.3E+02 0.0045 23.9 6.5 29 445-473 4-32 (46)
480 3pqc_A Probable GTP-binding pr 33.6 18 0.00063 37.6 2.6 19 75-93 23-41 (195)
481 2hf9_A Probable hydrogenase ni 33.5 26 0.00088 37.8 3.8 25 75-99 38-63 (226)
482 2b5u_A Colicin E3; high resolu 33.4 2.3E+02 0.0078 33.8 11.5 54 442-495 317-370 (551)
483 1c1y_A RAS-related protein RAP 33.4 14 0.00048 37.4 1.5 19 76-94 4-22 (167)
484 3i00_A HIP-I, huntingtin-inter 33.3 1.2E+02 0.004 29.5 7.8 64 433-496 16-90 (120)
485 1yqt_A RNAse L inhibitor; ATP- 33.2 17 0.00059 45.4 2.6 26 74-99 311-336 (538)
486 2xtz_A Guanine nucleotide-bind 33.2 15 0.0005 43.3 1.8 22 77-98 11-32 (354)
487 2iwr_A Centaurin gamma 1; ANK 33.1 13 0.00045 38.3 1.3 20 74-93 6-25 (178)
488 3m9b_A Proteasome-associated A 33.1 33 0.0011 37.6 4.3 38 448-485 56-93 (251)
489 3gmt_A Adenylate kinase; ssgci 33.0 18 0.0006 39.8 2.3 27 78-104 11-37 (230)
490 1kao_A RAP2A; GTP-binding prot 33.0 14 0.0005 37.1 1.6 17 76-92 4-20 (167)
491 3qf4_A ABC transporter, ATP-bi 32.9 15 0.0005 46.6 1.9 29 74-102 368-396 (587)
492 3m91_A Proteasome-associated A 32.9 1.2E+02 0.0042 24.6 6.5 41 432-472 9-49 (51)
493 3tw8_B RAS-related protein RAB 32.8 15 0.00053 37.6 1.8 18 76-93 10-27 (181)
494 2hxs_A RAB-26, RAS-related pro 32.6 16 0.00053 37.6 1.8 20 75-94 6-25 (178)
495 1c9k_A COBU, adenosylcobinamid 32.4 32 0.0011 36.1 4.1 43 78-123 2-45 (180)
496 2w83_C C-JUN-amino-terminal ki 32.4 1.5E+02 0.0053 25.9 7.4 31 459-489 43-73 (77)
497 3llm_A ATP-dependent RNA helic 32.3 20 0.00067 39.3 2.6 21 75-95 76-96 (235)
498 4dk0_A Putative MACA; alpha-ha 32.3 80 0.0027 36.9 8.2 72 429-500 67-155 (369)
499 3qks_A DNA double-strand break 32.2 18 0.00062 38.8 2.2 30 71-100 19-48 (203)
500 3brv_B NF-kappa-B essential mo 32.2 1.9E+02 0.0065 24.9 7.7 62 443-504 9-70 (70)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=2e-288 Score=2999.71 Aligned_cols=1499 Identities=26% Similarity=0.474 Sum_probs=1225.4
Q ss_pred ccccCCceeeecccCCCCCccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeec
Q psy2649 5 EYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVG 84 (1637)
Q Consensus 5 ~~~~~~~~f~~f~~~~~~~~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~ 84 (1637)
..+.+|++||||+++ .|++| +.++|+++++++|++||+++.+|+||||++|++||+||+|||+||+||+||||+|
T Consensus 1581 ~~~~~pllf~~f~~~----~Y~~v-~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvg 1655 (3245)
T 3vkg_A 1581 DALKRPILYSNWLTK----DYQPV-NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVS 1655 (3245)
T ss_dssp GGGCSSCCCCSSCC--------CC-CHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEEST
T ss_pred hhcccCcchhhhccc----cCccC-CHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCC
Confidence 456789999999873 69999 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCCC
Q psy2649 85 GSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPD 164 (1637)
Q Consensus 85 GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp~ 164 (1637)
||||+|||||||||+|+++|||.++++|+..+|++|||.+|++||++|+++||||+|+||.+++|||+||+||++|||||
T Consensus 1656 GSGkqSLtrLAa~i~~~~vfqi~i~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~ 1735 (3245)
T 3vkg_A 1656 GGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPG 1735 (3245)
T ss_dssp TSSHHHHHHHHHHHTTCEEECCC----CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTT
T ss_pred CCcHHHHHHHHHHHhCCeeEEEeeeCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhhcCCCccccCCCCccccc--chhhHHHHhhccC---C-CccccccCcceeEecccccccccC----
Q psy2649 165 LFTDDEIENIVNNIAAEPEIPLTADLDPLTML--TDDATIAFWNNEG---L-PNDRMSTENATILVNSQRWPLMID---- 234 (1637)
Q Consensus 165 Lf~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~--s~~~~~~~f~~~v---L-~v~~~s~~~~~~~~~~~~~P~l~~---- 234 (1637)
||+.||+++|++.+|+.++. .|.. |++++|+||++|| | ||+||||.|+.||.||++||+|+|
T Consensus 1736 LF~~dE~~~i~~~~r~~a~~--------~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncctI 1807 (3245)
T 3vkg_A 1736 LFEGEEFTALMHACKETAQR--------NGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVL 1807 (3245)
T ss_dssp SSCTTTHHHHHHHHHHHHHH--------TTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHSEE
T ss_pred cCCHHHHHHHHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCcee
Confidence 99999999999999988766 4432 8899999999999 8 999999999999999999999999
Q ss_pred ------hhhhh------------------------------------------hchHHHHHHHHhhhHhhhhHHHhhccc
Q psy2649 235 ------PQEVL------------------------------------------RKPCAVFMAYVHSSVNQISVSYLLNER 266 (1637)
Q Consensus 235 ------p~~al------------------------------------------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 266 (1637)
|++|+ ++.++.+|+.+|.++.+++.+|+++.+
T Consensus 1808 DWf~~Wp~eAL~~Va~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~sv~~~s~~~~~~~~ 1887 (3245)
T 3vkg_A 1808 DWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQG 1887 (3245)
T ss_dssp EEEESCCHHHHHHHHHHHTTTSCCCCTTCCCCHHHHHHHHC----CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred eecCCCCHHHHHHHHHHHHhhcccccccccccccccchhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67663 345678899999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHhhhchhhh----hhHHHhHHhhhhhhhhhHHhhhhhcch
Q psy2649 267 RYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLGNEE----KKVRAIEEDVSYKQKVCAEDLEKAEPA 342 (1637)
Q Consensus 267 r~~~~TP~~fl~~l~~f~~l~~~k~~~l~~~~~~l~~gL~kL~e~~~ee----~k~~~~~~e~~~~~~~~~~~L~~a~P~ 342 (1637)
|++|+||++|++||++|+++|.+|++++..+++||++||+||.+|.++- +++++.+.+++++++++++-|.+..-.
T Consensus 1888 R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1888 RQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999983322 122222333333333333322222211
Q ss_pred HHHHHH---HhhhhccC---ChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhhhccccCCcCcchhhhhh
Q psy2649 343 LVAAQE---ALDTLDKN---NLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVIN 416 (1637)
Q Consensus 343 l~~A~~---al~~l~k~---dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k~~~i~~~a~~L~~WV~A 416 (1637)
-++|.+ .+..+.+. .-.|+.. .+...| ..+..+ .||
T Consensus 1968 ~~~ae~~k~~v~~~~~~~~~~~~ei~~-------~k~~~e---------------------~dL~~A-~Pa--------- 2009 (3245)
T 3vkg_A 1968 QQAAEIKQKDARELQVQLDVRNKEIAV-------QKVKAY---------------------ADLEKA-EPT--------- 2009 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---------------------HCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---------------------HHHhhc-CCC---------
Confidence 111111 00000000 0000000 000000 001111 123
Q ss_pred heeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHh
Q psy2649 417 IITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRL 496 (1637)
Q Consensus 417 i~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L 496 (1637)
+|||++++++++++++++++|++++++|++++++|++|+++|+++++|+++|+.+++.|+.||+||++|
T Consensus 2010 -----------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2010 -----------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccchHHHHHHHhhccccCCcceeeehhhhhhhcchhhhHHHHhhhccccccccccCCC---------------
Q psy2649 497 VNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLDLLNKFWLPTIKKSKID--------------- 561 (1637)
Q Consensus 497 i~~L~~E~~rW~~~~~~l~~~~~~l~gd~lL~aa~i~Y~G~~~~~~R~~ll~~~w~~~l~~~~id--------------- 561 (1637)
|++|++|+.||++++++++.+..+|+|||||||||++|+|||+.+||+.++.. |...|++.+|.
T Consensus 2079 i~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~-W~~~l~~~~Ip~s~~~~l~~~L~~~~ 2157 (3245)
T 3vkg_A 2079 LDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRK-WMIRLDSVGIKFKSDLSVPSFLSKPE 2157 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH-HHHHHHHHTCCCCTTCCHHHHTSCHH
T ss_pred HHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHhcCCCCCCCCCHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999987 99999988871
Q ss_pred cccccCCccccCcc----ccceeeccc----------------cccc-CCceEEEEecccchhHHHHHHHhcCcEEEEec
Q psy2649 562 WFHEWPQEALESVS----LKFLVKSCE----------------SHRY-GNKLTVIRLGQKRVMDQIEKAVMSGFVLLIEN 620 (1637)
Q Consensus 562 ~~~~w~~~gLp~d~----n~~i~~~~~----------------~~~~-~~~l~v~~~~~~~~~~~le~ai~~G~~lli~d 620 (1637)
+++.|+.+|||+|+ ||+|+.++. ++++ ++++.|++++|++|+++||+||++|+||||||
T Consensus 2158 ~i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~~~d~~f~~~LE~ai~fG~pvLien 2237 (3245)
T 3vkg_A 2158 ERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQD 2237 (3245)
T ss_dssp HHHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCCC-----HHHHHHHHHHTCCEECCC
T ss_pred HHHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEeecCchhHHHHHHHHHHcCCeEEEcc
Confidence 57899999999998 999998875 2333 45799999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhhhcCc--ceeEecccccccCCCceeeeeecccCCCCCccccccceEEEEEecccchhHHHHHHH
Q psy2649 621 IGESVDPVLDNLIGRNLIRKG--KVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEV 698 (1637)
Q Consensus 621 v~e~~dp~L~~ll~~~~~~~g--~~I~ig~~~i~~~p~F~L~l~T~~~~~~~~p~~~~~~~vInftvt~~~Le~qlL~~v 698 (1637)
| |.+||+|+|+|.|++++.| .+|++||++|+|||+|||||+|+++||||+||++++||+||||||++|||+|||+.|
T Consensus 2238 v-E~lDP~L~pvL~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL~~v 2316 (3245)
T 3vkg_A 2238 V-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEA 2316 (3245)
T ss_dssp C-C----------------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHHHHH
T ss_pred c-cccchhHHHHHHHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHHHHH
Confidence 9 8999999999999999887 389999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHhhhhhccccceeeeeccchhHHHHhhhccCCCccchhHHHhhhhhhhhhHHHHHHHhhhcchhHHHHHH
Q psy2649 699 VKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIEIKVKEGKKTAKKIDE 778 (1637)
Q Consensus 699 v~~e~PeLe~~~~~l~~~~~~~~~~l~~lE~~lL~~L~~s~g~iLed~~li~~L~~~K~~~~~i~~~l~e~~~~~~~i~~ 778 (1637)
|++|+||||++|.+|+++.++++++|++|||+||+.|++++|+||||++||++|+++|.++.+|+++++++++++++|++
T Consensus 2317 v~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~~a~~te~~I~~ 2396 (3245)
T 3vkg_A 2317 LKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISE 2396 (3245)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhhhhhHHHHhhhcccccCccccccchhhHHHHHHHhhhcccc---cchHHHHhhhhhceeeeeeeeeccccc
Q psy2649 779 AREQYRPAAERASVIYFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKS---DNLKGRVANLVESITFMTFQYTSRGLF 855 (1637)
Q Consensus 779 ~r~~Y~pvA~~~a~ly~~l~~l~~l~~mYqfSl~~f~~lf~~~l~~~~~~---~~~~~r~~~L~~~lt~~~y~~v~r~Lf 855 (1637)
+|+.|||+|.|||.|||++++|+.|| ||||||.||+++|..+|++++++ +++++|+.+|++++|+.+|.+||||||
T Consensus 2397 ~R~~YrpvA~r~s~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~~vy~~v~RgLF 2475 (3245)
T 3vkg_A 2397 VSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLL 2475 (3245)
T ss_dssp HHHHSHHHHHHHHHHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 99999999999999999988776 789999999999999999999999999
Q ss_pred ccchhhhhhhhee-eeeccccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccchhhccCC
Q psy2649 856 ERDKLIFMAQMTI-QVKSLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREELDFLLRFPF 934 (1637)
Q Consensus 856 ~~d~l~f~~~l~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 934 (1637)
++|||+|+|+||+ .+ ....+.++++||+||++|+.
T Consensus 2476 ekdKLlFs~~l~~~~i--------------------------------------------~~~~~~i~~~E~~flL~g~~ 2511 (3245)
T 3vkg_A 2476 NDDKLTFALQLTIISV--------------------------------------------KGTSNEIEESEWDFLLKGGD 2511 (3245)
T ss_dssp GGGTTHHHHHHHHHHT--------------------------------------------TTSTTCCCHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHHH--------------------------------------------HhccCCCCHHHHHHHhcCCc
Confidence 9999999999993 44 33467899999999999875
Q ss_pred CCCC-----CCccccccccccccccccc-chhhhhccchhhHHHHHHHHhhhhcCCCCcCCCchhhcc------------
Q psy2649 935 QPGV-----SSPVDFLTNTLWGGVRALS-NLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQEWKN------------ 996 (1637)
Q Consensus 935 ~~~~-----~~~~~wl~~~~w~~i~~L~-~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~lp~~~~~------------ 996 (1637)
.... +++++|+++..|.+++.|+ .+|.|.++.+++..+.+.|+.|+++..||....|..|.+
T Consensus 2512 ~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~pp~~w~~~~~~~~~~~~~~ 2591 (3245)
T 3vkg_A 2512 NLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTI 2591 (3245)
T ss_dssp TGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGGGTTHHHHHHHTHHHHHHHTCSSCSSCCCCCTTHHHHHHHHSSCCCHH
T ss_pred cccccccccCCccccCCHHHHHHHHHHHhhChhhhhHHHHHHhCHHHHHHHhcccCcccccCccccccccccccccccch
Confidence 4321 3457999999999999998 899999999999999999999999999998655588853
Q ss_pred chHHHHHHHhhhcCCCchhHHHHHHHHHhhcCccccccccchhhhhh-ccCCCCcEEEEeCCCCCCchhHHHhcccccee
Q psy2649 997 KSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIEFEQSYR-ESSSTTPIFFILSPGVDPTRDVEAVGRKMGFT 1075 (1637)
Q Consensus 997 l~~fqklll~r~lrpdrl~~~~~~~v~~~lg~~~~~~~~~~l~~~~~-~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~ 1075 (1637)
+++|||||++||+||||+..|+++||.+.||.+|++++++||+.+|+ +|+++||+|||+|||+||+..|.+||+++|
T Consensus 2592 l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~~~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA~~~~-- 2669 (3245)
T 3vkg_A 2592 VSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLH-- 2669 (3245)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTCC--CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCccCCCCCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHHHHhC--
Confidence 69999999999999999999999999999999999999999999999 999999999999999999999999999986
Q ss_pred ccCCCccccccCCchh-HHHHhHHHhhhccCCEEEEehhhhHHhhhhcHHHHHHhhhcCCCCceeEEEecCCCCCCCccc
Q psy2649 1076 TDLRNLHNVSLGQGQE-VIAEETIQIASTKGHWAILQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYHI 1154 (1637)
Q Consensus 1076 ~~~~~l~~iSlG~gq~-~~a~~~l~~a~~~G~WvlL~N~HL~~~wl~~Le~~l~~~~~~~h~~FRLwLts~~~~~~~~~~ 1154 (1637)
.+++.|||||||+ ..|+++|++|+++|+||+||||||+++||+.||++++.+ ++|++|||||||+|+++
T Consensus 2670 ---~~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~--~~h~~FRLwLTsep~~~----- 2739 (3245)
T 3vkg_A 2670 ---KQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL--SPHPSFRLFMTSEIHPA----- 2739 (3245)
T ss_dssp ---CCCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTC--CCCTTCEEECCEESCTT-----
T ss_pred ---CCcEEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHcc--CCCCCeeEEEEecCCCC-----
Confidence 4799999999999 599999999999999999999999999999999999875 68999999999999986
Q ss_pred cccccccccccccCCCCchhhhhHHHHhhcCChhHHhhhhhhhhhHHHHHHHHHHHHhhhhhhccCCCCCCCcccccCCc
Q psy2649 1155 IPQGVLDSSIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGD 1234 (1637)
Q Consensus 1155 fP~~lLq~s~kv~~E~p~glk~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~plGw~~~Y~f~~~D 1234 (1637)
||++|||+|+||++|||+|+|+||+|+|.+++++.+ |.++..|++|+|+|||||||++|||+|||+|||++|+||++|
T Consensus 2740 fP~~iLq~siKit~EpP~GlkaNl~rs~~~~~~~~~--~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sD 2817 (3245)
T 3vkg_A 2740 LPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRM--DKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2817 (3245)
T ss_dssp SCHHHHHTSEECCBCCCSSHHHHHHHHHTTSCHHHH--TSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHH
T ss_pred CCHHHHHhhhHheeCCChhHHHHHHHHHHhCCHHHh--ccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHH
Confidence 999999999999999999999999999999988754 455778999999999999999999999999999999999999
Q ss_pred ceEeehhhHHHhhhc---------CCCCcchhhHHHhhhccCCCCCChhhhHHHHHHHHHhcCcccccccccccC--CCC
Q psy2649 1235 LTISSLVLYNYLEAN---------NNVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAP--GFP 1303 (1637)
Q Consensus 1235 l~~~~~~l~~~l~~~---------~~ipw~al~~li~ei~YGGrv~d~~Drr~L~~~l~~~~~~~~~~~~~~~~~--~~~ 1303 (1637)
|.+|.++|++|++.+ +.|||++|+|++|+|+|||||||+||||+|++|+++||+|+++++++.+.+ .+.
T Consensus 2818 l~~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~~~~~ 2897 (3245)
T 3vkg_A 2818 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLS 2897 (3245)
T ss_dssp HHHHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGGGTEE
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCCCCCC
Confidence 999999999999874 579999999999999999999999999999999999999999999988876 367
Q ss_pred CCCCCCccccccccccCCCCCCCcccccCCCccccchhhhhHHHHHHHHhcccCCccCC-------C-------CCCcch
Q psy2649 1304 APPNQDYQGYHTYIDESLPPESPILYGLHPNAEIGFLTTQAENVFKIIFELQPRDTAAA-------Q-------GSGVTR 1369 (1637)
Q Consensus 1304 ~p~~~~~~~~~~~i~~l~~~~~p~~~gl~~na~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~-------~~~~~~ 1369 (1637)
+|+..++++|.+||+++|+.++|++||||+||++++++++++.++++|+.+||++.+.+ + +++.++
T Consensus 2898 ~P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 2977 (3245)
T 3vkg_A 2898 VPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKG 2977 (3245)
T ss_dssp CCCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCc
Confidence 89999999999999999999999999999999999999999999999999999765431 0 012245
Q ss_pred HHHHHHHHHHHHHhCCCCCcHhhhhhccccCCceEEEeehhhhhhHhHHHHHHhhhhhhccccccceeecccHHHHhhcc
Q psy2649 1370 EEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYIIVAFQECERMNILMSEIKRSLKELNLGLKGELTITTDMEALEYSI 1449 (1637)
Q Consensus 1370 ~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~~~p~~~~l~qE~~~~n~Ll~~I~~sL~~l~~~l~G~~~~s~~l~~l~~~L 1449 (1637)
++.+...+++++++||+.++..... .....+|+++|+.||++|||+|++.|++||.+|.++|+|.++||+++++++++|
T Consensus 2978 ~~~v~~~~~~~l~~lP~~~~~~~~~-~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl 3056 (3245)
T 3vkg_A 2978 KAKLRATITEWTKLLPKPLKQLKRT-TQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSI 3056 (3245)
T ss_dssp HHC-----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHhCccccchhhcc-ccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 5568889999999999988743211 112358999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhhhcccccccchhHHHHHHHHHHHHHhhhhccC-CCCchhhcccccCchhHHHHHHHHhhhhcCCCcccccc
Q psy2649 1450 FMDTVPPSWEKRAYPSMLGLGGWFADLMLRLKELENWVGDF-QLPSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCL 1528 (1637)
Q Consensus 1450 ~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~R~~~l~~w~~~~-~~p~~~wL~~~f~P~aFLtA~~Q~~ar~~~~~ld~L~~ 1528 (1637)
..|+||..|.+.+|||.++|++|++||.+|++|++.|+..+ +.|.+|||||||||+|||||++|++||+++||+|+|.|
T Consensus 3057 ~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~~~~~~p~~~WLsgff~Pq~FLTA~~Q~~ARk~~~plD~l~l 3136 (3245)
T 3vkg_A 3057 SKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRL 3136 (3245)
T ss_dssp ---------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC-------CCGGGSSCHHHHHHHHHHHHHHHTC------CC
T ss_pred HcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEecCCCcchHHHHHHHHHHHHHHhCCCCcccee
Confidence 99999999999999999999999999999999999999875 68999999999999999999999999999999999999
Q ss_pred -ccccccccccccCCCCCCCccccccccccccccccccccccccccccCCCCcEEEEEeeccchhh---ccccccCcccc
Q psy2649 1529 -QCDVTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDAKLKELFPMMPVIYIKAITQDKQD---LRNMYECPVYK 1604 (1637)
Q Consensus 1529 -~~~v~~~~~~~~~~~~~~g~~I~GL~L~Ga~wd~~~~~L~e~~~~~~~~~lP~i~~~~~~~~~~~---~~~~y~cPvY~ 1604 (1637)
.++|++... . |++|+||+|||||||+||.+.+++.++. +.+||++|++|+.....+ ..+.|.||||+
T Consensus 3137 ~~~~V~~~~~----~-p~~G~yI~GL~LeGA~WD~~~~~l~e~~----~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvYk 3207 (3245)
T 3vkg_A 3137 HASSLGKISS----E-GGASFNVKGMALEGAVWNNDQLTPTDIL----STPISIATLTWKDKDDPIFNNSSSKLSVPVYL 3207 (3245)
T ss_dssp CBC---------------CCEEECSCEEESCEECSSSEECCSSS----EEECCCEEECCCC---CCTTSGGGEEEEEEES
T ss_pred eeEEEecCCC----C-CCceEEEeCEEEeccEecCCCceecCcc----cCCCCceeEEEeecccccccCCCCeEEcceEe
Confidence 999985422 2 7899999999999999999988888765 467999999998754332 35689999999
Q ss_pred ccccCCcEEEEEecc--cCCCCcchhhhhhhhccC
Q psy2649 1605 TRQRGPNYVWTFNLK--TKEKPAKWTMAGVALLFM 1637 (1637)
Q Consensus 1605 ~~~R~~n~i~~~~l~--~~~~~~~wi~rGvAl~~~ 1637 (1637)
|+.|++ +++.++|| ++.+++|||+|||||+|+
T Consensus 3208 t~~R~~-~l~~~~l~~~t~~~~~~Wi~rGVALl~~ 3241 (3245)
T 3vkg_A 3208 NETRSE-LLFSIDLPYDQSTSKQNWYQRSVSISSW 3241 (3245)
T ss_dssp STTCCC-EEEEEEEEBCTTSCHHHHHTTTCEEESC
T ss_pred cCCCCC-EEEEEEEECCCCCCHhHHHHHHHHHHcC
Confidence 999984 56555555 578999999999999996
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=8.7e-199 Score=2090.58 Aligned_cols=1042 Identities=20% Similarity=0.359 Sum_probs=916.2
Q ss_pred cccccCCceeeecccCCCCCccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEee
Q psy2649 4 NEYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGV 83 (1637)
Q Consensus 4 ~~~~~~~~~f~~f~~~~~~~~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~ 83 (1637)
+.+..+|++||||++. .|++|++ ++++++++++|++||+++.+|+||+|++|++||+||+|||++|+||+||||+
T Consensus 1543 ~~~~~~~~~f~df~~~----~Y~~v~~-~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGv 1617 (2695)
T 4akg_A 1543 GNISSTSLLFSGLLSL----DFKEVNK-TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGA 1617 (2695)
T ss_dssp CCCSTTTCCEESSSSS----SCEECCH-HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECT
T ss_pred hhhccCCceeeecCCC----cceecCH-HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECC
Confidence 3456789999999873 6999965 8999999999999999988999999999999999999999999999999999
Q ss_pred cCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCC
Q psy2649 84 GGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVP 163 (1637)
Q Consensus 84 ~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp 163 (1637)
|||||+|||||||||+|+++|||.++++|+..+|++|||.+|++||++|+++||||+|+||++|+|||+||+||++||||
T Consensus 1618 gGsGkqSltrLaa~i~~~~~fqi~~~~~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP 1697 (2695)
T 4akg_A 1618 SRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIP 1697 (2695)
T ss_dssp TTSCHHHHHHHHHHHTTCEEECCCCCTTCCHHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCT
T ss_pred CCCcHHHHHHHHHHHhCCeeEEEEeeCCCCHHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhhcCCCccccCCCCccccc--chhhHHHHhhccC---C-CccccccCcceeEecccccccccC---
Q psy2649 164 DLFTDDEIENIVNNIAAEPEIPLTADLDPLTML--TDDATIAFWNNEG---L-PNDRMSTENATILVNSQRWPLMID--- 234 (1637)
Q Consensus 164 ~Lf~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~--s~~~~~~~f~~~v---L-~v~~~s~~~~~~~~~~~~~P~l~~--- 234 (1637)
|||+.||+++|++.+|+.++. .|.. +++++|+||++|| | ||+||||.|+.|+.|+++||+|+|
T Consensus 1698 ~LF~~dE~~~i~~~~r~~~~~--------~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn~ct 1769 (2695)
T 4akg_A 1698 DLFQGEEYDKLLNNLRNKTRS--------LGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRCI 1769 (2695)
T ss_dssp TTSCTHHHHHHHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHHHSE
T ss_pred CCCCHHHHHHHHHHhHHHHHh--------cCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhccee
Confidence 999999999999999988766 4542 7899999999999 8 999999999999999999999999
Q ss_pred -------hhhhhhchHH------------------------------------HHHHHHhhhHhhhhHHHhhccccc-cC
Q psy2649 235 -------PQEVLRKPCA------------------------------------VFMAYVHSSVNQISVSYLLNERRY-NY 270 (1637)
Q Consensus 235 -------p~~al~~~~~------------------------------------~~~~~~h~~~~~~~~~~~~~~~r~-~~ 270 (1637)
|++||..+.. ..|+.+|. .+.+..+|. +|
T Consensus 1770 IdWf~~Wp~eAL~~Va~~fl~~~~~~~~~y~tp~s~le~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~ 1842 (2695)
T 4akg_A 1770 INWMGDWDTKTMSQVANNMVDVIPMEFTDFIVPEVNKELVFTEPIQTIRDAVVNILIHFDR-------NFYQKMKVGVNP 1842 (2695)
T ss_dssp EEECCSCCHHHHHHHHHHHSCSCCCCCCCC----------------CHHHHHHHHHHHHHH-------HHHHHTCCSSSC
T ss_pred EeecCCCCHHHHHHHHHHHhhccCcccccccCchHHHHHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHhhhcccC
Confidence 7887543332 23333332 344445554 78
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHhhhchhhhhhHHHhHHhhhhhhhhhHHhhhhhcchHHHHHHHh
Q psy2649 271 TTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLGNEEKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQEAL 350 (1637)
Q Consensus 271 ~TP~~fl~~l~~f~~l~~~k~~~l~~~~~~l~~gL~kL~e~~~ee~k~~~~~~e~~~~~~~~~~~L~~a~P~l~~A~~al 350 (1637)
+||++|+++|++|.+++.+|+.+++++.+++..|++||+++ +.++++++++++
T Consensus 1843 ~~p~~fl~~l~~~~~~~~~k~~~l~~~~~~l~~~l~kL~e~---~~~v~~l~~~l~------------------------ 1895 (2695)
T 4akg_A 1843 RSPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNES---VLKVNELNKTLS------------------------ 1895 (2695)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-----------------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999766 222322222221
Q ss_pred hhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhhhccccCCcCcchhhhhhheeeeEEEEecchh
Q psy2649 351 DTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVINIITFYNVWTFVEPK 430 (1637)
Q Consensus 351 ~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k~~~i~~~a~~L~~WV~Ai~~Y~~v~~~v~P~ 430 (1637)
T Consensus 1896 -------------------------------------------------------------------------------- 1895 (2695)
T 4akg_A 1896 -------------------------------------------------------------------------------- 1895 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHH
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDS 510 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~ 510 (1637)
++|+++|++|+.||+++
T Consensus 1896 ---------------------------------------------------------------~~Li~~L~~E~~RW~~~ 1912 (2695)
T 4akg_A 1896 ---------------------------------------------------------------ISLVKSLTFEKERWLNT 1912 (2695)
T ss_dssp -------------------------------------------------------------------CTTHHHHHTTTHH
T ss_pred ---------------------------------------------------------------HHHHHhhhHHHHHHHHH
Confidence 78999999999999999
Q ss_pred HHHHhhccccCCcceeeehhhhhhhcchhhhHHHHhhhccccccccccCCC---------------cccccCCccccCcc
Q psy2649 511 VLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLDLLNKFWLPTIKKSKID---------------WFHEWPQEALESVS 575 (1637)
Q Consensus 511 ~~~l~~~~~~l~gd~lL~aa~i~Y~G~~~~~~R~~ll~~~w~~~l~~~~id---------------~~~~w~~~gLp~d~ 575 (1637)
+++++.+..+|+|||||||||++|+|||+.+||+.++.+ |...|++.+|. +++.|+.+|||+|+
T Consensus 1913 ~~~~~~~~~~l~Gd~ll~aafisY~G~f~~~~R~~l~~~-W~~~~~~~~ip~~~~~~~~~~L~~~~~i~~W~~~GLP~D~ 1991 (2695)
T 4akg_A 1913 TKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVI-LKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKND 1991 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHH-HHHHHHHTTCCCCSSCCHHHHHCCHHHHHHHHHHTCCSCH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHhcCCCCCCCCCHHHHhcCHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999998 99999988871 57899999999998
Q ss_pred ----ccceeecc-c----------------ccccCCceEEEEecccchhHHHHHHHhcCcEEEEecccccccchhhhhhh
Q psy2649 576 ----LKFLVKSC-E----------------SHRYGNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVLDNLIG 634 (1637)
Q Consensus 576 ----n~~i~~~~-~----------------~~~~~~~l~v~~~~~~~~~~~le~ai~~G~~lli~dv~e~~dp~L~~ll~ 634 (1637)
||+|+.++ . +++++++++|++++|++|+++||+||++|+|||||| +|.+||+|+|+|.
