BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2650
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 29 DASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE----- 83
DA+T L LINA++FKG W F+PE T+ F DD + VQ+P+M+ + FY E
Sbjct: 170 DAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEFSDGS 229
Query: 84 -EAGEDGFKMLELPY 97
EAG +++LE+PY
Sbjct: 230 NEAG-GIYQVLEIPY 243
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 29 DASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE----- 83
DA+T L LINA++FKG W F+PE T+ F DD + VQ+P+M+ + FY E
Sbjct: 170 DAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEFSDGS 229
Query: 84 -EAGEDGFKMLELPY 97
EAG +++LE+PY
Sbjct: 230 NEAG-GIYQVLEIPY 243
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 29 DASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE----- 83
DA+T L LINA++FKG W F+PE T+ F DD + VQ+P+M+ + FY E
Sbjct: 170 DAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEFSDGS 229
Query: 84 -EAGEDGFKMLELPY 97
EAG +++LE+PY
Sbjct: 230 NEAG-GIYQVLEIPY 243
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSF--YMY 82
+D + A+T+L+L+NAI+FK +W V F+ E T PF L S V +M+++D+F +
Sbjct: 203 SDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIM 262
Query: 83 EEAGEDGFKMLELPY 97
E+ FKM+ELPY
Sbjct: 263 EKM---NFKMIELPY 274
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
+NS+A +++ G + +V P S D+ TKL+ NA++FKG W F T++G F+
Sbjct: 140 VNSWA--EKETNGLITEVLP---EGSADSMTKLIFANALYFKGTWNEKFDESLTQEGEFH 194
Query: 62 LDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 97
L D N V P M K Y+ + DGFK+L LPY
Sbjct: 195 LLDGNKVTAPFMTSKKKQYV---SAYDGFKVLGLPY 227
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSF--YMY 82
+D + A+T+L+L+NAI+FK +W V F+ E T PF L S V +M+++D+F +
Sbjct: 191 SDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIM 250
Query: 83 EEAGEDGFKMLELPY 97
E+ FKM+ELPY
Sbjct: 251 EKM---NFKMIELPY 262
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSF--YMY 82
+D + A+T+L+L+NAI+FK +W V F+ E T PF L S V +M+++D+F +
Sbjct: 191 SDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIM 250
Query: 83 EEAGEDGFKMLELPY 97
E+ FKM+ELPY
Sbjct: 251 EKM---NFKMIELPY 262
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSF--YMY 82
+D + A+T+L+L+NAI+FK +W V F+ E T PF L S V +M+++D+F +
Sbjct: 183 SDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIM 242
Query: 83 EEAGEDGFKMLELPY 97
E+ FKM+ELPY
Sbjct: 243 EKM---NFKMIELPY 254
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE-- 83
+ D T L LINA++FKG W F+PE T+ F DD + VQ+P+M+ + FY E
Sbjct: 70 EDFDGVTNLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEFS 129
Query: 84 ----EAGEDGFKMLELPY 97
EAG +++LE+PY
Sbjct: 130 DGSNEAG-GIYQVLEIPY 146
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSF-YMYEEAG 86
+D TKLVL+NAI+FKG W F EAT+D PF L+ ++ V +M+ K F Y Y E
Sbjct: 154 VDNMTKLVLVNAIYFKGNWQQKFMKEATRDAPFRLNKKDTKTVKMMYQKKKFPYNYIE-- 211
Query: 87 EDGFKMLELPY 97
+ ++LELPY
Sbjct: 212 DLKCRVLELPY 222
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
S+D T++VL++AI+FKG W FK E T++ PF + + S V +M+ SF + A
Sbjct: 166 SVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAA 225
Query: 87 EDGFKMLELPYGIG 100
E K+LELPY G
Sbjct: 226 EK-MKILELPYASG 238
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 1 MINSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 60
+INS+ ++ Q G + +V S+D+ T +VL+NAI FKG W FK E T+ PF
Sbjct: 145 LINSW--VESQTNGIIRNVLQ---PSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPF 199
Query: 61 YLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGTYTQL 105
+ + S V +M+ F + A E K+LELP+ GT + L
Sbjct: 200 RVTEQESKPVQMMYQIGLFRVASMASEK-MKILELPFASGTMSML 243
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 1 MINSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 60
+INS+ ++ Q G + +V S+D+ T +VL+NAI FKG W FK E T+ PF
Sbjct: 144 LINSW--VESQTNGIIRNVLQ---PXSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPF 198
Query: 61 YLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGTYTQL 105
+ + S V +M+ F + A E K+LELP+ GT + L
Sbjct: 199 RVTEQESKPVQMMYQIGLFRVASMASEK-MKILELPFAXGTMSML 242
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 1 MINSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 60
+INS+ ++ Q G + +V S+D+ T +VL+NAI FKG W FK E T+ PF
