RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2649
(1637 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 1546 bits (4003), Expect = 0.0
Identities = 387/1781 (21%), Positives = 718/1781 (40%), Gaps = 272/1781 (15%)
Query: 5 EYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHI 64
+ + +P++Y +++ Y + + + L + + + + E + LVLF + + HI
Sbjct: 1581 DALKRPILYSNWL----TKDYQPV-NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHI 1635
Query: 65 CRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASL 124
RI+R+ P+G+ALL+GV G GK LSR A+++ L + I++ NY D DL L
Sbjct: 1636 LRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRML 1695
Query: 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPEI 184
+AG K I F+ +S V + FL +N +LA GEVP LF +E +++
Sbjct: 1696 LKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKET--- 1752
Query: 185 PLTADLDPLTMLTDDATIAF---------------------------------------- 204
A + L + +++ +
Sbjct: 1753 ---AQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDW 1809
Query: 205 ---WNNEGL-------------PNDRMSTENATILVNSQRWPLMIDPQEVLRKPCAVFMA 248
W+ E L N + I ++ R +
Sbjct: 1810 FGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLV 1869
Query: 249 YVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKL 308
Y+H ++ + ++ L + R NY TP+ +L+ I+ L+ K D + GL+KL
Sbjct: 1870 YIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKL 1929
Query: 309 VSLGNEEKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPP 368
E +V+ ++ L + L E + K + + +A +
Sbjct: 1930 RD---TEAQVKDLQ-----------VSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQ 1975
Query: 369 QGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVINIITFYNVWTF-- 426
+ + + V + V + + ++
Sbjct: 1976 KDARELQVQLDV---------------------------RNKEIAVQKVKAYADLEKAEP 2008
Query: 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEEC 486
P R+ + K E+ A I +LE ++ +++ ++E + ++ +
Sbjct: 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068
Query: 487 AEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLDL 546
K+D + L++ L SE RW+ T+ GD++L +AF++Y+G F +++R DL
Sbjct: 2069 KNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDL 2128
Query: 547 LNKFWLPTIKKSKI---------------DWFHEWPQEAL--ESVSLKFLVKSCESHRY- 588
+ K W+ + I + W +L + + ++ + +RY
Sbjct: 2129 MRK-WMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYP 2187
Query: 589 ------------------GNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVLD 630
K+T M +E A+ G LL++++ E++DPVL+
Sbjct: 2188 LVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQDV-ENIDPVLN 2246
Query: 631 NLIGRNLIRKG--KVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRD 688
++ + + +KG ++++G++++D++P+F + L T+ H+ P++ ++ T +NFTVT
Sbjct: 2247 PVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPS 2306
Query: 689 GLEDQLLAEVVKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNL 748
L+ Q L E +K ERPD +++L K Q F++ L+ LE LL LS + G++L D ++
Sbjct: 2307 SLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSV 2366
Query: 749 VLNLEKSKKTAKEIEIKVKEGKKTAKKIDEAREQYRPAAERASVIYFIMNELFKINPIYQ 808
+ LE KK EI +KV+E + ++I E Y P A S +YF M EL + + +YQ
Sbjct: 2367 ISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQ 2425
Query: 809 FSLKAFTVVFHNAMTKAKK---SDNLKGRVANLVESITFMTFQYTSRGLFERDKLIFMAQ 865
FSL+AF +F+N + + R+ L + I MTF +R L DKL F Q
Sbjct: 2426 FSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQ 2485
Query: 866 MTIQVKSLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREE 925
+TI I++ EI E
Sbjct: 2486 LTI-------------------------------------------ISVKGTSNEIEESE 2502
Query: 926 LDFLLR-----FPFQPGVSSPVDFLTNTLWG-GVRALSNLEEFKNLDKDIEAAAKRWKKY 979
DFLL+ + + L+ T + + F L I+ + WK++
Sbjct: 2503 WDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQF 2562
Query: 980 IEGETPEKDKLPQEW------------KNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMG 1027
+ + +P+ W S +++ +M+ DR+ SFV G
Sbjct: 2563 FGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFG 2622
Query: 1028 DRYVNARAIEFEQSY-RESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSL 1086
+ ++N + ++ +E S++P+ PG D + V+ + ++ + + ++
Sbjct: 2623 EDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLH-----KQYKSFAI 2677
Query: 1087 GQGQEV-IAEETIQIASTKGHWAILQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAE 1145
G + +AE++I A+ G W +L+N+HL WL L+KK+ + PH ++RLF+++E
Sbjct: 2678 GSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHS--LSPHPSFRLFMTSE 2735
Query: 1146 PASDPEYHIIPQGVLDSSIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFA 1205
+P +L S + E P G++ANL M + AE I F
Sbjct: 2736 IHPA-----LPANLLRMSNVFSYENPPGVKANLLHTFIGIPATR--MDKQPAERSRIYFL 2788
Query: 1206 LCYFHAVVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLE---------ANNNVPWED 1256
L +FHA++ ER ++ P GW + + FN DL + + +++ + +PW
Sbjct: 2789 LAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIA 2848
Query: 1257 LRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAP--GFPAPPNQDYQGYH 1314
+R + G +YGG I +++D RL ++LE+ P + L P G P +
Sbjct: 2849 VRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFM 2908
Query: 1315 TYIDESLPPESPILYGLHPNAEIGFLTTQAENVFKIIFELQPRDTAAAQGSGV------- 1367
+I+ +PI GL NAE L+ +A + + ++Q +
Sbjct: 2909 KWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKES 2968
Query: 1368 -------TREEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYIIVAFQECERMNILMSE 1420
+ K+R + E P + P +E L+ +
Sbjct: 2969 SSSSSEDKGKAKLRATITEWTKLLPKPLKQLKRTT-QNIKDPLFRCFEREISTGGKLVKK 3027
Query: 1421 IKRSLKELNLGLKGELTITTDMEALEYSIFMDTVPPSWEKRAYPSMLGLGGWFADLMLRL 1480
I L L + G + T + +L SI VP W+ + P + L W +D R+
Sbjct: 3028 ITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRM 3087
Query: 1481 KELENWVGDFQL-PSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCLQCDVTKKQRED 1539
++L VWL G NP++++TA QS ++ N W L+ + L K +
Sbjct: 3088 QQLSEISESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE 3147