T Consensus 1992 ~s~eNaii~~~s~~r~PL~IDPq~qa~~wik~~~~~~l~v~~~~d~~f~~~lE~ai~~G~pvLien-~E~lDp~L~pvL~ 2070 (2695)
T 4akg_A 1992 YFLENMSIVMNSQDAVPFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAIRFGSVVIIQD-GEFFDPIISRLIS 2070 (2695)
T ss_dssp HHHHHHHHHHHCCSSEEEEECSSTTHHHHHHHHHGGGEEEECTTSSTHHHHHHHHHHTTCEEEESC-SSSCCSTTHHHHT
T ss_pred hhHhHHHHHhcccccCceEECcHHHHHHHHHHHhcCCceEeeCCcHHHHHHHHHHHHcCCeEEEcc-ccccchhHHHHHh
Confidence 99999886 3 344678899999999999999999999999999999 6899999999999
Q ss_pred hhhhcCc--ceeEecccccccCCCceeeeeecccCCCCCccccccceEEEEEecccchhHHHHHHHhhhcCCCHHHHhhh
Q psy2649 635 RNLIRKG--KVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKFERPDLELLKAN 712 (1637)
Q Consensus 635 ~~~~~~g--~~I~ig~~~i~~~p~F~L~l~T~~~~~~~~p~~~~~~~vInftvt~~~Le~qlL~~vv~~e~PeLe~~~~~ 712 (1637)
|+++++| .+|++||++|+|||+|||||+||++||||+||++++||+||||||++|||+|||+.||++|+||||++|.+
T Consensus 2071 k~~~k~gg~~~i~lGdk~idy~~~FrlyltTkl~np~y~Pei~~~vt~iNFtvT~~GLedQLL~~vv~~ErPdLE~~r~~ 2150 (2695)
T 4akg_A 2071 REFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKRED 2150 (2695)
T ss_dssp TCCEECSSCEEEECSSSEEECCSSCEEEEEECCTTCCCCHHHHHHEEEEECCCCSHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHhhhcCCeEEEEECCeeEecCCCceEEEeeCCCCCCCCHHHHhheeEEEEEEcHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 9999887 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccceeeeeccchhHHHHhhhccCCCccchhHHHhhhhhhhhhHHHHHHHhhhcchhHHHHHHHHhhcchhhhhhhH
Q psy2649 713 LTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIEIKVKEGKKTAKKIDEAREQYRPAAERASV 792 (1637)
Q Consensus 713 l~~~~~~~~~~l~~lE~~lL~~L~~s~g~iLed~~li~~L~~~K~~~~~i~~~l~e~~~~~~~i~~~r~~Y~pvA~~~a~ 792 (1637)
|+++.+++|++|++|||+||+.|++++|+||||++||++|+++|.++.+|+++++++++++++|+++|+.|||+|.|||.
T Consensus 2151 Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~~I~~~R~~YrpvA~r~s~ 2230 (2695)
T 4akg_A 2151 LIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVK 2230 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCccccccchhhHHHHHHHh-hhcccccchHHHHhhhhhceeeeeeeeecccccccchhhhhhhheeeee
Q psy2649 793 IYFIMNELFKINPIYQFSLKAFTVVFHNAM-TKAKKSDNLKGRVANLVESITFMTFQYTSRGLFERDKLIFMAQMTIQVK 871 (1637)
Q Consensus 793 ly~~l~~l~~l~~mYqfSl~~f~~lf~~~l-~~~~~~~~~~~r~~~L~~~lt~~~y~~v~r~Lf~~d~l~f~~~l~~~i~ 871 (1637)
|||++++|+.|||||||||.||+++|..+| +++++++++++|+++|++++|+.+|.+||||||++|||+|+|+||+++.
T Consensus 2231 LyF~i~dL~~i~~mYq~SL~~F~~lF~~~i~~~s~~~~~~~~R~~~l~~~~t~~vy~~v~r~Lfe~dkl~fs~~l~~~i~ 2310 (2695)
T 4akg_A 2231 IFSMLEKFGQFHWFYGISIGQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMTMFCLYK 2310 (2695)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchhhCCHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8899999999999999999999999999999999999999999998771
Q ss_pred ccccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc-cchhhccCCCCCCCCcccccccccc
Q psy2649 872 SLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREE-LDFLLRFPFQPGVSSPVDFLTNTLW 950 (1637)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~l~~~~~~~~~~~~~wl~~~~w 950 (1637)
...+.++.+| +.+++++... . ++.++|+....
T Consensus 2311 --------------------------------------------~~~~~~~~~e~~~~~l~~~~~-~-~~~~~~~~~~~- 2343 (2695)
T 4akg_A 2311 --------------------------------------------FDIESEQYKEAVLTMIGVLSE-S-SDGVPKLTVDT- 2343 (2695)
T ss_dssp --------------------------------------------HHHSCHHHHHHHHHHHHHHSS-S-CCCCCCCCTTT-
T ss_pred --------------------------------------------hhcCCCchHHHHHHHHhcccc-C-CCCcccccccc-
Confidence 1122222223 4555543211 1 11112221111
Q ss_pred cccccccchhhhhccchhhHHHHHHHHhhhhcCCCCcCCCchhhccchHHHHHHHhhhcCCCchhHHHHHHHHHhhcCcc
Q psy2649 951 GGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQEWKNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRY 1030 (1637)
Q Consensus 951 ~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~lp~~~~~l~~fqklll~r~lrpdrl~~~~~~~v~~~lg~~~ 1030 (1637)
...|+++ ++++|||++..++ +|+...++
T Consensus 2344 ----------------------------------------------~~~~~~l--~~~~~~~~~~~~~-~~~~~~~~--- 2371 (2695)
T 4akg_A 2344 ----------------------------------------------NNDLRYL--WDYVTTKSYISAL-NWFKNEFF--- 2371 (2695)
T ss_dssp ----------------------------------------------CSHHHHH--HHHHHTTCHHHHH-HHHHHTTC---
T ss_pred ----------------------------------------------hHHHHHH--HHHhcccHHHHHH-HHHHhccC---
Confidence 1234543 6777888776554 56654333
Q ss_pred ccccccchhhhhhccCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCchhH-HHHhHHHhhhccCCEEE
Q psy2649 1031 VNARAIEFEQSYRESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEV-IAEETIQIASTKGHWAI 1109 (1637)
Q Consensus 1031 ~~~~~~~l~~~~~~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~~-~a~~~l~~a~~~G~Wvl 1109 (1637)
++++||+.. .+|++.+|+||++|||+||+..|.++|++++ .+++.|||||||+. .|+++|++|+++|+||+
T Consensus 2372 --~~~~~l~~~-~~s~~~~PlifilspG~DP~~~l~~la~~~~-----~~~~~iSlGqgq~~~~A~~~i~~a~~~G~Wv~ 2443 (2695)
T 4akg_A 2372 --VDEWNIADV-VANSDNNYFTMASERDVDGTFKLIELAKASK-----ESLKIIPLGSIENLNYAQEEISKSKIEGGWIL 2443 (2695)
T ss_dssp --CCCCCHHHH-HHHCCCSEEEEEECTTCCTHHHHHHHHHTTT-----CCCCEEECCSHHHHHHHHHHHHHHHHHTCCEE
T ss_pred --CCcccHHHH-HhcCCCCeEEeeCCCCCCchHHHHHHHHHhC-----CCcEEEecCCCccHHHHHHHHHHHHHcCCeEE
Confidence 577999885 4678899999999999999999999999986 58999999999985 99999999999999999
Q ss_pred EehhhhHHhhhhcH-HHHHHhh-hcCCCCceeEEEecC-CCCCCCccccccccccccccccCCCCchhhhhHHHHhhcCC
Q psy2649 1110 LQNVHLVKNWLPTL-DKKMEAS-FEKPHKNYRLFISAE-PASDPEYHIIPQGVLDSSIKITNEPPTGMQANLHKALDNFT 1186 (1637)
Q Consensus 1110 L~N~HL~~~wl~~L-e~~l~~~-~~~~h~~FRLwLts~-~~~~~~~~~fP~~lLq~s~kv~~E~p~glk~~l~~~~~~~~ 1186 (1637)
||||||+++||+.| |++++.. ..++|++|||||||+ |++. ||++|||+|+||++|||+|+|+||+|+|.
T Consensus 2444 LqN~HL~~swl~~Llek~~e~~~~~~~h~~FRLwlts~~~~~~-----fP~~iLq~s~K~t~EpP~Glkanl~r~~~--- 2515 (2695)
T 4akg_A 2444 LQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDK-----LPAPLLQRTDRFVYEDIPGILDTVKDLWG--- 2515 (2695)
T ss_dssp EETGGGGHHHHHHTHHHHHHHCSSTTTSCSCCEEEECCSSSCC-----CCHHHHHHSEEEEECCCCCHHHHHHHHHH---
T ss_pred eecccccHHHHHHHHHHHHhcccccCCCCCceEEEeccCCcCc-----CCHHHHhccceeeecCChhHHHHHHHHhh---
Confidence 99999999999999 9999863 357899999999999 8875 99999999999999999999999999994
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHHHhhhhhhccCCCCCCCcccccCCcceEeehhhHHHhhhc--CCCCcchhhHHHhhh
Q psy2649 1187 QEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEAN--NNVPWEDLRYLFGEI 1264 (1637)
Q Consensus 1187 ~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~plGw~~~Y~f~~~Dl~~~~~~l~~~l~~~--~~ipw~al~~li~ei 1264 (1637)
++.+..|.++.+|++++|+|||||||++|||+|||+|||++|+||++||.+|.++|++|++.+ +.+||++|||++|+|
T Consensus 2516 ~~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~ipw~~l~yl~ge~ 2595 (2695)
T 4akg_A 2516 SQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHIATI 2595 (2695)
T ss_dssp HGGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHHHHHHHHHHHHHHHHSCSCSGGGHHHHHHHHHT
T ss_pred hHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 445677778889999999999999999999999999999999999999999999999999987 789999999999999
Q ss_pred ccCCCCCChhhhHHHHHHHHHhcCcccccccccccCCCCCCCC-------CCccccccccccC--CCCCCCcccccCCCc
Q psy2649 1265 MYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAPGFPAPPN-------QDYQGYHTYIDES--LPPESPILYGLHPNA 1335 (1637)
Q Consensus 1265 ~YGGrv~d~~Drr~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~i~~l--~~~~~p~~~gl~~na 1335 (1637)
+|||||||+||||+|++|+++||+| ++++.+.+++.+|.+ .++++|.+||+++ |..++|++||||+||
T Consensus 2596 ~YGGrvtd~~Drr~l~t~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~y~~~i~~l~~P~~~~p~~fGlh~NA 2672 (2695)
T 4akg_A 2596 VYGGKIDEEKDLEVVAKLCAHVFCG---SDNLQIVPGVRIPQPLLQQSEEEERARLTAILSNTIEPADSLSSWLQLPRES 2672 (2695)
T ss_dssp TSTTTCCSHHHHHHHHHHHHHHTCC---SSBCCSSSSCCCBCCCTTCCHHHHHHHHHHHHHHCCCCTTHHHHTSSSCHHH
T ss_pred hcCCccCCHHHHHHHHHHHHHHcCC---CCCcccCCCcCcCCCCccCCCCCCHHHHHHHHHhcCCCCCCChhhcCCChhH
Confidence 9999999999999999999999999 566777776554321 2688999999999 778899999999999
Q ss_pred cccchhhhhHHHHHHHHhcc
Q psy2649 1336 EIGFLTTQAENVFKIIFELQ 1355 (1637)
Q Consensus 1336 ~~~~~~~~~~~~~~~l~~~~ 1355 (1637)
++++++++++.+++++++++
T Consensus 2673 ~i~~~~~~~~~~~~~il~i~ 2692 (2695)
T 4akg_A 2673 ILNYERLQAKEVASSTEQLL 2692 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875
No 3
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=99.83 E-value=2.5e-23 Score=217.32 Aligned_cols=106 Identities=38% Similarity=0.603 Sum_probs=91.7
Q ss_pred hhHHhhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCC-------CcCccchhh----
Q psy2649 331 VCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVP-------KDLGWKGSQ---- 399 (1637)
Q Consensus 331 ~~~~~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~-------~~~~W~~~k---- 399 (1637)
+|+++|++|+|+|++|++||++|+++||+|||||++||++|+.||+|||+|+|.++.+.. .+++|.+++
T Consensus 1 ~ae~dL~~A~PaL~~A~~al~~l~k~di~Eiks~~~PP~~V~~vmeaV~iLl~~~~~~~~~~~~g~~~~~~W~~~k~~l~ 80 (155)
T 2rr7_A 1 GSQADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTASGRMVDDYWEASKKMLM 80 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSSSCCTTHHHHHHHHHTTTTCCCCCEECTTTCSEECCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCCcHHHHHHHHHHHHHcCCCCcccCCCccccccCCCHHHHHHHhc
Confidence 489999999999999999999999999999999999999999999999999997643221 135798876
Q ss_pred -------------------------------------hccccCCcCcchhhhhhheeeeEEEEecchhHHHHHH
Q psy2649 400 -------------------------------------LKALKAPPQGLCAWVINIITFYNVWTFVEPKRKALAA 436 (1637)
Q Consensus 400 -------------------------------------~~~i~~~a~~L~~WV~Ai~~Y~~v~~~v~P~~~~l~~ 436 (1637)
++++|.||+|||+||+||+.|+.|+++|+|+|+++++
T Consensus 81 ~~~Fl~~L~~fdkd~I~~~~~~~l~~yl~~p~f~~e~v~~~S~Aa~~Lc~WV~A~~~y~~v~k~V~Pkr~~l~~ 154 (155)
T 2rr7_A 81 EFDFLDSLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEVEPKRQKLRE 154 (155)
T ss_dssp CSSHHHHHHHSCGGGCCHHHHTTSTTTSSCTTSSHHHHHHHCTTTHHHHHHHHHHHHHHHHTTSSSCCCSSSSC
T ss_pred hHHHHHHHHhcCcccChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 2233456889999999999999999999999987754
No 4
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.82 E-value=8.3e-22 Score=244.32 Aligned_cols=132 Identities=26% Similarity=0.477 Sum_probs=115.7
Q ss_pred hhhHHHhHHhhhhhhhhhHHhhhhhcchHHHHHHHhhhhccCChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCc
Q psy2649 315 EKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLG 394 (1637)
Q Consensus 315 e~k~~~~~~e~~~~~~~~~~~L~~a~P~l~~A~~al~~l~k~dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~ 394 (1637)
++++++++++++++|++|+++|++|+|+|++|++||++|+|+||+|||||++||++|+.||+|||+|+|.+ +++
T Consensus 34 ~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k~di~Elks~~~PP~~V~~vmeaV~iLl~~~------~~~ 107 (536)
T 3err_A 34 DEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGES------TTD 107 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCS------CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCC------CCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999983 456
Q ss_pred cchhh------------------------------------------hccccCCcCcchhhhhhheeeeEEEEecchhHH
Q psy2649 395 WKGSQ------------------------------------------LKALKAPPQGLCAWVINIITFYNVWTFVEPKRK 432 (1637)
Q Consensus 395 W~~~k------------------------------------------~~~i~~~a~~L~~WV~Ai~~Y~~v~~~v~P~~~ 432 (1637)
|.++| ++++|.||+|||+||+||++|+.+.++|+|+++
T Consensus 108 W~~ak~~L~~~~Fl~~L~~fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~ 187 (536)
T 3err_A 108 WKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRN 187 (536)
T ss_dssp HHHHTTGGGCTTHHHHHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCcHHHHHHHHhcCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHH
Confidence 66655 334456688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2649 433 ALAAANAELAAASQKLAELK 452 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~ 452 (1637)
+++++++++.+++++|.+..
T Consensus 188 eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 188 ELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99888888777777765443
No 5
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.72 E-value=0.00099 Score=71.27 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEecccc----CcchhhhHHHHHHHHhhcccccEEEE
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNY----GIPDLKIDLASLYLKAGLKNAGIMFL 138 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y----~~~~f~~dLk~~~~~ag~~~~~~v~l 138 (1637)
...+|++|+|++|+||+++++-.+... +..++.+....-. ....+.+.++.++..+.-.+++.+++
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMF 120 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEE
Confidence 356789999999999999988777654 6667766543211 12345556777777665556788999
Q ss_pred eccccccc
Q psy2649 139 MTDSQVAD 146 (1637)
Q Consensus 139 ~~d~~i~~ 146 (1637)
++|-+-..
T Consensus 121 iDe~~~l~ 128 (187)
T 2p65_A 121 IDEIHTVV 128 (187)
T ss_dssp ETTGGGGS
T ss_pred EeCHHHhc
Confidence 99876543
No 6
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.68 E-value=0.0016 Score=69.91 Aligned_cols=73 Identities=11% Similarity=0.168 Sum_probs=50.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEecccc----CcchhhhHHHHHHHHhhcccccEEEE
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNY----GIPDLKIDLASLYLKAGLKNAGIMFL 138 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y----~~~~f~~dLk~~~~~ag~~~~~~v~l 138 (1637)
...+|++|+|++|+||+++++-.+... +..++.+....-. ...++...++.++..+.-.+.+++++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEE
Confidence 345889999999999999987766653 5667766543221 12345556777776655456788999
Q ss_pred ecccccc
Q psy2649 139 MTDSQVA 145 (1637)
Q Consensus 139 ~~d~~i~ 145 (1637)
++|-+-.
T Consensus 121 iDe~~~l 127 (195)
T 1jbk_A 121 IDELHTM 127 (195)
T ss_dssp EETGGGG
T ss_pred EeCHHHH
Confidence 9987655
No 7
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.65 E-value=0.001 Score=76.45 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=59.5
Q ss_pred hhhhhhhhhhhhh----hhhhh----cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccc---cCcchhhhHHH
Q psy2649 54 LVLFEDAMSHICR----INRIM----EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKN---YGIPDLKIDLA 122 (1637)
Q Consensus 54 lvlf~~~i~hi~r----i~RvL----~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~---y~~~~f~~dLk 122 (1637)
++-+..+++++.. +.+.+ ..+.+++||.|++|+||+++++..|...++.++.+..... +........++
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~ 114 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMK 114 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHH
Confidence 3444445555554 34444 5677899999999999999999999999999888865432 22234446677
Q ss_pred HHHHHhhcccccEEEEeccc
Q psy2649 123 SLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 123 ~~~~~ag~~~~~~v~l~~d~ 142 (1637)
.++..+. .+.+.+++++|-
T Consensus 115 ~~~~~~~-~~~~~vl~iDEi 133 (272)
T 1d2n_A 115 KIFDDAY-KSQLSCVVVDDI 133 (272)
T ss_dssp HHHHHHH-TSSEEEEEECCH
T ss_pred HHHHHHH-hcCCcEEEEECh
Confidence 7777663 355667766664
No 8
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.21 E-value=0.0046 Score=70.35 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=50.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
.+..++||.|++|+||+++++..|.-.+..++.+..+.-.+ ...-...++.++..+. .+.+.+++++|-+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR-ARAPCIVYIDEIDAV 110 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH-HTCSEEEEEECC---
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH-hcCCeEEEEeCcchh
Confidence 34567999999999999999999999999988876543211 1223355677777664 345788888885543
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.015 Score=69.64 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=71.2
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|.+|.-.++..+.|.+.+.- + +.|=-...+.=..|...+||.|++|||||+++|-.|.-+++.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~--------P-------l~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIEL--------P-------VKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHH--------H-------HHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CHHHhCCHHHHHHHHHHHHHH--------H-------HhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 578887778887777654432 1 1111122233234556699999999999999999999999999
Q ss_pred eEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 104 FQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 104 ~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
+.+..+.-.+ +.+-..-++.++..| -...|++++|+|-+
T Consensus 211 ~~v~~s~l~sk~vGese~~vr~lF~~A-r~~aP~IIFiDEiD 251 (405)
T 4b4t_J 211 IRVSGAELVQKYIGEGSRMVRELFVMA-REHAPSIIFMDEID 251 (405)
T ss_dssp EEEEGGGGSCSSTTHHHHHHHHHHHHH-HHTCSEEEEEESSS
T ss_pred eEEEhHHhhccccchHHHHHHHHHHHH-HHhCCceEeeecch
Confidence 9987553222 123445688888887 45678888877744
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.96 E-value=0.0052 Score=67.51 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=46.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhc-----cccceEEEeccccCcchhhhHHHHHHHHhhc-ccccEEEEecccccccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIS-----TLEPFQIQLKKNYGIPDLKIDLASLYLKAGL-KNAGIMFLMTDSQVADE 147 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~-~~~~~v~l~~d~~i~~~ 147 (1637)
.+|++|.|++|+||+++++..+.-. +..++.+..+...+.....+.++......+. .+++.+++++|-+-..+
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH
Confidence 4579999999999999987766543 2345555544444433444444444433322 36778888888766543
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.96 E-value=0.0069 Score=74.59 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=60.7
Q ss_pred hhhhhhhcCCC-CceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 65 CRINRIMEAPR-GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 65 ~ri~RvL~~p~-gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..+.+.+...+ .++||.|++|+||++++|..+...+..++.+.... .+..+.++-+..+.... ..+++.+++++|-+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~~~~-~~~~~~iLfIDEI~ 116 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERARQNR-NAGRRTILFVDEVH 116 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHHHHH-HTTCCEEEEEETTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHHHhh-hcCCCcEEEEeChh
Confidence 44555555544 47899999999999999999999999998886432 23334333333332222 35678899999987
Q ss_pred ccccceeeeehhhhccCCC
Q psy2649 144 VADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 144 i~~~~fle~in~lL~~gev 162 (1637)
-......+.+...|..|.+
T Consensus 117 ~l~~~~q~~LL~~le~~~v 135 (447)
T 3pvs_A 117 RFNKSQQDAFLPHIEDGTI 135 (447)
T ss_dssp CC------CCHHHHHTTSC
T ss_pred hhCHHHHHHHHHHHhcCce
Confidence 6665555555555555554
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.90 E-value=0.0063 Score=70.29 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=51.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
.+..++||.|++|+||++++|..|...+..++.+....-.+ ..+....++.++..+ ..+.+.+++++|-+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDEid 120 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLA-KEKAPSIIFIDEID 120 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHH-HHTCSEEEEEETTH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHH-HHcCCeEEEEECHH
Confidence 45677999999999999999999999999998886543222 234455566666666 34566788877744
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.025 Score=68.72 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=70.7
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|.+|.-.++..+.|.+.+.-. +.|=-...+.=..|...+||.|++|||||+++|-.|.-+++.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~p---------------l~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELP---------------LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHH---------------HHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ChhHhCChHHHHHHHHHHHHHH---------------HhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 5888877777777776554421 1111122222234667799999999999999999999999999
Q ss_pred eEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 104 FQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 104 ~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+.+..+.-.+ ..+=...++.++..| -...|++++++|-+.
T Consensus 244 ~~v~~s~l~sk~~Gese~~ir~~F~~A-~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 244 IFSPASGIVDKYIGESARIIREMFAYA-KEHEPCIIFMDEVDA 285 (437)
T ss_dssp EEEEGGGTCCSSSSHHHHHHHHHHHHH-HHSCSEEEEEECCCS
T ss_pred EEEehhhhccccchHHHHHHHHHHHHH-HhcCCceeeeecccc
Confidence 9987553222 122234577777777 467788888877543
No 14
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.72 E-value=0.007 Score=75.22 Aligned_cols=82 Identities=11% Similarity=0.194 Sum_probs=52.1
Q ss_pred hhhhhhhhhhhhhhhhhhc-CCCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEeccccCcchhhhHHH
Q psy2649 54 LVLFEDAMSHICRINRIME-APRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNYGIPDLKIDLA 122 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~-~p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y~~~~f~~dLk 122 (1637)
+|=-++.+..+. ++|. ...+|+||+|++|+||+++++-.|... +..++.++.+ .+...+|.+.++
T Consensus 182 iiGr~~~i~~l~---~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-~~~~g~~e~~~~ 257 (468)
T 3pxg_A 182 VIGRSKEIQRVI---EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-TKYRGEFEDRLK 257 (468)
T ss_dssp CCCCHHHHHHHH---HHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHH
T ss_pred ccCcHHHHHHHH---HHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-ccccchHHHHHH
Confidence 344444444433 3443 456899999999999999999877664 7888888877 333467888899
Q ss_pred HHHHHhhcccccEEEEec
Q psy2649 123 SLYLKAGLKNAGIMFLMT 140 (1637)
Q Consensus 123 ~~~~~ag~~~~~~v~l~~ 140 (1637)
.++..+.- ..+++++++
T Consensus 258 ~~~~~~~~-~~~~iLfiD 274 (468)
T 3pxg_A 258 KVMDEIRQ-AGNIILFID 274 (468)
T ss_dssp HHHHHHHT-CCCCEEEEC
T ss_pred HHHHHHHh-cCCeEEEEe
Confidence 98887743 456666666
No 15
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.71 E-value=0.012 Score=78.80 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=61.2
Q ss_pred hhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEecccc----CcchhhhHHHHHHHHh
Q psy2649 64 ICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNY----GIPDLKIDLASLYLKA 128 (1637)
Q Consensus 64 i~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y----~~~~f~~dLk~~~~~a 128 (1637)
+.++.++|.. ...|++|+|++|+||+++++-.|... +..++.++.+.-. ...+|.+.++.++..+
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV 258 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH
Confidence 3344445544 56789999999999999998888765 7788877644321 1247888899998888
Q ss_pred hcccccEEEEeccccccc--------cceeeeehhhhccCCCC
Q psy2649 129 GLKNAGIMFLMTDSQVAD--------EKFLVIINDMLASGEVP 163 (1637)
Q Consensus 129 g~~~~~~v~l~~d~~i~~--------~~fle~in~lL~~gevp 163 (1637)
.-.+.+++++++|-+-.. ......++.+|..|++.
T Consensus 259 ~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~ 301 (854)
T 1qvr_A 259 VQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELR 301 (854)
T ss_dssp HTTCSSEEEEECCC-------------------HHHHHTTCCC
T ss_pred HhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeE
Confidence 655678888888876543 22233345555555544
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.69 E-value=0.012 Score=66.72 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
..+++|+|++||||++++|..|...+..++.+....-.+ .......++.++..|. .+.+.+++++|-
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~il~iDei 113 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK-KAAPCIIFIDEI 113 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH-TTCSEEEEETTH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH-HcCCeeehhhhh
Confidence 345999999999999999999999888887775332111 1233455777777773 455667777664
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.68 E-value=0.0083 Score=71.17 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=62.2
Q ss_pred hhhhhhhhhhhhhhhhh---cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcc
Q psy2649 55 VLFEDAMSHICRINRIM---EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLK 131 (1637)
Q Consensus 55 vlf~~~i~hi~ri~RvL---~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~ 131 (1637)
+--+.+++.+.+..+.. ..+.+|+||.|++|+||+++++..|...+..++.+.....- -..+++.++...