Sbjct: 145 LINSW--VESQTNGIIRNVLQ---PSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPF 199
Query: 61 YLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGTYTQL 105
+ + S V +M+ F + A E K+LELP+ GT + L
Sbjct: 200 RVTEQESKPVQMMYQIGLFRVASMASEK-MKILELPFASGTMSML 243
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 1 MINSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 60
+INS+ ++ Q G + +V S+D+ T +VL+NAI FKG W FK E T+ PF
Sbjct: 145 LINSW--VESQTNGIIRNVLQ---PSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPF 199
Query: 61 YLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGTYTQL 105
+ + S V +M+ F + A E K+LELP+ GT + L
Sbjct: 200 RVTEQESKPVQMMYQIGLFRVASMASEK-MKILELPFASGTMSML 243
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 1 MINSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 60
+INS+ ++ Q G + +V S+D+ T +VL+NAI FKG W FK E T+ PF
Sbjct: 144 LINSW--VESQTNGIIRNVLQ---PSSVDSQTAMVLVNAIVFKGLWEKTFKDEDTQAMPF 198
Query: 61 YLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGTYTQL 105
+ + S V +M+ F + A E K+LELP+ GT + L
Sbjct: 199 RVTEQESKPVQMMYQIGLFRVASMASEK-MKILELPFASGTMSML 242
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
INS+ +K + G ++D+F LD+ LVL+N I FKG WT PF +T++ FY
Sbjct: 138 INSY--VKNKTQGKIVDLF-----SGLDSPAILVLVNYIFFKGTWTQPFDLASTREENFY 190
Query: 62 LDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GIGT 101
+D+T V+VP+M ++ S Y E +++++ Y G GT
Sbjct: 191 VDETTVVKVPMM-LQSSTISYLHDSELPCQLVQMNYVGNGT 230
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
INS+ +K + G ++D+F LD+ LVL+N I FKG WT PF +T++ FY
Sbjct: 139 INSY--VKNKTQGKIVDLFS-----GLDSPAILVLVNYIFFKGTWTQPFDLASTREENFY 191
Query: 62 LDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GIGT 101
+D+T V+VP+M ++ S Y E +++++ Y G GT
Sbjct: 192 VDETTVVKVPMM-LQSSTISYLHDSELPCQLVQMNYVGNGT 231
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
T ++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 154 TGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEF 213
Query: 85 AGEDG--FKMLELPY 97
DG + +LELPY
Sbjct: 214 TTPDGHYYDILELPY 228
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
T ++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 167 TGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEF 226
Query: 85 AGEDG--FKMLELPY 97
DG + +LELPY
Sbjct: 227 TTPDGHYYDILELPY 241
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
T ++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 152 TGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEF 211
Query: 85 AGEDG--FKMLELPY 97
DG + +LELPY
Sbjct: 212 TTPDGHYYDILELPY 226
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
T ++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 150 TGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEF 209
Query: 85 AGEDG--FKMLELPY 97
DG + +LELPY
Sbjct: 210 TTPDGHYYDILELPY 224
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
T ++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 154 TGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEF 213
Query: 85 AGEDG--FKMLELPY 97
DG + +LELPY
Sbjct: 214 TTPDGHYYDILELPY 228
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 1 MINSFALIKQQH-IGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGP 59
++N++ + QH I L+D + L+ T++VLINA++F KW VPF P T+
Sbjct: 135 LMNAWVEEQTQHKIQNLVD------PEILNNLTRVVLINALYFNAKWLVPFPPFHTRKSD 188
Query: 60 FYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGT 101
F+ VQV M++ + ++ Y E K+LELP+ G
Sbjct: 189 FHKSAKEVVQVDTMYLDEQYFNYYECHHLDAKLLELPFKGGA 230
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSF-YMYEEAG 86
+D TKLVL+NAI+FKG W F EAT + PF L+ + V +M+ K F Y Y E
Sbjct: 163 VDNMTKLVLVNAIYFKGNWKDKFMKEATTNAPFRLNKKDRKTVKMMYQKKKFAYGYIE-- 220
Query: 87 EDGFKMLELPY 97
+ ++LELPY
Sbjct: 221 DLKCRVLELPY 231
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 156 AVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTT 215
Query: 87 EDG--FKMLELPY 97
DG + +LELPY
Sbjct: 216 PDGHYYDILELPY 228
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 156 AVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTT 215
Query: 87 EDG--FKMLELPY 97
DG + +LELPY
Sbjct: 216 PDGHYYDILELPY 228
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 160 AVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTT 219
