RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2649
         (1637 letters)



>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 81

 Score = 30.2 bits (68), Expect = 0.32
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 431 RKALAAANAELAAASQKLAELKAKIASLEATLQ 463
           RK L  A   L  +  K+  ++ ++       Q
Sbjct: 42  RKLLLTAQQMLQDSKTKIDIIRMQLRRALQADQ 74



 Score = 27.9 bits (62), Expect = 2.4
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 888 RKALAAANAELAAASQKLAELKAKI 912
           RK L  A   L  +  K+  ++ ++
Sbjct: 42  RKLLLTAQQMLQDSKTKIDIIRMQL 66


>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 86

 Score = 30.5 bits (69), Expect = 0.33
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 430 KRKALAAANAELAAASQKLAELKAKIASLEATL 462
             ++L      L  +S++L  L  ++  L A +
Sbjct: 54  LGRSLGPVELLLRGSSRRLDLLHQQLQELHAHV 86


>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
           thermophilus [TaxId: 274]}
          Length = 310

 Score = 28.8 bits (63), Expect = 5.8
 Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 967 KDIEAAAKRWKKYIEGETP 985
           +D+ AA +R   Y    TP
Sbjct: 4   QDLYAAFRRIAPYT-HRTP 21


>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
           coli [TaxId: 562]}
          Length = 94

 Score = 26.8 bits (59), Expect = 6.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 442 AAASQKLAELKAKIASLEATLQELTD 467
               ++L E++A+IA L++  + L  
Sbjct: 42  GIVQERLQEVEARIAELQSMQRSLQR 67


>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain
           {Escherichia coli [TaxId: 562]}
          Length = 58

 Score = 25.7 bits (57), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 424 WTFVEPKRKALAAANAELAAASQKLAELKAKI 455
             F+ P+ KA+ A    +     + AEL+AK+
Sbjct: 27  RNFLVPQGKAVPATKKNIEFFEARRAELEAKL 58


>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 283

 Score = 28.2 bits (61), Expect = 7.7
 Identities = 23/186 (12%), Positives = 54/186 (29%), Gaps = 4/186 (2%)

Query: 67  INRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYL 126
           I ++        L++G+  +GK S+  +   I+ L    I L          I      L
Sbjct: 21  IEKLKGLRAPITLVLGLRRTGKSSI--IKIGINELNLPYIYLDLRKFEERNYISYKDFLL 78

Query: 127 KAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPEIPL 186
           +   +   ++  +     A +    I+          +        N++ +     +  +
Sbjct: 79  ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNV 138

Query: 187 TADLDPLTMLTDDATIAFWNNEGLPNDRMSTENATILVNSQRWPLMIDPQEVLRKPCAVF 246
              LD    L     +       L     + +    +++     L+ D   V      +F
Sbjct: 139 IIVLDEAQELVKLRGVNLLPA--LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLF 196

Query: 247 MAYVHS 252
                +
Sbjct: 197 GRAFST 202


>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP
            {Ectothiorhodospira halophila [TaxId: 1053]}
          Length = 125

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 1370 EEKVRQVLDEILDKCPDAFNIKDMMGR 1396
            E  + ++ D  LD         D  G 
Sbjct: 12   ENTLAKMDDGQLDGLAFGAIQLDGDGN 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0743    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,078,475
Number of extensions: 295941
Number of successful extensions: 990
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 18
Length of query: 1637
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1539
Effective length of database: 1,062,056
Effective search space: 1634504184
Effective search space used: 1634504184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)