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--- 104 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----KSGDLAAILTNL--- 104 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----SHHHHHHHHHTC---
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----chhHHHHHHHhc---
Confidence 33344444444333333 34568999999999999999999999999998877654322 233455555442
Q ss_pred cccEEEEeccccccccceeeeehhhhccCCC
Q psy2649 132 NAGIMFLMTDSQVADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 132 ~~~~v~l~~d~~i~~~~fle~in~lL~~gev 162 (1637)
..+.+++++|-+-..+...+.+...|..+.+
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~ 135 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRL 135 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccc
Confidence 3567788888665544444434444444443
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.58 E-value=0.017 Score=67.05 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=52.4
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
..|..++||.|++||||++++|..|...++.++.+..+.-.+ ..+....++.++..+. ...+.+++++|-+-
T Consensus 51 ~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR-HMQPSIIFIDEVDS 124 (297)
T ss_dssp GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH-HTCSEEEEEETGGG
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH-HcCCcEEEeccHHH
Confidence 467889999999999999999999999999988887543221 2234455666666553 45677777777543
No 19
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.031 Score=67.09 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=70.8
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|.+|.-.++..+.|.+.+.-.- .|=-...+.=..|...+||.|++|||||+++|-.|.-+++.+
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl---------------~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPL---------------THPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHH---------------HCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred cceecCcHHHHHHHHHHHHHHHH---------------hCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 58888888888887776554311 111111222234556699999999999999999999999999
Q ss_pred eEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 104 FQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 104 ~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
+.+..+.-.+ +.+-..-++.++..| -...|++++++|-+
T Consensus 245 i~v~~s~l~sk~vGesek~ir~lF~~A-r~~aP~IIfiDEiD 285 (437)
T 4b4t_I 245 LRIVGSELIQKYLGDGPRLCRQIFKVA-GENAPSIVFIDEID 285 (437)
T ss_dssp EEEESGGGCCSSSSHHHHHHHHHHHHH-HHTCSEEEEEEEES
T ss_pred EEEEHHHhhhccCchHHHHHHHHHHHH-HhcCCcEEEEehhh
Confidence 9987543221 123344577888777 45778888877754
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.49 E-value=0.015 Score=68.49 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=53.1
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..|..++||.|++||||++++|-.|...+..++.+..+.-.+ ..+....++.++..|. ...+.+++++|-+
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid 120 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR-ENKPSIIFIDQVD 120 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH-HTSSEEEEEECGG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHH-hcCCeEEEechhh
Confidence 457789999999999999999999999999999887542111 2345556777777763 4567777777754
No 21
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.03 Score=67.96 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=70.5
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|..|.-.++..+.|.+.+.-+ +.|=-...+.=..|...+||.|++|||||+++|-.|.-+++.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~p---------------l~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLP---------------MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHH---------------HHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred ChHhcCcHHHHHHHHHHHHHHH---------------HhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 5888888888877776544321 1111122233334667799999999999999999999999999
Q ss_pred eEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 104 FQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 104 ~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
+.+..+.=.+ +.+-..-++.++..| -...|++++++|-+
T Consensus 244 ~~v~~s~l~~~~vGese~~ir~lF~~A-~~~aP~IifiDEiD 284 (434)
T 4b4t_M 244 LKLAAPQLVQMYIGEGAKLVRDAFALA-KEKAPTIIFIDELD 284 (434)
T ss_dssp EEEEGGGGCSSCSSHHHHHHHHHHHHH-HHHCSEEEEEECTH
T ss_pred EEEehhhhhhcccchHHHHHHHHHHHH-HhcCCeEEeecchh
Confidence 9987543221 123345577887777 45678888877743
No 22
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.035 Score=67.40 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=69.8
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|.+|.-.+...+.|.+.+.-+-. +.+.. .+.=..|...+||.|++|||||+++|-.|.-+++.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~---------~p~~~------~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLV---------QADLY------EQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHH---------CHHHH------HHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHh---------CHHHH------HhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 588888888888887766553211 11111 111113444589999999999999999999999999
Q ss_pred eEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 104 FQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 104 ~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
+.+..+.-.+ +.+-..-++.++..| -...|++++++|-
T Consensus 235 ~~v~~~~l~~~~~Ge~e~~ir~lF~~A-~~~aP~IifiDEi 274 (428)
T 4b4t_K 235 IRVNGSEFVHKYLGEGPRMVRDVFRLA-RENAPSIIFIDEV 274 (428)
T ss_dssp EEEEGGGTCCSSCSHHHHHHHHHHHHH-HHTCSEEEEEECT
T ss_pred EEEecchhhccccchhHHHHHHHHHHH-HHcCCCeeechhh
Confidence 9997654322 123345588888877 4567888877664
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.44 E-value=0.019 Score=68.68 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=53.0
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
+..+..++||.|++||||++++|..|...++.++.+..+.-.+ ..+....++.++..+. ...+.+++++|-+
T Consensus 113 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~-~~~~~vl~iDEid 186 (357)
T 3d8b_A 113 LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR-CQQPAVIFIDEID 186 (357)
T ss_dssp GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH-HTCSEEEEEETHH
T ss_pred ccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHH-hcCCeEEEEeCch
Confidence 3456788999999999999999999999999999887653322 2345556777776663 4566777777643
No 24
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.43 E-value=0.011 Score=68.96 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=44.2
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccc-------cceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTL-------EPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~-------~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
..|.+|+||.|++||||+++++..|...+. .++.+....-.+ .......++.++..+ ++.+++++|-
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~----~~~vl~iDEi 139 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA----MGGVLFIDEA 139 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH----TTSEEEEETG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc----CCCEEEEECh
Confidence 456778999999999999999877766533 566554332111 122234566777666 2457777775
Q ss_pred cc
Q psy2649 143 QV 144 (1637)
Q Consensus 143 ~i 144 (1637)
+-
T Consensus 140 d~ 141 (309)
T 3syl_A 140 YY 141 (309)
T ss_dssp GG
T ss_pred hh
Confidence 53
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.42 E-value=0.015 Score=70.40 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=51.9
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
+..|..|+||.|++|+||++++|..|...+..++.+..+.-.+ ..++...++.++..|. ...+.+++++|-+
T Consensus 144 ~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-~~~~~il~iDEid 217 (389)
T 3vfd_A 144 LRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR-ELQPSIIFIDQVD 217 (389)
T ss_dssp GGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHH-HSSSEEEEEETGG
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHH-hcCCeEEEEECch
Confidence 3467789999999999999999999999999999887543222 2345556777777663 3456677777754
No 26
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.26 E-value=0.016 Score=69.45 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=32.6
Q ss_pred hhhhhhhhhhhhhhhhhcC---CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 55 VLFEDAMSHICRINRIMEA---PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 55 vlf~~~i~hi~ri~RvL~~---p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
|--+.+...+..+.+.+.. |+.++||.|++|+||++++|..|...+++
T Consensus 47 vG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 47 VGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred cChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3334444444444444443 44589999999999999999888877763
No 27
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.037 Score=67.08 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=70.3
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|.+|.-.++..+.|.+.+.-.- .+.+. ..+.=..|...+||.|++|||||+++|-.|.-+++.+
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl---------~~pe~------f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPL---------LSPER------FATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHH---------HCHHH------HHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHh---------cCHHH------HHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 47777777887777765543211 11111 1121124666799999999999999999999999999
Q ss_pred eEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 104 FQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 104 ~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+.+..+.-.+ +.+-...++.++..| -...|++++++|-+.
T Consensus 272 i~vs~s~L~sk~vGesek~ir~lF~~A-r~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 272 IRVIGSELVQKYVGEGARMVRELFEMA-RTKKACIIFFDEIDA 313 (467)
T ss_dssp EEEEGGGGCCCSSSHHHHHHHHHHHHH-HHTCSEEEEEECCTT
T ss_pred EEEEhHHhhcccCCHHHHHHHHHHHHH-HhcCCceEeeccccc
Confidence 9887543221 123345688888777 457788888877543
No 28
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.18 E-value=0.0085 Score=79.47 Aligned_cols=106 Identities=14% Similarity=0.233 Sum_probs=70.9
Q ss_pred hhhhhhhhhhhhhhhhhhhc-------CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC---cch------
Q psy2649 53 NLVLFEDAMSHICRINRIME-------APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG---IPD------ 116 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL~-------~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~---~~~------ 116 (1637)
+++-.++++.++.+..+..+ .|.||+||+|++|+||++++|..|...+..++.++++.-.. +..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~ 538 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCS
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCC
Confidence 35566778888877666554 57889999999999999999999999898888887653211 111
Q ss_pred -h-----hhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCC
Q psy2649 117 -L-----KIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 117 -f-----~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gev 162 (1637)
+ ...+...+.++ ...|++++|-+-..+..+..+..+|..|.+
T Consensus 539 g~~g~~~~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~ 586 (758)
T 1r6b_X 539 GYVGFDQGGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNGTL 586 (758)
T ss_dssp CSHHHHHTTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEE
T ss_pred CCcCccccchHHHHHHhC----CCcEEEEeCccccCHHHHHHHHHHhcCcEE
Confidence 1 11234444443 357888888765555555555555555544
No 29
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.16 E-value=0.037 Score=63.42 Aligned_cols=104 Identities=15% Similarity=0.247 Sum_probs=61.0
Q ss_pred ccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 24 KYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 24 ~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.|.+|.-.+++++.|.+.+...-.. .+++.++. +..|.| ++|+|++||||+||+|..|...+..+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~---------~~~l~~~~-----l~~~~G-vlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRN---------PDQFKALG-----LVTPAG-VLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHS---------HHHHHHTT-----CCCCSE-EEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhC---------HHHHHHcC-----CCCCCe-EEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 4666766677777666544321111 11222111 455777 99999999999999999999998877
Q ss_pred eEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 104 FQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 104 ~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
+.+....-.+ ..+....++.++..|. ...+.+.++++-+
T Consensus 73 i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~~~Deid 113 (274)
T 2x8a_A 73 ISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVIFFDEVD 113 (274)
T ss_dssp EEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEEEEETCT
T ss_pred EEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeEeeehhh
Confidence 7665332111 2334455777777762 2345666665543
No 30
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.12 E-value=0.016 Score=59.50 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=49.7
Q ss_pred hhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHHHHHHHHhhcccccE
Q psy2649 59 DAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGI 135 (1637)
Q Consensus 59 ~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~ 135 (1637)
.++..+.+..+.+.....|+||.|.+||||++++|..+... +..++ ++...-.+. .+++..+..|. +.
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----~~~~~~~~~a~----~g 78 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----PQLNDFIALAQ----GG 78 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----SCHHHHHHHHT----TS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----hhhhcHHHHcC----Cc
Confidence 44455555444456677899999999999999999988876 56677 765543222 34556665552 23
Q ss_pred EEEecccc
Q psy2649 136 MFLMTDSQ 143 (1637)
Q Consensus 136 v~l~~d~~ 143 (1637)
+++++|-+
T Consensus 79 ~l~ldei~ 86 (145)
T 3n70_A 79 TLVLSHPE 86 (145)
T ss_dssp CEEEECGG
T ss_pred EEEEcChH
Confidence 45555543
No 31
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.10 E-value=0.11 Score=76.85 Aligned_cols=118 Identities=13% Similarity=0.158 Sum_probs=66.9
Q ss_pred cCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCchhHHHHhHHHhhhccCCEEEEehh-hhHHhhhhcH
Q psy2649 1045 SSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETIQIASTKGHWAILQNV-HLVKNWLPTL 1123 (1637)
Q Consensus 1045 s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~~~a~~~l~~a~~~G~WvlL~N~-HL~~~wl~~L 1123 (1637)
.+..-|+++ ||..+..++.+.+.. ..++.++++++. .-.+.|+.|++-|..|+|+|+ ++-|..-|.|
T Consensus 2182 ~~~R~PLlI------DPq~Qa~~WIk~~~~---~~~l~v~~~~d~---~f~~~LE~ai~fG~pvLienvE~lDP~L~pvL 2249 (3245)
T 3vkg_A 2182 RFNRYPLVI------DPSGQAMEFLMNQYA---DKKITKTSFLDS---SFMKNLESALRFGCPLLVQDVENIDPVLNPVL 2249 (3245)
T ss_dssp SCSSCEEEE------CTTSHHHHHHHHHTG---GGCCCCCCC--------HHHHHHHHHHTCCEECCCCC----------
T ss_pred cCCCceEEE------ChHHHHHHHHHHHhc---cCCceEeecCch---hHHHHHHHHHHcCCeEEEccccccchhHHHHH
Confidence 345679877 999999999887642 246788888754 346789999999999999999 2333333444
Q ss_pred HHHHHhh-----------hcCCCCceeEEEecC-CCCCCCccccccccccccccccCC-CCchhhhhHH
Q psy2649 1124 DKKMEAS-----------FEKPHKNYRLFISAE-PASDPEYHIIPQGVLDSSIKITNE-PPTGMQANLH 1179 (1637)
Q Consensus 1124 e~~l~~~-----------~~~~h~~FRLwLts~-~~~~~~~~~fP~~lLq~s~kv~~E-~p~glk~~l~ 1179 (1637)
.+.+... .-+-|++||||||+. |.| .+|+.+-.+..-|-|- .+.||-..|+
T Consensus 2250 ~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np-----~y~Pev~~kvtlINFtvT~~GLedQLL 2313 (3245)
T 3vkg_A 2250 NKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTA-----HFTPDLCSRVTFVNFTVTPSSLQSQCL 2313 (3245)
T ss_dssp ------------------------CCCEEEEECCTTC-----CCCHHHHHTSEEEECCCCHHHHHHHHH
T ss_pred HHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCC-----CCCHHHHhheEEEEEEecHHHHHHHHH
Confidence 4322110 013599999999985 333 3777766555555443 4566655444
No 32
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.03 E-value=0.028 Score=67.69 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=48.3
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc----ccCcchhhhHHHHHHHHhh---cccccEEEEecccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK----NYGIPDLKIDLASLYLKAG---LKNAGIMFLMTDSQ 143 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag---~~~~~~v~l~~d~~ 143 (1637)
...+.+|+||.|++|+||++++|..|...+..++.+..+. +|.-.+....+..++..+. ....+.+++++|-+
T Consensus 68 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~ 147 (376)
T 1um8_A 68 VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEID 147 (376)
T ss_dssp TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGG
T ss_pred cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHH
Confidence 3457889999999999999999999999999888876543 2211233334555444331 12245677777765
Q ss_pred cc
Q psy2649 144 VA 145 (1637)
Q Consensus 144 i~ 145 (1637)
-.
T Consensus 148 ~l 149 (376)
T 1um8_A 148 KI 149 (376)
T ss_dssp GC
T ss_pred HH
Confidence 44
No 33
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.00 E-value=0.024 Score=67.78 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=52.1
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
..|..++||.|++||||++++|..|...+..++.+..+.-.+ ..+....++.++..| -.+.+.|++|+|-+-
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a-~~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA-RENKPSIIFIDQVDA 154 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHH-HHTSSEEEEEECGGG
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHH-HHcCCeEEEEechHh
Confidence 356788999999999999999999999999999886442111 133445677777666 346778888887554
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.032 Score=65.67 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=51.4
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhc-cccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFIS-TLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~-~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..|..++||.|++||||++++|..|.-+ +..++.+..+.-.+ ..+....++.++..|. ...+.+++++|-+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~-~~~~~vl~iDEid 115 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR-ENKPSIIFIDEID 115 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH-HTSSEEEEEETTT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH-hcCCcEEEeecHH
Confidence 4577889999999999999999888776 78888876543211 2344566777777763 4567777777644
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.73 E-value=0.012 Score=74.13 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=47.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHH---------HHHHh----hcccccEEEEec
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLAS---------LYLKA----GLKNAGIMFLMT 140 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~---------~~~~a----g~~~~~~v~l~~ 140 (1637)
+..++||.|++|+||+++++..|.-.++.+++++.+...+.....+.++. ++..+ ...+++.|++++
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 34688999999999999999999999999998876543322111111111 11111 123677888988
Q ss_pred ccccc
Q psy2649 141 DSQVA 145 (1637)
Q Consensus 141 d~~i~ 145 (1637)
|-+-.
T Consensus 156 Eid~l 160 (516)
T 1sxj_A 156 EVDGM 160 (516)
T ss_dssp SGGGC
T ss_pred CCCcc
Confidence 87654
No 36
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.70 E-value=0.037 Score=66.55 Aligned_cols=38 Identities=29% Similarity=0.479 Sum_probs=30.4
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc---------cccceEEEecc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS---------TLEPFQIQLKK 110 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~---------~~~~~~i~~~~ 110 (1637)
.+.++++|.|++|+||+++++..+... ++.++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 456789999999999999998887766 66777776443
No 37
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.68 E-value=0.027 Score=65.92 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=50.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhc-----cccceEEEeccccCcchhhhHHHHHHHHhhcc-cccEEEEeccccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS-----TLEPFQIQLKKNYGIPDLKIDLASLYLKAGLK-NAGIMFLMTDSQVAD 146 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~-~~~~v~l~~d~~i~~ 146 (1637)
+|++|.|++|+||+++++..+.-. +..++.++.+...+..+.++.++......... +++.+++++|.+-..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC
Confidence 579999999999999998776653 34567776665555666666666655444443 667888888876544
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.66 E-value=0.034 Score=64.52 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=48.5
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhh---cccccEEEEeccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAG---LKNAGIMFLMTDSQV 144 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag---~~~~~~v~l~~d~~i 144 (1637)
..+||.|++|||||+++|..|.-.+..++.+..+.-.+ ..+-...++.++..|. -.+.+.|++++|-+-
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 35777899999999999999999999999887542111 1223345677777762 256778888887543
No 39
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.63 E-value=0.014 Score=77.20 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=68.8
Q ss_pred hhhhhhhhhhhhhhhhhhc-------CCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcch--hhhHH
Q psy2649 54 LVLFEDAMSHICRINRIME-------APRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPD--LKIDL 121 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~-------~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~--f~~dL 121 (1637)
++=.+++++.+.+..+..+ .|.||+||+|++|+||++++|..|... +..++.++++. |.... ....+
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~-~~~~~~~~~~~l 571 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE-YMEKHSTSGGQL 571 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG-GCSSCCCC---C
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh-cccccccccchh
Confidence 4446667777766655543 566899999999999999999888876 56788777653 22110 01122
Q ss_pred HHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCCC
Q psy2649 122 ASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPD 164 (1637)
Q Consensus 122 k~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp~ 164 (1637)
..++.+ ....|++++|-+-..+.....+..+|..|.+..
T Consensus 572 ~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~ 610 (758)
T 3pxi_A 572 TEKVRR----KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTD 610 (758)
T ss_dssp HHHHHH----CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-
T ss_pred hHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhccCeEEc
Confidence 333333 234588888877667777777777777777643
No 40
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.55 E-value=0.024 Score=66.23 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=29.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEec
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLK 109 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~ 109 (1637)
.|.++++|+|++||||++++|..|... +..++.+..+
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 356899999999999999999888776 3346666543
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.55 E-value=0.025 Score=66.54 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=49.2
Q ss_pred CceEEE-eecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 76 GNALLV-GVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 76 gh~lLv-G~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
.|++|+ |++|+||+++++..|.-.+.+++.++.+. ++..+.++.++.........+++.+++++|-+..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l 117 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD-CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRS 117 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT-CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc-cCHHHHHHHHHHHHhhcccCCCCeEEEEECCccc
Confidence 467666 55999999999999999999999887543 4444444445554444445567888888887544
No 42
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.49 E-value=0.044 Score=67.65 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=50.4
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+.|.| +||+|++||||++++|..|.-.+..++.+..+.-.. ...-...++.++..| ..+.|.+++++|-+-
T Consensus 47 ~~p~g-vLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A-~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 47 RMPKG-ILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA-KAHAPCIVFIDEIDA 119 (476)
T ss_dssp CCCSE-EEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHH-HHTCSEEEEEETGGG
T ss_pred CCCCe-EEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHH-HhcCCCEEEEechhh
Confidence 45666 999999999999999999999999998876443211 111123466677666 346788888888544
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.40 E-value=0.048 Score=65.30 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchh-----hhHHHHHHHHhhc---ccccEEEEecccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDL-----KIDLASLYLKAGL---KNAGIMFLMTDSQ 143 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f-----~~dLk~~~~~ag~---~~~~~v~l~~d~~ 143 (1637)
.|.+|+||.|++||||++++|..|...+..++.+..+. +....| ...++.++..+.. ...+.+++++|-+
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid 126 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATT-LTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQID 126 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH-HTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHH-hcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChh
Confidence 47899999999999999999999999999999887653 111111 2334555544421 2345677777754
No 44
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.38 E-value=0.035 Score=64.58 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccc----cCcchhhhHHHHHHHHh-h-cc--cccEEEEeccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKN----YGIPDLKIDLASLYLKA-G-LK--NAGIMFLMTDSQV 144 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~----y~~~~f~~dLk~~~~~a-g-~~--~~~~v~l~~d~~i 144 (1637)
.+.+|+||.|++|+||++++|..|...+..++.+..+.- |.-.+....++.++..+ | +. +.+.|++++|-+-
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 356899999999999999999999999999988876542 21112223355544432 1 11 2456788887654
Q ss_pred c
Q psy2649 145 A 145 (1637)
Q Consensus 145 ~ 145 (1637)
.
T Consensus 128 l 128 (310)
T 1ofh_A 128 I 128 (310)
T ss_dssp G
T ss_pred c
Confidence 4
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.30 E-value=0.035 Score=73.55 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=54.8
Q ss_pred hhhhhhhhcC-CCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEeccc----cCcchhhhHHHHHHHHh
Q psy2649 64 ICRINRIMEA-PRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKN----YGIPDLKIDLASLYLKA 128 (1637)
Q Consensus 64 i~ri~RvL~~-p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~----y~~~~f~~dLk~~~~~a 128 (1637)
+.++.++|.. ...|+||+|++|+||+++++..|... ++.++.+....- ....+|.+.++.++..+
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~ 274 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL 274 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH
Confidence 3445555553 67899999999999999998777654 666676653321 12357888899988777
Q ss_pred hcccccEEEEeccccc
Q psy2649 129 GLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 129 g~~~~~~v~l~~d~~i 144 (1637)
. ...+.+++++|-+.
T Consensus 275 ~-~~~~~iL~IDEi~~ 289 (758)
T 1r6b_X 275 E-QDTNSILFIDEIHT 289 (758)
T ss_dssp S-SSSCEEEEETTTTT
T ss_pred H-hcCCeEEEEechHH
Confidence 3 34567777777553
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.29 E-value=0.028 Score=65.43 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=48.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
.|..++||.|++||||++++|..|...+..++.+....-.+ ..+-...++.++..|. ...+.+++++|-+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~p~il~iDEid 118 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR-QAAPCVLFFDELD 118 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHH-HTCSEEEEECSTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHH-hcCCeEEEEEChH
Confidence 46677999999999999999999999998888775321100 0112345777777763 4567777777744
No 47
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.27 E-value=0.028 Score=74.35 Aligned_cols=82 Identities=12% Similarity=0.252 Sum_probs=53.8
Q ss_pred hhhhhhhhhhhhhhhhhhc-CCCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEeccccCcchhhhHHH
Q psy2649 54 LVLFEDAMSHICRINRIME-APRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNYGIPDLKIDLA 122 (1637)
Q Consensus 54 lvlf~~~i~hi~ri~RvL~-~p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y~~~~f~~dLk 122 (1637)
+|=-++.+..+. .+|. ...+|+||+|++|+||+++++..|... ++.++.++....| ..+|.+.++
T Consensus 182 iiG~~~~i~~l~---~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~-~G~~e~~l~ 257 (758)
T 3pxi_A 182 VIGRSKEIQRVI---EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY-RGEFEDRLK 257 (758)
T ss_dssp CCCCHHHHHHHH---HHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHH
T ss_pred ccCchHHHHHHH---HHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccc-cchHHHHHH
Confidence 444455555444 3343 456899999999999999999888774 8888888773333 357888999
Q ss_pred HHHHHhhcccccEEEEec
Q psy2649 123 SLYLKAGLKNAGIMFLMT 140 (1637)
Q Consensus 123 ~~~~~ag~~~~~~v~l~~ 140 (1637)
.++..+.- +.+++++++
T Consensus 258 ~~~~~~~~-~~~~iLfiD 274 (758)
T 3pxi_A 258 KVMDEIRQ-AGNIILFID 274 (758)
T ss_dssp HHHHHHHT-CCCCEEEEC
T ss_pred HHHHHHHh-cCCEEEEEc
Confidence 99888743 566777776
No 48
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.27 E-value=0.071 Score=69.59 Aligned_cols=69 Identities=25% Similarity=0.248 Sum_probs=55.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEec----cccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK----KNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
.|..++||.|++||||++++|-.|.-++..+|.+..+ +.+ .+-...++.++..| -.+.|++++|+|-+.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~--gese~~lr~lF~~A-~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA--GESESNLRKAFEEA-EKNAPAIIFIDELDA 308 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT--THHHHHHHHHHHHH-TTSCSEEEEEESGGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc--hHHHHHHHHHHHHH-HHcCCeEEEEehhcc
Confidence 5677899999999999999999999999999998733 222 34556788988888 577888888887543
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.25 E-value=0.03 Score=65.90 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=42.3
Q ss_pred CCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhhhHHHHHHHHhhc------ccccEEEEecccccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLKIDLASLYLKAGL------KNAGIMFLMTDSQVA 145 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~------~~~~~v~l~~d~~i~ 145 (1637)
.++++|.|++|+||+++++..+... +..++.+... +|.+++...+..... ..++.+++++|-+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD------DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFL 110 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH------HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH------HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccc
Confidence 3689999999999999999888776 7778776543 343444333322110 123567888875543
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.25 E-value=0.054 Score=67.00 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc--ccceEEEeccccC--cchhhhHHHHHHHHh-h-cccccEEEEeccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST--LEPFQIQLKKNYG--IPDLKIDLASLYLKA-G-LKNAGIMFLMTDS 142 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~--~~~~~i~~~~~y~--~~~f~~dLk~~~~~a-g-~~~~~~v~l~~d~ 142 (1637)
.|.+|+||.|++||||++++|-.|...+ ..++.+..+.-++ ..+.. .+++++.+| | -..++.+++++|-
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~a~~~~~~~~~il~iDEi 135 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIGLRIKETKEVYEGEV 135 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHH-HHHHHHHHTEEEEEEEEEEEEEEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhH-HHHHHHHHHHhhhhcCCcEEEEech
Confidence 3678899999999999999999999998 7777776543332 12333 388888887 2 2456677777764
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.21 E-value=0.035 Score=61.59 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=43.6
Q ss_pred CceEEEeecCCchhhHHhHHHhhcccc------------------------ceEEEeccccCcchhhhHHHHHHHHhh--
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLE------------------------PFQIQLKKNYGIPDLKIDLASLYLKAG-- 129 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~------------------------~~~i~~~~~y~~~~f~~dLk~~~~~ag-- 129 (1637)
+.++|.|++|+||+++++..+...++. ++.+... .....++++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 121 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA----SRTKVEDTRDLLDNVQYA 121 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETT----CGGGHHHHHHHHHSCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCc----ccccHHHHHHHHHHhhhc
Confidence 458899999999999988777655432 2222211 1133456777766553
Q ss_pred -cccccEEEEeccccccc
Q psy2649 130 -LKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 130 -~~~~~~v~l~~d~~i~~ 146 (1637)
..+++.+++++|-+-.+
T Consensus 122 ~~~~~~~vlviDe~~~l~ 139 (250)
T 1njg_A 122 PARGRFKVYLIDEVHMLS 139 (250)
T ss_dssp CSSSSSEEEEEETGGGSC
T ss_pred hhcCCceEEEEECccccc
Confidence 45678899999876543
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.91 E-value=0.051 Score=67.56 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=50.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
.|..++||.|++||||++++|..|.-.+..++.++... .| ..+....++.++..| ..+.+.+++++|-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~-~g~~~~~~~~~f~~A-~~~~p~iLfLDEI 306 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL-AGESESNLRKAFEEA-EKNAPAIIFIDEL 306 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC-TTHHHHHHHHHHHHH-HHTCSEEEEEESH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh-cchhHHHHHHHHHHH-HhcCCcEEEecch
Confidence 45677999999999999999999999999999887432 22 134456678888777 3456777766653
No 53
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.88 E-value=0.072 Score=60.16 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=46.0
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc--ccCcchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK--NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~--~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
++.|.| ++|+|++||||+|++|..|...+..++.+.... ..........++.++..+. ...+.+++++|-
T Consensus 46 ~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~i~~~Dei 117 (254)
T 1ixz_A 46 ARIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEI 117 (254)
T ss_dssp CCCCSE-EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT-TSSSEEEEEETH
T ss_pred CCCCCe-EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHH-hcCCeEEEehhh
Confidence 345777 999999999999999999998887766664221 1112233455667777763 234556665553
No 54
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.81 E-value=0.023 Score=58.25 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=47.0
Q ss_pred hhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhH-HHHHHHHhhcccccEE
Q psy2649 58 EDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKID-LASLYLKAGLKNAGIM 136 (1637)
Q Consensus 58 ~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~d-Lk~~~~~ag~~~~~~v 136 (1637)
+.++..+.+..+.......|++|.|.+||||++++|..+.... .++.++.+ +..++ ++..+..|. ..+
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~------~~~~~~~~~~~~~a~----~~~ 78 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARV------EYLIDMPMELLQKAE----GGV 78 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSST------THHHHCHHHHHHHTT----TSE
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechh------hCChHhhhhHHHhCC----CCe
Confidence 3444555544444445678999999999999999998887766 44444322 33333 455555552 235
Q ss_pred EEeccccccc
Q psy2649 137 FLMTDSQVAD 146 (1637)
Q Consensus 137 ~l~~d~~i~~ 146 (1637)
++++|-+...
T Consensus 79 l~lDei~~l~ 88 (143)
T 3co5_A 79 LYVGDIAQYS 88 (143)
T ss_dssp EEEEECTTCC
T ss_pred EEEeChHHCC
Confidence 5566644433
No 55
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.75 E-value=0.029 Score=65.93 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~ 146 (1637)
.+..+++|.|++|+||+++++..+...++.++.+....-. -..++...+..+ ...+.+++++|-+-..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~--~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE----KPGDLAAILANS--LEEGDILFIDEIHRLS 103 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC----SHHHHHHHHTTT--CCTTCEEEETTTTSCC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC----ChHHHHHHHHHh--ccCCCEEEEECCcccc
Confidence 3568999999999999999999998888887766433221 134555555432 2455677888865543
No 56
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.62 E-value=0.03 Score=65.71 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=44.3
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc-----cceEEEeccccCcchhhhHHHHHHHHhhcc-cccEEEEeccccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL-----EPFQIQLKKNYGIPDLKIDLASLYLKAGLK-NAGIMFLMTDSQVAD 146 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~-----~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~-~~~~v~l~~d~~i~~ 146 (1637)
+|++|.|++|+||+++++..+....+ .++.+..+...+....++.++......... +++.+++++|.+-..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT 123 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence 58999999999999999877665322 355554443323334444455544333233 567888888866543
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.62 E-value=0.043 Score=67.50 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=47.7
Q ss_pred hhhhhhcCCC--CceEEEeecCCchhhHHhHHHhhc-----cccceEEEeccccCcchhhhHHHHHHHHhh-------cc
Q psy2649 66 RINRIMEAPR--GNALLVGVGGSGKQSLSRLSAFIS-----TLEPFQIQLKKNYGIPDLKIDLASLYLKAG-------LK 131 (1637)
Q Consensus 66 ri~RvL~~p~--gh~lLvG~~GsGr~sl~rlaa~~~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag-------~~ 131 (1637)
.+.++...|+ .+++|.|++|+||++|++..+... +..++.+... +|..++...+.... ..
T Consensus 119 ~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~~~~~~~~~~ 192 (440)
T 2z4s_A 119 AALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGKLNEFREKYR 192 (440)
T ss_dssp HHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHcccHHHHHHHhc
Confidence 4445566665 689999999999999999888766 6666665433 34444444333221 11
Q ss_pred cccEEEEecccccc
Q psy2649 132 NAGIMFLMTDSQVA 145 (1637)
Q Consensus 132 ~~~~v~l~~d~~i~ 145 (1637)
.++.+++++|-+..