Query: 87 EDG--FKMLELPY 97
DG + +LELPY
Sbjct: 220 PDGHYYDILELPY 232
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 156 AVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTT 215
Query: 87 EDG--FKMLELPY 97
DG + +LELPY
Sbjct: 216 PDGHYYDILELPY 228
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 179 AVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTT 238
Query: 87 EDG--FKMLELPY 97
DG + +LELPY
Sbjct: 239 PDGHYYDILELPY 251
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 196 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 252
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 253 YQEGKF-RYRRVAE-GTQVLELPF 274
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D+LD +T+ VL+NAI+FKG W F E T D F++ +++VP M K Y +
Sbjct: 156 DALDETTRSVLVNAIYFKGSWKDKFNKERTMDRDFHVSKDKTIKVPTMIGKKDVR-YADV 214
Query: 86 GEDGFKMLELPY 97
E KM+E+ Y
Sbjct: 215 PELDAKMIEMSY 226
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 207 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 263
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 264 YQEGKF-RYRRVAE-GTQVLELPF 285
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
T ++ T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 154 TGAVQQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEF 213
Query: 85 AGEDG--FKMLELPY 97
DG + +LELPY
Sbjct: 214 TTPDGHYYDILELPY 228
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 196 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 252
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 253 YQEGKF-RYRRVAE-GTQVLELPF 274
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G W PF +T F+ D ++V VP+M + F E
Sbjct: 156 AVDQLTRLVLVNALYFNGCWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTT 215
Query: 87 EDG--FKMLELPY 97
DG + +LELPY
Sbjct: 216 PDGHYYDILELPY 228
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 196 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 252
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 253 YQEGKF-RYRRVAE-GTQVLELPF 274
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 196 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 252
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 253 YQEGKF-RYRRVAE-GTQVLELPF 274
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 196 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 252
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 253 YQEGKF-RYRRVAE-GTQVLELPF 274
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G+W PF +T F+ D ++V VP+M + F E
Sbjct: 156 AVDELTRLVLVNALYFSGQWKTPFLEASTHQRLFHKSDGSTVSVPMMAQSNKFNYTEFTT 215
Query: 87 EDGFK--MLELPY 97
DG + ++ELPY
Sbjct: 216 PDGLEYDVVELPY 228
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 192 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 248
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 249 YQEGKF-RYRRVAE-GTQVLELPF 270
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 196 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 252
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 253 YQEGKF-RYRRVAE-GTQVLELPF 274
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I+FKG W F PE T+ FY D S +M
Sbjct: 196 GRITDVIP---SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMM 252
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 253 YQEGKF-RYRRVAE-GTQVLELPF 274
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQVPLMFVKDSFY 80
L +T +VL+N IHFK +W PF P T+D F +D T +VQVP+M D +Y
Sbjct: 161 LKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMDQYY 214
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
INS+ +K Q G + ++ P S+D T++VL+NA++FKGKW PF+ + PF
Sbjct: 136 INSW--VKTQTKGKIPNLLP---EGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGLYPFR 190
Query: 62 LDDTNSVQVPLMFVKDSFYM-YEEAGEDGFKMLELPYG 98
++ V +M++++ + Y E + ++LELPY
Sbjct: 191 VNSAQRTPVQMMYLREKLNIGYIE--DLKAQILELPYA 226
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D+LD +T+ VL+NAI+FKG W F E T D F++ +++VP M K Y +
Sbjct: 156 DALDETTRSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKDVR-YADV 214
Query: 86 GEDGFKMLELPY 97
E KM+E+ Y
Sbjct: 215 PELDAKMIEMSY 226
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
INS+ +K Q G + ++ P S+D T++VL+NA++FKGKW PF+ + PF
