RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2650
(108 letters)
>gnl|CDD|215699 pfam00079, Serpin, Serpin (serine protease inhibitor). Structure
is a multi-domain fold containing a bundle of helices
and a beta sandwich.
Length = 369
Score = 99.6 bits (249), Expect = 2e-26
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
SLD T+LVL+NAI+FKGKW PF PE TK+ PF++D+ +V+VP+M + +F E+
Sbjct: 147 GSLDPDTRLVLVNAIYFKGKWKTPFDPELTKEEPFHVDNGTTVKVPMMSQEGTFRYAEDE 206
Query: 86 GEDGFKMLELPYG 98
E G K+LELPY
Sbjct: 207 -ELGCKVLELPYK 218
>gnl|CDD|238101 cd00172, SERPIN, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 364
Score = 96.2 bits (240), Expect = 4e-25
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D+LD T+LVL+NAI+FKGKW PF PE T+ PFY+ + SVQVP+M+ F E+
Sbjct: 146 DALDPDTRLVLVNAIYFKGKWKTPFDPELTRKRPFYVSEGESVQVPMMYQTGKFRYAEDE 205
Query: 86 GEDGFKMLELPY 97
E ++LELPY
Sbjct: 206 -ELDAQVLELPY 216
>gnl|CDD|214513 smart00093, SERPIN, SERine Proteinase INhibitors.
Length = 359
Score = 92.2 bits (230), Expect = 1e-23
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 24 FTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE 83
LD+ T+LVL+NAI+FKGKW PF PE T++ F++D+T +V+VP+M + Y
Sbjct: 139 LLSDLDSDTRLVLVNAIYFKGKWKTPFDPELTREEDFHVDETTTVKVPMMSQTGRTFNYG 198
Query: 84 EAGEDGFKMLELPY 97
E ++LELPY
Sbjct: 199 HDEELNCQVLELPY 212
>gnl|CDD|238998 cd02043, plant_SERPIN, SERine Proteinase INhibitors (serpins),
plant specific subgroup. It has been suggested that
plant serpins play a role in defense against insect
predators. This subgroup corresponds to clade P of the
serpin superfamily. In general, serpins exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 381
Score = 81.3 bits (201), Expect = 1e-19
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
+NS+ +++ G + D+ P S+D+STKLVL NA++FKG W+ F TKD F+
Sbjct: 131 VNSW--VEKATNGLIKDILP---PGSVDSSTKLVLANALYFKGAWSSKFDASDTKDRDFH 185
Query: 62 LDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 97
L D SV+VP M + Y+ A DGFK+L LPY
Sbjct: 186 LLDGTSVRVPFMSSEKDQYV---AAFDGFKVLRLPY 218
>gnl|CDD|239013 cd02058, PAI-2, Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is
a serine protease inhibitor that belongs to the
ov-serpin branch of the serpin superfamily. It is is an
effective inhibitor of urinary plasminogen activator
(urokinase or uPA) and is involved in cell
differentiation, tissue growth and regeneration.
Length = 380
Score = 79.0 bits (195), Expect = 1e-18
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 8/97 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
INS+ +++Q G + ++ P S+D+ T+LVL+NAI+FKG W F E T++ PF
Sbjct: 133 INSW--VERQTEGKIQNLLPP---GSVDSLTRLVLVNAIYFKGNWEEKFLKENTRERPFR 187
Query: 62 LDDTNSVQVPLMFVKDSFYM-YEEAGEDGFKMLELPY 97
L+ + V +MF+K F + Y E E ++LELPY
Sbjct: 188 LNKNTTKPVQMMFLKKKFPITYIE--ELKAQVLELPY 222
>gnl|CDD|239004 cd02049, bacterial_SERPIN, SERine Proteinase INhibitors (serpins),
prokaryotic subgroup. Little information about specific
functions is available for this subgroup, most likely
they are inhibitory members of the serpin superfamily.
In general, serpins exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin and
antichymotrypsin, function as serine protease
inhibitors.