Query: 1540 FTQAPRDGAYVNGLYMEGARWDIALGVISDAKLKELFPMMPVIYIKAITQDK---QDLRN 1596
V G+ +EGA W+ +D L + + + +D + +
Sbjct: 3148 ----GGASFNVKGMALEGAVWNNDQLTPTDI----LSTPISIATLTWKDKDDPIFNNSSS 3199
Query: 1597 MYECPVYKTRQRGPNYVWTFNLKTKEK--PAKWTMAGVALL 1635
PVY R +++ +L + W V++
Sbjct: 3200 KLSVPVYLNETRS-ELLFSIDLPYDQSTSKQNWYQRSVSIS 3239
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 757 bits (1955), Expect = 0.0
Identities = 166/983 (16%), Positives = 347/983 (35%), Gaps = 179/983 (18%)
Query: 425 TFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAE 484
P + A + + K +L+ + L++L + +
Sbjct: 1841 NPRSPGYF-IDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNE-----------SVLKVN 1888
Query: 485 ECAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRL 544
E L+ LV L E RW ++ +++ L G+ ++ + + +Y G R
Sbjct: 1889 EL--NKTLSISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERA 1946
Query: 545 DLLNKFWLPTIKKSKI---------------DWFHEWPQEALESVSL-----KFLVKSCE 584
D+L + K + D +W + L+ ++ S +
Sbjct: 1947 DMLVI-LKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQD 2005
Query: 585 SH----------------RYGNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPV 628
+ YGNK ++ ++ + ++E A+ G V++I++ GE DP+
Sbjct: 2006 AVPFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAIRFGSVVIIQD-GEFFDPI 2064
Query: 629 LDNLIGRNLIRKG--KVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVT 686
+ LI R G V+IG+ E+D + +FKL +H+ + ++++ L++F
Sbjct: 2065 ISRLISREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTN 2124
Query: 687 RDGLEDQLLAEVVKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDK 746
++ +E ++ + E +++ + +L K +K+ LK LE LL L++S G++L +
Sbjct: 2125 KESIETRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLEND 2184
Query: 747 NLVLNLEKSKKTAKEIEIKVKEGKKTAKKIDEAREQYRPAAERASVIYFIMNELFKINPI 806
L++ L KK A IE K+ E ++ + D E+Y + + I+ ++ + + +
Sbjct: 2185 ELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWF 2244
Query: 807 YQFSLKAFTVVFHNAM-TKAKKSDNLKGRVANLVESITFMTFQYTSRGLFERDKLIFMAQ 865
Y S+ F F K++++ + RV ++ + + S L ++ K+I
Sbjct: 2245 YGISIGQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMT 2304
Query: 866 MTIQVKSLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREE 925
M + K +I E+
Sbjct: 2305 MFC-----------------------------------------------LYKFDIESEQ 2317
Query: 926 LDFLLRFPFQPGVSSPVDFLTNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETP 985
+ + G + S+ +D + + + + T
Sbjct: 2318 YKEAVLT----------------MIGVLSESSDGVPKLTVDTNND-----LRYLWDYVTT 2356
Query: 986 EKDKLPQEWKNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIEFEQSYRES 1045
+ W + + + +
Sbjct: 2357 KSYISALNW-----FKNEFFVDEWNIADVV----------------------------AN 2383
Query: 1046 SSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEV-IAEETIQIASTK 1104
S VD T + + + + L + LG + + A+E I + +
Sbjct: 2384 SDNNYFTMASERDVDGTFKLIELAKASKES-----LKIIPLGSIENLNYAQEEISKSKIE 2438
Query: 1105 GHWAILQNVHLVKNWLPT-LDKKMEA-SFEKPHKNYRLFISAEPASDPEYHIIPQGVLDS 1162
G W +LQN+ + +W+ T L K +E + H+ +++F++ D +P +L
Sbjct: 2439 GGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDK----LPAPLLQR 2494
Query: 1163 SIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQ 1222
+ + E G+ + D + + F L +FHA++ R + P
Sbjct: 2495 TDRFVYEDIPGILDTV---KDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPH 2551
Query: 1223 GWNRSYPFNVGDLTISSLVLYNYLEAN--NNVPWEDLRYLFGEIMYGGHITDDWDRRLCR 1280
G+++ Y FN D +S+ L N L N NN+PW +R I+YGG I ++ D +
Sbjct: 2552 GFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVA 2611
Query: 1281 TYLEEYMNPE----LLEGETKLAPGFPAPPNQDYQGYHTYIDESLPP--ESPILYGLHPN 1334
++ G P ++ + ++ P L
Sbjct: 2612 KLCAHVFCGSDNLQIVPGVRIPQPLLQQSEEEERARLTAILSNTIEPADSLSSWLQLPRE 2671
Query: 1335 AEIGFLTTQAENVFKIIFELQPR 1357
+ + + QA+ V +L
Sbjct: 2672 SILNYERLQAKEVASSTEQLLQE 2694
Score = 263 bits (674), Expect = 6e-71
Identities = 65/395 (16%), Positives = 148/395 (37%), Gaps = 47/395 (11%)
Query: 3 ENEYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMS 62
L++ + ++ L + E ++ + + +V+ E +
Sbjct: 1542 LGNISSTSLLFSGL----LSLDFKEVNKT-DLVNFIEERFKTFCDEELEVPMVIHESMVD 1596
Query: 63 HICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLA 122
HI RI+R ++ +G+ +L+G +GK L+R A+++ L+ Q ++ ++ + D + L
Sbjct: 1597 HILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDMILK 1656
Query: 123 SLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIA--- 179
LK + ++ +S + + FL +N +LA+ ++PDLF +E + ++NN+
Sbjct: 1657 KAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKT 1716
Query: 180 -AEPEIPLTAD-------------------LDPLTMLTDDATIAF--------------W 205
+ + T + T A I+ W
Sbjct: 1717 RSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRCIINWMGDW 1776
Query: 206 NNEGLPNDRMSTENATILVNSQRWPLMIDPQEVLRKPCA-VFMAYVHSSVNQISVSYLLN 264
+ + + + + + + ++ + V +P + A V+ ++ Y
Sbjct: 1777 DTKTMSQVANNMVDVIPMEFTDFIVPEVNKELVFTEPIQTIRDAVVNILIHFDRNFYQKM 1836
Query: 265 ERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLGNEEKKVRAIEED 324
+ N +P F++ + KL+ K+ D + GL+KL KV + +
Sbjct: 1837 KVGVNPRSPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNE---SVLKVNELNKT 1893
Query: 325 VSYKQ-KVCAEDLEKAEPALVAAQEALDTLDKNNL 358
+S K + E+ + L N +
Sbjct: 1894 LSISLVKSLTFEKERWLNTTKQFSKTSQELIGNCI 1928
Score = 86.4 bits (214), Expect = 6e-17
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 7/127 (5%)
Query: 116 DLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDL--FTDDEIEN 173
+L L+ L L +L T Q + +I N +++S + E +
Sbjct: 1889 ELNKTLSIS-LVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERAD 1947
Query: 174 IVN---NIAAEPEIPLTADLDPLTMLTDDATIAFWNNEGLPNDRMSTENATILVNSQ-RW 229
++ + + + + + L W GL + EN +I++NSQ
Sbjct: 1948 MLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAV 2007
Query: 230 PLMIDPQ 236
P ++DP
Sbjct: 2008 PFLLDPS 2014
Score = 44.4 bits (105), Expect = 4e-04
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 560 IDWFHEWPQEALESVSLKFL 579
I+W +W + + V+ +