Sbjct: 136 INSW--VKTQTKGKIPNLLP---EGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGLFPFR 190
Query: 62 LDDTNSVQVPLMFVKDSFYM-YEEAGEDGFKMLELPYG 98
++ V +M++++ + Y E + ++LELPY
Sbjct: 191 VNSAQRTPVQMMYLREKLNIGYIE--DLKAQILELPYA 226
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 67
I + G + DV P +++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 187 ISNKTEGRITDVIP---PQAINEFTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 243
Query: 68 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY 97
V LM ++S + Y E ++LELP+
Sbjct: 244 CSV-LMMYQESKFRYRRVAEST-QVLELPF 271
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQVPLMFVKDSFY 80
L +T +VL+N IHFK +W PF P T+D F +D T +VQVP+M + +Y
Sbjct: 160 LKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYY 213
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQVPLMFVKDSFY 80
L +T +VL+N IHFK +W PF P T+D F +D T +VQVP+M + +Y
Sbjct: 156 LKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYY 209
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
G + DV P +++++ T LVL+N I FKG W F PE T+ FY D S +M
Sbjct: 192 GRITDVIP---SEAINELTVLVLVNTILFKGLWKSKFSPENTRKELFYKADGESCSASMM 248
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ + F Y E G ++LELP+
Sbjct: 249 YQEGKF-RYRRVAE-GTQVLELPF 270
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQVPLMFVKDSFY 80
L +T +VL+N IHFK +W PF P T+D F +D T +VQVP+M + +Y
Sbjct: 161 LKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYY 214
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQVPLMFVKDSFY 80
L +T +VL+N IHFK +W PF P T+D F +D T +VQVP+M + +Y
Sbjct: 155 LKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQVPMMHQMEQYY 208
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSF 79
D ++ TKL+L++ + FKGKW PF P T+ F+LD +++VP+M+ + +F
Sbjct: 205 DEINPETKLILVDYVLFKGKWLTPFDPSFTEADTFHLDKYRAIKVPMMYREGNF 258
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 14 GYLMDVFP-----VFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSV 68
G + DV P V + ST LVL+N I+FKG W F PE T+ FY D S
Sbjct: 196 GRITDVIPSEAINVLVLVNTRTSTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESC 255
Query: 69 QVPLMFVKDSFYMYEEAGEDGFKMLELPY 97
+M+ + F Y E G ++LELP+
Sbjct: 256 SASMMYQEGKF-RYRRVAE-GTQVLELPF 282
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 24 FTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE 83
F+D LD+ +L+N I +G W +PF PE T++ FY+++T++V+VP+M S +
Sbjct: 153 FSD-LDSPASFILVNYIFLRGIWELPFSPENTREEDFYVNETSTVKVPMMVQSGSIGYFR 211
Query: 84 EA 85
++
Sbjct: 212 DS 213
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D T+LVL+NA++F G++ PF +T F+ D ++V VP+M + F E
Sbjct: 156 AVDQLTRLVLVNALYFNGQFKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTT 215
Query: 87 EDG--FKMLELPY 97
DG + +LELPY
Sbjct: 216 PDGHYYDILELPY 228
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 32 TKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDG-- 89
T+LVL+NA++FKG W F+PE TK F D S QVP++ F + +
Sbjct: 160 TRLVLVNAVYFKGLWKSRFQPENTKKRTFVAADGKSYQVPMLAQLSVFRCGSTSAPNDLW 219
Query: 90 FKMLELPY---GIGTYTQLPT 107
+ +ELPY I LPT
Sbjct: 220 YNFIELPYHGESISMLIALPT 240
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
L T L+ I+A++FK KW +PF+ E T D PFY+ T V V +M + + + E
Sbjct: 64 LSPDTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSMYGEAFNHASVKE 123
Query: 88 D--GFKMLELPY 97
F ++ELPY
Sbjct: 124 SFGNFSIIELPY 135
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
L T L+ I+A++FK KW +PF+ E T D PFY+ T V V +M + + + E
Sbjct: 119 LSPDTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSMYGEAFNHASVKE 178
Query: 88 D--GFKMLELPY 97
F ++ELPY
Sbjct: 179 SFGNFSIIELPY 190
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
L T L+ I+A++FK KW +PF+ E T D PFY+ T V V +M + + + E
Sbjct: 119 LSPDTCLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSMYGEAFNHASVKE 178
Query: 88 D--GFKMLELPY 97
F ++ELPY
Sbjct: 179 SFGNFSIIELPY 190
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D ++ TKL+L++ I FKGKW PF P T+ F+LD +++VP+M+ F
Sbjct: 201 DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPMMYGAGKF---AST 257
Query: 86 GEDGFK--MLELPY 97
+ F+ +L+LPY
Sbjct: 258 FDKNFRCHVLKLPY 271
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D ++ TKL+L++ I FKGKW PF P T+ F+LD +++VP+M+ F