Length = 364
Score = 78.6 bits (194), Expect = 1e-18
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D +D + LINA++FKG W PF ++T + PFYL D ++ +VP M +F E
Sbjct: 146 DKIDPDDVMFLINAVYFKGDWQEPFDKQSTYEAPFYLPDGSTKEVPFMSRTGNFRYLE-- 203
Query: 86 GEDGFKMLELPYGIGTY 102
GF+ + LPYG G
Sbjct: 204 -TPGFQAVRLPYGDGRL 219
>gnl|CDD|239011 cd02056, alpha-1-antitrypsin_like, alpha-1-antitrypsin_like. This
family contains a variety of different members of clade
A of the serpin superfamily. They include the classical
serine proteinase inhibitors, alpha-1-antitrypsin and
alpha-1-antichymotrypsin, protein C inhibitor,
kallistatin, and noninhibitory serpins, like
corticosteroid and thyroxin binding globulins. In
general, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 361
Score = 74.2 bits (183), Expect = 4e-17
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
IN + ++++ G ++D+ LD+ T +VL+N I+FKGKW PF PE T++ F+
Sbjct: 129 INDY--VEKKTHGKIVDLV-----KDLDSDTVMVLVNYIYFKGKWEKPFDPELTQEEDFF 181
Query: 62 LDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 97
+D+ +V+VP+M + ++ E ++++PY
Sbjct: 182 VDEKTTVKVPMMHQTGRYDYLHDS-ELSCTVVQMPY 216
>gnl|CDD|238999 cd02044, ov-serpin, ovalbumin family of serpins (ov-serpins).
Family of closely related proteins, whose members can be
secreted (ovalbumin), cytosolic (leukocyte elastase
inhibitor, LEI), or targeted to both compartments
(plasminogen activator inhibitor 2, PAI-2). This
subgroup corresponds to clade B of the serpin
superfamily. In general, serpins exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones. Serpins are of medical interest because
mutants can cause blood clotting disorders, emphysema,
cirrhosis, and dementia.
Length = 370
Score = 71.0 bits (174), Expect = 8e-16
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
INS+ IK Q G + ++ P +S+D+ T +V++NA +FKGKW F E TK+ PF
Sbjct: 129 INSW--IKDQTKGKIENLLP---ENSVDSQTAMVVVNAAYFKGKWMKKFSEEETKESPFR 183
Query: 62 LDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGT 101
++ T + V +M+++ +F M K+LELP+
Sbjct: 184 VNKTETKPVQMMYMEATFNMGNIESL-KMKILELPFANKD 222
>gnl|CDD|239003 cd02048, neuroserpin, Neuroserpin is a inhibitory member of the
SERine Proteinase INhibitor (serpin) family that reacts
preferentially with tissue-type plasminogen activator
(tPA). It is located in neurons in regions of the brain
where tPA is also found, suggesting that neuroserpin is
the selective inhibitor of tPA in the central nervous
system (CNS). This subgroup corresponds to clade I of
the serpin superfamily.
Length = 388
Score = 69.1 bits (169), Expect = 4e-15
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 23 FFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMY 82
F + T+LVL+NA++FKG W F+PE T+ F DD + VQ+P+M+ + FY
Sbjct: 145 FSSRDFTPLTRLVLVNALYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYG 204
Query: 83 E---EAGEDG--FKMLELPY 97
E + E G +++LELPY
Sbjct: 205 EFSDGSNEAGGIYQVLELPY 224
>gnl|CDD|239006 cd02051, PAI-1_nexin-1, Plasminogen activator inhibitor-1_like.
Plasminogen activator inhibitor-1 (PAI-1) is the
primary, fast-acting inhibitor of plasminogen
activators. It is often bound to vitronectin, an
abundant component of the extracellular matrix in many
tissues. Protease nexin-1 is a potent serpin able to
inhibit thrombin, plasmin, and plasminogen activators.