Sbjct: 1770 INWMGDWDTKTMSQVANNMV 1789
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR
{Chlamydomonas reinhardtii}
Length = 155
Score = 107 bits (269), Expect = 7e-27
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 48/152 (31%)
Query: 334 EDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDL 393
DL +A P L AA +ALDTL ++TE+K +K+PP GV V +A+ ++ K +V
Sbjct: 4 ADLAEALPLLEAALKALDTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKDTA 63
Query: 394 G-------WKGSQ--------LKALKA------PPQ------------------------ 408
W+ S+ L +L+ PP+
Sbjct: 64 SGRMVDDYWEASKKMLMEFDFLDSLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSV 123
Query: 409 ---GLCAWVINIITFYNVWTFVEPKRKALAAA 437
GLC+WVI + + V VEPKR+ L A
Sbjct: 124 ACAGLCSWVIALEKYDKVIKEVEPKRQKLREA 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 87.4 bits (216), Expect = 3e-17
Identities = 102/682 (14%), Positives = 197/682 (28%), Gaps = 257/682 (37%)
Query: 1009 LRPDRMTY-AVR-SF-VEEKMGDRYVNARAI--EFEQSYRESSSTTPIFFILSPGVDPTR 1063
RP +++ ++ V + A + +F + E + + +PT
Sbjct: 6 TRPLTLSHGSLEHVLLVPTAS---FFIASQLQEQFNKILPEPTEG------FAADDEPTT 56
Query: 1064 DVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETIQIASTKGHWAILQ--NVHLVKNWLP 1121
E VG+ +G+ + L + +GQ +V+ + + L+ ++H + L
Sbjct: 57 PAELVGKFLGYVSSL--VEPSKVGQFDQVLNLCLTEFENC-----YLEGNDIHALAAKLL 109
Query: 1122 TLDKKMEASFEKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNEPPTGMQAN-LHK 1180
+ ++ KNY + + P + L +
Sbjct: 110 QENDTTLVKTKELIKNY-------------IT---------ARIMAKRPFDKKSNSALFR 147
Query: 1181 ALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDLTISSL 1240
A+ A+ L A+ FG QG
Sbjct: 148 AVG----------EGNAQ----LVAI------------FGGQG----------------- 164
Query: 1241 VLYNYLEANNNVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAP 1300
N + +E+LR L+ + Y + D L EL+
Sbjct: 165 --------NTDDYFEELRDLY-QT-YHVLVGDLIKF--SAETLS-----ELIRTTLDAEK 207
Query: 1301 GFP-------------APPNQDYQGYHTYIDESLPPESPILYGLHPNAEIGFLTTQAEN- 1346
F P++DY S P L G+ Q +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPI---SCP-----LIGV----------IQLAHY 249
Query: 1347 -VFKIIFELQPRDTAAAQGSGVTREEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYII 1405
V + P + + G T G + ++
Sbjct: 250 VVTAKLLGFTPGE-LRSYLKGAT--------------------------GHSQG----LV 278
Query: 1406 VA-----------FQECERMNILMSEIKRSLKEL-NLGLKGELTITTDMEALEYSIFMDT 1453
A F +++++ L +G++ +L SI D+
Sbjct: 279 TAVAIAETDSWESFFVS---------VRKAITVLFFIGVRC--YEAYPNTSLPPSILEDS 327
Query: 1454 VPPSWEKRAYPS-MLGLGGWFADLMLRLKELENWVGDF--QLPSSVWLA-GFFN-PQSF- 1507
+ + E PS ML + L ++++++V LP+ + N ++
Sbjct: 328 LENN-EGV--PSPMLSISN------LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 1508 -------LTAIMQSTARKNEWP--LDKMCLQCDVTKKQRE-DFTQ------APRDGAYVN 1551
L + T RK + P LD Q + +R+ F+ +P +
Sbjct: 379 VSGPPQSLYG-LNLTLRKAKAPSGLD----QSRIPFSERKLKFSNRFLPVASP-----FH 428
Query: 1552 GLYMEGARWDIALGVISDA---KLKELFPMMPVIYIKAITQDKQDLR--------NMYEC 1600
+ A I ++ + K++ +PV Y T D DLR + +C
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDI--QIPV-Y---DTFDGSDLRVLSGSISERIVDC 482
Query: 1601 ----PVY--KTRQRGPNYVWTF 1616
PV T Q ++ F
Sbjct: 483 IIRLPVKWETTTQFKATHILDF 504
Score = 58.9 bits (142), Expect = 2e-08
Identities = 100/627 (15%), Positives = 182/627 (29%), Gaps = 255/627 (40%)
Query: 181 EPEIPL-TADLDPLTMLTDDATIAFWNNEGLPNDRMSTENATILVNSQRWPLMIDPQEVL 239
E + + TA + L + F P + + ++ P E++
Sbjct: 17 EHVLLVPTASFFIASQLQEQ----FNKILPEPTEGFAADDEPT-----------TPAELV 61
Query: 240 RKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGIT 299
F+ YV S V ++ + ++L + + ++
Sbjct: 62 ----GKFLGYVSSLVEP---------------------SKVGQFDQVLNLCLTEFENCYL 96
Query: 300 RFQNGLQKLVS--LGNEEKKVRAIEEDV-SYKQKVCAEDLEKAEPALVAAQEALDTLDKN 356
N + L + L + + +E + +Y A + A+ D +
Sbjct: 97 E-GNDIHALAAKLLQENDTTLVKTKELIKNYIT------------ARIMAKRPFDKKSNS 143
Query: 357 NLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVIN 416
L +A+ ++A+ G G QG N
Sbjct: 144 AL--FRAVGEGNAQLVAIF-----------G------G-------------QG------N 165
Query: 417 IITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEK 476
+ F E L +L L + I TL EL EK
Sbjct: 166 TDDY-----FEE-----L----RDLYQTYHVL--VGDLIKFSAETLSELIR--TTLDAEK 207
Query: 477 LFCQNQAEECAEKIDLADRLVNG--------LASENVRWKDSVLGLQQSA---------- 518
+F Q +++ + L N L S + ++G+ Q A
Sbjct: 208 VFTQG--------LNILEWLENPSNTPDKDYLLSIPISCP--LIGVIQLAHYVVTAKLLG 257
Query: 519 LTLPGDIL------------LVTA-FVSYVGC---FTRSYR--LDLLNKFWLPTIKKSKI 560
T PG++ LVTA ++ F S R + +L F+ I
Sbjct: 258 FT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--FF--------I 306
Query: 561 DW-FHE-WPQEALESVSLKFLVKSCESHRYGNK---LTVIRLGQKRVMDQIEKA------ 609
+E +P +L +++ + G L++ L Q++V D + K
Sbjct: 307 GVRCYEAYPNTSLPPS----ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 610 ---------------VMSGFVLLIENIGESVDPVLDNLIGRNL-IRKGKV--------VK 645
V+SG P L G NL +RK K +
Sbjct: 363 GKQVEISLVNGAKNLVVSG-------------PPQS-LYGLNLTLRKAKAPSGLDQSRIP 408
Query: 646 IGEKEIDYNPNFKLIL------HTKL---ANPHYKPEMQAQTTLIN-----FTV--TRDG 689
E+++ ++ F L H+ L A+ ++ N V T DG
Sbjct: 409 FSERKLKFSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 690 -------------LEDQLLAEVVKFER 703
+ D ++ VK+E
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWET 492
Score = 58.9 bits (142), Expect = 2e-08
Identities = 122/806 (15%), Positives = 201/806 (24%), Gaps = 331/806 (41%)
Query: 216 STENATILVNSQRWPLMIDPQEVLRKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPKS 275
S E +LV + + + L++ F + + +E P +
Sbjct: 15 SLE-HVLLVPTASFFIA----SQLQEQ---FNKILPEPTEGFAAD---DE-------PTT 56
Query: 276 FLEQIDLYAKLLK-IKFDDNKSGITRFQNGLQKLVSLGNEEKKVRAIEEDVSYKQKVCAE 334
E L K L + S + +F L + E +
Sbjct: 57 PAE---LVGKFLGYVSSLVEPSKVGQFDQVLNLCL---------TEFENCY-----LEGN 99
Query: 335 DLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLG 394
D+ AL A L + N T L K +I + A K P D
Sbjct: 100 DIH----ALAA------KLLQENDTTLVKTKE----LIK-----NYITARIMAKRPFDKK 140