Sbjct: 163 DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPMMYGAGKF---AST 219
Query: 86 GEDGFK--MLELPY 97
+ F+ +L+LPY
Sbjct: 220 FDKNFRCHVLKLPY 233
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M + Y E
Sbjct: 157 LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEE 216
Query: 88 DGFKMLELPY 97
++EL Y
Sbjct: 217 LSCTVVELKY 226
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M + Y E
Sbjct: 157 LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEE 216
Query: 88 DGFKMLELPY 97
++EL Y
Sbjct: 217 LSCTVVELKY 226
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M + Y E
Sbjct: 177 LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEE 236
Query: 88 DGFKMLELPY 97
++EL Y
Sbjct: 237 LSCTVVELKY 246
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M + Y E
Sbjct: 157 LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEE 216
Query: 88 DGFKMLELPY 97
++EL Y
Sbjct: 217 LSCTVVELKY 226
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M + Y E
Sbjct: 187 LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEE 246
Query: 88 DGFKMLELPY 97
++EL Y
Sbjct: 247 LSCTVVELKY 256
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D ++ TKL+L++ I FKGKW PF P T+ F+LD +++VP+M+ F
Sbjct: 201 DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPMMYGAGKF---AST 257
Query: 86 GEDGFK--MLELPY 97
+ F+ +L+LPY
Sbjct: 258 FDKNFRCHVLKLPY 271
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 1 MINSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 60
+IN + +++Q G + ++ LD T +VL+N I+FK KW VPF P T F
Sbjct: 157 LINDY--VRKQTQGMIKEL-----VSDLDKRTLMVLVNYIYFKAKWKVPFDPLDTFKSEF 209
Query: 61 YLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 97
Y V VP+M ++D Y E ++EL Y
Sbjct: 210 YCGKRRPVIVPMMSMEDLTTPYFRDEELSCTVVELKY 246
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M + Y E
Sbjct: 176 LDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYFRDEE 235
Query: 88 DGFKMLELPY 97
++EL Y
Sbjct: 236 LSCTVVELKY 245
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
+++D T ++L N I F+ +W F P TK+ F+L+ +SV+VP+MF + Y
Sbjct: 194 ENIDPGTVMLLANYIFFRARWKHEFDPNVTKEEDFFLEKNSSVKVPMMF-RSGIYQVGYD 252
Query: 86 GEDGFKMLELPY 97
+ +LE+PY
Sbjct: 253 DKLSCTILEIPY 264
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 22 VFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM 81
+ +S++ TK++++NA +F GKW F TK+ PF L+ T++ V +M ++ +F M
Sbjct: 152 ILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKECPFRLNKTDTKPVQMMNMEATFCM 211
Query: 82 YEEAGEDGFKMLELPY 97
K++ELP+
Sbjct: 212 G-NIDSINCKIIELPF 226
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 22 VFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM 81
+ +S++ TK++++NA +F GKW F TK+ PF L+ T++ V +M ++ +F M
Sbjct: 147 ILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKEXPFRLNKTDTKPVQMMNMEATFXM 206
Query: 82 YEEAGEDGFKMLELPY 97
K++ELP+
Sbjct: 207 G-NIDSINXKIIELPF 221
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 15 YLMDVFPVFFTDS-------------------------LDASTKLVLINAIHFKGKWTVP 49
YL D FP F DS LD++ ++++N I FK KW
Sbjct: 124 YLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETS 183
Query: 50 FKPEATKDGPFYLDDTNSVQVPLMFVKDSFY 80
F + T++ FY+ V+VP+M +D ++
Sbjct: 184 FNHKGTQEQDFYVTSETVVRVPMMSREDQYH 214
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 151 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 196
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 153 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 198
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 210
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 157 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 202
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 22 VFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM 81
+ +S++ TK++++NA +F GKW F TK+ PF ++ T++ V +M ++ +F M
Sbjct: 161 ILADNSVNDQTKILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFSM 220
Query: 82 YEEAGEDGFKMLELPY 97
+ K++ELP+
Sbjct: 221 GNIDSINS-KIIELPF 235
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 15 YLMDVFPVFFTDS-------------------------LDASTKLVLINAIHFKGKWTVP 49
YL D FP F DS LD++ ++++N I FK KW
Sbjct: 117 YLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETS 176
Query: 50 FKPEATKDGPFYLDDTNSVQVPLMFVKDSFY 80
F + T++ FY+ V+VP+M +D ++