PAI-1 and nexin-1 are members of the serpin superfamily
and represent clade E. In general, SERine Proteinase
INhibitors (serpins) exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin
and antichymotrypsin, function as serine protease
inhibitors which regulate blood coagulation cascades.
Non-inhibitory serpins perform many diverse functions
such as chaperoning proteins or transporting hormones.
Length = 377
Score = 68.3 bits (167), Expect = 7e-15
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 29 DASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGED 88
DA T+LVL+NA++FKG W F+PE+TK F+ D + QVP++ F + +
Sbjct: 156 DALTRLVLVNALYFKGLWKSRFQPESTKKRTFHAGDGKTYQVPMLAQLSVFRSGSASTPN 215
Query: 89 G--FKMLELPY---GIGTYTQLPT 107
G + ++ELPY I LPT
Sbjct: 216 GLWYNIIELPYHGESISMLIALPT 239
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 65.6 bits (160), Expect = 6e-14
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 14 GYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
+ DV P ++D +T LVL+NAI+FKG W F E T+ F+ VP+M
Sbjct: 150 NRITDVIP---EGAIDTNTVLVLVNAIYFKGLWKSKFDKENTRKDLFHKAPGEKCPVPMM 206
Query: 74 FVKDSFYMYEEAGEDGFKMLELPY 97
+ ++S + Y + ED ++LELPY
Sbjct: 207 Y-QESKFRYAKIPEDKVQVLELPY 229
>gnl|CDD|239014 cd02059, ovalbumin_like, The ovalbumin_like group of serpins
contains ovalbumin, the squamous cell carcinoma antigen
1 (SCCA1) and other closely related serpins of clade B
of the serpin superfamily. Ovalbumin, the major protein
component of avian egg white, is a non-inhibitory member
of SERine Proteinase INhibitorS (serpins). In contrast,
SCCA1 inhibits cysteine proteinases such as cathepsin S,
K, L, and papain, a so called cross-class serpin.
Length = 389
Score = 63.6 bits (155), Expect = 3e-13
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 1 MINSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 60
INS+ ++ Q G + ++F ++D+ST LVL+NAI+FKGKW F+ E T D PF
Sbjct: 145 KINSW--VESQTNGKIKNLFG---KGTIDSSTVLVLVNAIYFKGKWEKKFEKENTVDAPF 199
Query: 61 YLDDTNSVQVPLMFVKDSF---YMYEEAGEDGFKMLELPY---GIGTYTQLP 106
L++ + V +M+ F + E K+LELPY G+ LP
Sbjct: 200 KLNENENKPVQMMYQIGKFKLASIEEP----KMKILELPYAGGGLSMIVLLP 247
>gnl|CDD|239010 cd02055, PZI, Protein Z-dependent protease inhibitor (ZPI) is a
member of the serpin superfamily of proteinase
inhibitors (clade A10). ZPI inhibits coagulation factor
Xa , dependent on protein Z (PZ), a vitamin K-dependent
plasma protein. ZPI also inhibits factor XIa in a
process that does not require PZ. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms.
Length = 365
Score = 58.0 bits (140), Expect = 3e-11
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 67
IK++ G + ++F D +D +KL+L++ I FKGKW PF PE T+ F++D S
Sbjct: 136 IKKETKGKIPELF-----DEIDPESKLILLDYIFFKGKWLTPFDPEFTEIDTFHIDKYKS 190
Query: 68 VQVPLMFVKDSF 79
++VP+MF D F
Sbjct: 191 IKVPMMFGADKF 202
>gnl|CDD|227163 COG4826, COG4826, Serine protease inhibitor [Posttranslational
modification, protein turnover, chaperones].