Query: 395 WKGSQLKALKAPP---------QGLCAWVINIITFYNVWTFVEPKRKALAAANAELAAAS 445
+ +A+ QG N + F E L +L
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQG------NTDDY-----FEE-----LR----DLYQTY 180
Query: 446 QKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVNGLASENV 505
L + I TL EL EK+F Q +++ +
Sbjct: 181 HVL--VGDLIKFSAETLSELIR--TTLDAEKVFTQG--------LNI------------L 216
Query: 506 RWKDSVLGLQQSALTLPGDILLVTAFVS------------YVGCFTRSYR-LDLLNKFWL 552
W L+ + T P L++ +S V + +L +
Sbjct: 217 EW------LENPSNT-PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 553 PTIKKSKI----------DW--FHEWPQEALESVSLKFLVKSCESHR-YGNKLTVIRLGQ 599
T + W F ++A+ + F + + Y N L
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAIT---VLFFI-GVRCYEAYPN----TSLPP 321
Query: 600 KRVMDQIEKAVMSGFVLLIENIGESV-DPVLDNLIGRNLIRKGKVVKIGEKEIDYNPNFK 658
+ D +E E V P+L ++ + + +V + ++
Sbjct: 322 SILEDSLE-------------NNEGVPSPML-SISN---LTQEQV----QDYVNK----- 355
Query: 659 LILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEVVKFERPDLELLKANLTKEQN 718
N H Q + +L+N L VV
Sbjct: 356 -------TNSHLPAGKQVEISLVN---GAKNL-------VV------------------- 379
Query: 719 LFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIEIKVKEGKKTAKKIDE 778
G S L L L K K G
Sbjct: 380 --------------------SGPPQSLYGLNLTLRK---------AKAPSGL-------- 402
Query: 779 AREQYR-PAAERASVIY--FIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKSDNLKGRV 835
+Q R P +ER F L P+ FH S L
Sbjct: 403 --DQSRIPFSERKLKFSNRF----L----PV--------ASPFH--------SHLLVPAS 436
Query: 836 ANLVESITFMTFQYTSRGLFERDKLIFMAQMTIQVKSLCMGDQHYHVLQQPKRKALAAAN 895
+ + + + + + I V Y ++
Sbjct: 437 DLINKDLVKNNVSFNA------------KDIQIPV---------YDTFD--------GSD 467
Query: 896 AELAAASQKLAELKAKIAISMMKKEIAREELDF--LLRFP------FQPGVSSPVDFLTN 947
L L I + I R + + +F F PG +S + LT+
Sbjct: 468 ---------LRVLSGSI-SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 948 TLW-G-GVRAL--SNLEEFKNLDKDI 969
G GVR + L+ N D D
Sbjct: 518 RNKDGTGVRVIVAGTLD--INPDDDY 541
Score = 56.2 bits (135), Expect = 1e-07
Identities = 96/555 (17%), Positives = 170/555 (30%), Gaps = 158/555 (28%)
Query: 35 HKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGN---ALLVGVGGSGKQSL 91
+ + +++++ L FE+ + GN AL + +L
Sbjct: 70 SLVEPSKVGQFDQVLNLC-LTEFENC---------YL---EGNDIHALAAKLLQENDTTL 116
Query: 92 SRLSAFISTLEPFQIQLKKNY-------GIPDLKIDLASLYLKAGLKNAGIM--FLMTDS 142
+ I KNY P K ++L+ G NA ++ F
Sbjct: 117 VKTKELI-----------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---GG 162
Query: 143 QVADEKFLVIINDMLASGEVPDLFTD--DEIENIVNNIAAEPEIPLTADLDPLTMLTDDA 200
Q + + E+ DL+ + +++ A L L T DA
Sbjct: 163 QGNTDDYF---------EELRDLYQTYHVLVGDLIKFSAET--------LSELIRTTLDA 205
Query: 201 TIAFWNNEGLPNDRMSTENATILVNSQRWPLMIDPQEVLRKPCAVFMAYVHSSVNQISV- 259
F +GL N W + +P P ++ + S I V
Sbjct: 206 EKVF--TQGL--------------NILEW--LENPS---NTPDKDYLLSIPISCPLIGVI 244
Query: 260 ---SYLLNERRYNYTTPKSFLEQI--------DLYAKLLKIKFDDNKSGITRFQNGLQKL 308
Y++ + +T P + L + + D +S + + L
Sbjct: 245 QLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 309 VSLGNEEKKVRAIEE--DVSYKQKVCAEDLEKAE----PALV---AAQEALDT-LDKNNL 358
+G VR E + S + + LE E P L QE + ++K N
Sbjct: 304 FFIG-----VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN- 357
Query: 359 TELKALKAPPQGVIAVCDAVAVLMASKKGKV----PKDLGWKGSQLKALKAPP---QGLC 411
+ L P + + L+ K V P+ L L+ KAP Q
Sbjct: 358 SHL-----PAGKQVEI-----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ--- 404
Query: 412 AWVINIITFYNVWTFVEPKRKALAAANAELAAA----SQKLAELKAKIASLEATLQELTD 467
+ I F +RK L +N L A S L I L +
Sbjct: 405 ----SRIPF--------SERK-LKFSNRFLPVASPFHSHLLVPASDLI---NKDLVKNNV 448
Query: 468 KFDAA-VKEKLFCQNQAEE-CAEKIDLADRLVNGLASENVRWKDSVLGLQQSALTL-PGD 524
F+A ++ ++ + +++R+V+ + V+W+ + L PG
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 525 ILLVTAFVSYVGCFT 539
S +G T
Sbjct: 509 -------ASGLGVLT 516
Score = 49.3 bits (117), Expect = 1e-05
Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 90/280 (32%)
Query: 270 YTTPKSF---LEQIDLYAK------LLKIKFDDNKSGITRF--QNGLQKL---------V 309
Y T K+ + D + K +L I ++ + F + G +++
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-KRIRENYSAMIFE 1694
Query: 310 SLGNEEKKVRAIEEDVSYKQKVC-----AEDL---EKAEPALVAAQEA-LDTLDKNNLT- 359
++ + + K I ++++ L + +PAL ++A + L L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 360 -----------ELKALKAPPQGVIAVCDAVAVLMASKKGK-----VPKD-LGWKGSQLKA 402
E AL + V+++ V V+ +G VP+D LG + A
Sbjct: 1755 ADATFAGHSLGEYAALAS-LADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 403 LKAPPQ---GLCA----WVINIITFYNVWTFVEPKRKALAAAN--------------AEL 441
+ P + +V+ + W VE N L
Sbjct: 1812 I-NPGRVAASFSQEALQYVVERVGKRTGW-LVEI-------VNYNVENQQYVAAGDLRAL 1862
Query: 442 AAASQKLAELKAK---IASLEATLQELTDKFDAAVKEKLF 478
+ L +K + I L+ +L ++ V+ LF
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLS--LEE----VEGHLF 1896
Score = 38.9 bits (90), Expect = 0.017
Identities = 39/216 (18%), Positives = 68/216 (31%), Gaps = 78/216 (36%)
Query: 8 DKPL-IYCHFVECVGDPK-------YMKMPDWATLHKILSETMTSYNEIVASMNLVLFED 59
+ P+ + HF G K Y M + ET+ +F++
Sbjct: 1667 NNPVNLTIHF----GGEKGKRIRENYSAM---------IFETIVDGKLK----TEKIFKE 1709
Query: 60 AMSHICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAF----ISTLE--PFQIQLKKNYG 113
H + +G LL + F ++ +E F+ LK
Sbjct: 1710 INEHSTSY--TFRSEKG--LL------------SATQFTQPALTLMEKAAFED-LKSKGL 1752
Query: 114 IPDLKIDLA--SL--Y--LKAGLKNAGIMFLMTD-----------SQVADEKFLVIIND- 155
IP A SL Y L + A +M + QVA + + ++
Sbjct: 1753 IPADAT-FAGHSLGEYAALASL---ADVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 156 -MLA--SGEVPDLFTDDEIENIVNNIAAEP----EI 184
M+A G V F+ + ++ +V + EI
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.3 bits (210), Expect = 1e-16
Identities = 116/739 (15%), Positives = 211/739 (28%), Gaps = 238/739 (32%)
Query: 714 TKEQNL-FKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIEIKVKEGKKT 772