T Consensus 193 ~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 193 KKVDILLIDDVQFL 206 (440)
T ss_dssp TTCSEEEEECGGGG
T ss_pred CCCCEEEEeCcccc
Confidence 25677888876543
No 58
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.46 E-value=0.088 Score=60.41 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=45.1
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc--ccCcchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK--NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~--~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
..|.| ++|+|++||||+||+|..+...+..++.+.... ..........++.++..+. ...+.+++++|-
T Consensus 71 ~~~~g-vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~i~~iDei 141 (278)
T 1iy2_A 71 RIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK-RHAPCIVFIDEI 141 (278)
T ss_dssp CCCCE-EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH-TSCSEEEEEETH
T ss_pred CCCCe-EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH-hcCCcEEehhhh
Confidence 45677 999999999999999999998887666654221 1112233455667777663 234555555553
No 59
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.31 E-value=0.085 Score=63.29 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc------cccceEEEec
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS------TLEPFQIQLK 109 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~------~~~~~~i~~~ 109 (1637)
.++++++|.|++|+||+|+++..+... ++.++.+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 456789999999999999998887766 6677776643
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.28 E-value=0.052 Score=63.49 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=44.1
Q ss_pred CceEEEeecCCchhhHHhHHHhhc-----cccceEEEeccccCcchhhhHHHHHHH-Hhhc-ccccEEEEeccccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS-----TLEPFQIQLKKNYGIPDLKIDLASLYL-KAGL-KNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~-~ag~-~~~~~v~l~~d~~i~~ 146 (1637)
+|++|.|++|+||+++++..+.-. +..++.++.+...+..+.++-++.+.. ..+. .+++.+++++|.+-..
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 579999999999999988776653 334565554443343344443333321 1233 4557888888876543
No 61
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.10 E-value=0.079 Score=65.22 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=47.8
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhc-cccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFIS-TLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~-~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..|..++||.|++|+||++++|..|... +..++.+..+.-.+ ..+....++.++..|. ...+.|++|+|-+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid 237 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR-ENKPSIIFIDEID 237 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHH-HSCSEEEEESCTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH-HcCCeEEEEechH
Confidence 3567889999999999999999888877 77888775432111 1223344677776663 4567778777744
No 62
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.98 E-value=0.084 Score=65.49 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=47.0
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
++.|.| ++|+|++||||++|+|..|...+..++.+..+.-.. .......++.++..| -...+.+++++|-+
T Consensus 61 ~~ip~G-vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a-~~~~p~il~IDEId 133 (499)
T 2dhr_A 61 ARIPKG-VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA-KRHAPCIVFIDEID 133 (499)
T ss_dssp CCCCSE-EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTS-SSSSSCEEEEECGG
T ss_pred CCCCce-EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHH-HhcCCCEEEEehHH
Confidence 345777 999999999999999999999988888775432111 122334456666555 22345666666644
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.11 Score=60.61 Aligned_cols=73 Identities=11% Similarity=-0.043 Sum_probs=46.7
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc----------cccceEEEeccccC------------------cchhhhHHHHH
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS----------TLEPFQIQLKKNYG------------------IPDLKIDLASL 124 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~----------~~~~~~i~~~~~y~------------------~~~f~~dLk~~ 124 (1637)
.++++++|.|++|||||+++|.++.-. .+.++.++-..-.+ .....+.|+..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467899999999999999999988866 34566665222111 11223445666
Q ss_pred HHHh-hcccccEEEEecccccc
Q psy2649 125 YLKA-GLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 125 ~~~a-g~~~~~~v~l~~d~~i~ 145 (1637)
+... ...+++++++++|-+..
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHhhhccCCceEEEEecHHHh
Confidence 6543 33566778887775543
No 64
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.93 E-value=0.06 Score=61.28 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=35.3
Q ss_pred hhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhcc---ccceEEEec
Q psy2649 59 DAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIST---LEPFQIQLK 109 (1637)
Q Consensus 59 ~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~---~~~~~i~~~ 109 (1637)
.++..+.+..+.+....++++|.|.+||||++++|..+.... ..++.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 13 NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 444444433333334568999999999999999998887764 456666544
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.83 E-value=0.032 Score=62.12 Aligned_cols=63 Identities=16% Similarity=0.031 Sum_probs=39.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc---ccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST---LEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~---~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
++++++|.|++|+||+++++..+.-.+ ..++.+... ++.+.+..++.. .+++.+++++|-+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG------IHASISTALLEG---LEQFDLICIDDVDAV 116 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG------GGGGSCGGGGTT---GGGSSEEEEETGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH------HHHHHHHHHHHh---ccCCCEEEEeccccc
Confidence 568899999999999999987776554 445544432 333333332221 145667777875543
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.77 E-value=0.023 Score=64.90 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCc--chhhhHHHHHHHHhhcccccEEEEecccccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGI--PDLKIDLASLYLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~--~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
..++||.|++||||++++|..|.-.+..++.+..+.-.+. ..-...++.++..|. ...+.+++++|-+-.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~vl~iDEid~l 115 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAK-KQAPSIIFIDEIDAI 115 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHH-HSCSCEEEESCGGGT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHH-hcCCeEEEEeChhhh
Confidence 3448999999999999999999988888877653321100 000112334444442 235677888876543
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.072 Score=63.26 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=46.6
Q ss_pred hhhhhcCC-CCceEEEeecCCchhhHHhHHHhhccc------cceEEEeccccCcchhhhHHHHHHHHh----------h
Q psy2649 67 INRIMEAP-RGNALLVGVGGSGKQSLSRLSAFISTL------EPFQIQLKKNYGIPDLKIDLASLYLKA----------G 129 (1637)
Q Consensus 67 i~RvL~~p-~gh~lLvG~~GsGr~sl~rlaa~~~~~------~~~~i~~~~~y~~~~f~~dLk~~~~~a----------g 129 (1637)
+.+.+... .+|++|.|++|+||+++++..+...++ .+..+..+..-+...+++.++...... +
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLEN 128 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhccc
Confidence 33334433 378999999999999999887776432 455555443333445555555433221 1
Q ss_pred c-ccccEEEEecccccc
Q psy2649 130 L-KNAGIMFLMTDSQVA 145 (1637)
Q Consensus 130 ~-~~~~~v~l~~d~~i~ 145 (1637)
. .+...+++++|.+-.
T Consensus 129 ~~~~~~~vliiDE~~~l 145 (353)
T 1sxj_D 129 YPCPPYKIIILDEADSM 145 (353)
T ss_dssp SCCCSCEEEEETTGGGS
T ss_pred CCCCCceEEEEECCCcc
Confidence 1 234567777775544
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.66 E-value=0.12 Score=62.07 Aligned_cols=33 Identities=27% Similarity=0.112 Sum_probs=26.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhc----cccceEEEec
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFIS----TLEPFQIQLK 109 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~----~~~~~~i~~~ 109 (1637)
+++|.|++|+||+++++..+... ++.++.++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 69999999999999998887766 4566666543
No 69
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.51 E-value=0.087 Score=55.99 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc----cccceEEEeccccCcchhhhHHHHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS----TLEPFQIQLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~----~~~~~~i~~~~~y~~~~f~~dLk~~~ 125 (1637)
++.+++|+|++|+||+||++..+... |..++.+. ..++.+.++..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~------~~~~~~~~~~~~ 86 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD------TKDLIFRLKHLM 86 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE------HHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHh
Confidence 35677889999999999998887765 44544432 234555555443
No 70
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.47 E-value=0.079 Score=54.64 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=27.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc---cccceEEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQ 107 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~ 107 (1637)
++..+.|+|++|+||++|++..+... |..++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 77889999999999999999988866 55455443
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.23 E-value=0.14 Score=60.70 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=42.5
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc-----cceEEEeccccCcchhhhHHHHHHHHh-hcccccEEEEeccccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL-----EPFQIQLKKNYGIPDLKIDLASLYLKA-GLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~-----~~~~i~~~~~y~~~~f~~dLk~~~~~a-g~~~~~~v~l~~d~~i 144 (1637)
+|+++.|++|+||+|+++..|....+ .+.+++.+...+..+.++.++.+.... ...+..-+++++|.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~ 121 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADA 121 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCC
Confidence 57999999999999999988876433 355555544444444444444433211 1223456777777654
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.19 E-value=0.078 Score=63.49 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=43.0
Q ss_pred Cc-eEEEeecCCchhhHHhHHHhhccc------------------------cceEEEeccccCcchhhhHHHHHHHHhh-
Q psy2649 76 GN-ALLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLKKNYGIPDLKIDLASLYLKAG- 129 (1637)
Q Consensus 76 gh-~lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~~~y~~~~f~~dLk~~~~~ag- 129 (1637)
+| .++.|++|+||+++++..+...++ +++.+.....-+. ++++.++..+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 113 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKV----EDTRDLLDNVQY 113 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCS----SCHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCH----HHHHHHHHHHhh
Confidence 46 478999999999999887766554 2444443322222 34455554443
Q ss_pred --cccccEEEEeccccccc
Q psy2649 130 --LKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 130 --~~~~~~v~l~~d~~i~~ 146 (1637)
..+++.|++++|.+-.+
T Consensus 114 ~~~~~~~~vliiDe~~~l~ 132 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLS 132 (373)
T ss_dssp CCSSSSSEEEEEECGGGSC
T ss_pred ccccCCeEEEEEECcchhc
Confidence 45778889999876543
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.80 E-value=0.068 Score=71.58 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=64.9
Q ss_pred hhhhhhhhhhhhhhhhhhhc-------CCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEeccccCcchhh----
Q psy2649 53 NLVLFEDAMSHICRINRIME-------APRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLKKNYGIPDLK---- 118 (1637)
Q Consensus 53 ~lvlf~~~i~hi~ri~RvL~-------~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~~~y~~~~f~---- 118 (1637)
+++=.++++..+.+..+..+ .|.|++||+|++|+||++++|..+... +..++.++.+. |......
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~-~~~~~~~s~l~ 637 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE-YMEKHAVSRLI 637 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT-CCSSGGGGGC-
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh-ccchhHHHHHc
Confidence 34555677777766555442 355899999999999999999888877 66777776542 2211111
Q ss_pred ------------hHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCC
Q psy2649 119 ------------IDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEV 162 (1637)
Q Consensus 119 ------------~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gev 162 (1637)
..+..++.+ ....|++++|-+-..+.....+..+|..|.+
T Consensus 638 g~~~~~~G~~~~g~l~~~~~~----~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~ 689 (854)
T 1qvr_A 638 GAPPGYVGYEEGGQLTEAVRR----RPYSVILFDEIEKAHPDVFNILLQILDDGRL 689 (854)
T ss_dssp -------------CHHHHHHH----CSSEEEEESSGGGSCHHHHHHHHHHHTTTEE
T ss_pred CCCCCCcCccccchHHHHHHh----CCCeEEEEecccccCHHHHHHHHHHhccCce
Confidence 112222222 2346888888765555555555556666654
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.40 E-value=0.14 Score=67.72 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc--ccCcchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK--NYGIPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~--~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
.|+.++||+|++||||+|++|..|...+..++.+.... +....++...++.++..+. .+.+.+++++|
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDE 305 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE-KNAPAIIFIDE 305 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHH-HHCSEEEEEES
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHH-hcCCcEEEecc
Confidence 46678999999999999999999999998888776432 1223567777888888873 34566666655
No 75
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.20 E-value=0.14 Score=60.31 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=32.5
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceEEEeccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKN 111 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~ 111 (1637)
++|+||.|++|+||+++++..|...+..++.+..+..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~ 82 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPD 82 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCC
Confidence 6899999999999999999999999998888765543
No 76
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.11 E-value=0.079 Score=77.67 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCchhHHHHhHHHhhhccCCEEEEehhhhHHhhhhcHHHH
Q psy2649 1047 STTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETIQIASTKGHWAILQNVHLVKNWLPTLDKK 1126 (1637)
Q Consensus 1047 ~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~~~a~~~l~~a~~~G~WvlL~N~HL~~~wl~~Le~~ 1126 (1637)
..-|+++ ||..+..++.+.+. ..++.++++++.. -.+.|+.|++-|..|+|+|+ ...=|.|+-+
T Consensus 2005 ~r~PL~I------DPq~qa~~wik~~~----~~~l~v~~~~d~~---f~~~lE~ai~~G~pvLien~---E~lDp~L~pv 2068 (2695)
T 4akg_A 2005 DAVPFLL------DPSSHMITVISNYY----GNKTVLLSFLEEG---FVKRLENAIRFGSVVIIQDG---EFFDPIISRL 2068 (2695)
T ss_dssp SSEEEEE------CSSTTHHHHHHHHH----GGGEEEECTTSST---HHHHHHHHHHTTCEEEESCS---SSCCSTTHHH
T ss_pred ccCceEE------CcHHHHHHHHHHHh----cCCceEeeCCcHH---HHHHHHHHHHcCCeEEEccc---cccchhHHHH
Confidence 5679887 99999888887752 2468899988753 46789999999999999995 4455566666
Q ss_pred HHhhh---------------cCCCCceeEEEecCCCCCCCccccccccccccccccCC-CCchhhhhHH
Q psy2649 1127 MEASF---------------EKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNE-PPTGMQANLH 1179 (1637)
Q Consensus 1127 l~~~~---------------~~~h~~FRLwLts~~~~~~~~~~fP~~lLq~s~kv~~E-~p~glk~~l~ 1179 (1637)
+.... -+-|++|||+||+.-.+ ..+|+.+--+..-|-|- .+.||-..|+
T Consensus 2069 L~k~~~k~gg~~~i~lGdk~idy~~~FrlyltTkl~n----p~y~Pei~~~vt~iNFtvT~~GLedQLL 2133 (2695)
T 4akg_A 2069 ISREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPS----GDIPIFLRSRVRLVHFVTNKESIETRIF 2133 (2695)
T ss_dssp HTTCCEECSSCEEEECSSSEEECCSSCEEEEEECCTT----CCCCHHHHHHEEEEECCCCSHHHHHHHH
T ss_pred HhhHhhhcCCeEEEEECCeeEecCCCceEEEeeCCCC----CCCCHHHHhheeEEEEEEcHHHHHHHHH
Confidence 54210 13599999999985332 23777665555555443 4667766554
No 77
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.33 E-value=0.26 Score=59.09 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc-----------cccceEEEecc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS-----------TLEPFQIQLKK 110 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~-----------~~~~~~i~~~~ 110 (1637)
+.++++|.|++|+||+++++..+... ++.++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 45689999999999999998888765 77777776443
No 78
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.15 E-value=0.27 Score=58.05 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQV 144 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i 144 (1637)
+..|++|+|++|+|||||+|..|...++.+....- ....--.|+..++... . ...+++++|.+-
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg----~~~~~~~~l~~~~~~~--~-~~~v~~iDE~~~ 113 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG----PVLVKQGDMAAILTSL--E-RGDVLFIDEIHR 113 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET----TTCCSHHHHHHHHHHC--C-TTCEEEEETGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEec----hHhcCHHHHHHHHHHc--c-CCCEEEEcchhh
Confidence 55899999999999999999999999887553321 1111234565554332 2 234555555443
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.06 E-value=0.078 Score=70.21 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=49.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccC--cchhhhHHHHHHHHhhcccccEEEEecc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYG--IPDLKIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
.|++|+||+|++||||++++|..|...+..++.+..+.-++ ..+....++.++..|.. ..+.+++++|
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~p~vl~iDE 578 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ-AAPCVLFFDE 578 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHH-HCSBCCCCSS
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHh-cCCeEEEEEC
Confidence 47889999999999999999999999999998876543221 22444568888888743 2344444444
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.02 E-value=0.2 Score=65.48 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=53.7
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhccccceEEEec----cccCcchhhhHHHHHHHHhhcccccEEEEecccc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK----KNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQ 143 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~----~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~ 143 (1637)
..|..++||.|++||||+.++|-.|.-++..++.+..+ +-.+.. ..-++.++..| -+..|+|++|+|-+
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGes--e~~vr~lF~~A-r~~~P~IifiDEiD 580 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES--EANVREIFDKA-RQAAPCVLFFDELD 580 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSC--HHHHHHHHHHH-HTTCSEEEECSCGG
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchH--HHHHHHHHHHH-HHcCCceeechhhh
Confidence 34566799999999999999999999999999988633 222322 35689999888 45678888887744
No 81
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.62 E-value=0.3 Score=61.58 Aligned_cols=37 Identities=27% Similarity=0.154 Sum_probs=32.8
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEec
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK 109 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~ 109 (1637)
.++.|++|+|++|+||+|++|..|...+..+..+...
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 3788999999999999999999999999888887654
No 82
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.53 E-value=0.33 Score=59.05 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=40.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEecc----ccCcchhhhHHHHHHHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK----NYGIPDLKIDLASLYLKA 128 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~a 128 (1637)
|.+|+||+|++|+||++++|-.|...++.++.+..+. +|--.+-..-++.++..|
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a 107 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHH
Confidence 5689999999999999999999999999999887543 232223334455555444
No 83
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.47 E-value=0.29 Score=55.23 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=22.0
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
.+++|++||||+|+++.-|--.++.++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 57899999999999886555456666544
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.37 E-value=0.34 Score=56.27 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=48.5
Q ss_pred hhhhhhcCCCC-ceEEEeecCCchhhHHhHHHhhc------cccceEEEecc-ccCcchhhhHHHHHHHHh---hccccc
Q psy2649 66 RINRIMEAPRG-NALLVGVGGSGKQSLSRLSAFIS------TLEPFQIQLKK-NYGIPDLKIDLASLYLKA---GLKNAG 134 (1637)
Q Consensus 66 ri~RvL~~p~g-h~lLvG~~GsGr~sl~rlaa~~~------~~~~~~i~~~~-~y~~~~f~~dLk~~~~~a---g~~~~~ 134 (1637)
++.+.+...++ |.|+.|++|+||+++++.-|.-+ ..++..++... ..++. ++|+++..+ ...++.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id----~ir~li~~~~~~p~~~~~ 83 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID----DIRTIKDFLNYSPELYTR 83 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH----HHHHHHHHHTSCCSSSSS
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH----HHHHHHHHHhhccccCCc
Confidence 55556666555 56779999999999988877632 34677766543 34443 455544444 344556
Q ss_pred EEEEecccccc
Q psy2649 135 IMFLMTDSQVA 145 (1637)
Q Consensus 135 ~v~l~~d~~i~ 145 (1637)
-|+++++.+..
T Consensus 84 kvviIdead~l 94 (305)
T 2gno_A 84 KYVIVHDCERM 94 (305)
T ss_dssp EEEEETTGGGB
T ss_pred eEEEeccHHHh
Confidence 77778886654
No 85
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.22 E-value=0.28 Score=57.80 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=49.2
Q ss_pred hhhhhhhhcCCC-Cc-eEEEeecCCchhhHHhHHHhhccc------------------------cceEEEec---cccCc
Q psy2649 64 ICRINRIMEAPR-GN-ALLVGVGGSGKQSLSRLSAFISTL------------------------EPFQIQLK---KNYGI 114 (1637)
Q Consensus 64 i~ri~RvL~~p~-gh-~lLvG~~GsGr~sl~rlaa~~~~~------------------------~~~~i~~~---~~y~~ 114 (1637)
+.++.+.++..+ +| .|+.|++|+||+++++..|.-..+ +++.+... ++.++
T Consensus 11 ~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i 90 (334)
T 1a5t_A 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGV 90 (334)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCH
T ss_pred HHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCH
Confidence 344555666544 67 677899999999998877654433 34444432 22333
Q ss_pred chhhhHHHHHHHHhh---cccccEEEEeccccccc
Q psy2649 115 PDLKIDLASLYLKAG---LKNAGIMFLMTDSQVAD 146 (1637)
Q Consensus 115 ~~f~~dLk~~~~~ag---~~~~~~v~l~~d~~i~~ 146 (1637)
++++++...+. ..++..|++++|.+-..
T Consensus 91 ----~~ir~l~~~~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 91 ----DAVREVTEKLNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp ----HHHHHHHHHTTSCCTTSSCEEEEESCGGGBC
T ss_pred ----HHHHHHHHHHhhccccCCcEEEEECchhhcC
Confidence 44566555543 45677888888876654
No 86
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.11 E-value=2.6 Score=38.21 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhH
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADR 495 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 495 (1637)
+.++..++.+.+.+..++...+.++...+.+......++....+....++.+++.++.++..|..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666665555555443
No 87
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=88.91 E-value=2.4 Score=40.41 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=67.8
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhccccc
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASE 503 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E 503 (1637)
.|+.+++.++.++.++++.+.+|...-.+|.+-+.++.+|+..-....+|.-+|..++..++.+++.|..++..=+.+
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q 89 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ 89 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence 456778888888999999999999999999999999999999988888999999999999999999999888754433
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.79 E-value=0.3 Score=59.14 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=20.6
Q ss_pred CCCceEE--EeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALL--VGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lL--vG~~GsGr~sl~rlaa~~~ 99 (1637)
..+++++ .|++|+|||+|++-++.-.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456777 7999999999998776554
No 89
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.77 E-value=0.25 Score=58.57 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.3
Q ss_pred CCceEEEeecCCchhhHHhHHHh
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
..|++|+|++|+||+|+++..+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987777
No 90
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.42 E-value=0.17 Score=59.90 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
...||+||.|++|+||++++|..+...+
T Consensus 43 ~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 43 PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3568999999999999999998887665
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.27 E-value=0.35 Score=52.24 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=23.7
Q ss_pred CceEEEeecCCchhhHHhHHHhhc---cccceEE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS---TLEPFQI 106 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i 106 (1637)
.+++|.|++|+||+++++..+... +..++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 789999999999999987766644 3444444
No 92
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.18 E-value=0.28 Score=57.02 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=37.1
Q ss_pred hhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhc---cccceEEEec
Q psy2649 58 EDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQIQLK 109 (1637)
Q Consensus 58 ~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i~~~ 109 (1637)
+.++..+.+..+......+++||.|.+||||++++|..+... +..++.++..
T Consensus 8 s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 8 SPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp SHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 344555554444445677899999999999999999888754 4556666543
No 93
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.72 E-value=2.4 Score=38.47 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHh
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRL 496 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L 496 (1637)
++.-++.+.+.+...+..++..+...+......+..+..|+..+.....+.++.+..+.....+|+-+++-
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888888888888888888888888888888888888888888888888887654
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.64 E-value=2.1 Score=38.26 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEE 485 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~ 485 (1637)
-+++++.++..+-....-++.++.+++++-..|..+.+++...++.+..+.+.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~q 59 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35566666666666666666666666666666666666655555555544443
No 95
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.63 E-value=0.46 Score=55.19 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=47.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEE--------------------------------eccccCcchhhhHHHHH
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQ--------------------------------LKKNYGIPDLKIDLASL 124 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~--------------------------------~~~~y~~~~f~~dLk~~ 124 (1637)
.++|+|++||||+|+++--|--.+..++..+ +...|+..+|.++.+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~ 86 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAA 86 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHH
Confidence 4688999999999998766665566666542 23567778899998888
Q ss_pred HHHhhcccccEEEEecccccc
Q psy2649 125 YLKAGLKNAGIMFLMTDSQVA 145 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i~ 145 (1637)
+....-. .++++++--+.+-
T Consensus 87 i~~i~~~-g~~~IlvGGt~~y 106 (323)
T 3crm_A 87 MAKATAR-GRIPLLVGGTMLY 106 (323)
T ss_dssp HHHHHHT-TCEEEEEESCHHH
T ss_pred HHHHHHc-CCeEEEECCchhh
Confidence 8776434 4466665555443
No 96
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.07 E-value=0.28 Score=60.91 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=25.2
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
..+||+||.|++|+||++++|..|...+.
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 35789999999999999999988887643
No 97
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.06 E-value=1.8 Score=39.98 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=59.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh-hhhhHhhhcccccccc
Q psy2649 428 EPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI-DLADRLVNGLASENVR 506 (1637)
Q Consensus 428 ~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl-~ra~~Li~~L~~E~~r 506 (1637)
.|+...++.+..++..++.++.....++..+...+..-+.....+..++.+++.+++....-| +-|++.+..=.-++..
T Consensus 1 ~~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~ 80 (97)
T 2eqb_B 1 GPLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA 80 (97)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888888888888888888888888888888888888888888888888887766543 4555555544444444
Q ss_pred hHHHHHHHhhc
Q psy2649 507 WKDSVLGLQQS 517 (1637)
Q Consensus 507 W~~~~~~l~~~ 517 (1637)
-......+..+
T Consensus 81 ~e~kn~~L~~q 91 (97)
T 2eqb_B 81 IEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.29 E-value=0.43 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=21.0
Q ss_pred CceEEEeecCCchhhHHhHHHhhcc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
+++++.|++|+|||||++-.+.-.+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 7899999999999999887665544
No 99
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.46 E-value=0.41 Score=51.69 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
++-.++|+|++||||+|+++.-|-..++.++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 44578999999999999999888777777653
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.59 E-value=1.2 Score=52.49 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=25.7
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEEec
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLK 109 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~ 109 (1637)
+++++.|++|+|||+|++-.+.-.+..++-+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 6899999999999999887766555555545443
No 101
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.19 E-value=3.7 Score=40.81 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhcc
Q psy2649 469 FDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSA 518 (1637)
Q Consensus 469 ~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~ 518 (1637)
++.....+..|+..+.....+++--+.....|..++.+=...+..++..+
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555655555555555555555555555555443
No 102
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.99 E-value=0.83 Score=52.55 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=48.7
Q ss_pred eEEEeecCCchhhHHhHHHhhccccceEE--------------------------------EeccccCcchhhhHHHHHH
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQI--------------------------------QLKKNYGIPDLKIDLASLY 125 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~~i--------------------------------~~~~~y~~~~f~~dLk~~~ 125 (1637)
++++|++||||++|++--|--.+.+++.. ++...|+..+|.++-+.++
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~~~i 92 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEM 92 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHHHHH
Confidence 46789999999999765544444444332 2446788999999999988
Q ss_pred HHhhcccccEEEEeccccccccceeeeehhhhc
Q psy2649 126 LKAGLKNAGIMFLMTDSQVADEKFLVIINDMLA 158 (1637)
Q Consensus 126 ~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~ 158 (1637)
...--. .++++++--+.+ |+++|+.
T Consensus 93 ~~i~~~-g~~pilVGGTgl-------Yi~all~ 117 (316)
T 3foz_A 93 ADITAA-GRIPLLVGGTML-------YFKALLE 117 (316)
T ss_dssp HHHHHT-TCEEEEEESCHH-------HHHHHHS
T ss_pred HHHHhC-CCcEEEEcCcHH-------HHHHHHc
Confidence 877444 446666555443 4556664
No 103
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.73 E-value=4.8 Score=40.36 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh
Q psy2649 436 AANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDL 492 (1637)
Q Consensus 436 ~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 492 (1637)
+++.+....+++++++.+++..+..++..++.+++++.++.++++.++..++.++.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444433
No 104
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.84 E-value=3.1 Score=38.39 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=41.4
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDL 492 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 492 (1637)
+|+|+- .....+.++.....++..++..+...+....+|...+....+++..|..++...+.++.+
T Consensus 2 kVKPLL-~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~ 67 (89)
T 3bas_A 2 SHMPLL-SIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEE 67 (89)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 466766 345666777777777777777777777777777777778878887777775555544443
No 105
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.76 E-value=2.2 Score=57.71 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhh
Q psy2649 439 AELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQ 516 (1637)
Q Consensus 439 ~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~ 516 (1637)
++++..+++..+.+.++..+++++++++++++++.+|++.++++.+..+.+|+ .-++.|..|..+=++++++++.
T Consensus 970 ~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777888889999999999999999999999988888886665 7778888888888888887774
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=82.70 E-value=0.53 Score=50.22 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=42.9
Q ss_pred ceEEEeecCCchhhHH-hHHHhh--ccccceEEEec--cccCcchhh------------hHHHHHHHHhhcccccEEEEe
Q psy2649 77 NALLVGVGGSGKQSLS-RLSAFI--STLEPFQIQLK--KNYGIPDLK------------IDLASLYLKAGLKNAGIMFLM 139 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~-rlaa~~--~~~~~~~i~~~--~~y~~~~f~------------~dLk~~~~~ag~~~~~~v~l~ 139 (1637)
-.++.|+.|+||+|++ +++... .+.+++-+... ..|+..... .++.+++..+ .++.-++++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~--~~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYI--EEDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGC--CTTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHh--cCCCCEEEE
Confidence 4567899999999996 777654 45554433222 123211111 1122222222 234567888
Q ss_pred ccccccccceeeeehhhhcc
Q psy2649 140 TDSQVADEKFLVIINDMLAS 159 (1637)
Q Consensus 140 ~d~~i~~~~fle~in~lL~~ 159 (1637)
+|.|..++.+++.++.+...
T Consensus 83 DE~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHHHC
Confidence 88887655555555554443
No 107
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.33 E-value=0.66 Score=49.15 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.-+++|+|++||||+|+++..|--.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4578999999999999999887777777663
No 108
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=81.77 E-value=0.7 Score=48.50 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=24.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++....|+|++||||+|++|..+-..|..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 3456788999999999999988876676554
No 109
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.12 E-value=6 Score=37.47 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
++..+..+.+.+..+...++.++...+.+..+...++..+.+....++.+++.++.++.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433333333444333333333
No 110
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.00 E-value=6.2 Score=37.35 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
+.-++.+.+.+......++..+...+......+..+..|+..+.....+.+..+..+.....+++-+.+...
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666665555555555555555555555555555555566666655555554433
No 111
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.72 E-value=1.3 Score=51.69 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=42.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE--------------------------------Ee-ccccCcchhhhHHHH
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI--------------------------------QL-KKNYGIPDLKIDLAS 123 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i--------------------------------~~-~~~y~~~~f~~dLk~ 123 (1637)
-++|+|+.||||++|++--|--.+.+++.. ++ ...|+..+|+++-+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~ 121 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGK 121 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHH
Confidence 578899999999999765554444443321 23 467888899999888
Q ss_pred HHHHhhcccccEEEEecc
Q psy2649 124 LYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 124 ~~~~ag~~~~~~v~l~~d 141 (1637)
++...- ...+++++.--
T Consensus 122 ~i~~i~-~~g~~pIlvGG 138 (339)
T 3a8t_A 122 AVSEIT-GRRKLPVLVGG 138 (339)
T ss_dssp HHHHHH-HTTCEEEEECC
T ss_pred HHHHHH-hcCCeEEEEcC
Confidence 887663 34445555433
No 112
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.71 E-value=0.38 Score=56.50 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
+++|+|++|+||+|++|.-|...++.++.+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 489999999999999999998888776544
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.52 E-value=0.91 Score=47.42 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=24.4
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
-.+.|+|++||||+|++|+-|-..++.++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 36789999999999999999888776544
No 114
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.25 E-value=1.4 Score=50.65 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=48.5
Q ss_pred eEEEeecCCchhhHHh-HHHhhccccceEE--------------------------------EeccccCcchhhhHHHHH
Q psy2649 78 ALLVGVGGSGKQSLSR-LSAFISTLEPFQI--------------------------------QLKKNYGIPDLKIDLASL 124 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~r-laa~~~~~~~~~i--------------------------------~~~~~y~~~~f~~dLk~~ 124 (1637)
++++|++||||++|++ ||... +.+++.. ++...|+..+|.++.+.+
T Consensus 6 i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~ 84 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPL 84 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT-TEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHhC-ccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHH
Confidence 5678999999999965 45444 3332211 133568889999999999
Q ss_pred HHHhhcccccEEEEeccccccccceeeeehhhhccCC
Q psy2649 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGE 161 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~ge 161 (1637)
+...--.| ++++++--+.+ |+++|+..-.