Length = 410
Score = 54.9 bits (132), Expect = 4e-10
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
D + T+LVL NAI+F GKW F + T FY V +M + F E +
Sbjct: 187 DYIGPDTRLVLTNAIYFNGKWWPEFDKQMTGKRTFYPAKGEDKSVDMMSICGDFNYGETS 246
Query: 86 GEDGFKMLELPYG---IGTYTQLPT 107
K++ELPY + Y LP
Sbjct: 247 ---KAKIVELPYKGDDLSMYIVLPK 268
>gnl|CDD|239008 cd02053, alpha2AP, Alpha2-antiplasmin (alpha2AP) is the primary
inhibitor of plasmin, a proteinase that digests fibrin,
the main component of blood clots. Alpha2-Antiplasmin
forms an inactive 1 : 1 stoichiometric complex with
plasmin. It also rapidly crosslinks to fibrin during
blood clotting by activated coagulation factor XIII, and
as a consequence fibrin becomes more resistant to
fibrinolysis. Therefore alpha2AP is important in
modulating the effectiveness and persistence of fibrin
with respect to its susceptibility to digestion and
removal by plasmin. This subgroup corresponds to clade
F2 of the serpin superfamily.
Length = 351
Score = 53.6 bits (129), Expect = 1e-09
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 24 FTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 73
F L T L+L+NAIHFKG W F P T+ F+LDD +V V +M
Sbjct: 138 FLSDLPHDTVLLLLNAIHFKGFWRNKFDPSLTQRDAFHLDDDFTVSVEMM 187
>gnl|CDD|239005 cd02050, C1_inh, C1 inhibitor (C1-Inh) is a protease inhibitor of
the serpin family. It plays a pivotal role in regulating
the activation of the classical complement pathway and
of the contact system, via regulating bradykinin
formation, inhibiting factor XII and kallikrein of the
contact system, and via acting on factor XI in the
coagulation cascade. This subgroup corresponds to clade
G of the serpin superfamily.
Length = 352
Score = 52.1 bits (125), Expect = 4e-09
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVK 76
DSL + T+LVL+NA++F+ +W F + T PF + + V+VP+M+ K
Sbjct: 136 DSLPSETRLVLLNAVYFQAQWKKKFDTKHTVLLPFKRNG-DPVKVPVMYSK 185
>gnl|CDD|239007 cd02052, PEDF, Pigment epithelium-derived factor (PEDF)_like. PEDF
is non-inhibitory member of the Serpin superfamily. It
exhibits neurotrophic, neuroprotective and
antiangiogenic properties and is widely expressed in the
developing and adult nervous systems. This subgroup
corresponds to clade F1 of the serpin superfamily.
Length = 374
Score = 49.5 bits (118), Expect = 3e-08
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 2 INSFALIKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFY 61
IN + ++QQ G + + + ++L+ + +FKG+W F T F+
Sbjct: 140 INDW--VQQQTGGKVDRFVK-----EIPRNVSILLLGSAYFKGQWITKFDKRNTVLTDFH 192
Query: 62 LDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY--GIGTYTQLPT 107
LD+ +V VP+M ++ Y + K+ +LP G+ LP
Sbjct: 193 LDEQRTVVVPMMSDPNAPVRYGLDSDLNCKIAQLPLTGGVSIMFFLPD 240
>gnl|CDD|239012 cd02057, maspin_like, Maspin (mammary serine proteinase inhibitor),
a member of the serpin superfamily, with a multitude of
effects on cells and tissues at an assortment of
developmental stages. Maspin has tumor suppressing
activity against breast and prostate cancer. In general,
SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 372
Score = 46.1 bits (109), Expect = 5e-07
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
+S++ TK++++NA +F G W F TK+ PF ++ T + V +M ++ +F M
Sbjct: 148 NSVNDQTKILVVNAAYFVGNWMKKFPESETKECPFRVNKTETKPVQMMNLEATFSM-GYI 206
Query: 86 GEDGFKMLELPY 97
E K+LELP+
Sbjct: 207 DELNTKILELPF 218
>gnl|CDD|239009 cd02054, angiotensinogen, Angiotensinogen is part of the
renin-angiotensin system (RAS), which plays an important
role in blood pressure regulation, renal haemodynamics,
fluid and electrolyte homeostasis. It is also involved
in normal and abnormal growth processes. The growth
promoting actions of angiotensin have been shown in a
variety of cells and tissues. This subgroup represents
clade A8 of the serpin superfamily. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones.