T E +K L ED + D V ++ KS + +EI+ +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNF---------DCKDVQDMPKSILSKEEIDHIIMSK--- 58
Query: 773 AKKIDEAREQYRP----AAERASVIYFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKS 828
D R +++ ++ + E+ +IN Y+F
Sbjct: 59 ----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKF------------------- 93
Query: 829 DNLKGRVANLVESITFMTFQYTSRGLFERDKLIFMAQMTIQVKSLCMGDQHYHVLQQPKR 888
L + + MT Y +RD+L QV + Y+V +
Sbjct: 94 --LMSPIKTEQRQPSMMTRMYIE----QRDRL----YNDNQVFA------KYNVSRLQPY 137
Query: 889 KALAAANAELAAASQKLAELK--AKIAISMMK---K-----EIAREELDFLLRFPFQPGV 938
L Q L EL+ + I + K ++ + F +
Sbjct: 138 LKL----------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDF--KI 184
Query: 939 --------SSPVDFLTNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKL 990
+SP L L L +D + + + + +L
Sbjct: 185 FWLNLKNCNSPETVLEM--------LQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 991 PQEWKNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIE-FEQS------YR 1043
+ K+K L ++ + V+ NA+A F S R
Sbjct: 235 RRLLKSKPYENCLLVLL----N-----VQ------------NAKAWNAFNLSCKILLTTR 273
Query: 1044 ESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTD-LRNLHNVSLGQGQEVIAEETIQI-- 1100
+ LS T + M T D +++L L + + E +
Sbjct: 274 FKQ----VTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 1101 -------ASTKGHWAILQNVHLVKNWLPTLDKKMEASFE--KPHKNYRLFISAE--PASD 1149
S + A N V L +E+S +P + ++F P S
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 1150 PEYHIIPQGVLDSSI----KITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYK--SIL 1203
IP +L S+ I ++ + +L +E KE+ SI
Sbjct: 386 H----IPTILL--SLIWFDVIKSDVMVVVNKLHKYSL-------VEKQPKESTISIPSIY 432
Query: 1204 FALC-------YFHAVVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEANNNVPWED 1256
L H + + +++ + DL P+ D
Sbjct: 433 LELKVKLENEYALHRSIVDHYNI-----PKTFDSD--DLIP---------------PYLD 470
Query: 1257 LRYLFGEIMYGGHI-----TDDWD--RRLCRTYLEEYMNPELLE------GETKLAPGFP 1303
+Y + I + H+ + R + +++ LE A G
Sbjct: 471 -QYFYSHIGH--HLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSI 520
Query: 1304 APPNQDYQGYHTYIDESLPPESPILYGLHPNAEIGFLTTQAENVFK-----II-FELQPR 1357
Q + Y YI ++ P ++ + + FL EN+ ++ L
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAI-----LDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 1358 DTAAAQGSGVTREEKVRQV 1376
D A EE +QV
Sbjct: 576 DEAIF-------EEAHKQV 587
Score = 79.9 bits (196), Expect = 5e-15
Identities = 62/415 (14%), Positives = 130/415 (31%), Gaps = 114/415 (27%)
Query: 12 IYCHFVECVGDPKY-MKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMS----HICR 66
+ FVE V Y M T + S Y E L+ D ++ R
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD----RLYNDNQVFAKYNVSR 133
Query: 67 ---INRIMEA-----PRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGI---- 114
++ +A P N L+ GV GSGK ++ + +++Q K ++ I
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKMDFKIFWLN 188
Query: 115 ------PDLKID-LASLYLKAG-------------------LKNAGIMFLMT-------- 140
P+ ++ L L + ++ L +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 141 ------DSQVADE-----KFLVI-----INDMLASG--------EVPDLFTDDEIENIVN 176
+++ + K L+ + D L++ T DE+++++
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 177 NIAAEP--EIPLTA-DLDPL------TMLTDD-ATIAFWNNEGLPNDRMSTENATILVNS 226
++P +P + D AT W + + D+++T + L
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--VNCDKLTTIIESSLNV- 365
Query: 227 QRWPLMIDPQEVLR--KPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYA 284
++P E + +VF H +S+ + + + + + L+
Sbjct: 366 ------LEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDVIKS--DVMVVVNK--LHK 413
Query: 285 KLLKIKFDDNKSGITRFQNGLQKLVSLGNEEKKV-RAIEEDVSYKQKVCAEDLEK 338
L K K + +L E + R+I + + + ++DL
Sbjct: 414 YSLVEK--QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Score = 62.2 bits (150), Expect = 1e-09
Identities = 88/670 (13%), Positives = 185/670 (27%), Gaps = 242/670 (36%)
Query: 875 MGDQHYH------VLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREELDF 928
G+ Y V + K M K +++EE+D
Sbjct: 11 TGEHQYQYKDILSVFEDAFVD-----------------NFDCKDVQDMPKSILSKEEIDH 53
Query: 929 LLRFPFQPGVSSPVDFLTNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKD 988
++ S L TL L K E +K++E E
Sbjct: 54 IIM---SKDAVSGTLRLFWTL---------------LSKQEEMV----QKFVE----EVL 87
Query: 989 KLPQEWKNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIEFEQSYRESSST 1048
++ ++ S ++ +P MT Y+ R ++ Y ++
Sbjct: 88 RINYKFL-MSPIKT----EQRQPSMMT------------RMYIEQR----DRLYNDNQVF 126
Query: 1049 TPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSL----GQGQEVIAEETIQIASTK 1104
V + + + + +LR NV + G G+ +A + +
Sbjct: 127 AKYN------VSRLQPYLKLRQAL---LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 1105 G------HW-------------AILQN--VHLVKNWLPTLDK----KMEASFEKPHKNYR 1139
W +LQ + NW D K+ + R
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-R 236
Query: 1140 LFISAEPASDPEYH---IIPQGVLDSSI-----------------KITN--EPPTGMQAN 1177
L Y ++ V ++ ++T+ T +
Sbjct: 237 LL------KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 1178 LHKALDNFTQ-EDLEMCSK-----------EAEYKSILFALCYFHAVVAERRKFGPQGWN 1225
L T E + K E + L +++AE + G W+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRL----SIIAESIRDGLATWD 345
Query: 1226 RSYPFNVGDL--TISSLV----------LYNYL---EANNNVP-------WEDLRYLFGE 1263
N L I S + +++ L + ++P W D+
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 1264 IM------------------YGGH-------ITDDWDRRLCRTYLEEYMNPELLEGETKL 1298
++ + + + L R+ ++ Y P+ + + +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 1299 APGFPAPPNQD-----YQGYHTYIDESLPPES----PILYGLHPNAEIGFLTTQAENVFK 1349
PP D + G+H + PE +++ + FL + K
Sbjct: 466 ------PPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVF-----LDFRFL--EQ----K 506
Query: 1350 IIFELQPRDTAAAQGSGVTREEKVRQVLDEILDKCPD----AFNIKDMMGRVED---RTP 1402
I + + + + + + + + + I D P I D + ++E+ +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYK---PYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 1403 Y--II-VAFQ 1409