T Consensus 85 i~~i~~~g-k~pIlVGGTgl-------Yi~aLl~g~~ 113 (322)
T 3exa_A 85 ITEIHERG-RLPFLVGGTGL-------YVNAVIHQFN 113 (322)
T ss_dssp HHHHHHTT-CEEEEESCCHH-------HHHHHHHTCC
T ss_pred HHHHHhCC-CcEEEEcCcHH-------HHHHHHcCCc
Confidence 88874444 45666444332 4667775433
No 115
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.18 E-value=1.9 Score=49.58 Aligned_cols=79 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeee---
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVII--- 153 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~i--- 153 (1637)
-+.++|.+||||+|++++-+...+.. |...+.++++--|.-......++.+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~--------------------------g~~~~~~~iv~~D~f~~~~~~~~~l~~~ 86 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEK--------------------------YGGEKSIGYASIDDFYLTHEDQLKLNEQ 86 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH--------------------------HGGGSCEEEEEGGGGBCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--------------------------CCCCceEEEeccccccCChHHHHHHhcc
Confidence 35678999999999998665554321 1011223332333323333333322
Q ss_pred ---hhhhccCCCCCCCCchHHHHHHHhhhcC
Q psy2649 154 ---NDMLASGEVPDLFTDDEIENIVNNIAAE 181 (1637)
Q Consensus 154 ---n~lL~~gevp~Lf~~ee~~~i~~~~~~~ 181 (1637)
|.++..-..|+-|+.+.+.+.+..++..
T Consensus 87 ~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g 117 (290)
T 1odf_A 87 FKNNKLLQGRGLPGTHDMKLLQEVLNTIFNN 117 (290)
T ss_dssp TTTCGGGSSSCSTTSBCHHHHHHHHHHHTC-
T ss_pred ccccchhhhccCcchhHHHHHHHHHHHhhcc
Confidence 2234444578888888888888877654
No 116
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.78 E-value=2.1 Score=46.15 Aligned_cols=58 Identities=21% Similarity=0.508 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCC-ceEEEeecCCchhhHH-hHHHhhcc
Q psy2649 29 PDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRG-NALLVGVGGSGKQSLS-RLSAFIST 100 (1637)
Q Consensus 29 ~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~g-h~lLvG~~GsGr~sl~-rlaa~~~~ 100 (1637)
.|+..+-++|. |. .++++-|-.+++.+.+ ..|.. |+++.|++||||++++ .||.++.|
T Consensus 25 ~~w~~I~~~l~-----yq----~~~~~~f~~~l~~~~~-----~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 25 GDWRPIVQFLR-----YQ----QIEFITFLGALKSFLK-----GTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CCSHHHHHHHH-----HT----TCCHHHHHHHHHHHHH-----TCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHH-----Hc----CcCHHHHHHHHHHHHh-----cCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56777776665 33 3666777677776665 35644 5888999999999985 45555543
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=79.42 E-value=1 Score=48.96 Aligned_cols=28 Identities=36% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.++..+.++|++||||+||+++-+-+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555777899999999999988776654
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.32 E-value=7.8 Score=38.86 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=40.3
Q ss_pred hhhheeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2649 414 VINIITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAE 484 (1637)
Q Consensus 414 V~Ai~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~ 484 (1637)
+.....|....+++.-+++++++.++++.....++...+.++.++++++++|++++.+...+..+|+.+++
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566655555555555555555555555555555555666666666666655555555555554443
No 119
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.08 E-value=0.99 Score=48.63 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=25.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++-...|+|++||||+|++|..+-..|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4557788999999999999998877676544
No 120
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=78.83 E-value=0.96 Score=47.09 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=25.5
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.+++|.|.+||||+|++++-|--.|+.++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 468899999999999999888777877663
No 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=78.41 E-value=1.2 Score=46.97 Aligned_cols=30 Identities=37% Similarity=0.368 Sum_probs=24.5
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
..+++++|.+||||+|+++..+-..++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 357889999999999999987766676555
No 122
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.00 E-value=15 Score=34.73 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcc
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGL 500 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L 500 (1637)
+.+|..+++.+..++++-..+..-+..+.+.|...+.+- .++.++|+.++.....+|+.|..=++-|
T Consensus 31 q~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 31 QQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333331 1124555555555555555554433333
No 123
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.90 E-value=0.92 Score=51.31 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=23.8
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
-.|+|..+++|++||||+|+.++.+-..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3688999999999999999988776553
No 124
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.88 E-value=8.9 Score=36.11 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTD 467 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~ 467 (1637)
++..+..++..|++.|.+++..+.+++++++++++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555444
No 125
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.64 E-value=1.5 Score=45.99 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=23.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.++|+|++||||+|++|.-+--.+..++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 46789999999999998877766665553
No 126
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=77.52 E-value=1.2 Score=46.38 Aligned_cols=30 Identities=10% Similarity=-0.109 Sum_probs=24.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
.++|+|++||||+|+++.-+-..++.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 367899999999999988777777766543
No 127
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.29 E-value=9.1 Score=36.22 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 439 AELAAASQKLAELKAKIASLEATLQELTDKF 469 (1637)
Q Consensus 439 ~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~ 469 (1637)
.....++..+...+.....++..+..|+..+
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 128
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.94 E-value=1.3 Score=47.09 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+|+.|.-+-..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 344678899999999999998876533
No 129
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.82 E-value=1.2 Score=46.60 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.0
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+++|+|++||||+|++|..|--.++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 5889999999999999988877776655
No 130
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.80 E-value=1 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=20.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
|+....|+|++|+||+||.++.+-..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678899999999999999877653
No 131
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=76.78 E-value=19 Score=32.73 Aligned_cols=65 Identities=9% Similarity=0.117 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLAD 494 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 494 (1637)
++.+|-.+++.+..++++-..+..-+..+.+.|..-+..-.+..++.++|+.++.....+|+-|.
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666556655555555544444556666667766666666553
No 132
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.15 E-value=10 Score=35.91 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLAD 494 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 494 (1637)
+.++..+..+.+.+..+...++.++...+.+......++....+....++.++..++.++..|.
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555554443
No 133
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=76.15 E-value=13 Score=31.39 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2649 428 EPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQA 483 (1637)
Q Consensus 428 ~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~ 483 (1637)
+|...+...++..+.............+.+...++.++.+.+.....++..++.++
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777776666666666666666666666665555554443
No 134
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.60 E-value=2.4 Score=50.55 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=47.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEE--------------------------------EeccccCcchhhhHHHHH
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQI--------------------------------QLKKNYGIPDLKIDLASL 124 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i--------------------------------~~~~~y~~~~f~~dLk~~ 124 (1637)
-++++|++||||++|++--|--.+.+++.. ++...|+..+|.++-+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~ 83 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNA 83 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHH
Confidence 357899999999999654443333344332 122458889999999999
Q ss_pred HHHhhcccccEEEEeccccccccceeeeehhhh
Q psy2649 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDML 157 (1637)
Q Consensus 125 ~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL 157 (1637)
+...--.| ++++++--+.+ |+++||
T Consensus 84 i~~i~~~g-~~pilVGGTgl-------Yi~aLl 108 (409)
T 3eph_A 84 IEDIHRRG-KIPIVVGGTHY-------YLQTLF 108 (409)
T ss_dssp HHHHHTTT-CEEEEECSCGG-------GGGGGG
T ss_pred HHHHHhcC-CCEEEECChHH-------HHHHHH
Confidence 88875444 46666554443 455666
No 135
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=75.56 E-value=2.5 Score=53.40 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=26.0
Q ss_pred hhhhhhhhhcCC----CCceEEEeecCCchhhHHhHHHh
Q psy2649 63 HICRINRIMEAP----RGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 63 hi~ri~RvL~~p----~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
.+.+|.+.|... .+.+.++|+||.|||||++.+++
T Consensus 136 ~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 136 HVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 345555555432 35678899999999999999885
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.19 E-value=1.1 Score=52.96 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=24.9
Q ss_pred hhhcCCCCceEEEeecCCchhhHHhHHHhh
Q psy2649 69 RIMEAPRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 69 RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
+++..|+|..+++|++||||+|+.+..+..
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 446679999999999999999999866543
No 137
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.15 E-value=20 Score=32.81 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHH
Q psy2649 434 LAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAA---VKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDS 510 (1637)
Q Consensus 434 l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~---~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~ 510 (1637)
+..+...+..+++.|..++..++++.+.+...+...+.. .++..-.+.+.. -+||.+ +.+.+|+++-..+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~-----aERadR--Ekl~~eKe~L~~q 76 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ-----AERHAR--EKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHhHHHHHHHH
Confidence 344555555556666666666666666555555433322 112222222221 122222 3355666666677
Q ss_pred HHHHhhccccCCcce
Q psy2649 511 VLGLQQSALTLPGDI 525 (1637)
Q Consensus 511 ~~~l~~~~~~l~gd~ 525 (1637)
+..+..+...|..+|
T Consensus 77 l~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 77 LEQLQREFNKLKVGC 91 (94)
T ss_dssp HHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhh
Confidence 777766666655443
No 138
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.97 E-value=2.1 Score=45.31 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=19.7
Q ss_pred CceEEEeecCCchhhHHhHHHhhcc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
-.+++.|++||||+|+++.-+--.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999877665444
No 139
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=74.87 E-value=1.6 Score=46.42 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=22.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.++|+|.+||||+|+++.-+--.++.++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 46789999999999988766655766554
No 140
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=74.58 E-value=2.9 Score=45.90 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=42.5
Q ss_pred hhhcCCCCceEEEeecCCchhhH-HhHHHhh--ccccceEEEecccc-Ccc--------hhh-------hHHHHHHHHhh
Q psy2649 69 RIMEAPRGNALLVGVGGSGKQSL-SRLSAFI--STLEPFQIQLKKNY-GIP--------DLK-------IDLASLYLKAG 129 (1637)
Q Consensus 69 RvL~~p~gh~lLvG~~GsGr~sl-~rlaa~~--~~~~~~~i~~~~~y-~~~--------~f~-------~dLk~~~~~ag 129 (1637)
..+..+++=.++.|..|+||+|+ .+++... .+..++-+....+. +.. .+. +++...+...-
T Consensus 6 ~~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 6 AFSKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp -----CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred hhccCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 44556777777789999999996 4555444 34455544322210 100 011 13444343332
Q ss_pred cccccEEEEeccccccccceeeee
Q psy2649 130 LKNAGIMFLMTDSQVADEKFLVII 153 (1637)
Q Consensus 130 ~~~~~~v~l~~d~~i~~~~fle~i 153 (1637)
..++.-|+++++.|...+..++.+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l 109 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA 109 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH
T ss_pred hCCCCCEEEEecCccCcHHHHHHH
Confidence 234556888888886544444433
No 141
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=74.30 E-value=1.7 Score=46.17 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.2
Q ss_pred CceEEEeecCCchhhHHhHHHhh-ccccceE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFI-STLEPFQ 105 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~-~~~~~~~ 105 (1637)
-+++|+|.+||||+|+++.-+-. .|+.++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 36789999999999998877766 6776663
No 142
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=74.18 E-value=1.6 Score=47.69 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=23.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++-.++|+|.+||||+|+++.-|--.++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 3456788999999999998876666666544
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.07 E-value=1.9 Score=46.33 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=24.3
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
-.++|+|.+||||+|+++.-+-..++.++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 368899999999999998777666766654
No 144
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=73.74 E-value=2 Score=45.50 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
+..|+|++||||+||.|+.+-+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999998887643
No 145
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=73.37 E-value=1.8 Score=48.48 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=27.1
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
+-.+.|+|++||||+|++|+.|-..++.++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 5689999999999999999999888876664
No 146
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.14 E-value=1.5 Score=47.27 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.6
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.++..+.|+|++||||+|++|..+-..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456677789999999999999887765
No 147
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=73.03 E-value=2 Score=45.17 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc---cccceEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS---TLEPFQI 106 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i 106 (1637)
++-.+.|+|.+||||+|++++-+-.. |+.++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 44467789999999999988776654 7666644
No 148
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.90 E-value=23 Score=33.36 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=41.8
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELKAKIASLEA----------TLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~----------~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
++.-+..+|..+|+.|...+....++++++...++ ++.-++..|..-...++++..+.+.....+.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 35567788888888888888888877777776666 4444555555544444555555554444443
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=72.82 E-value=1.6 Score=46.14 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.-..|+|++||||+||.+..+-..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34567889999999999988876543
No 150
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.67 E-value=13 Score=35.22 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHH
Q psy2649 437 ANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSV 511 (1637)
Q Consensus 437 ~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~ 511 (1637)
++..|.++++-|...+..-...+..+..|++.+++..... +.++++.+..+...+.-+...+.|.+|-....
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555555555555555555555555555544333 23344444444444444444444444443333
No 151
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=72.59 E-value=1.8 Score=45.64 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=24.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.++|+|.+||||+|+++.-+--.|+.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 47899999999999998877766776653
No 152
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=72.57 E-value=6.5 Score=43.87 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHH
Q psy2649 435 AAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGL 514 (1637)
Q Consensus 435 ~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l 514 (1637)
..+...+......+...+..+..++..+..++..+.....+...+..++..+...+..+..-+..+..+..++...+..+
T Consensus 16 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (284)
T 1c1g_A 16 ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333344444443333333344444444444444433
Q ss_pred hh
Q psy2649 515 QQ 516 (1637)
Q Consensus 515 ~~ 516 (1637)
..
T Consensus 96 ~~ 97 (284)
T 1c1g_A 96 EE 97 (284)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.43 E-value=1.6 Score=46.96 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=21.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++....|+|++||||+|++++.+-..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34467789999999999999877654
No 154
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.41 E-value=1.8 Score=44.98 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=23.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.++|+|.+||||+|+++.-+--.++.++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 47899999999999998887766766553
No 155
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=72.25 E-value=1.8 Score=44.83 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=20.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|+|++||||+|+++.- --.|+.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 3678999999999999877 44555544
No 156
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.03 E-value=1.9 Score=52.26 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=26.1
Q ss_pred hhhhhcCCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 67 INRIMEAPRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 67 i~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+.+++..|+|..+++|+.||||+|+.+..+...
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 344456789999999999999999988765543
No 157
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.00 E-value=8.2 Score=49.05 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhcccc
Q psy2649 462 LQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALT 520 (1637)
Q Consensus 462 l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~ 520 (1637)
++..+++.++..++.++++++....+.+++..++.+.-|..|...+..++.++.++...
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444556666667777888888888888888888889999888888877654
No 158
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=71.95 E-value=2.1 Score=46.43 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred EEEeecCCchhh-HHhHHHhh--ccccceEEEe--ccccCcchh------------hhHHHHHHHHhhcccccEEEEecc
Q psy2649 79 LLVGVGGSGKQS-LSRLSAFI--STLEPFQIQL--KKNYGIPDL------------KIDLASLYLKAGLKNAGIMFLMTD 141 (1637)
Q Consensus 79 lLvG~~GsGr~s-l~rlaa~~--~~~~~~~i~~--~~~y~~~~f------------~~dLk~~~~~ag~~~~~~v~l~~d 141 (1637)
++.|+-||||+| |.|.+-.. .+.+++-++. ...|+.... -+++.+++.. +.++.-|++++|
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~--i~~~~dvV~IDE 109 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH--DLTNVDVIGIDE 109 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS--CCTTCSEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH--HhcCCCEEEEec
Confidence 345888999999 66776443 3455544433 233332100 0011111111 233445777777
Q ss_pred ccccccceeeeehhhh
Q psy2649 142 SQVADEKFLVIINDML 157 (1637)
Q Consensus 142 ~~i~~~~fle~in~lL 157 (1637)
.|..++.+.+.++.|.
T Consensus 110 aQFf~~~~v~~l~~la 125 (219)
T 3e2i_A 110 VQFFDDEIVSIVEKLS 125 (219)
T ss_dssp GGGSCTHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHH
Confidence 7776655665555554
No 159
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.79 E-value=26 Score=31.32 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=7.5
Q ss_pred ccccccchHHHHHHH
Q psy2649 500 LASENVRWKDSVLGL 514 (1637)
Q Consensus 500 L~~E~~rW~~~~~~l 514 (1637)
|..|+..|...+..+
T Consensus 60 Lk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 60 LKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555444
No 160
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=71.71 E-value=1.8 Score=45.72 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=22.0
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|+|.+||||+|+++.-+--.++.++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5788999999999998887755565443
No 161
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.61 E-value=1.9 Score=44.61 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.++|.|.+||||+|+++.-+--.++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 36889999999999999888766776653
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=71.54 E-value=2.3 Score=45.24 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=23.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
-.++|+|.+||||+|+++.-|--.++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46788999999999999887765566544
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=71.53 E-value=1.7 Score=46.60 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.-..|+|++||||+|+.++.+-+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34456789999999999999877664
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=71.11 E-value=1.8 Score=45.29 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.2
Q ss_pred eEEEeecCCchhhHHhHHHh
Q psy2649 78 ALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~ 97 (1637)
++++|++||||+|+++.-+-
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 67899999999999877665
No 165
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.07 E-value=1.5 Score=46.04 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=17.6
Q ss_pred CCC-ceEEEeecCCchhhHHhH
Q psy2649 74 PRG-NALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 74 p~g-h~lLvG~~GsGr~sl~rl 94 (1637)
+.| -..|+|++||||+|+.|.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 444 566899999999999997
No 166
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=71.02 E-value=6.3 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=21.6
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhcc
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIST 100 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~~ 100 (1637)
..-++++|++|+||||+ ++||.++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 45678899999999998 788888764
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=70.93 E-value=4.1 Score=54.21 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=34.6
Q ss_pred hhhhhhhhhcC--CCCceEEEeecCCchhhHHhHHHhh----ccc--cceEEEeccccCcchh
Q psy2649 63 HICRINRIMEA--PRGNALLVGVGGSGKQSLSRLSAFI----STL--EPFQIQLKKNYGIPDL 117 (1637)
Q Consensus 63 hi~ri~RvL~~--p~gh~lLvG~~GsGr~sl~rlaa~~----~~~--~~~~i~~~~~y~~~~f 117 (1637)
.+.+|.+.|.. +.+-+.++|+||.|||||++-+++- ..+ .++-+.++..++...+
T Consensus 136 eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~I 198 (1221)
T 1vt4_I 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198 (1221)
T ss_dssp HHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHH
Confidence 34455555543 3456778999999999999977742 122 2455666665554343
No 168
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.79 E-value=1.8 Score=45.54 Aligned_cols=28 Identities=14% Similarity=-0.103 Sum_probs=19.0
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|.|.+||||+|+++.-+-..++.++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5678999999999999987766676655
No 169
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=70.62 E-value=2 Score=46.95 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=23.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.+.|+|++||||+|++++-+-..++.++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 5789999999999999998877775443
No 170
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.62 E-value=3.5 Score=48.13 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=39.0
Q ss_pred ceEEEeecCCchhhHHh-HHHhhccccceEEE--------------------------------eccccCcchhhhHHHH
Q psy2649 77 NALLVGVGGSGKQSLSR-LSAFISTLEPFQIQ--------------------------------LKKNYGIPDLKIDLAS 123 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~r-laa~~~~~~~~~i~--------------------------------~~~~y~~~~f~~dLk~ 123 (1637)
-++++|++||||+|+++ ||..+ +..++..+ ....|+..+|.++-+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l-~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF-NGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHHc-CCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 35788999999999975 45444 33322211 1125677789888888
Q ss_pred HHHHhhcccccEEEEeccc
Q psy2649 124 LYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 124 ~~~~ag~~~~~~v~l~~d~ 142 (1637)
.+... ....++++++.-.
T Consensus 88 ~i~~i-~~~g~~~IlvGGt 105 (340)
T 3d3q_A 88 YIKDI-TRRGKVPIIAGGT 105 (340)
T ss_dssp HHHHH-HHTTCEEEEECCC
T ss_pred HHHHH-HhCCCcEEEECCh
Confidence 77665 3334455554333
No 171
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.45 E-value=18 Score=35.87 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=62.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccc
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVR 506 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~r 506 (1637)
|+|+- .....+.++......+..++..+...+.....|...+....+++..|..+++.-...+.-|......|...+..
T Consensus 2 vKPLL-~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~e 80 (129)
T 2fxo_A 2 SSPLL-KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQ 80 (129)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66766 34555677777788888888888888888888888888888888888877777777777676666666555544
Q ss_pred hHHHHHHHhh
Q psy2649 507 WKDSVLGLQQ 516 (1637)
Q Consensus 507 W~~~~~~l~~ 516 (1637)
=...+.++..
T Consensus 81 Le~~l~el~~ 90 (129)
T 2fxo_A 81 LEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 172
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=70.44 E-value=9.7 Score=42.41 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhH
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADR 495 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 495 (1637)
++..++..+......+.....++..++..+..+...+.....+...++.++......+..+..
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQE 69 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444443333333
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.16 E-value=2.2 Score=45.75 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=23.2
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.++|+|.+||||+|+++.-+--.++.++.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 57789999999999998777655766553
No 174
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=69.92 E-value=2.6 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.4
Q ss_pred CceEEEeecCCchhhHHhHHHhhcc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
-.++|+|++||||+|+++.-+-..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578899999999999887766554
No 175
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.78 E-value=2 Score=45.98 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=22.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.+.|+|.+||||+|++++-+--.++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3678999999999999887776666544
No 176
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=69.78 E-value=1.9 Score=47.40 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++....|+|++||||+||.|+.+-+...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4556679999999999999998877543
No 177
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=69.77 E-value=4.7 Score=51.26 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=25.2
Q ss_pred hhhhhhhhhcC---CCCceEEEeecCCchhhHHhHHHh
Q psy2649 63 HICRINRIMEA---PRGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 63 hi~ri~RvL~~---p~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
.+.+|.+.|.. ..+-++++|++|+|||||++-+++
T Consensus 132 ~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 132 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34556666653 334577899999999999877654
No 178
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=69.68 E-value=1.9 Score=47.92 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++....|+|++||||+||.|+.+-+..-+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 55677799999999999999988776543
No 179
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=69.44 E-value=2 Score=44.50 Aligned_cols=26 Identities=27% Similarity=0.087 Sum_probs=22.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.-..|+|+.|+||+||.|..+-+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44467799999999999999988875
No 180
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=69.39 E-value=3.7 Score=47.47 Aligned_cols=46 Identities=13% Similarity=0.027 Sum_probs=31.0
Q ss_pred hhhhhhhhh-cCCCCc-eEEEeecCCchhhHHhHHHhhccccceEEEe
Q psy2649 63 HICRINRIM-EAPRGN-ALLVGVGGSGKQSLSRLSAFISTLEPFQIQL 108 (1637)
Q Consensus 63 hi~ri~RvL-~~p~gh-~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~ 108 (1637)
.+..++++| ..|.|+ .++.|++|+||++++.-.|+-.+..+.-+..
T Consensus 109 Gi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 109 CSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp BCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 344556777 234455 5778999999999987776656666444444
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=69.30 E-value=2.1 Score=46.37 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=20.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++--..|+|++||||+|+++..+-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44457789999999999988766554
No 182
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=69.13 E-value=2.2 Score=47.11 Aligned_cols=28 Identities=29% Similarity=0.201 Sum_probs=23.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++.+.|++||||+|+++..+-..++.++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 6788999999999999988877776554
No 183
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=68.90 E-value=2.5 Score=45.02 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=22.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|+|.+||||+|+++.-+--.++.++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5778999999999998877766665544
No 184
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=68.84 E-value=2.7 Score=47.16 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++-.+.|+|++||||+|++|+.|-..|+.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45567889999999999999999977776444
No 185
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=68.83 E-value=2.4 Score=46.07 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+++|+|++||||+|+++.-+--.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4688999999999998866544465554
No 186
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.83 E-value=2.2 Score=46.69 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=21.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.-..|+|++||||+||.++.+-+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44567799999999999999877654
No 187
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=68.82 E-value=2.5 Score=44.67 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|+|.+||||+|+++.-+--.++.++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4678999999999998877665565444
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=68.81 E-value=2.2 Score=46.18 Aligned_cols=27 Identities=22% Similarity=0.048 Sum_probs=22.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+|++++-+-..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444677899999999999998887654
No 189
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.46 E-value=2.1 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=23.0
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhh
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
..|+|..+++|++||||+|+.++.+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 468889999999999999998876654
No 190
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=68.14 E-value=5.2 Score=46.09 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=53.8
Q ss_pred hhhhhhhhc------CCCCceEEEeecCCchhhH-HhHHHhhc----cccceEEEeccccCcchhhhHHHHHHHHhhccc
Q psy2649 64 ICRINRIME------APRGNALLVGVGGSGKQSL-SRLSAFIS----TLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKN 132 (1637)
Q Consensus 64 i~ri~RvL~------~p~gh~lLvG~~GsGr~sl-~rlaa~~~----~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~ 132 (1637)
+..++|+|. .|+|-.++.|++||||+|| ..+++..+ +-.+.-|..... ... .-..+-|++-
T Consensus 11 i~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s--~~~------~ra~~lGvd~ 82 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG--ITP------AYLRSMGVDP 82 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC--CCH------HHHHHTTCCG
T ss_pred CHHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch--hhH------HHHHHhCCCH
Confidence 345688888 6889667789999999999 55555554 334554443322 211 1255668877
Q ss_pred ccEEEEeccccccccce-eeeehhh--hccCC--------CCCCCCchHHHH
Q psy2649 133 AGIMFLMTDSQVADEKF-LVIINDM--LASGE--------VPDLFTDDEIEN 173 (1637)
Q Consensus 133 ~~~v~l~~d~~i~~~~f-le~in~l--L~~ge--------vp~Lf~~ee~~~ 173 (1637)
.++.+. ..... +.. ++.++.+ +.++. |..||..+|++.
T Consensus 83 d~llv~-~~~~~--E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg 131 (333)
T 3io5_A 83 ERVIHT-PVQSL--EQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETED 131 (333)
T ss_dssp GGEEEE-ECSBH--HHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC-----
T ss_pred HHeEEE-cCCCH--HHHHHHHHHHHHHhhccCceEEEEecccccccchhccC
Confidence 765433 22221 233 4444444 45554 356776566553
No 191
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.04 E-value=17 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 434 LAAANAELAAASQKLAELKAKIASLEATLQELTDKFD 470 (1637)
Q Consensus 434 l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~ 470 (1637)
+.+++..+....+++...+..++++++.|++..++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333
No 192
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.03 E-value=15 Score=40.98 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHh
Q psy2649 446 QKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRL 496 (1637)
Q Consensus 446 ~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L 496 (1637)
.++..+++.+..++..+..++.+++....+..+++.+++.+..++.+.+.-
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444444444444444444333
No 193
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=68.02 E-value=2.7 Score=45.10 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=22.2
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.+.|+|.+||||+|+++.-+- .|+.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i 29 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL 29 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE
Confidence 367899999999999998887 565555
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=67.82 E-value=4.1 Score=44.09 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=29.8
Q ss_pred hhhhhhc--CCCCc-eEEEeecCCchhhHHhHHHhhccccceEEEe
Q psy2649 66 RINRIME--APRGN-ALLVGVGGSGKQSLSRLSAFISTLEPFQIQL 108 (1637)
Q Consensus 66 ri~RvL~--~p~gh-~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~ 108 (1637)
.+++++. .|.|. .+|+|.+|+||+|+++..|.-.+..++-+..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 4566774 45565 5678999999999988777644555554443
No 195
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.55 E-value=10 Score=38.52 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh--------------hH
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLA--------------DR 495 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra--------------~~ 495 (1637)
....|+.++..+..+..+...++..|..+...+..|...-++..+.-+.++.++...+.+++-| ++
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777776666666555555555555544444333 33
Q ss_pred hhhcccccccchHHHHHHHhhccc
Q psy2649 496 LVNGLASENVRWKDSVLGLQQSAL 519 (1637)
Q Consensus 496 Li~~L~~E~~rW~~~~~~l~~~~~ 519 (1637)
-|..|.++-..|+.....+...+.
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544
No 196
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=67.52 E-value=2.7 Score=45.59 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=22.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+++|.|++||||+|+++.-+--.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3689999999999998876655566554
No 197
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=67.50 E-value=3.4 Score=46.02 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+.-.++|.|++||||+|+++.-+--.++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3447889999999999998876654465544
No 198
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=67.44 E-value=2.6 Score=45.35 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=21.5
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+.|+|.+||||+|++++-+- .|+.++
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 56899999999999998877 566555
No 199
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=67.40 E-value=2.8 Score=45.63 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=22.8
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|+|.+||||+|+++.-|--.++.++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 5788999999999998877766676655
No 200
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=67.35 E-value=2.5 Score=44.72 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=20.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.++|+|.+||||+|+++.-+--.++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 467899999999999875554445543
No 201
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=67.17 E-value=2.6 Score=45.67 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=21.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+++|.|.+||||+|+++.-+--.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 3688999999999998866554566555
No 202
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=67.12 E-value=2.9 Score=45.87 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=22.0
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|+|.+||||+|+++.-|--.++.++
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 5788999999999998776655565544
No 203
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=67.08 E-value=2.6 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.6
Q ss_pred ceEEEeecCCchhhHHhHHHhh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
-.+|+|++||||+|+.|..+--
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 3578999999999999987753
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=67.01 E-value=4.8 Score=42.69 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=21.2
Q ss_pred eEEEeecCCchhhHHhHHHhhc---cccceE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFIS---TLEPFQ 105 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~---~~~~~~ 105 (1637)
+.|.|.+||||+|+++.-+-.. |+.++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5688999999999988766555 776653
No 205
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=66.41 E-value=2.5 Score=46.09 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++....|+|++||||+||.|+.+-+...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5567779999999999999998877543
No 206
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=66.13 E-value=2.6 Score=46.77 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=23.6
Q ss_pred hhhhhhc--C-CCCceEEEeecCCchhhHHhHHH
Q psy2649 66 RINRIME--A-PRGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 66 ri~RvL~--~-p~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
.++.+|. - ++.-..|+|++||||+||.+..+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4556663 3 45567789999999999999776
No 207
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=65.93 E-value=2.4 Score=47.10 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=22.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++....|+|++||||+||.|+.+-+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45577799999999999999987664
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=65.93 E-value=2.5 Score=44.71 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=21.2
Q ss_pred hhhhhcCCCC-ceEEEeecCCchhhHHhHHHhhc
Q psy2649 67 INRIMEAPRG-NALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 67 i~RvL~~p~g-h~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++|-...+.| .++|+|.+||||+|+++..+-..