Sbjct: 177 FNHKGTQEQDFYVTSETVVRVPMMSREDQYH 207
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 161 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 206
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 160 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 206
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 152 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 198
>pdb|2OAY|A Chain A, Crystal Structure Of Latent Human C1-Inhibitor
Length = 390
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVK 76
DSL + T+LVL+NAI+ KW F P+ T+ PF+ ++ ++VP+M K
Sbjct: 169 DSLPSDTRLVLLNAIYLSAKWKTTFDPKKTRMEPFHFKNS-VIKVPMMNSK 218
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 176 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 15 YLMDVFPVFFTDS-------------------------LDASTKLVLINAIHFKGKWTVP 49
YL D FP F DS LD++ ++++N I FK KW
Sbjct: 142 YLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETS 201
Query: 50 FKPEATKDGPFYLDDTNSVQVPLMFVKDSFY 80
F + T++ FY+ V+VP+M +D ++
Sbjct: 202 FNHKGTQEQDFYVTSETVVRVPMMSREDQYH 232
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 186 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 231
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 15 YLMDVFPVFFTDS-------------------------LDASTKLVLINAIHFKGKWTVP 49
YL D FP F DS LD++ ++++N I FK KW
Sbjct: 110 YLADTFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETS 169
Query: 50 FKPEATKDGPFYLDDTNSVQVPLMFVKDSFY 80
F + T++ FY+ V+VP+M +D ++
Sbjct: 170 FNHKGTQEQDFYVTSETVVRVPMMSREDQYH 200
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 155 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 201
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 186 LDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 231
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 22 VFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
V LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 200 VDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 251
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++ ++T LVL+NAI+FKG+W F E TK+ F+ + + +M SF+ +
Sbjct: 178 NIGSNTTLVLVNAIYFKGQWEKKFNKEDTKEEKFWPNKNTYKSIQMMRQYTSFH-FASLE 236
Query: 87 EDGFKMLELPY 97
+ K+LE+PY
Sbjct: 237 DVQAKVLEIPY 247
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
DSL+ + + L+N I+FKG WT PF A PFY M FY Y+ +
Sbjct: 170 DSLEGAV-ITLVNVIYFKGLWTYPFPEVANNVKPFYGTRGKPTNAQYMEQNGQFY-YDNS 227
Query: 86 GEDGFKMLELPY 97
+ G ++L LPY
Sbjct: 228 ADLGAQILRLPY 239
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 24 FTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
F L ST L+L+NAIHF G W F P T+ F+LD+ +V V +M
Sbjct: 158 FLSELPDSTVLLLLNAIHFHGFWRTKFDPSLTQKDFFHLDERFTVSVDMM 207
>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 480
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
+++D +T+++++N I+FKG W F E T + F L++ V+V +M K +F +
Sbjct: 260 ENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQ 319
Query: 86 GEDGFKMLELPY--GIGTYTQLP 106
D +L+L Y GI +P
Sbjct: 320 ELDC-DILQLEYVGGISMLIVVP 341
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
+++D +T+++++N I+FKG W F E T + F L++ V+V +M K +F +
Sbjct: 260 ENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQ 319
Query: 86 GEDGFKMLELPY--GIGTYTQLP 106
D +L+L Y GI +P
Sbjct: 320 ELD-CDILQLEYVGGISMLIVVP 341
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 18 DVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKD 77
D F + LD T LVL+NAI+FKG+W F E T+ F+ V+V M + +
Sbjct: 148 DKIEKLFNEPLDPDTLLVLLNAIYFKGEWNTAFVKEHTEKRQFFNGGVTPVEVDTMRL-E 206
Query: 78 SFYMYEEAGEDGFKMLELPYGIGTYT 103
+ Y + +++ELPY YT
Sbjct: 207 ARIKYRFFDDLQVEVVELPYRGLDYT 232
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 67
+ QQ G L FFTD + T +L+N +F+ W PF+P T+ FY+
Sbjct: 164 VDQQSNGLLEK----FFTDDIPDDTAXILVNVFYFRDFWQSPFEPHYTRKEDFYISPDRQ 219
Query: 68 VQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGTYT 103
+ V ++ Y + ++GF+++ P +T
Sbjct: 220 ITVDXX-TQEGVXKYGKFEDEGFEIVSKPLNNTRFT 254
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 34 LVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKML 93
++L+ HFKG+W F T FYLD+ +V+VP+M + Y + K+
Sbjct: 185 ILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIA 244
Query: 94 ELP 96
+LP
Sbjct: 245 QLP 247