Y ++ +A
Sbjct: 564 YTDLLRIALM 573
Score = 57.6 bits (138), Expect = 4e-08
Identities = 91/638 (14%), Positives = 175/638 (27%), Gaps = 175/638 (27%)
Query: 143 QVADEKFLVIINDMLASGEVPDL----FTDDEIENIVNNIAAEPEIPLTADLDPLTMLTD 198
V ++ F +++ +V D+ + +EI++I+ + T+L+
Sbjct: 23 SVFEDAF---VDN-FDCKDVQDMPKSILSKEEIDHIIM----SKDAVSGTLRLFWTLLSK 74
Query: 199 DATIA--FWNNEGLPN-----DRMSTEN-----ATILVNSQRWPLMIDPQE-----VLRK 241
+ F N + TE T + QR L D Q V R
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 242 PCAVFMAYVHSSVNQISVSYLLNERRYNYTTP-------KSFLEQIDLYAKLLKIKFDDN 294
++ LL R K+++ + ++ K D
Sbjct: 135 QP----------YLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 295 ----KSG-ITRFQNGLQKLVSLGNEEKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQ-- 347
+ L+ L L + D S K+ ++ L+ ++
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 348 -EALDTLDK-NNLTELKALKAPPQGVI-----AVCDAVAVLMASKKGKVPKDLGWKGSQ- 399
L L N A + ++ V D ++ + + +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 400 ----LKALKAPPQGL----CA---WVINII-----TFYNVWTFVE-PKRKALAAANAELA 442
LK L PQ L ++II W + L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI----- 358
Query: 443 AASQKLAELKAKIASLE-ATLQELTDKF-----DAAVKEKLFC---QNQAEECAEKIDLA 493
+++ + LE A +++ D+ A + L + + +
Sbjct: 359 --------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--V 408
Query: 494 DRLVN-GLASENVRWKDSVLGL----QQSALTLPGDILLVTAFVSYVGCFTRSYRLDLLN 548
++L L + K+S + + + + L + L + V Y +
Sbjct: 409 NKLHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIVD-------HYN--IPK 457
Query: 549 KFWLPTIKKSKID--WF-----HEWPQEALESVS--------LKFL--------VKSCES 585
F + +D ++ H E E ++ +FL S
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 586 HRYGNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVLDNL--IGRNLIRKGKV 643
N L ++ + + D K + L+ I LD L I NLI
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPK-----YERLVNAI-------LDFLPKIEENLIC---- 561
Query: 644 VKIGEKEIDYNPNFKLILHTKLANPH----YKPEMQAQ 677
K D +L L + Q Q
Sbjct: 562 ----SKYTD-------LLRIALMAEDEAIFEEAHKQVQ 588
Score = 47.9 bits (113), Expect = 3e-05
Identities = 58/458 (12%), Positives = 125/458 (27%), Gaps = 140/458 (30%)
Query: 1189 DLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFN-VGDLT---ISSLVLYN 1244
D E + +YK IL F ++ V D+ +S + +
Sbjct: 8 DFETGEHQYQYKDILSVF---------EDAF-----VDNFDCKDVQDMPKSILSKEEIDH 53
Query: 1245 YLEANNNVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNP--ELLEGETKLAPGF 1302
+ + + V LF + + ++EE + + L K
Sbjct: 54 IIMSKDAV--SGTLRLFW-------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 1303 PAPPNQDYQGYHTYIDESLPPESPILYGLHPNAEIGFLTTQAENVFKI---IFELQPRDT 1359
P+ + Y + + Y + ++ + K+ + EL+P
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAK--YNV----------SRLQPYLKLRQALLELRPAKN 152
Query: 1360 AAAQ---GSGVTREEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYII--VAFQECERM 1414
GSG K + LD C +V+ + + I + + C
Sbjct: 153 VLIDGVLGSG-----K--TWV--ALDVCLSY--------KVQCKMDFKIFWLNLKNCNSP 195
Query: 1415 NILMSEIKRSLKELNLGLKGELTITTD-MEALEYSI--FMDTVPPSWEKRAYPSMLGLGG 1471
++ L++L + T +D ++ I + + + Y + L
Sbjct: 196 ETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---- 247
Query: 1472 WFADLMLRLKELENWVGDFQLPSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCLQCD 1531
L+L + V N + L C
Sbjct: 248 ----LVLL---------N------VQ---------------------NAKAWNAFNLSCK 267
Query: 1532 --VTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDAKLKELFPMMPVIYIKAITQ 1589
+T + ++ A + ++ ++ ++K L +K +
Sbjct: 268 ILLTTRFKQVTDFL--SAATTTHISLDHHSM-----TLTPDEVKSLL-------LKYLDC 313
Query: 1590 DKQDLRNMYECPVYKTRQRGPNYVWTFNLKTKEKPAKW 1627
QDL + P + ++ A W
Sbjct: 314 RPQDLPR-------EVLTTNPRRLSIIAESIRDGLATW 344
Score = 41.8 bits (97), Expect = 0.002
Identities = 47/402 (11%), Positives = 120/402 (29%), Gaps = 132/402 (32%)
Query: 1256 DLRYLFGEIM--YGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAPGFPAPPNQDY--- 1310
+ +Y + +I+ + D++D C+ +++ L + E +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFD---CK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 1311 --------QGYHTYIDESLPPESPILYGLHPNAEIGFLTTQAENVFKIIFELQPRDTAAA 1362
+ +++E L Y FL + + + R +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRIN----YK--------FLMSP--------IKTEQRQPSMM 108
Query: 1363 QGSGVTREEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYIIVAFQECERMNILMSEIK 1422
+ + +++ +++ K +N+ R++ +++
Sbjct: 109 TRMYIEQRDRLYND-NQVFAK----YNVS----RLQ------------------PYLKLR 141
Query: 1423 RSLKEL----NLGLKGELTITTDMEALEYSIFMDTVPPSWEKRAYPSMLGLG-GWFADLM 1477
++L EL N+ + G +LG G W A +
Sbjct: 142 QALLELRPAKNVLIDG-------------------------------VLGSGKTWVALDV 170
Query: 1478 LRLKELENWVGDFQLPSSV-WL-AGFFNPQSFLTAIMQSTARKNEWPLDKMCLQCDVTKK 1535
+++ ++ + WL N + ++Q K+ Q D
Sbjct: 171 CLSYKVQC-----KMDFKIFWLNLKNCNSPETVLEMLQ-----------KLLYQIDPNWT 214
Query: 1536 QREDFTQAPRDG-----AYVNGLYMEGARWDIALGVISDAKLKELFPMMPV---IYIKAI 1587
R D + + A + L ++ ++ L V+ + + + + + I +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--T 271
Query: 1588 TQDKQDLRNMYECPVYKTRQRGPNYVWTFNL-KTKEKPAKWT 1628
T+ KQ + T ++ T + K K+
Sbjct: 272 TRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 42.7 bits (101), Expect = 9e-04
Identities = 29/174 (16%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 315 EKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPPQGVIAV 374
++++ +E ++ KQ EDL+K EPA++ AQ A+ ++ K +L E++++ PP V
Sbjct: 34 DEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLA 93
Query: 375 CDAVAV----LMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVINII--TFYNVWTFVE 428
+++A+ K ++ + + + + + + + + + ++
Sbjct: 94 LESIALLLGESTTDWK-QIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNY 152
Query: 429 PKRKA----------LAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAA 472
A A A +++ L+ ++ LE ++ K +A