T Consensus 4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp ----CCCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444444444 56789999999999988765543
No 209
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=65.85 E-value=4.6 Score=55.71 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.3
Q ss_pred CCceEEEeecCCchhhHHhHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLS 95 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rla 95 (1637)
...+|+.|.+|+|||..||++
T Consensus 169 ~Q~i~isGeSGaGKTe~~k~~ 189 (1184)
T 1i84_S 169 DQSILCTGESGAGKTENTKKV 189 (1184)
T ss_dssp CEEEECCCSTTSSTTHHHHHH
T ss_pred CcEEEEecCCCCCccHHHHHH
Confidence 355677799999999998875
No 210
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=65.75 E-value=3.4 Score=44.41 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=17.9
Q ss_pred ceEEEeecCCchhhHHhHHHhh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
-+.++|.+||||+|+++..+-.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4667899999999998876654
No 211
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.71 E-value=17 Score=31.71 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAA 472 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~ 472 (1637)
|.-++..+.+..+++....+.+++++..|.+.++.|+.|+.++++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566666666666666666666666666666665543
No 212
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=65.54 E-value=2.6 Score=45.53 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=21.6
Q ss_pred cCCCC-ceEEEeecCCchhhHHhHHHhhcc
Q psy2649 72 EAPRG-NALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 72 ~~p~g-h~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.-+.| -..|+|++||||+||.|+.+-+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 33445 456899999999999999887764
No 213
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.46 E-value=28 Score=32.00 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATL--------------QELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l--------------~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
..++...+.++...+..++.......+++.+. ++..+.++...+.+..|+..+...+.|+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433333 3334444444455555555555555544
No 214
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=65.40 E-value=2.5 Score=47.85 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++....|+|++||||+||.|+.+-+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4556779999999999999999887644
No 215
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=65.36 E-value=2.5 Score=47.30 Aligned_cols=34 Identities=29% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEe
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQL 108 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~ 108 (1637)
++....|+|++||||+||.|+-+-+..-+ =+|.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~ 58 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF 58 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence 45577799999999999999988776544 44433
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=65.13 E-value=5 Score=43.15 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=22.5
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQI 106 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i 106 (1637)
-.++|.|.+||||+|+++.-+--.+...+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3567899999999999887765544444433
No 217
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=65.08 E-value=4 Score=48.56 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=26.2
Q ss_pred cCCCC-ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 72 EAPRG-NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 72 ~~p~g-h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
..|.| ..+|+|++||||+|+++..+...+..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 44444 67789999999999999888776665554
No 218
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=65.01 E-value=5.1 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=18.7
Q ss_pred CceEEEeecCCchhhHHhHHHhh
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
-.++|+|.+||||+|+++.-+--
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999998776654
No 219
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=64.91 E-value=2.9 Score=45.63 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=21.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.++|+|++||||+|+++.-|--.++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 578899999999999887766556533
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=64.87 E-value=3.6 Score=43.90 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=22.5
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.+.|+|.+||||+|++++-+-. |+.++
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 4678899999999999888776 77665
No 221
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=64.82 E-value=2.1 Score=54.44 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=25.3
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
|+||+|++|+||++++|..|...+...+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 99999999999999999999888755443
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=64.76 E-value=3 Score=44.91 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=19.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++--.+|+|++||||+|+++..+-..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33456789999999999987665443
No 223
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=64.72 E-value=2.6 Score=47.13 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++....|+|++||||+||.|+.+-+..-+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45567799999999999999988775443
No 224
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=64.64 E-value=3.1 Score=46.79 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=21.3
Q ss_pred ceEEEeecCCchhhHHhHHHhh---ccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFI---STLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~---~~~~~~ 104 (1637)
-++|+|.+||||+|+++.-+.- .|+.++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 4678899999999998766554 566555
No 225
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=64.58 E-value=3.3 Score=44.41 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=20.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.++|.|.+||||+|+++.-+--.++.++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 3677899999999998655544465444
No 226
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=64.50 E-value=3.8 Score=43.29 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=22.2
Q ss_pred eEEEeecCCchhhHHhHHHhhc---cccceEE
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFIS---TLEPFQI 106 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i 106 (1637)
+.|.|.+||||+|+++.-+--. |+.++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5789999999999987655543 7776654
No 227
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=64.37 E-value=16 Score=42.33 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=23.8
Q ss_pred hhhhcCC-CC---ceEEEeecCCchhhHHhHHHhhcc
Q psy2649 68 NRIMEAP-RG---NALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 68 ~RvL~~p-~g---h~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
..++..+ .+ -..++|++||||+|+++.-+.+.+
T Consensus 81 ~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 81 YQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455554 22 366789999999999988877754
No 228
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.36 E-value=33 Score=34.44 Aligned_cols=48 Identities=25% Similarity=0.235 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQ 480 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~ 480 (1637)
.++.++.++...+.++...+..+.+-.+.++.+++++.....+...++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444433333333
No 229
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=64.33 E-value=2.7 Score=47.47 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++....|+|++||||+||.|+.+-+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4456679999999999999998877543
No 230
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.32 E-value=3.2 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.7
Q ss_pred CceEEEeecCCchhhHHhHHHhhc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
....++|++|+||+|+.++.+...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 467899999999999988888765
No 231
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=64.23 E-value=30 Score=32.97 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccc
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDK----FDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVR 506 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~----~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~r 506 (1637)
-.+..+..+.+...+..-........+++.++.+++.+ .++.....+.++.++..-...+...+.-++.+..+...
T Consensus 7 LRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~ 86 (107)
T 2no2_A 7 LRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEAN 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666665522 22233345556666666666666677778888888889
Q ss_pred hHHHHHHHhhccccCCc
Q psy2649 507 WKDSVLGLQQSALTLPG 523 (1637)
Q Consensus 507 W~~~~~~l~~~~~~l~g 523 (1637)
|...+..+......+.+
T Consensus 87 l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 87 WAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999888887776654
No 232
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=64.17 E-value=2.7 Score=47.32 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++....|+|++||||+||.|+.+-+..-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4456779999999999999998877543
No 233
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=64.05 E-value=2.7 Score=45.70 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhh
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.++....|+|++||||+||.|+.+-+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35667789999999999999998876
No 234
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=63.98 E-value=5.1 Score=45.83 Aligned_cols=21 Identities=43% Similarity=0.332 Sum_probs=16.8
Q ss_pred ceEEEeecCCchhhHHhHHHh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~ 97 (1637)
-++|+|++||||+|+++.-+-
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999776554
No 235
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=63.87 E-value=2.9 Score=46.80 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
++....|+|++||||+||.|+-+-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556779999999999999998776
No 236
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=63.85 E-value=3 Score=45.68 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCCCc-eEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGN-ALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh-~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
+|.|- ..|+|++||||+||.+..+-...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45554 45799999999999998776654
No 237
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=63.72 E-value=2.8 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=19.3
Q ss_pred eEEEeecCCchhhHHhHHHhhcc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
..|+|++||||+|+.|..+-...
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999998776543
No 238
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=63.72 E-value=2.7 Score=46.88 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+||.|+-+-+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455777999999999999999887754
No 239
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=63.62 E-value=3.3 Score=52.88 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=26.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
++.|++|+|++||||+|++|..+.+.....
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 557999999999999999999998876543
No 240
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.59 E-value=2.8 Score=46.62 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++....|+|++||||+||.|+.+-+..-+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 44567799999999999999988775433
No 241
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=63.41 E-value=3.2 Score=47.87 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=24.0
Q ss_pred cCCCC-ceEEEeecCCchhhHHhHHHhhccccc
Q psy2649 72 EAPRG-NALLVGVGGSGKQSLSRLSAFISTLEP 103 (1637)
Q Consensus 72 ~~p~g-h~lLvG~~GsGr~sl~rlaa~~~~~~~ 103 (1637)
.-|.| ...|+|++||||+||.++-+-+.+-++
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 44555 566899999999999998887653333
No 242
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=63.35 E-value=3.5 Score=45.16 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
++|.|++||||+|+++.-+--.++.++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 678999999999998876655565443
No 243
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=63.31 E-value=3.1 Score=43.93 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.1
Q ss_pred eEEEeecCCchhhHHhHHHhh
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
+++.|++||||+|+++..+--
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999998655543
No 244
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=63.23 E-value=2.9 Score=46.11 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=22.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+||.|+.+-+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 455677999999999999999887654
No 245
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=63.16 E-value=2.9 Score=46.86 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+||.|+.+-+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455677999999999999999887654
No 246
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=63.07 E-value=3.9 Score=45.08 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=22.9
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
-+++|+|.+||||+|+++.-|--.++.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 36788999999999998877766565544
No 247
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=62.95 E-value=3.9 Score=49.52 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCCc-eEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 73 APRGN-ALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 73 ~p~gh-~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.+.+. ++|+|++||||+|+++.-+--.++.++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 33444 4568999999999988755444555443
No 248
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=62.79 E-value=3 Score=47.57 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++....|+|++||||+||.|+.+-+...+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 45567799999999999999988776543
No 249
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=62.78 E-value=4.9 Score=48.19 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHh---hccccceEEEeccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAF---ISTLEPFQIQLKKN 111 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~---~~~~~~~~i~~~~~ 111 (1637)
..+|++++|++||||+++.+.-+. ..+..++-+++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 679999999999999999876543 24556666665544
No 250
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=62.52 E-value=4.7 Score=47.82 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
.+++..+++|++||||+|+.++-+.....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 47889999999999999999987766543
No 251
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=62.36 E-value=3.1 Score=47.04 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++....|+|++||||+||.|+.+-+..-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4456679999999999999998877543
No 252
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=62.30 E-value=3.6 Score=47.53 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=20.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++....++|++||||+|+.+.-|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34567789999999999977766554
No 253
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=62.22 E-value=3.1 Score=47.28 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
+|.-..|+|++||||+||.|+.+-+..-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3445678999999999999998887654
No 254
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=62.20 E-value=3.3 Score=46.88 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=21.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
++.-..|+|++||||+||.|+.+-+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456679999999999999998876
No 255
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=62.19 E-value=3.1 Score=46.93 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++....|+|++||||+||.|+-+-+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 455677999999999999999887643
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=62.11 E-value=3.2 Score=47.12 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=22.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++....|+|++||||+||.|+.+-+..-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4456678999999999999998877543
No 257
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=61.93 E-value=4.5 Score=46.77 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=19.9
Q ss_pred CCceEEEeecCCchhhHHhHHHh
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
..+++|.|++|+|||+|++-.|.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999876655
No 258
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=61.88 E-value=5.1 Score=42.77 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=23.2
Q ss_pred CceEEEeecCCchhhHHhHHHhhc-cccceEE
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS-TLEPFQI 106 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~-~~~~~~i 106 (1637)
-.+.|+|.+||||+|+++.-+--. |+.++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 357889999999999977665544 6766543
No 259
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=61.77 E-value=9.8 Score=52.48 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAV 473 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~ 473 (1637)
+++++++++...++++...++.+.+++++++.++.+.+++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443333
No 260
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=61.73 E-value=3.2 Score=46.84 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++.-..|+|++||||+||.|+.+-+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 4556779999999999999998877543
No 261
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=61.71 E-value=4.3 Score=45.14 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
...+.|+|++||||+|++|.-+--.|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3578899999999999998877444543
No 262
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=61.10 E-value=4.1 Score=44.24 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=21.9
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.+.|+|.+||||+|+++.-+- .|+.++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 467889999999999988777 566555
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=61.05 E-value=3.5 Score=45.83 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.7
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
....|+|++||||+||.|+.+-+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 77889999999999999998877543
No 264
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=60.96 E-value=3.5 Score=46.34 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=23.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+-+-+...+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44467799999999999999988775433
No 265
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=60.43 E-value=4.2 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
-+.++|.+||||+|++++-+-..
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999988877654
No 266
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=59.75 E-value=77 Score=30.12 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy2649 428 EPKRKALAAANAELAAASQKLAELKAKI-ASLEATLQELTDKFDAAVKEKL 477 (1637)
Q Consensus 428 ~P~~~~l~~~e~~l~~~~~~l~~~~~~l-~~le~~l~~l~~~~~~~~~e~~ 477 (1637)
.|+..+|+.+....+......+.++..| .+.+.++++++.+|+...++.+
T Consensus 35 DPL~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 35 DPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999888888877666 5799999999999999887554
No 267
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=59.65 E-value=4.2 Score=43.46 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=21.9
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+.|+|..||||+|+++.-+-..|+.++
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 346799999999999988877677666
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=59.51 E-value=3.9 Score=44.64 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=25.6
Q ss_pred hhhhhhhc--C-CCCceEEEeecCCchhhHHhHHHhh
Q psy2649 65 CRINRIME--A-PRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 65 ~ri~RvL~--~-p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
-.++++|. . ++.-..|+|++||||+||.+..+..
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45666773 2 4456778999999999999988764
No 269
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=59.42 E-value=4.8 Score=42.23 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=25.6
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
+....|-.+++|++||||+|+.+..+++.+.
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4445677789999999999999999988663
No 270
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=59.22 E-value=5.1 Score=42.92 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=24.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceE
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQ 105 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~ 105 (1637)
.+.+.|.+||||+|+++..|-..|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 57789999999999999988877866653
No 271
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=59.11 E-value=11 Score=46.29 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
+.-.+|+|++||||+|+.+.-+.+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 44567899999999999777666543
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.72 E-value=3.5 Score=43.85 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=14.9
Q ss_pred eEEEeecCCchhhHHhH
Q psy2649 78 ALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rl 94 (1637)
++|+|++|+||+||.+-
T Consensus 4 IVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKK 20 (186)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999999753
No 273
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=58.60 E-value=3.9 Score=47.84 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.+++..+++|++||||+|+.++-+-...
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4788999999999999999998777654
No 274
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=58.37 E-value=4.1 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=21.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+|....|+|++||||+||.|+-+-+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45567799999999999999977664
No 275
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=58.12 E-value=4.3 Score=46.82 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.-..|+|++||||+|+.+.-|.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567789999999999977666553
No 276
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=58.11 E-value=54 Score=30.10 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=47.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHh
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKI----------ASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRL 496 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l----------~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L 496 (1637)
+.-+..++..+++.+...+..+.++++.+ .-++..+.-+++.|..-...++++..+.+.....+....+=
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456667777766666666555555444 44556666677777777777777777777777777766665
Q ss_pred hhccccc
Q psy2649 497 VNGLASE 503 (1637)
Q Consensus 497 i~~L~~E 503 (1637)
++.|..|
T Consensus 84 ~~~L~~~ 90 (94)
T 3jsv_C 84 FNKLKVG 90 (94)
T ss_dssp TC-----
T ss_pred HHHHHHh
Confidence 5555543
No 277
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=58.09 E-value=4.5 Score=47.67 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.|-+..-+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 44566789999999999999988876543
No 278
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=57.96 E-value=6.8 Score=43.02 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=24.7
Q ss_pred hhhhhhhc--CCCC-ceEEEeecCCchhhHHhHHHh
Q psy2649 65 CRINRIME--APRG-NALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 65 ~ri~RvL~--~p~g-h~lLvG~~GsGr~sl~rlaa~ 97 (1637)
..++++|. .|.| -.+|+|++|+||+|+++..|.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45677774 3455 567789999999999887666
No 279
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=57.79 E-value=3.3 Score=47.84 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
|+....|+|++||||+||.++.+-+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 5667889999999999999998877544
No 280
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=57.59 E-value=4.3 Score=43.62 Aligned_cols=26 Identities=31% Similarity=0.248 Sum_probs=20.0
Q ss_pred CceEEEeecCCchhhHHhHHHhhccc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
-.+++.|.+||||+|+++.-+--.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 35778999999999998776654443
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.33 E-value=3.9 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=14.0
Q ss_pred CceEEEeecCCchhhHHhHHH-hhc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSA-FIS 99 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa-~~~ 99 (1637)
.-..|+|++||||+|+.+..+ -..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 346789999999999998876 543
No 282
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=57.23 E-value=6.9 Score=49.31 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=25.9
Q ss_pred hhhhhhhhcCCCCc----eEEEeecCCchhhHHhHHHhhcc
Q psy2649 64 ICRINRIMEAPRGN----ALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 64 i~ri~RvL~~p~gh----~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
|.|+.|--..|.|| +++.|.+||||+|+++..+-..+
T Consensus 381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 55555555544444 56789999999999887665544
No 283
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=57.14 E-value=5.2 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.2
Q ss_pred eEEEeecCCchhhHHhHHHhhccc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++|+|++||||.|.++.-|--.|+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 678999999999998776655453
No 284
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=57.10 E-value=6.3 Score=44.30 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhc-CCCCceEEEeecCCchhhHHhHHHh
Q psy2649 30 DWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIME-APRGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 30 ~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~-~p~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
+.+.+.++|. .+ .++.+.|..++..+..= + .++.+++|.|++||||+.+++-.|.
T Consensus 71 ~~n~i~~~l~--~q-------g~~~~~~~~~l~~~l~~----~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 71 SSNRIYKILE--LN-------GYDPQYAASVFLGWATK----KFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp GGCHHHHHHH--HT-------TCCHHHHHHHHHHHHTT----CSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred chHHHHHHHH--Hc-------CCCHHHHHHHHHHHHhC----CCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 4566666662 22 24556666666655542 2 2367899999999999999995555
No 285
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=57.10 E-value=4.8 Score=49.40 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=23.8
Q ss_pred hcCCCCceEEEeecCCchhhH-HhHHHhhccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSL-SRLSAFISTL 101 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl-~rlaa~~~~~ 101 (1637)
+..+.|++++.|.+|||||++ +.+++++...
T Consensus 41 i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 41 IKEKKHHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 444678999999999999998 5566666543
No 286
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=56.98 E-value=68 Score=29.03 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 449 AELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 449 ~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
...+..+..++..+++++.+.+...+|-+.|-.---..+..+..-.+|++
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33445555555555555555555544444333222223333344455555
No 287
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=56.78 E-value=4.5 Score=47.80 Aligned_cols=29 Identities=31% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.|-+..-+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 45567799999999999999988876543
No 288
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.50 E-value=67 Score=29.90 Aligned_cols=29 Identities=7% Similarity=0.203 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhHHHHhhhhhhhhhhHhh
Q psy2649 469 FDAAVKEKLFCQNQAEECAEKIDLADRLV 497 (1637)
Q Consensus 469 ~~~~~~e~~~l~~~~~~~~~rl~ra~~Li 497 (1637)
|.....+...++.+...+..++..|..-+
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444333
No 289
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=56.49 E-value=4.7 Score=47.60 Aligned_cols=29 Identities=24% Similarity=0.168 Sum_probs=23.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.|-+..-+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 45567799999999999999988876543
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.40 E-value=5.2 Score=42.95 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=18.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
++.-.+|+|++|+||+||.+..+-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 445567899999999999776553
No 291
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.30 E-value=19 Score=45.66 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
.+..++++.+++.++.+++++..+++..+++.++++.++...+..+|.+.+.+++++..+++
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444455555555555555555555555444444444444443
No 292
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=56.30 E-value=4.6 Score=47.56 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=23.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.|-+..-+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 45567799999999999999988775543
No 293
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=56.11 E-value=4.6 Score=47.94 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++.-..|+|++||||+||.|+.|-+..-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 5567789999999999999998877553
No 294
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=55.83 E-value=4 Score=47.99 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.|-+..-+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCC
Confidence 45567799999999999999988775443
No 295
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=55.72 E-value=4.8 Score=47.80 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.|-+..-+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 44566789999999999999888776543
No 296
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=55.66 E-value=6.2 Score=43.52 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.1
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+-.+.|+|.+||||+|+++..+-..|+.++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 345778999999999999988876676544
No 297
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=55.47 E-value=4.9 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=19.3
Q ss_pred CCceEEEeecCCchhhHHhHHHhhc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+..++++|.+||||+|+++.-+-..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999988765543
No 298
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=55.10 E-value=71 Score=28.38 Aligned_cols=56 Identities=20% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh
Q psy2649 437 ANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDL 492 (1637)
Q Consensus 437 ~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 492 (1637)
+.+.+.+++++|+.++..=+++.+.=+.|++-+.+..+|...++..++.++.|.+-
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666556666666666666666666666666666666666543
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=54.94 E-value=4.8 Score=45.39 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=22.7
Q ss_pred cCCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.-++....|+|++||||+||.|+-+-+.
T Consensus 27 ~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3454467799999999999999988765
No 300
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=54.88 E-value=5.1 Score=47.56 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.|-+..-+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 45566799999999999999988876543
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=54.82 E-value=5.8 Score=45.96 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=44.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeee
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVII 153 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~i 153 (1637)
++.-..|+|++||||+||+|+-+-+..-. .|. ..+.++..|........++.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~-------------------------~G~--~~v~~v~qd~~~~~~t~~e~~ 141 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARW-------------------------DHH--PRVDLVTTDGFLYPNAELQRR 141 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTS-------------------------TTC--CCEEEEEGGGGBCCHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcccc-------------------------CCC--CeEEEEecCccCCcccHHHHH
Confidence 34456689999999999999887765421 011 456666666544332333322
Q ss_pred hhhhccCCCCCCCCchHHHHHHHhhh
Q psy2649 154 NDMLASGEVPDLFTDDEIENIVNNIA 179 (1637)
Q Consensus 154 n~lL~~gevp~Lf~~ee~~~i~~~~~ 179 (1637)
. ++..-..|+-+..+.+.+++..+.
T Consensus 142 ~-~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 142 N-LMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp T-CTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred H-HHHhcCCChHHHHHHHHHHHHHhC
Confidence 1 122112454455566667777666
No 302
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=54.62 E-value=5.3 Score=44.37 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=22.9
Q ss_pred cCCCC-ceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 72 EAPRG-NALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 72 ~~p~g-h~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
..+.| -.-|+|++||||+|++|+-+-+.|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 33445 46688999999999999888766643
No 303
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.56 E-value=71 Score=29.08 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2649 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLF 478 (1637)
Q Consensus 427 v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~ 478 (1637)
..-++..+.+++..+.. +++..+..+..++..+++++.+.+...+|-+.
T Consensus 12 ~~~Le~~l~e~E~~~~~---~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~ 60 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLAR---ERDTSRRLLAEKEREMAEMRARMQQQLDEYQE 60 (86)
T ss_dssp CTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777665433 33344455555555555555555544444333
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=54.48 E-value=5.3 Score=47.14 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=20.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++...+|+|++||||+|+.+.-|...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34567789999999999976666553
No 305
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.41 E-value=42 Score=33.69 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQN 481 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~ 481 (1637)
-++.++..++.++......++++.+.++.+.+++..|+-++..+..+..+++.
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444333
No 306
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.18 E-value=31 Score=30.88 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh
Q psy2649 444 ASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLA 493 (1637)
Q Consensus 444 ~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 493 (1637)
.++++.+++.+++-.+..|++|.+...+..++..+|+.++.....|+...
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666667777777777777777777777777777766543
No 307
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.78 E-value=30 Score=35.93 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 437 ANAELAAASQKLAELKAKIASLEATLQELTDK 468 (1637)
Q Consensus 437 ~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~ 468 (1637)
+..+.....++++.+.+++..++++++.++.+
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444444444444433
No 308
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=53.30 E-value=5.7 Score=43.24 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=22.4
Q ss_pred hhhhhc--CCCC-ceEEEeecCCchhhHHhHHHh
Q psy2649 67 INRIME--APRG-NALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 67 i~RvL~--~p~g-h~lLvG~~GsGr~sl~rlaa~ 97 (1637)
+++++. .|.| ..+|+|++|+||+|+++..+.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 455553 3444 567789999999999887664
No 309
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.24 E-value=68 Score=31.15 Aligned_cols=59 Identities=8% Similarity=0.206 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
..++.+.+.+..+..+-..+.-++..+...++.++..|+.-...+..++.++...+.-+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 34566666666666666666666666666666666666666665555555555444333
No 310
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=53.17 E-value=5.4 Score=50.00 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.9
Q ss_pred hhhhhhhhhc----CCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 63 HICRINRIME----APRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 63 hi~ri~RvL~----~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++.++.|--. .++....|+|.+||||+|+.|.-+-..+
T Consensus 353 eV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 353 EVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3444544432 2455778999999999999988776654
No 311
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=53.01 E-value=8.3 Score=48.87 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=28.9
Q ss_pred hhhhhhhhh--cCCCCc----eEEEeecCCchhhHHhHHHhhc---cccceEE
Q psy2649 63 HICRINRIM--EAPRGN----ALLVGVGGSGKQSLSRLSAFIS---TLEPFQI 106 (1637)
Q Consensus 63 hi~ri~RvL--~~p~gh----~lLvG~~GsGr~sl~rlaa~~~---~~~~~~i 106 (1637)
+|.|-.|.- .+++|+ ++|+|.+||||+|+++..+-.. |+.++-+
T Consensus 34 ~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 34 HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 455555553 343233 7889999999999988766554 6555543
No 312
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.00 E-value=22 Score=31.70 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy2649 442 AAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEE 485 (1637)
Q Consensus 442 ~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~ 485 (1637)
+.+.++|++.+..=..++++|..++..++.+..+...++.+++.
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555444444433
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=52.94 E-value=6 Score=42.58 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.7
Q ss_pred eEEEeecCCchhhHHhHHHhh
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
+.++|.+||||+|+++.-+-.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999997655443
No 314
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=52.92 E-value=6.5 Score=48.13 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++....|+|++||||+||.|+-+-+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 67789999999999999999988765
No 315
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=52.83 E-value=9.7 Score=41.85 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=18.1
Q ss_pred CceEEEeecCCchhhHHhHHHhhc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
--+++.|++||||+|+++..+-..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346678999999999976655444
No 316
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.72 E-value=70 Score=29.74 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=33.7
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
....++..+.+++..+.. +++..+..+..++..+++++.+.+...+|-+.|-.---..+..+..-.+|++
T Consensus 20 ~~~~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 20 ESRACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666666665444 3333445555566666666655555544443332222222233334445554
No 317
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.65 E-value=47 Score=29.10 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2649 444 ASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAE 484 (1637)
Q Consensus 444 ~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~ 484 (1637)
+.++|++.+..=..++++|..++..++++..+...++.+++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555444444443
No 318
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=52.33 E-value=5.8 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.4
Q ss_pred ceEEEeecCCchhhHHhHHHhhcc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++.++|++|+||+||.+.-+-+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999998887654
No 319
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=52.28 E-value=14 Score=40.77 Aligned_cols=47 Identities=15% Similarity=0.018 Sum_probs=32.7
Q ss_pred CceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHH
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLAS 123 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~ 123 (1637)
++++++|+.|+|||.++..++.-.+..++-+.+++. -..+|.+.+++
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~-L~~q~~~~~~~ 155 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLA-LAEQWKERLGI 155 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHH-HHHHHHHHHGG
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHH-HHHHHHHHHHh
Confidence 569999999999999988777766666666655542 12355555544
No 320
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=52.18 E-value=90 Score=29.94 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=41.8
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
.++.+..++++.+.+++..-..|.+.+.++..++++-..-+.++....+|...++..++..+..|.
T Consensus 19 D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 19 DTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455667778888888887777777777777776666555555555555555555544444444433
No 321
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=52.02 E-value=8 Score=41.85 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=23.6
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
.+.|+|..||||+|+++..+-..|+.++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 5788999999999999888777776655
No 322
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=51.83 E-value=9.7 Score=46.06 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=20.2
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS 99 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~ 99 (1637)
+.-++++|++|+||||+ ++||.++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677789999999998 77777765
No 323
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.83 E-value=13 Score=42.76 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=20.9
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc--cccce
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS--TLEPF 104 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~ 104 (1637)
+.-.+++|++|+||+|+ .+||.++. +.++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 34567899999999988 55666654 34444
No 324
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=51.75 E-value=7.2 Score=44.39 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=20.7
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+.|.|.+||||+|+++.-+- .|+.++
T Consensus 78 I~I~G~~GSGKSTva~~La~-lg~~~i 103 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN-LGAYII 103 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH-HTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEE
Confidence 67789999999999988774 566554
No 325
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=51.44 E-value=6 Score=48.92 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=27.9
Q ss_pred hhhhhhhhhcCCC----CceEEEeecCCchhhHHhHHHhhccc
Q psy2649 63 HICRINRIMEAPR----GNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 63 hi~ri~RvL~~p~----gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
+|.++-|-..+|+ ..+.|.|.+||||+|++|.-|--.+.