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 33 KLVLINAIHFKGKWTVPFKPEATKDGPFY 61
+ +L NA+ K +WT PF+ T++G F
Sbjct: 153 RAILTNALWAKARWTTPFEAHLTREGTFR 181
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 33 KLVLINAIHFKGKWTVPFKPEATKDGPF 60
+ +L NA+ K +WT PF+ T+ G F
Sbjct: 157 RAILTNALWAKARWTTPFEAHLTRAGTF 184
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 3 NSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTV-PFKPEATK--DGP 59
+S L IG LM F D A + I AI+ + + V P P+ K D
Sbjct: 203 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSK 262
Query: 60 FYLDDTNSVQVPLMFVKDSFYM 81
D +++ +MF KD FYM
Sbjct: 263 LTFDAITTIRGEVMFFKDRFYM 284
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 3 NSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTV-PFKPEATK--DGP 59
+S L IG LM F D A + I AI+ + + V P P+ K D
Sbjct: 123 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSK 182
Query: 60 FYLDDTNSVQVPLMFVKDSFYM 81
D +++ +MF KD FYM
Sbjct: 183 LTFDAITTIRGEVMFFKDRFYM 204
>pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 1224
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 63 DDTNSVQV-----PLMFVKDSFYMYEEAGEDGFKMLELPYGIGTY 102
DD+ S +V P+M + Y+ E D +K+ E P+ +G Y
Sbjct: 158 DDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGY 202
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
+ +D + LINA+ F +W ++ + + F N +V M +++ Y+ EE
Sbjct: 150 NKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTDVYGNRQKVEFMNSEENLYIEEE 208
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
+ +D + LINA+ F +W ++ + + F N +V M +++ Y+ EE
Sbjct: 165 NKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTDVYGNRQKVEFMNSEENLYIEEE 223
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
+ +D + LINA+ F +W ++ + + F N +V M +++ Y+ EE
Sbjct: 158 NKIDPEDVMYLINAVAFDAEWETVYEKASVHEDIFTDVYGNRQKVEFMNSEENLYIEEE 216
>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From
Thiobacillus Denitrificans To 2.15a
Length = 444
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 7 LIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHF 42
L + Q +GY + P F + +DA+ KL +++AI F
Sbjct: 186 LKEAQRLGY-AEADPTFDIEGIDAAHKLTILSAIAF 220
>pdb|4EO2|A Chain A, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|B Chain B, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|C Chain C, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|D Chain D, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|E Chain E, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|F Chain F, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|A Chain A, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|B Chain B, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|C Chain C, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|D Chain D, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|E Chain E, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|F Chain F, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|G Chain G, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|H Chain H, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|I Chain I, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|J Chain J, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|K Chain K, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|L Chain L, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
Length = 583
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLI------NAIHFKGKWTVP 49
I Q + + + +F + D STKL I N + FKG WT+P
Sbjct: 488 ISQDELNNVKKYYNMFGYECNDYSTKLSDITSMSICNWVQFKGIWTLP 535
>pdb|3B9N|A Chain A, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9N|B Chain B, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9O|A Chain A, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
pdb|3B9O|B Chain B, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
Length = 440
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 67 SVQVPLMFVKDSFYMYEEAGEDGFKMLE 94
SV P + Y+ EEAG DGF +++
Sbjct: 352 SVGTPKKVADEMQYLVEEAGIDGFNLVQ 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,483,710
Number of Sequences: 62578
Number of extensions: 138779
Number of successful extensions: 351
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 118
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)