Sbjct: 153 EIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEAL 206
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 33.0 bits (75), Expect = 0.13
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 435 AAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEK--LFCQNQAEE--CAEKI 490
A E+ +++ ++K +A E +EL ++ +++K LF + E E +
Sbjct: 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELL 69
Query: 491 DLADRLVNGLASENVRWKD 509
L N +A +
Sbjct: 70 SKNYHLENEVARLKKLVGE 88
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 33.3 bits (76), Expect = 0.17
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 439 AELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRLVN 498
E+A+ ++ LK + EA +EL +K + ++EK Q Q + + + A+ +
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 499 GLASE 503
L
Sbjct: 73 QLIKN 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.27
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 20/45 (44%)
Query: 1125 KKMEASFEKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNE 1169
KK++AS K Y S P L +IK T E
Sbjct: 23 KKLQASL----KLY------ADDSAP--------AL--AIKATME 47
Score = 33.4 bits (75), Expect = 0.29
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 15/44 (34%)
Query: 88 KQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLK 131
KQ+L +L ++L+ + D +L +KA ++
Sbjct: 19 KQALKKLQ---ASLKLYA---------DD---SAPALAIKATME 47
Score = 30.7 bits (68), Expect = 2.2
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 770 KKTAKKIDEAREQYR----PA-AERASV 792
K+ KK+ + + Y PA A +A++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
Score = 28.8 bits (63), Expect = 8.3
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 1422 KRSLKELNLGLK-------GELTITTDME 1443
K++LK+L LK L I ME
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.6 bits (71), Expect = 1.7
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 16/69 (23%)
Query: 1130 SFE---KPHKNYR-LFISAEPASDPEYHIIPQGVLDSSIKITNEPPTGMQANLHKALDNF 1185
E K + L I+ EP + I +I++ + N ++
Sbjct: 150 GLELSDTKQKGKKFLVIAYEP-----FENI-------AIELPPNEILFSENNDMDNNNDG 197
Query: 1186 TQEDLEMCS 1194
E + C+
Sbjct: 198 VDELNKKCT 206
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding,
apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB:
1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Length = 94
Score = 29.7 bits (67), Expect = 1.7
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 1365 SGVTREEKVRQVLDEILDKCPDAFNI 1390
+ T++++ ++ IL K D++
Sbjct: 47 NEPTQQQRAAMLIKMILKKDNDSYVS 72
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.7 bits (72), Expect = 2.3
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEK 489
+ + + +L A +K+ + ++ LE L+E EK+ + ++ +
Sbjct: 935 RIEEEEERSQQLQAEKKKM---QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 490 IDLADRLVNGLASEN 504
I + + N L E
Sbjct: 992 ILIMEDQNNKLTKER 1006
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi
anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces
cerevisiae}
Length = 88
Score = 29.2 bits (65), Expect = 2.6
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 281 DLYAKLLKIKFDDNKSGITRFQNG-LQKLVSLGNEEKKVRAIEEDVSYKQK--------V 331
+ K+L N I +QK + + +E +R+++ + +
Sbjct: 5 EALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLEL 64
Query: 332 CAEDLEKAEPALVAAQEALDTLDKNN 357
+DLE+ L+ +D L+ ++
Sbjct: 65 SHQDLERIVGLLL-----MDMLEHHH 85
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 28.7 bits (65), Expect = 3.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 444 ASQKLAELKAKIASLEATLQELTDKFDAAVKE 475
S +L++L+ ++A+ EA L++L D
Sbjct: 1 GSCQLSQLQCQLAAKEAKLRDLEDSLARERDT 32
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family
member 1; tropomysoin, overlap complex, coiled-coils,
contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB:
3mud_C*
Length = 75
Score = 28.4 bits (63), Expect = 3.7
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 439 AELAAASQKLAELKAKIASLEATLQELTDK----FDAAVKEKLFCQNQAEE 485
A + A +K+ LK + ++ F +L CQ E
Sbjct: 2 ASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGE 52
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 30.7 bits (69), Expect = 4.0
Identities = 12/58 (20%), Positives = 17/58 (29%)
Query: 882 VLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREELDFLLRFPFQPGVS 939
VL P + A A L AA++ L K R + + V
Sbjct: 106 VLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARALLGYGVVVR 163
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 30.7 bits (70), Expect = 4.2
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 435 AAANAELAAASQKLAELKAKIASLEATLQELTDKF 469
A E++A+++++ I L+E+ ++
Sbjct: 274 NARLQEISASTEEVTSRVQTIRENVQMLKEIVARY 308
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 29.6 bits (66), Expect = 4.5
Identities = 11/70 (15%), Positives = 28/70 (40%)
Query: 434 LAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLA 493
L + A+ SQK + + +I L L+E + + A + + ++ +++
Sbjct: 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117
Query: 494 DRLVNGLASE 503
++ E
Sbjct: 118 KLKYKAISEE 127
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles,
endocytosis/exocytosis complex; 2.40A {Saccharomyces
cerevisiae}
Length = 399
Score = 30.6 bits (68), Expect = 4.6
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 18/188 (9%)
Query: 1267 GGHITDDWDRRLCRTYLE-------EYMNPELLEGETKLAPGFPAPPNQDYQG-YHTYID 1318
G H+ D L + YL E++ L + E + PP+ D G
Sbjct: 1 GSHMGDKEKETLFKDYLNLIVVKMTEWIG-NLEKAEFDVFLERSTPPHSDSDGLLFL--- 56
Query: 1319 ESLPPESPILYG-LHPNAEIGFLTTQAENVFKIIFELQPRDTAAAQGSGVTREEKVRQVL 1377
+ + E+ T QA+ + ++ T + E++++ +
Sbjct: 57 ----DGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQI 112
Query: 1378 DEILDKCPDAFNIKDMMGRVEDRTPYIIVAFQECERMNILMSEIKRSLKELNLGLKGELT 1437
+ D +I Y+I + + I +L + E
Sbjct: 113 NYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKL-VSKVYEKQ 171
Query: 1438 ITTDMEAL 1445
IT +E
Sbjct: 172 ITNHLEGT 179
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 4.7