T Consensus 379 eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 379 EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4555555555553 34778899999999998877776664
No 326
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.99 E-value=6.7 Score=42.76 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=18.2
Q ss_pred eEEEeecCCchhhHHhHHHhhccc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++|+|++||||.|.++.-|--.++
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 467899999999998765544443
No 327
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=50.90 E-value=7.5 Score=44.61 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHH-hHHHhhc---cccceEE
Q psy2649 74 PRGNALLVGVGGSGKQSLS-RLSAFIS---TLEPFQI 106 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~-rlaa~~~---~~~~~~i 106 (1637)
+++-.+++|++|+||+|++ .||.++. |.++.-+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4567888999999999985 5555553 4455433
No 328
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=50.74 E-value=4.6 Score=47.64 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
++.-..|+|++||||+||.|+.|-+..-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4556779999999999999998877543
No 329
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=50.70 E-value=6.8 Score=46.81 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=22.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++.-..|+|++||||+||.|+.+-+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 556778899999999999999887653
No 330
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=50.18 E-value=17 Score=50.47 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=26.1
Q ss_pred hhhhhhhhhhcC---CCCceEEEeecCCchhhHHhHHHhh
Q psy2649 62 SHICRINRIMEA---PRGNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 62 ~hi~ri~RvL~~---p~gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
..+.+|.+.|.. ..+-+.|+|+||.|||+|++-+++-
T Consensus 131 ~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 131 KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 345566666643 2345678999999999999776654
No 331
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.17 E-value=53 Score=26.85 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 447 KLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 447 ~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
++.++..++..|..++..|+.+...+..+.+..+.|......||
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555444444444444444444
No 332
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=50.13 E-value=13 Score=40.38 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=17.6
Q ss_pred CceEEEeecCCchhhHHhH-HHhhc
Q psy2649 76 GNALLVGVGGSGKQSLSRL-SAFIS 99 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rl-aa~~~ 99 (1637)
--+++.|.+||||+|+++. +.++.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456679999999999755 45443
No 333
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=50.04 E-value=11 Score=41.41 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=31.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhccc
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKN 132 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~ 132 (1637)
-+.+.|..||||+|+++..|--.|+.++ | .+.++.+..+.|+.-
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~-----------d-~~~~~~~a~~~g~~~ 59 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFY-----------D-DDILKLASEKSAVGE 59 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEE-----------C-HHHHHHHHHCC----
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEE-----------c-HHHHHHHHHHcCCCH
Confidence 3556799999999999988887787765 3 455777777777654
No 334
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.82 E-value=12 Score=41.16 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=24.1
Q ss_pred hhhhhhc--CCCC-ceEEEeecCCchhhH-HhHHHhhc
Q psy2649 66 RINRIME--APRG-NALLVGVGGSGKQSL-SRLSAFIS 99 (1637)
Q Consensus 66 ri~RvL~--~p~g-h~lLvG~~GsGr~sl-~rlaa~~~ 99 (1637)
.++++|. .|.| -.+++|.+|+||+|+ ..+++..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566664 2444 567789999999999 55776654
No 335
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=49.43 E-value=6.9 Score=46.18 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++.-..|+|++||||+||.|+.+-+..-+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 44466789999999999999998876543
No 336
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=49.27 E-value=7.8 Score=40.56 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=22.4
Q ss_pred hhhhhhcCCCCceEEEeecCCchhhHHh
Q psy2649 66 RINRIMEAPRGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 66 ri~RvL~~p~gh~lLvG~~GsGr~sl~r 93 (1637)
++-+.+..+.-+++++|.+|+||+||.+
T Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKssl~~ 34 (187)
T 1zj6_A 7 RIWRLFNHQEHKVIIVGLDNAGKTTILY 34 (187)
T ss_dssp HHHHHHTTSCEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHH
Confidence 3444456778899999999999999964
No 337
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=49.22 E-value=61 Score=27.12 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 439 AELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 439 ~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
......+..+............++..++.++++..+..+....++..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666666666555444
No 338
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=49.00 E-value=23 Score=43.73 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc--cccceEEE
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS--TLEPFQIQ 107 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~~i~ 107 (1637)
...++++|.+|+||||+ .+||+++. |.++.-+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45788899999999998 78887776 55655443
No 339
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=48.77 E-value=41 Score=31.40 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 447 KLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 447 ~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
++.-+++.+.+.++.+.+++.++.+..++.+.++......+.++.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777766666666555555444443
No 340
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.73 E-value=38 Score=31.43 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy2649 458 LEATLQEL 465 (1637)
Q Consensus 458 le~~l~~l 465 (1637)
++..|+.|
T Consensus 52 ie~ElEeL 59 (97)
T 2eqb_B 52 LNKEVEDL 59 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 341
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.60 E-value=77 Score=33.26 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2649 432 KALAAANAELAAASQK 447 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~ 447 (1637)
.++.+++.++...++.
T Consensus 24 q~~~~le~El~EFqes 39 (189)
T 2v71_A 24 QSFQEARDELVEFQEG 39 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=48.36 E-value=5.4 Score=41.74 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=23.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhcccc---ceEEEec
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLE---PFQIQLK 109 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~---~~~i~~~ 109 (1637)
...++|.+||||+||+++-+-...-+ .=.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 46789999999999988877664433 4444433
No 343
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.17 E-value=17 Score=36.07 Aligned_cols=42 Identities=10% Similarity=0.248 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDA 471 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~ 471 (1637)
.+.++.++...+...+.++...+.....++..|.+.+..|+.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554443
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=48.08 E-value=6.9 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=19.3
Q ss_pred CceEEEeecCCchhhHHhHHHhh
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.-..++|..||||+|++++.+-.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35678899999999999887766
No 345
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=48.07 E-value=8.3 Score=46.41 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=24.8
Q ss_pred hhcCCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 70 IMEAPRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 70 vL~~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.....+|...|+|++|+||+||.+.-+-+.
T Consensus 64 ~~~~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 64 EIDSSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred hcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 334577899999999999999999877654
No 346
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.90 E-value=64 Score=33.86 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 439 AELAAASQKLAELKAKIASLEATLQELTDKFDAA 472 (1637)
Q Consensus 439 ~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~ 472 (1637)
.++..++.+...++.++..+...++.++..|+.+
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444
No 347
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=47.87 E-value=8.2 Score=40.04 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.3
Q ss_pred CCCCceEEEeecCCchhhHHh
Q psy2649 73 APRGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~r 93 (1637)
.+.-+++++|.+|+||+||..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILY 36 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHH
Confidence 567789999999999999964
No 348
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=47.86 E-value=15 Score=40.50 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.3
Q ss_pred CceEEEeecCCchhhHHhHHH
Q psy2649 76 GNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa 96 (1637)
--+++.|.+||||+|+++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346678999999999976544
No 349
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=47.84 E-value=7.9 Score=45.10 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=19.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
++.-..|+|++|+||+|+.+.-|...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456779999999999976666543
No 350
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=47.83 E-value=6.9 Score=46.38 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.0
Q ss_pred CCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
+....|+|.+||||+||.|+-+-+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568899999999999999988777543
No 351
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=47.43 E-value=7.6 Score=41.33 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.0
Q ss_pred cCCCCceEEEeecCCchhhHHh
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~r 93 (1637)
..+.+.++++|.+|+||+||.+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~ 43 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLH 43 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHH
Confidence 3566899999999999999965
No 352
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=47.41 E-value=8.8 Score=47.63 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
++++.+++|++||||+|+.+..+.+..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 566799999999999999887766554
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=47.15 E-value=20 Score=38.36 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.5
Q ss_pred CCCceEEEeecCCchhhHHhH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rl 94 (1637)
..-+++++|.+|+||+||..-
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~ 31 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTL 31 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 346899999999999999643
No 354
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=47.04 E-value=7.2 Score=41.15 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=17.2
Q ss_pred cCCCCceEEEeecCCchhhHHhH
Q psy2649 72 EAPRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl~rl 94 (1637)
..+..+++++|.+|+||+||.+-
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~ 42 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHM 42 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHH
T ss_pred cCCccEEEEECCCCCCHHHHHHH
Confidence 35678999999999999999653
No 355
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=46.79 E-value=1.1e+02 Score=29.65 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHh
Q psy2649 436 AANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQ 515 (1637)
Q Consensus 436 ~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~ 515 (1637)
.++..++..+.+.+.....-..++..+..++...+..+--+..|+.+++..+..+.--++ -..+.+..+.
T Consensus 45 n~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk----------~heeEl~eLq 114 (119)
T 3ol1_A 45 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK----------LHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 333444444444444555556677778888888888877777777777776666554322 3445555555
Q ss_pred hcc
Q psy2649 516 QSA 518 (1637)
Q Consensus 516 ~~~ 518 (1637)
.++
T Consensus 115 ~qi 117 (119)
T 3ol1_A 115 AQI 117 (119)
T ss_dssp SCC
T ss_pred HHh
Confidence 443
No 356
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=46.74 E-value=48 Score=35.73 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=18.7
Q ss_pred CCceEEEeecCCchhhHHhHHHh
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
+.+++++++.||||+.+.-+.+.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l~~~ 79 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLMPGF 79 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHH
Confidence 57899999999999987665543
No 357
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=46.69 E-value=13 Score=40.87 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=13.6
Q ss_pred ceEEEeecCCchhhHHhHH-Hhh
Q psy2649 77 NALLVGVGGSGKQSLSRLS-AFI 98 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rla-a~~ 98 (1637)
-+++.|++||||+|+++.. .++
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 3566799999999997654 444
No 358
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=46.66 E-value=72 Score=32.73 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=6.1
Q ss_pred ecchhHHHHHHHHHHH
Q psy2649 426 FVEPKRKALAAANAEL 441 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l 441 (1637)
+|.-++.++.+++..+
T Consensus 7 Ki~~LekQL~E~n~kL 22 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLL 22 (168)
T ss_dssp ---CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444433
No 359
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.35 E-value=14 Score=36.71 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFD 470 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~ 470 (1637)
++.++...+...+.+++..+..-..++..|.+.+..|+
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444333
No 360
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=46.23 E-value=17 Score=42.62 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=26.1
Q ss_pred hhhhhhc--CCCCc-eEEEeecCCchhhHHhHHHhhc
Q psy2649 66 RINRIME--APRGN-ALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 66 ri~RvL~--~p~gh-~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
-++++|. .|.|. ..|+|++||||+||++..|...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577775 35555 5568999999999999888775
No 361
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=45.75 E-value=9.8 Score=43.45 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred cCCCC-ceEEEeecCCchhhHHhHHHhh
Q psy2649 72 EAPRG-NALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 72 ~~p~g-h~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
..+.| -.+|+|.+|+||+|+++..|..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34445 5667899999999998866654
No 362
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=45.70 E-value=8.6 Score=38.97 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=42.0
Q ss_pred eeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q psy2649 420 FYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 420 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 490 (1637)
|..+.+++.=....++.++.....+..+...++..|..+...+..|...-+++.+.-...+.++...+.+|
T Consensus 75 yeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 75 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444555566666666666666666666666666666666666666666555555666555554443
No 363
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.69 E-value=98 Score=27.01 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 449 AELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 449 ~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
+.+++.+.+++.++..|+...+.+..|.+.|..++..+...+.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888888888888888888888877776654
No 364
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=45.47 E-value=23 Score=41.08 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=23.6
Q ss_pred hhhhhhhc--CCCCc-eEEEeecCCchhhHHhHHHh
Q psy2649 65 CRINRIME--APRGN-ALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 65 ~ri~RvL~--~p~gh-~lLvG~~GsGr~sl~rlaa~ 97 (1637)
..++++|. .|.|. .++.|.+||||++++.-.|.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 45678884 45555 56689999999999765443
No 365
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=45.40 E-value=89 Score=31.77 Aligned_cols=20 Identities=0% Similarity=0.059 Sum_probs=8.7
Q ss_pred HHHHhhhHHHHhhhhhhhhh
Q psy2649 474 KEKLFCQNQAEECAEKIDLA 493 (1637)
Q Consensus 474 ~e~~~l~~~~~~~~~rl~ra 493 (1637)
+...+|+.++..++.++..+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 366
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=45.30 E-value=8.7 Score=48.70 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
||....|+|++||||+||.|+-+-+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCC
Confidence 5667889999999999999998877543
No 367
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=45.30 E-value=1.1e+02 Score=28.48 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECA 487 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 487 (1637)
..++..++.+=..+.++|.+++.+-..+...|..++.+......+-.+.-.+.....
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~ 66 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFK 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433333333333333
No 368
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.12 E-value=29 Score=41.49 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 433 ALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
++++++.+++..+++.+++++++++++++++++++++.+...++.+|-.++++.+.++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIr 62 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR 62 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 34555666666666666666666666666666666666666666666555555554443
No 369
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=44.68 E-value=36 Score=40.44 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=55.8
Q ss_pred ccCCChHHHHHHHHHHHHhHHH--HH----HH-----hhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhH
Q psy2649 26 MKMPDWATLHKILSETMTSYNE--IV----AS-----MNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 26 ~~v~~~~~l~~~l~~~l~~yn~--~~----~~-----~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rl 94 (1637)
+|+ +.++|...+...+....- +. .. -.++.-...+..+.+..+-+.....++++.|.+|+||+.++|.
T Consensus 101 KP~-~~~~L~~~i~~~l~~~~l~~~~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ 179 (387)
T 1ny5_A 101 KPC-MLEEIELTINKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARL 179 (387)
T ss_dssp ESC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHH
Confidence 444 678888888776653321 11 01 1234445677777777777888899999999999999999998
Q ss_pred HHhhcc---ccceEEEe
Q psy2649 95 SAFIST---LEPFQIQL 108 (1637)
Q Consensus 95 aa~~~~---~~~~~i~~ 108 (1637)
...... ..++.++.
T Consensus 180 ih~~s~r~~~~fv~v~~ 196 (387)
T 1ny5_A 180 IHKLSDRSKEPFVALNV 196 (387)
T ss_dssp HHHHSTTTTSCEEEEET
T ss_pred HHHhcCCCCCCeEEEec
Confidence 877764 34555543
No 370
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=44.55 E-value=9.4 Score=41.03 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=24.1
Q ss_pred ceEEEeecCCchhhHHhHHHhhccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
-+.+.|..||||+|++|..|--.|+.++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 3567899999999999988888888776
No 371
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=44.53 E-value=9.8 Score=43.87 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.5
Q ss_pred CceEEEeecCCchhhHHhHHHhhcc
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
.-+.|+|.+||||+|++++-+-+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3566789999999999998877654
No 372
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=44.13 E-value=13 Score=37.69 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=15.4
Q ss_pred ceEEEeecCCchhhHHhH
Q psy2649 77 NALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rl 94 (1637)
+++++|.+|+||+||..-
T Consensus 5 ~i~v~G~~~~GKssli~~ 22 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVR 22 (170)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 578999999999999543
No 373
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.02 E-value=1.4e+02 Score=26.90 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQ 482 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~ 482 (1637)
.++..++..+......+-.+...|..++..|+.|+...++...+.+.+++.
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445555544433334445555556666666666666666655555555443
No 374
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=43.89 E-value=9 Score=48.54 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.0
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
||....|+|++||||+||.|+-+-+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 566788999999999999999877654
No 375
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=43.66 E-value=23 Score=42.74 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=21.9
Q ss_pred CCCceEEEeecCCchhhH-HhHHHhhc--cccce
Q psy2649 74 PRGNALLVGVGGSGKQSL-SRLSAFIS--TLEPF 104 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~ 104 (1637)
++...+++|++|+||+|+ ..||.++. +.++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 445577789999999998 56666664 34444
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=43.40 E-value=12 Score=41.65 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=20.1
Q ss_pred eEEEeecCCchhhHHhHHHhhcccc
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
+.|.|.+||||+|+++.-+-..++.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhh
Confidence 4567999999999999777766655
No 377
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=43.30 E-value=11 Score=39.67 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.5
Q ss_pred CCCceEEEeecCCchhhHHhH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rl 94 (1637)
+.-.++++|.+|+||+|+..-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 446789999999999999643
No 378
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=43.30 E-value=9.4 Score=43.66 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=20.1
Q ss_pred ceEEEeecCCchhhHHhHHHh-hccccce
Q psy2649 77 NALLVGVGGSGKQSLSRLSAF-ISTLEPF 104 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~-~~~~~~~ 104 (1637)
-++++|++||||+|+++.-+- ..++.++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 367899999999999876554 2354433
No 379
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=42.98 E-value=9.2 Score=48.62 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
||....|+|++||||+||.++-+-+..-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p 396 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDP 396 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5667889999999999999998877543
No 380
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=42.85 E-value=10 Score=47.47 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.||-...|+|++||||+||.|+.+-+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467788899999999999999988764
No 381
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=42.71 E-value=11 Score=42.67 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=18.7
Q ss_pred CCCceEEEeecCCchhhHHhHHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~ 97 (1637)
++.-.+|+|++||||+|+++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344567789999999999876664
No 382
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=42.61 E-value=1.3e+02 Score=26.41 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=35.0
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAE 484 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~ 484 (1637)
++++.+.+-..++..+...+.+|+..+.+-..+...+..+.+.++-.+.|...+...+.
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666666666666666666666555555443
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=42.56 E-value=11 Score=39.82 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.2
Q ss_pred ceEEEeecCCchhhHHhHHHhh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.+.|+|.+|+||+||.+.-+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4689999999999998876543
No 384
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.34 E-value=1.5e+02 Score=26.41 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2649 450 ELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAE 484 (1637)
Q Consensus 450 ~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~ 484 (1637)
..+......+.+|.+.+....+...|.++++.+++
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333333334444444333
No 385
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=42.32 E-value=86 Score=25.01 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2649 446 QKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQ 480 (1637)
Q Consensus 446 ~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~ 480 (1637)
.++.+.++....+-.++.+|+...++..+|+++|.
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 34444445555555566666666666555555544
No 386
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=42.28 E-value=17 Score=42.98 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=55.9
Q ss_pred ccCCChHHHHHHHHHHHHhHHHHH---HHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 26 MKMPDWATLHKILSETMTSYNEIV---ASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 26 ~~v~~~~~l~~~l~~~l~~yn~~~---~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
+|+ +.++|...+...+..+.... ....++--...+..+.+..+.+.....++++.|.+|+||..++|......+-.
T Consensus 101 KP~-~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~ 179 (368)
T 3dzd_A 101 KPF-SVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK 179 (368)
T ss_dssp SSC-CHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCC-CHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc
Confidence 455 67888888888877654211 11233333445555666666666778899999999999999999888776543
Q ss_pred --ceEEEec
Q psy2649 103 --PFQIQLK 109 (1637)
Q Consensus 103 --~~~i~~~ 109 (1637)
++.++..
T Consensus 180 ~~fv~vnc~ 188 (368)
T 3dzd_A 180 GAFVDLNCA 188 (368)
T ss_dssp SCEEEEESS
T ss_pred CCcEEEEcc
Confidence 5555543
No 387
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.26 E-value=1.5e+02 Score=27.68 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 430 KRKALAAANAELAAASQKLAELKA 453 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~ 453 (1637)
++..+++.++.+.+.+.++.++..
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~r 58 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNK 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 388
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=42.10 E-value=12 Score=45.31 Aligned_cols=31 Identities=42% Similarity=0.707 Sum_probs=23.7
Q ss_pred CceEEEeecCCchhhH-HhHHHhhc--cccceEE
Q psy2649 76 GNALLVGVGGSGKQSL-SRLSAFIS--TLEPFQI 106 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~~i 106 (1637)
+.++++|.+|+||+|+ .+||.++. |.++.-+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5789999999999997 77887765 3455433
No 389
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=42.06 E-value=9.5 Score=40.72 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.6
Q ss_pred hcCCC-CceEEEeecCCchhhHHhHHH
Q psy2649 71 MEAPR-GNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 71 L~~p~-gh~lLvG~~GsGr~sl~rlaa 96 (1637)
+..+. -.+.|+|.+|+||+||.+.-+
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 44444 458899999999999987543
No 390
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=42.01 E-value=8.5 Score=38.98 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.7
Q ss_pred CCCCceEEEeecCCchhhHHhH
Q psy2649 73 APRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rl 94 (1637)
++.-+++++|.+|+||+||.+-
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~ 23 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQ 23 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHH
Confidence 3455789999999999999543
No 391
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=41.98 E-value=22 Score=38.52 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=26.7
Q ss_pred ceEEEeecCCchhhHHhH-HHhhccccceEEEeccccCcchhhhHHHHHHH
Q psy2649 77 NALLVGVGGSGKQSLSRL-SAFISTLEPFQIQLKKNYGIPDLKIDLASLYL 126 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rl-aa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~ 126 (1637)
-+++.|.+||||+|++++ +.++...-+-.+..++.=+-...-+.+++++.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 356679999999999654 55553322112222222122234455666554
No 392
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=41.98 E-value=17 Score=44.22 Aligned_cols=42 Identities=26% Similarity=0.330 Sum_probs=31.0
Q ss_pred hhhhhcCCCC-ceEEEeecCCchhhHHhHHHhhccccceEEEe
Q psy2649 67 INRIMEAPRG-NALLVGVGGSGKQSLSRLSAFISTLEPFQIQL 108 (1637)
Q Consensus 67 i~RvL~~p~g-h~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~ 108 (1637)
|+-++.-+.| -..|+|.+|+||+||.++-+.....+.-.+.+
T Consensus 148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred EeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 3444555444 66789999999999999999887766555543
No 393
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.88 E-value=1.2e+02 Score=26.99 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=39.2
Q ss_pred EecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2649 425 TFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAE 484 (1637)
Q Consensus 425 ~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~ 484 (1637)
.++++.+.+-..++..+...+.+|+..+.+-..+...+..+.+.++-.+.|...+...+.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555556666666666677777766666666777777777777777666666655554
No 394
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.69 E-value=51 Score=44.61 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=8.0
Q ss_pred eEEEeecCCchhhHHhH
Q psy2649 78 ALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rl 94 (1637)
+++.|.+|+|||..||+
T Consensus 159 IiisGESGAGKTe~~K~ 175 (1080)
T 2dfs_A 159 IIVSGESGAGKTVSAKY 175 (1080)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEcCCCCCCccchHHH
Confidence 33345555555544443
No 395
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=41.66 E-value=12 Score=39.51 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.3
Q ss_pred hhcCCCCceEEEeecCCchhhHHhH
Q psy2649 70 IMEAPRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 70 vL~~p~gh~lLvG~~GsGr~sl~rl 94 (1637)
.+..+.-.++++|.+|+||+||..-
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~ 48 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYK 48 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHH
T ss_pred hccCCccEEEEECCCCCCHHHHHHH
Confidence 3445667899999999999999663
No 396
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=41.61 E-value=13 Score=47.69 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=22.4
Q ss_pred cCCCCceEEEeecCCchhhH-HhHHHhhc
Q psy2649 72 EAPRGNALLVGVGGSGKQSL-SRLSAFIS 99 (1637)
Q Consensus 72 ~~p~gh~lLvG~~GsGr~sl-~rlaa~~~ 99 (1637)
..+.|+++++|.+|||||++ +.-++++.
T Consensus 19 ~~~~~~~lV~a~aGsGKT~~l~~ri~~l~ 47 (647)
T 3lfu_A 19 AAPRSNLLVLAGAGSGKTRVLVHRIAWLM 47 (647)
T ss_dssp TCCSSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 35789999999999999986 55556554
No 397
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=41.18 E-value=10 Score=48.13 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=23.9
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
||....++|++||||+||.++-+-+..-+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 56677899999999999999988775443
No 398
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.16 E-value=43 Score=40.18 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=69.9
Q ss_pred cchhhhhhheeeeEEEEecchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----H
Q psy2649 409 GLCAWVINIITFYNVWTFVEPKRKALAAANAELA-AASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQ----A 483 (1637)
Q Consensus 409 ~L~~WV~Ai~~Y~~v~~~v~P~~~~l~~~e~~l~-~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~----~ 483 (1637)
....|+..+++|.+- ++.--. ..+..-.++. +.+.+++.++.+|+..-.+|+.||..++++..++++||.. +
T Consensus 82 dseqy~k~~~E~Lr~--rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 82 DSHSLTTNIMEILRG--DFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHTTSS--HHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777776665431 111111 1111222222 4555566666777666688888888888888888888864 4
Q ss_pred HhhhhhhhhhhHhhhcccccccchHHHHHHHhhccccCCcceeeehhhhhhhcchhh
Q psy2649 484 EECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTR 540 (1637)
Q Consensus 484 ~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~~l~gd~lL~aa~i~Y~G~~~~ 540 (1637)
..|+.-+.|+ +. +.-=.+..+.+++++.+++.--|+-.--+.|+..+..
T Consensus 159 rsCKgsCsr~------~~--~~vd~~sY~~~QKQLeQv~a~dL~p~~~~q~Lp~lKm 207 (562)
T 3ghg_A 159 RSCRGSCSRA------LA--REVDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLIKM 207 (562)
T ss_dssp HHGGGTBSCC------CC--CCCCHHHHHHHHHHHHHHHTTCCCCSCCCC-------
T ss_pred Hhccccccch------he--eecchHHHHHHHHHHHHHhhcccCCccccccchhccc
Confidence 4566556555 22 2223467778888888888888887777778776544
No 399
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=41.13 E-value=8.8 Score=39.32 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.8
Q ss_pred CceEEEeecCCchhhHHhHH
Q psy2649 76 GNALLVGVGGSGKQSLSRLS 95 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rla 95 (1637)
..++++|.+|+||+||.+--
T Consensus 4 ~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999996543
No 400
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=41.02 E-value=11 Score=45.46 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=20.6
Q ss_pred cCCCCc---eEEEeecCCchhhHHhHHHhh
Q psy2649 72 EAPRGN---ALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 72 ~~p~gh---~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
..+.|- ..|+|.+|+||+||.+.-+-.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 334454 689999999999999986654
No 401
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=40.74 E-value=13 Score=46.60 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=24.5
Q ss_pred hhhhhhhhcCCCCc----eEEEeecCCchhhHHhHHHhh
Q psy2649 64 ICRINRIMEAPRGN----ALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 64 i~ri~RvL~~p~gh----~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
|.++-|-...|+|+ +++.|.+||||+|+++..+-.
T Consensus 357 V~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 357 VAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp HHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHH
Confidence 45555555555443 567899999999998876654
No 402
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=40.57 E-value=15 Score=44.45 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=25.4
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc---cccceEEE
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS---TLEPFQIQ 107 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~---~~~~~~i~ 107 (1637)
...++++|.+|+||||+ ++||+++. |.++.=+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34677889999999988 88998886 55665443
No 403
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=40.56 E-value=76 Score=30.31 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEAT-----------LQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~-----------l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
.+...+.++..+..++.+|.+..+.-+++++. |..|+.....+.+....|+.....++.. +..=+.
T Consensus 4 t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~ 80 (112)
T 1x79_B 4 TRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34445555555555555555555444444444 4444444444444444444444444332 233344
Q ss_pred cccccccchHHHHHHHhhccccCCcceee
Q psy2649 499 GLASENVRWKDSVLGLQQSALTLPGDILL 527 (1637)
Q Consensus 499 ~L~~E~~rW~~~~~~l~~~~~~l~gd~lL 527 (1637)
-|...+++-...+..++.....|.|--.+
T Consensus 81 ~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~~ 109 (112)
T 1x79_B 81 VLMQSREQVSEELVRLQKDNDSLQGKHSL 109 (112)
T ss_dssp HHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 56666677777777777777777765433
No 404
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=40.35 E-value=11 Score=39.55 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.4
Q ss_pred CCCCceEEEeecCCchhhHHh
Q psy2649 73 APRGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~r 93 (1637)
.+.-+++++|.+|+||+||..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~ 40 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILY 40 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHH
Confidence 567789999999999999864
No 405
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=40.25 E-value=9 Score=45.33 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.9
Q ss_pred CCCceEEEeecCCchhhHHhH-HHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRL-SAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rl-aa~~~ 99 (1637)
+|+.++++|.+|+||++|.++ +.+++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 467889999999999999874 44553
No 406
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.16 E-value=1.2e+02 Score=27.67 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q psy2649 455 IASLEATLQELTDKFDAAVKEKLFCQNQAEECAEK 489 (1637)
Q Consensus 455 l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 489 (1637)
-..+|..+..|+...+.+.-.+..|+.+++..+..
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555544444444444444433
No 407
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=40.09 E-value=11 Score=39.41 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=18.4
Q ss_pred CCceEEEeecCCchhhHHhHHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
.-+++++|.+|+||+||.++..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999987554
No 408
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=40.03 E-value=9.8 Score=44.97 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=18.9
Q ss_pred CceEEEeecCCchhhHHhHHHhh
Q psy2649 76 GNALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
=.+||+|.|||||+|++|--..+
T Consensus 34 ~killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 36789999999999999876443
No 409
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=39.98 E-value=11 Score=39.97 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.4
Q ss_pred ceEEEeecCCchhhHHhHHHhh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.++++|.+|+||+||.+.-+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999998776543
No 410
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=39.98 E-value=1.6e+02 Score=25.21 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 440 ELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 440 ~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
.+...+++|..+..++..+++.+.--.+.++...-|...+--+-...+.|+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555445555555543
No 411
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=39.95 E-value=1.5e+02 Score=26.42 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEE 485 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~ 485 (1637)
+++...+.+++..+.--.+++..=..+++-+..|+.+-++.....+.++.+.++
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333344444444444444444444444444333
No 412
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=39.83 E-value=90 Score=29.05 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHhhhhhh
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAA-----VKEKLFCQNQAEECAEKI 490 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~-----~~e~~~l~~~~~~~~~rl 490 (1637)
....++++++++..-+.+|...+++|++.++..+.--++..+. ..+...++.++.+.+..|
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888777654444443 334445555555554444
No 413
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=39.76 E-value=11 Score=38.03 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=15.1
Q ss_pred ceEEEeecCCchhhHHh
Q psy2649 77 NALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~r 93 (1637)
+++++|.+|+||+|+.+
T Consensus 5 ~i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999954
No 414
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=39.66 E-value=23 Score=41.47 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=24.4
Q ss_pred hhhhhhhc--CCCCce-EEEeecCCchhhHHhHHHh
Q psy2649 65 CRINRIME--APRGNA-LLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 65 ~ri~RvL~--~p~gh~-lLvG~~GsGr~sl~rlaa~ 97 (1637)
..++++|. .|.|.+ ++.|.+||||++++.-.|.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45788884 566665 6689999999999765444
No 415
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=39.66 E-value=13 Score=38.70 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=22.3
Q ss_pred ceEEEeecCCchhhH-HhHHHhhc--cccceEEE
Q psy2649 77 NALLVGVGGSGKQSL-SRLSAFIS--TLEPFQIQ 107 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl-~rlaa~~~--~~~~~~i~ 107 (1637)
-..++|.+||||+|+ .+|+..+. |+++.-+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357889999999999 56777654 45555444
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=39.29 E-value=20 Score=42.04 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=27.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccccceEEE
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQ 107 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~ 107 (1637)
+|+-..|+|.+|+||+||.+.-+.....+.-.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 4557789999999999999999998876655443
No 417
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=39.13 E-value=8.8 Score=46.23 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.9
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
|..+.|-..|+|.+|+||+||.+..+++.+..