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEK 489
+ + L + L + ++ ++ SL+ + +L + EK + E +
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK---KTIEEWADKY 1017
Query: 490 IDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDI 525
++LV+ L +N K L + +I
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis,
isopropylmalate isomerase, LEUD, amino-acid
biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB:
3h5h_A 3h5e_A
Length = 171
Score = 29.8 bits (68), Expect = 5.0
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 160 GEVPDLFTDDEIENIVNNIAAEPEIPLTADLDPLTMLTDDATIAF 204
G + D++E + I P + +TA+L + + F
Sbjct: 112 GLLAAEVAQDDVELLWKLIEQSPGLEITANLQDRIITAATVVLPF 156
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 29.7 bits (67), Expect = 5.5
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKF 469
+E AA AE A +++LA KA+IA LEA L E+ ++
Sbjct: 40 LEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHRY 82
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 29.6 bits (67), Expect = 5.6
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 435 AAANAELAAASQKLAELKAKIASLEATLQELTDKF 469
+L A Q+ L+ ++ + E L+ L DK+
Sbjct: 8 NTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKY 42
>3r8n_N 30S ribosomal protein S14; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N
2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N
2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N
2vhp_N 2ykr_N ...
Length = 100
Score = 28.3 bits (64), Expect = 5.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 428 EPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVK 474
E KR ALA K AELKA I+ + A+ ++ +++A +K
Sbjct: 9 EVKRVALADKYFA------KRAELKAIISDVNASDED---RWNAVLK 46
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo
sapiens} PDB: 3q7l_A 3q7g_A 3qmk_A*
Length = 219
Score = 29.8 bits (66), Expect = 5.7
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 263 LNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLGNEEKKVRAIE 322
L ERR + E + + D ++ FQ+ LQ L + E++
Sbjct: 37 LEERRMRQIN-EVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQ----R 91
Query: 323 EDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKA 366
++ +V A ++ AL AL L AL+
Sbjct: 92 LVETHATRVIALINDQRRAALEGFLAALQADPPQAERVLLALRR 135
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 30.4 bits (68), Expect = 6.5
Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 16/138 (11%)
Query: 1118 NWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYHIIPQG-VLDSSIKITNEPPTGMQA 1176
++P LD++ E F+K + A D + I G V K+ +EP +
Sbjct: 1016 PFVPVLDRRFEIFFKKDSLWQSEHLEAVVDQDVQRTCILHGPVAAQFTKVIDEPIKSIMD 1075
Query: 1177 NLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDLT 1236
+H + + FG +
Sbjct: 1076 GIHDGHIKKLLHQYYGDDESK---------------IPAVEYFGGESPVDVQSQVDSSSV 1120
Query: 1237 ISSLVLYNYLEANNNVPW 1254
++ + + W
Sbjct: 1121 SEDSAVFKATSSTDEESW 1138
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 29.9 bits (67), Expect = 6.6
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 1418 MSEIKRSLKELNLGLKGELTITTDMEALEYSIFMDTVPPSWEK-RAYPSMLGLGGWFADL 1476
E++R +++ + +T D+ + D P WE + + +
Sbjct: 114 FQEMQRIIRD-----GTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQEN 168
Query: 1477 MLRLKELENWVGDFQLPSSVWLAGFFNPQSFLTA 1510
R E ++ L A + P+ +L A
Sbjct: 169 TKRRVEAIPFLLPHDLSDLFAAAAWRRPELYLKA 202
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS
condensation domain, vibriobactin, biosynthetic protein;
2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Length = 436
Score = 30.3 bits (69), Expect = 6.7
Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 9/55 (16%)
Query: 163 PDLFTDDEIE-------NIVNNIAAEPEIPLTADLDPLTMLTDDATIAFWNNEGL 210
+ + + A + D+ L A A + +
Sbjct: 382 LASYPQSHWQSHCERFPRFFEQLLARFQQVE-QDVARLLA-EPAALAATTSTRAI 434
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 29.9 bits (67), Expect = 7.5
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 78 ALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMF 137
L GGS K + + +KKN + + L+A + I +
Sbjct: 21 GSLSACGGSKKST-----TTADGKPIVTVLVKKNANQEKMANMQWAKDLEADC-DCKIEW 74
Query: 138 LMTDSQVADEKFLVIINDMLASGEVPDLFTDD 169
+ ++ N LASG++ D+ +
Sbjct: 75 QEVTREAWAQQK----NATLASGDIADVNLNG 102
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.9 bits (68), Expect = 7.7
Identities = 4/43 (9%), Positives = 17/43 (39%)
Query: 430 KRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAA 472
+ + + + + + E++ ++ L +L ++F
Sbjct: 107 QDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 29.4 bits (67), Expect = 8.5
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 15/70 (21%)
Query: 432 KALAAANAELAAAS---QKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAE 488
KAL A+ A++ A + L L + +E +L D A ++ A
Sbjct: 25 KALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW--DATEK-------ALGGIG 75
Query: 489 KIDLADRLVN 498
+DL LVN
Sbjct: 76 PVDL---LVN 82
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell
WALL, peptidoglycan, inhibitor; HET: E08; 1.62A
{Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A*
2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A*
2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Length = 494
Score = 29.8 bits (67), Expect = 9.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1064 DVEAVGRKMGFTTDLRNLHNVSLGQGQEV 1092
DV+ KMG+ + ++ +G G EV
Sbjct: 237 DVKGYMEKMGYEIPEYGIESLPMGGGIEV 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 25,203,171
Number of extensions: 1584759
Number of successful extensions: 4025
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3951
Number of HSP's successfully gapped: 94
Length of query: 1637
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1530
Effective length of database: 3,714,246
Effective search space: 5682796380
Effective search space used: 5682796380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)