T Consensus 56 l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~~ 87 (415)
T 4aby_A 56 LELGGGFCAFTGETGAGKSIIVDALGLLLGGR 87 (415)
T ss_dssp EECCSSEEEEEESHHHHHHHHTHHHHHHTTCC
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34455699999999999999999999998753
No 418
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=39.09 E-value=11 Score=38.38 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.5
Q ss_pred ceEEEeecCCchhhHHhH
Q psy2649 77 NALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rl 94 (1637)
+++++|.+|+||+||.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~ 24 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQR 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 578999999999999653
No 419
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=38.95 E-value=13 Score=38.86 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=17.7
Q ss_pred CCCceEEEeecCCchhhHHhH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rl 94 (1637)
..-.++++|.+|+||+||.+-
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~ 35 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQ 35 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456799999999999999654
No 420
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=38.90 E-value=12 Score=39.26 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=18.6
Q ss_pred CCCceEEEeecCCchhhHH-hHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLS-RLSA 96 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~-rlaa 96 (1637)
+.=.++++|.+|+||+||. ||..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 3447899999999999998 5654
No 421
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=38.81 E-value=93 Score=28.97 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=30.6
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELK-------------------AKIASLEATLQELTDKFDAAVK 474 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~-------------------~~l~~le~~l~~l~~~~~~~~~ 474 (1637)
.++-+++++...|..|..|+++|+... ..+..++.+|++|+..+.+..+
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776544 3344566666666666655544
No 422
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=38.80 E-value=1.8e+02 Score=24.97 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q psy2649 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECA 487 (1637)
Q Consensus 430 ~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 487 (1637)
++..+..+++++.....+...+++.++--.+..+.|.+++=...-|-.-|++.+..++
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666666666666666666666666666666665544
No 423
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=38.79 E-value=1.3e+02 Score=26.61 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy2649 438 NAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEE 485 (1637)
Q Consensus 438 e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~ 485 (1637)
+.+.+..+..+...+.+|..+...++....+|++...-|-.|+.++..
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777777777777777767777666643
No 424
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.73 E-value=90 Score=23.45 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 428 EPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDK 468 (1637)
Q Consensus 428 ~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~ 468 (1637)
+.++.+++.++.+-+....+--.+++-++-++++++.|+..
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444444444455555566666655554
No 425
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=38.47 E-value=11 Score=39.26 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=18.3
Q ss_pred CCCCceEEEeecCCchhhHHhH
Q psy2649 73 APRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rl 94 (1637)
.+.-+++++|.+|+||+||..-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~ 37 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKK 37 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHH
Confidence 5667899999999999999653
No 426
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=38.44 E-value=10 Score=48.07 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTL 101 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~ 101 (1637)
||....++|++||||+||.++-+-+..-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 5567779999999999999987766543
No 427
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=38.38 E-value=12 Score=47.37 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
.+|....|+|++||||+||.|+.+-+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 466788899999999999999988764
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=38.36 E-value=11 Score=39.34 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=16.8
Q ss_pred ceEEEeecCCchhhHHhHHH
Q psy2649 77 NALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa 96 (1637)
.++++|.+|+||+||.+.-+
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999976544
No 429
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=38.34 E-value=11 Score=38.86 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=18.4
Q ss_pred CCCceEEEeecCCchhhHHhHHH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSA 96 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa 96 (1637)
++-.++++|.+|+||+||.+.-+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 55678999999999999976544
No 430
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=38.32 E-value=79 Score=25.86 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhh
Q psy2649 453 AKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLV 497 (1637)
Q Consensus 453 ~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li 497 (1637)
.++.+|..+++.|..+.+.+..+...+..+++..+..-.||..=|
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777777777777777777777777765533
No 431
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.08 E-value=1.5e+02 Score=29.16 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=10.9
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 426 FVEPKRKALAAANAELAAASQKLAELK 452 (1637)
Q Consensus 426 ~v~P~~~~l~~~e~~l~~~~~~l~~~~ 452 (1637)
++.-++..+..++.++...+..-..++
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344444444444444444433333333
No 432
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=37.92 E-value=12 Score=37.96 Aligned_cols=17 Identities=47% Similarity=0.829 Sum_probs=15.1
Q ss_pred ceEEEeecCCchhhHHh
Q psy2649 77 NALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~r 93 (1637)
.++++|.+|+||+||.+
T Consensus 4 ki~~vG~~~~GKSsli~ 20 (166)
T 3q72_A 4 KVLLLGAPGVGKSALAR 20 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999965
No 433
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=37.91 E-value=31 Score=40.54 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=29.8
Q ss_pred hhhhhhhhc---CCCCce-EEEeecCCchhhHHhHHHhh---ccccceEEE
Q psy2649 64 ICRINRIME---APRGNA-LLVGVGGSGKQSLSRLSAFI---STLEPFQIQ 107 (1637)
Q Consensus 64 i~ri~RvL~---~p~gh~-lLvG~~GsGr~sl~rlaa~~---~~~~~~~i~ 107 (1637)
+.-++|+|. .|.|.+ ++.|++||||+||+.-.+.. .+..+.-+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 456799997 456654 55799999999997655543 234454443
No 434
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=37.76 E-value=12 Score=37.79 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.8
Q ss_pred ceEEEeecCCchhhHHh
Q psy2649 77 NALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~r 93 (1637)
.++++|.+|+||+|+.+
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFN 19 (161)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999954
No 435
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=37.70 E-value=12 Score=41.21 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=23.1
Q ss_pred hhhhhhhc--CCCCceE-EEeecCCchhhHHh-HHH
Q psy2649 65 CRINRIME--APRGNAL-LVGVGGSGKQSLSR-LSA 96 (1637)
Q Consensus 65 ~ri~RvL~--~p~gh~l-LvG~~GsGr~sl~r-laa 96 (1637)
..++++|. .|.|.+. +.|.+|+||++++. +|+
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34688886 5667664 56999999999963 443
No 436
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=37.65 E-value=22 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.1
Q ss_pred CCCceEEEeecCCchhhHHhH
Q psy2649 74 PRGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rl 94 (1637)
++...+|+|++||||+||.+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 455677899999999999998
No 437
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=37.60 E-value=26 Score=37.37 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=25.6
Q ss_pred EEeecCCchhhHHhH-HHhhc--cccceEEEeccccCcchhhhHHHHHHH
Q psy2649 80 LVGVGGSGKQSLSRL-SAFIS--TLEPFQIQLKKNYGIPDLKIDLASLYL 126 (1637)
Q Consensus 80 LvG~~GsGr~sl~rl-aa~~~--~~~~~~i~~~~~y~~~~f~~dLk~~~~ 126 (1637)
+=|..||||+|.+++ +.++. |+++... +.=+-..+-+.+++.+.
T Consensus 5 ~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t---reP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVILK---REPGGTETGEKIRKILL 51 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEE---ESSCSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEE---ECCCCCcHHHHHHHHhh
Confidence 449999999999775 44553 3444322 21122345566666654
No 438
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.55 E-value=2.5e+02 Score=28.38 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHhhhHHHHhhhhhhhhhhHhhhcccc
Q psy2649 431 RKALAAANAELAAASQKLAELKAKIASLEATLQELTDKF-DA-------AVKEKLFCQNQAEECAEKIDLADRLVNGLAS 502 (1637)
Q Consensus 431 ~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~-~~-------~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 502 (1637)
..++..+...+...++.-...+.....++..|++|...+ ++ ...+...++......+.++.-++.++..|
T Consensus 57 ~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l-- 134 (154)
T 2ocy_A 57 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL-- 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345555555555555555566666666677777666542 22 23466667777777778888888888766
Q ss_pred cccchHHHHHHHhhccccCCcc
Q psy2649 503 ENVRWKDSVLGLQQSALTLPGD 524 (1637)
Q Consensus 503 E~~rW~~~~~~l~~~~~~l~gd 524 (1637)
+.++..++.-+..+--|
T Consensus 135 -----q~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 135 -----TLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp -----HHHHHHHHHTTSCCC--
T ss_pred -----HHHHHHHHHHHHHhhhc
Confidence 45666666665555433
No 439
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.39 E-value=55 Score=24.46 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 446 QKLAELKAKIASLEATLQELTDKFD 470 (1637)
Q Consensus 446 ~~l~~~~~~l~~le~~l~~l~~~~~ 470 (1637)
+++...+.+++.++++++.|+..++
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665555443
No 440
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=37.17 E-value=1.1e+02 Score=35.43 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKF 469 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~ 469 (1637)
+.+.++++++.++..++++++..+..+...+..++..+.-+
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 106 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLA 106 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888777777777777776666665543
No 441
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=36.85 E-value=18 Score=39.60 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=17.4
Q ss_pred cCCCCc-eEEEeecCCchhhHHhHHHh
Q psy2649 72 EAPRGN-ALLVGVGGSGKQSLSRLSAF 97 (1637)
Q Consensus 72 ~~p~gh-~lLvG~~GsGr~sl~rlaa~ 97 (1637)
...+|. +.+.|.+||||+|+++..+-
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333443 45569999999999766554
No 442
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.69 E-value=2.1e+02 Score=25.44 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh
Q psy2649 436 AANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDL 492 (1637)
Q Consensus 436 ~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 492 (1637)
+++..|+.-...-+..+++|..+.......+.++.++.+.-..|..+++..+.+++.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455566667777777777777777777777777777666666553
No 443
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=36.65 E-value=29 Score=37.22 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=27.0
Q ss_pred eEEEeecCCchhhHHh-HHHhhc-cccceEEEeccccCcchhhhHHHHHHH
Q psy2649 78 ALLVGVGGSGKQSLSR-LSAFIS-TLEPFQIQLKKNYGIPDLKIDLASLYL 126 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~r-laa~~~-~~~~~~i~~~~~y~~~~f~~dLk~~~~ 126 (1637)
+.+-|..||||+|+++ |+.++. |++++. ++.-+-..+-+.+++++.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~---~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM---TREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE---EESSTTCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEE---eeCCCCChHHHHHHHHHh
Confidence 3456999999999976 455553 444432 222222345566666654
No 444
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=36.53 E-value=35 Score=40.06 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=22.5
Q ss_pred CceEEEeecCCchhhH-HhHHHhhc--cccceEE
Q psy2649 76 GNALLVGVGGSGKQSL-SRLSAFIS--TLEPFQI 106 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~~i 106 (1637)
..+.++|.+|+||+|+ .+|+..+. |.++.-+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 4678899999999999 56776653 4454444
No 445
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=36.45 E-value=30 Score=36.85 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=41.5
Q ss_pred Cce-EEEeecCCchh-hHHhHHHh--hccccceEEEec--cccCcchhh---------------hHHHHHHHHhhccccc
Q psy2649 76 GNA-LLVGVGGSGKQ-SLSRLSAF--ISTLEPFQIQLK--KNYGIPDLK---------------IDLASLYLKAGLKNAG 134 (1637)
Q Consensus 76 gh~-lLvG~~GsGr~-sl~rlaa~--~~~~~~~~i~~~--~~y~~~~f~---------------~dLk~~~~~ag~~~~~ 134 (1637)
|.+ ++.|+-||||+ .|.+.+.. ..+.+++-+... ..|+ .++. +|+++.+. .-
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~~~~------~~ 92 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEAL------GV 92 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHHHHH------TC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHHhcc------CC
Confidence 444 44799999999 66666544 345566655433 1233 1111 12222111 12
Q ss_pred EEEEeccccccccceeeeehhhhcc
Q psy2649 135 IMFLMTDSQVADEKFLVIINDMLAS 159 (1637)
Q Consensus 135 ~v~l~~d~~i~~~~fle~in~lL~~ 159 (1637)
-|++++|.|.. +...|.+|.|...
T Consensus 93 DvIlIDEaQFf-k~~ve~~~~L~~~ 116 (195)
T 1w4r_A 93 AVIGIDEGQFF-PDIVEFCEAMANA 116 (195)
T ss_dssp SEEEESSGGGC-TTHHHHHHHHHHT
T ss_pred CEEEEEchhhh-HHHHHHHHHHHHC
Confidence 48889999987 5455555555443
No 446
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=36.34 E-value=15 Score=40.81 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=22.3
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc-cccceEE
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS-TLEPFQI 106 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~-~~~~~~i 106 (1637)
...++++|.+|+||+|+ .+||.++. +.++.-+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vv 47 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 47 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 46678899999999999 55655443 4444444
No 447
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=36.31 E-value=12 Score=38.41 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.5
Q ss_pred CCceEEEeecCCchhhHHh
Q psy2649 75 RGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~r 93 (1637)
.-+++++|.+|+||+||.+
T Consensus 8 ~~~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMH 26 (182)
T ss_dssp EEEEEEECCTTSSHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHH
Confidence 4578999999999999974
No 448
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.31 E-value=94 Score=28.72 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 434 LAAANAELAAASQKLAELKAKIASLEATLQELT 466 (1637)
Q Consensus 434 l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~ 466 (1637)
+..+...++..-.+...+++.=+.++.++..++
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444443
No 449
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=36.23 E-value=66 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 459 EATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 459 e~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
+.+|..|++.++........|+..-...++.++|.++|+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5667778888888877778888777777777888777765
No 450
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=36.13 E-value=37 Score=38.79 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc--cccceEE
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS--TLEPFQI 106 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~--~~~~~~i 106 (1637)
+.-++++|.+|+||+|+ ..||.++. +.++.-+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34567789999999997 55665554 4455533
No 451
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=36.07 E-value=1.4e+02 Score=26.32 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 445 SQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 445 ~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
..+.+..+..+..++..+++++.+.+...+|-+.|-.---..+..+..-.+|++
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677788888888888888888888877777666555555666666677766
No 452
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.04 E-value=56 Score=37.50 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=25.2
Q ss_pred EEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 424 WTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFD 470 (1637)
Q Consensus 424 ~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~ 470 (1637)
.+++.-+++++.++|..+....+++..++..+..++.+|++|+.++.
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666655555555555555555555555555544433
No 453
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=36.04 E-value=13 Score=37.82 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.1
Q ss_pred CceEEEeecCCchhhHHhH
Q psy2649 76 GNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rl 94 (1637)
=+++++|.+|+||+||.+-
T Consensus 7 ~~i~v~G~~~~GKSsli~~ 25 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWR 25 (170)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 3689999999999999654
No 454
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.99 E-value=1.1e+02 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2649 455 IASLEATLQELTDKFDAAVKEKLFCQNQA 483 (1637)
Q Consensus 455 l~~le~~l~~l~~~~~~~~~e~~~l~~~~ 483 (1637)
+..+.++-+.|.+.+.++..+..+|.+++
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 455
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=35.58 E-value=1.8e+02 Score=26.52 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHH
Q psy2649 435 AAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGL 514 (1637)
Q Consensus 435 ~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l 514 (1637)
.-++..|..+++-|...+......+..+..|++.+++-...-++-+.+++ .|.+|...|...+.+.
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~--------------elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIK--------------ELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 34677788888888888888888888888888887776554333333333 3555566677776665
Q ss_pred hhc
Q psy2649 515 QQS 517 (1637)
Q Consensus 515 ~~~ 517 (1637)
..+
T Consensus 87 ~~~ 89 (99)
T 3ni0_A 87 RIQ 89 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 456
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=35.43 E-value=14 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=15.1
Q ss_pred ceEEEeecCCchhhHHh
Q psy2649 77 NALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~r 93 (1637)
+++++|.+|+||+||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIY 19 (190)
T ss_dssp EEEEEEBTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999964
No 457
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=35.40 E-value=15 Score=37.70 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.2
Q ss_pred CCCceEEEeecCCchhhHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~r 93 (1637)
..-+++++|.+|+||+||.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~ 26 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLD 26 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999999964
No 458
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.36 E-value=13 Score=37.68 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.6
Q ss_pred CceEEEeecCCchhhHHh
Q psy2649 76 GNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~r 93 (1637)
=+++++|.+|+||+||.+
T Consensus 4 ~~i~v~G~~~~GKssli~ 21 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 468999999999999954
No 459
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=35.34 E-value=13 Score=37.56 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=15.2
Q ss_pred ceEEEeecCCchhhHHhH
Q psy2649 77 NALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rl 94 (1637)
+++++|.+|+||+||..-
T Consensus 2 ki~~~G~~~~GKssl~~~ 19 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYK 19 (164)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999643
No 460
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=35.31 E-value=15 Score=43.36 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=26.4
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
+..+.|-..++|++|+||+|+.+..+++....
T Consensus 22 ~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~ 53 (359)
T 2o5v_A 22 LNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ 53 (359)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHHHSC
T ss_pred EEEcCCeEEEECCCCCChhHHHHHHHHhccCC
Confidence 44466788999999999999999998876544
No 461
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=35.26 E-value=13 Score=37.70 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=15.1
Q ss_pred ceEEEeecCCchhhHHh
Q psy2649 77 NALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~r 93 (1637)
+++++|.+|+||+||..
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999964
No 462
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=35.11 E-value=13 Score=38.06 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=16.0
Q ss_pred CceEEEeecCCchhhHHhH
Q psy2649 76 GNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rl 94 (1637)
=+++++|.+|+||+||..-
T Consensus 8 ~~i~v~G~~~~GKSsli~~ 26 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNR 26 (177)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3689999999999999543
No 463
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=34.90 E-value=17 Score=44.07 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.1
Q ss_pred CCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 75 RGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
++..+++|++|+||+|+.+..+++.+..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 5678899999999999999999987653
No 464
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=34.81 E-value=1.5e+02 Score=30.12 Aligned_cols=67 Identities=22% Similarity=0.182 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhh
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 498 (1637)
-+.++++++...+.+...+|++.-+.-..+.+.|......+++...+.+ ..++.++.++.|...+-.
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e---~~leeyK~Kl~rv~~vkk 138 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKE---KKLEEYKQKLARVTQVRK 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3445666666667777777776666666777777777666666654433 345556666666554433
No 465
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=34.71 E-value=14 Score=37.66 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=15.3
Q ss_pred ceEEEeecCCchhhHHhH
Q psy2649 77 NALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rl 94 (1637)
+++++|.+|+||+||.+-
T Consensus 4 ki~ivG~~~~GKSsli~~ 21 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGT 21 (169)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999653
No 466
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.57 E-value=96 Score=31.80 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=14.4
Q ss_pred HHhhhhhhhhhhHhhhcccccccchHHHHHHHhhcc
Q psy2649 483 AEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSA 518 (1637)
Q Consensus 483 ~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~ 518 (1637)
+......+++...-...+..|+..-.+.+..+++..
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444433
No 467
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=34.56 E-value=17 Score=36.81 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=23.6
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+..+.|--+++|+.||||+|+..--+|..
T Consensus 19 i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34456788999999999999988777765
No 468
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=34.53 E-value=16 Score=43.28 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.3
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+..+.|-.+++|+.|+||+|+....++..
T Consensus 19 i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 19 IEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45567888899999999999988877764
No 469
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=34.46 E-value=15 Score=45.39 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=18.5
Q ss_pred CCceEEEeecCCchhhHHhHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLS 95 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rla 95 (1637)
.+|+|++|.+||||+++.+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 589999999999999997643
No 470
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=34.38 E-value=14 Score=37.54 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=16.0
Q ss_pred CceEEEeecCCchhhHHhH
Q psy2649 76 GNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rl 94 (1637)
=+++++|.+|+||+||.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~ 25 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLR 25 (170)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 3689999999999999643
No 471
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.30 E-value=2.1e+02 Score=24.18 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q psy2649 449 AELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEK 489 (1637)
Q Consensus 449 ~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 489 (1637)
..+++.+.+++.+++.|+.+-..+..+...|+.++.....-
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777777777777776666666666555443
No 472
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.99 E-value=1.7e+02 Score=27.57 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHh
Q psy2649 444 ASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRL 496 (1637)
Q Consensus 444 ~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L 496 (1637)
.+++|...+.++.++.+++.+|+...+...+|+.-.=.++..++.=++.+..+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555555555555555555555554444444444444444433
No 473
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=33.92 E-value=84 Score=31.94 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccccchHHHHHHHhhccc
Q psy2649 460 ATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENVRWKDSVLGLQQSAL 519 (1637)
Q Consensus 460 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~l~~~~~ 519 (1637)
+++..+....+++....+.-...++.+..-+..|.+-...+...+.-|............
T Consensus 85 Erea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qE 144 (169)
T 3k29_A 85 IQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQE 144 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333445555555666666677774334448776665554443
No 474
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=33.89 E-value=16 Score=41.99 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.5
Q ss_pred CCceEEEeecCCchhhHHhHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLS 95 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rla 95 (1637)
.=+++|+|.+|+||+||.+.-
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L 38 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSL 38 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 345599999999999998873
No 475
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=33.79 E-value=15 Score=37.64 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.7
Q ss_pred CceEEEeecCCchhhHHh
Q psy2649 76 GNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~r 93 (1637)
-+++++|.+|+||+||.+
T Consensus 10 ~~i~v~G~~~~GKssli~ 27 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTI 27 (181)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999963
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=33.78 E-value=19 Score=37.57 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=17.1
Q ss_pred CCCceEEEeecCCchhhHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~r 93 (1637)
..-+++++|.+|+||+||..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~ 41 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFIN 41 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34789999999999999954
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=33.77 E-value=17 Score=46.20 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+|....|+|++||||+||.|+.+-+.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56678899999999999999988764
No 478
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=33.68 E-value=14 Score=38.37 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.8
Q ss_pred CceEEEeecCCchhhHHhHH
Q psy2649 76 GNALLVGVGGSGKQSLSRLS 95 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rla 95 (1637)
-.++++|.+|+||+||.+--
T Consensus 8 ~~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46889999999999997643
No 479
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.57 E-value=1.3e+02 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 445 SQKLAELKAKIASLEATLQELTDKFDAAV 473 (1637)
Q Consensus 445 ~~~l~~~~~~l~~le~~l~~l~~~~~~~~ 473 (1637)
+++++.++..++.++.+++.|-.+|+.+.
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq 32 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQ 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666554
No 480
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=33.56 E-value=18 Score=37.62 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=16.5
Q ss_pred CCceEEEeecCCchhhHHh
Q psy2649 75 RGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~r 93 (1637)
.-+++++|.+|+||+||..
T Consensus 23 ~~~i~v~G~~~~GKSsli~ 41 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLN 41 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999999964
No 481
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=33.46 E-value=26 Score=37.80 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=19.8
Q ss_pred CCceEEEeecCCchhhH-HhHHHhhc
Q psy2649 75 RGNALLVGVGGSGKQSL-SRLSAFIS 99 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl-~rlaa~~~ 99 (1637)
...++++|.+|+||+|+ .+|+....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35688999999999999 57776643
No 482
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=33.39 E-value=2.3e+02 Score=33.85 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhH
Q psy2649 442 AAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADR 495 (1637)
Q Consensus 442 ~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 495 (1637)
+.|+.++++.+++|.+.++.++..++......+-.+.++.+++.+..++.+|..
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHH
Confidence 555666666666666666666666666555555555555555555555555443
No 483
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=33.35 E-value=14 Score=37.38 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=15.9
Q ss_pred CceEEEeecCCchhhHHhH
Q psy2649 76 GNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~rl 94 (1637)
=+++++|.+|+||+||.+-
T Consensus 4 ~ki~v~G~~~~GKssli~~ 22 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQ 22 (167)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999999543
No 484
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.31 E-value=1.2e+02 Score=29.51 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHhhhhhhhhhhHh
Q psy2649 433 ALAAANAELAAASQKLA----ELKAKIASLEATLQELTDKFDAAVKE-------KLFCQNQAEECAEKIDLADRL 496 (1637)
Q Consensus 433 ~l~~~e~~l~~~~~~l~----~~~~~l~~le~~l~~l~~~~~~~~~e-------~~~l~~~~~~~~~rl~ra~~L 496 (1637)
.++.+..++...+.+++ +.+..+..++.+|..|+.+++..... .+.|..+++.+......+..+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~ 90 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKA 90 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34444444444444433 33445556666666666666666544 444555555544444333333
No 485
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=33.17 E-value=17 Score=45.37 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFIS 99 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~ 99 (1637)
+|....|+|++||||+||.|+.+-+.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56678899999999999999988764
No 486
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=33.17 E-value=15 Score=43.29 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=17.5
Q ss_pred ceEEEeecCCchhhHHhHHHhh
Q psy2649 77 NALLVGVGGSGKQSLSRLSAFI 98 (1637)
Q Consensus 77 h~lLvG~~GsGr~sl~rlaa~~ 98 (1637)
.+||+|.|||||+|+.|-..-+
T Consensus 11 k~lllG~~~sGKsT~~kq~~~~ 32 (354)
T 2xtz_A 11 KLLLLGAGESGKSTIFKQIKLL 32 (354)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3688899999999998876644
No 487
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=33.12 E-value=13 Score=38.28 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=17.2
Q ss_pred CCCceEEEeecCCchhhHHh
Q psy2649 74 PRGNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~r 93 (1637)
+.-+++++|.+|+||+||.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~ 25 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIH 25 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 45678999999999999954
No 488
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.10 E-value=33 Score=37.57 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy2649 448 LAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEE 485 (1637)
Q Consensus 448 l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~ 485 (1637)
++.++.++..++++.+.|++.+.++.+|..+|+++++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555444444444443
No 489
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=33.02 E-value=18 Score=39.76 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=19.7
Q ss_pred eEEEeecCCchhhHHhHHHhhccccce
Q psy2649 78 ALLVGVGGSGKQSLSRLSAFISTLEPF 104 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~rlaa~~~~~~~~ 104 (1637)
+-++|++||||+|+++.-+--.++..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 456899999999998765554455544
No 490
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=32.95 E-value=14 Score=37.14 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=15.1
Q ss_pred CceEEEeecCCchhhHH
Q psy2649 76 GNALLVGVGGSGKQSLS 92 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~ 92 (1637)
-+++++|.+|+||+||.
T Consensus 4 ~~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46899999999999994
No 491
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=32.94 E-value=15 Score=46.64 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCceEEEeecCCchhhHHhHHHhhcccc
Q psy2649 74 PRGNALLVGVGGSGKQSLSRLSAFISTLE 102 (1637)
Q Consensus 74 p~gh~lLvG~~GsGr~sl~rlaa~~~~~~ 102 (1637)
|+....++|++||||+||.++-+-+..-+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 45577889999999999999988775543
No 492
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.93 E-value=1.2e+02 Score=24.63 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2649 432 KALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAA 472 (1637)
Q Consensus 432 ~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~ 472 (1637)
.++.+++..+....++-+++.+.|.+..++|..|++++++.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666666666666554
No 493
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=32.80 E-value=15 Score=37.64 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=15.6
Q ss_pred CceEEEeecCCchhhHHh
Q psy2649 76 GNALLVGVGGSGKQSLSR 93 (1637)
Q Consensus 76 gh~lLvG~~GsGr~sl~r 93 (1637)
=+++++|.+|+||+||.+
T Consensus 10 ~~i~v~G~~~~GKssl~~ 27 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLL 27 (181)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999999964
No 494
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=32.59 E-value=16 Score=37.58 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.7
Q ss_pred CCceEEEeecCCchhhHHhH
Q psy2649 75 RGNALLVGVGGSGKQSLSRL 94 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rl 94 (1637)
.-+++++|.+|+||+||.+-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~ 25 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTC 25 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHH
Confidence 35689999999999999653
No 495
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=32.44 E-value=32 Score=36.09 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=26.1
Q ss_pred eEEEeecCCchhhHHh-HHHhhccccceEEEeccccCcchhhhHHHH
Q psy2649 78 ALLVGVGGSGKQSLSR-LSAFISTLEPFQIQLKKNYGIPDLKIDLAS 123 (1637)
Q Consensus 78 ~lLvG~~GsGr~sl~r-laa~~~~~~~~~i~~~~~y~~~~f~~dLk~ 123 (1637)
.+++|.+||||+++++ |+.. +..++.+.....++ .+|.+.++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~--~~~~~yiaT~~~~d-~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD--APQVLYIATSQILD-DEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS--CSSEEEEECCCC-------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc--CCCeEEEecCCCCC-HHHHHHHHH
Confidence 4788999999999976 6555 66666666554442 345554444
No 496
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=32.40 E-value=1.5e+02 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q psy2649 459 EATLQELTDKFDAAVKEKLFCQNQAEECAEK 489 (1637)
Q Consensus 459 e~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 489 (1637)
..+-+.|+.++....+-+.+++..+..++..
T Consensus 43 t~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 43 TCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 497
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=32.34 E-value=20 Score=39.34 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.9
Q ss_pred CCceEEEeecCCchhhHHhHH
Q psy2649 75 RGNALLVGVGGSGKQSLSRLS 95 (1637)
Q Consensus 75 ~gh~lLvG~~GsGr~sl~rla 95 (1637)
+..++++|+.||||+++.++.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHH
Confidence 567899999999999987655
No 498
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=32.34 E-value=80 Score=36.95 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhhHHHHhhhhhhh
Q psy2649 429 PKRKALAAANAELAAASQKLAELKAKIASLEATLQEL-----------------TDKFDAAVKEKLFCQNQAEECAEKID 491 (1637)
Q Consensus 429 P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l-----------------~~~~~~~~~e~~~l~~~~~~~~~rl~ 491 (1637)
+.+.++++++.++..++++++..+..+...+..++.+ +.+++.+..+.+.++.+++..+..++
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHhhhcc
Q psy2649 492 LADRLVNGL 500 (1637)
Q Consensus 492 ra~~Li~~L 500 (1637)
.|+.-++..
T Consensus 147 ~a~~~l~~~ 155 (369)
T 4dk0_A 147 TAETNLGYT 155 (369)
T ss_dssp HHHHTTCCS
T ss_pred HHHHHhhcC
No 499
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=32.24 E-value=18 Score=38.78 Aligned_cols=30 Identities=33% Similarity=0.352 Sum_probs=0.0
Q ss_pred hcCCCCceEEEeecCCchhhHHhHHHhhcc
Q psy2649 71 MEAPRGNALLVGVGGSGKQSLSRLSAFIST 100 (1637)
Q Consensus 71 L~~p~gh~lLvG~~GsGr~sl~rlaa~~~~ 100 (1637)
+..+.|--+++|+.|+||+|+..-.+|+.+
T Consensus 19 i~f~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEeCCCeEEEEcCCCCCHHHHHHHHHHHhc
No 500
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=32.21 E-value=1.9e+02 Score=24.90 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHhhhcccccc
Q psy2649 443 AASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASEN 504 (1637)
Q Consensus 443 ~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~ 504 (1637)
..+.-+.+-++--..+...-+.+++.|++...=+++-+++-+-...|...|..++..|+.|+
T Consensus 9 ~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E~ 70 (70)
T 3brv_B 9 TLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCC
Done!