Length = 372
Score = 46.0 bits (109), Expect = 6e-07
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 87
L + L+ ++HF+G W + E ++ F++D+ SV VP++ +F + +
Sbjct: 161 LSPDSDLLFATSVHFQGNWKTASQLEEPQE--FWVDNNTSVSVPMLSHTGTFKYLSDIQD 218
Query: 88 DGFKMLELPYG 98
+ F + +LP
Sbjct: 219 N-FSITQLPLS 228
>gnl|CDD|239002 cd02047, HCII, Heparin cofactor II (HCII) inhibits thrombin, the
final protease of the coagulation cascade. HCII is
allosterically activated by binding to cell surface
glycosaminoglycans (GAGs). The specificity of HCII for
thrombin is conferred by a highly acidic hirudin-like
N-terminal tail, which becomes available after GAG
binding for interaction with the anion-binding exosite I
of thrombin. This subgroup corresponds to clade D of the
serpin superfamily.
Length = 436
Score = 43.3 bits (102), Expect = 4e-06
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 27 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAG 86
++D +T ++++N I+FKG W F E T + F L++ V+VP+M K +F +
Sbjct: 219 NVDPATLMMILNCIYFKGTWENKFPVEMTHNRNFRLNEKEVVKVPMMQTKGNFLAAADP- 277
Query: 87 EDGFKMLELPY 97
E +L+LPY
Sbjct: 278 ELDCDILQLPY 288
>gnl|CDD|239001 cd02046, hsp47, Heat shock protein 47 (Hsp47), also called
colligin, because of its collagen binding ability, is a
chaperone specific for procollagen. It has been shown to
be essential for collagen biosynthesis, but its exact
function is still unclear. Hsp47 is a non-inhibitory
member of the SERPIN superfamily and corresponds to
clade H.
Length = 366
Score = 33.4 bits (76), Expect = 0.014
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 35 VLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLE 94
+++NA+ FK W F + + F + + +V VP+M + Y++ E+ +++E
Sbjct: 159 LIVNAMFFKPHWDEKFHHKMVDNRGFMVTRSYTVSVPMMHRTGLYGYYDDE-ENKLQIVE 217
Query: 95 LP 96
+P
Sbjct: 218 MP 219
>gnl|CDD|165039 PHA02660, PHA02660, serpin-like protein; Provisional.
Length = 364
Score = 33.1 bits (75), Expect = 0.016
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 32 TKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM--YEEAGEDG 89
T +++INA+ F G W PF + T F +D + V +M K F Y ++
Sbjct: 138 TSILIINAVQFNGLWKYPFLRKKTTMDIFNIDKVSFKYVNMMTTKGIFNAGRYHQS---- 193
Query: 90 FKMLELPYG 98
++E+PY
Sbjct: 194 -NIIEIPYD 201
>gnl|CDD|165258 PHA02948, PHA02948, serine protease inhibitor-like protein;
Provisional.
Length = 373
Score = 33.1 bits (75), Expect = 0.017
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 28 LDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFV 75
LD +T +IN I+FKG W PF T + F + + VP+M V
Sbjct: 159 LDNNTLWAIINTIYFKGTWQYPFDITKTHNASF-TNKYGTKTVPMMNV 205
>gnl|CDD|235740 PRK06203, aroB, 3-dehydroquinate synthase; Reviewed.
Length = 389
Score = 26.8 bits (60), Expect = 2.4
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 19 VFPVFFTDSLDASTKLVLINAIHFKGKWTVP 49
+PV+FT L + +L + G+
Sbjct: 13 EYPVYFTRDLFSPENPLLAEVLAADGEGKPK 43
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
decarboxylase protein; Provisional.
Length = 861
Score = 25.4 bits (56), Expect = 7.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 16/41 (39%)
Query: 11 QHIGYLMDVFPVF----------------FTDSLDASTKLV 35
Q +G+L DVF +F T SLD S LV
Sbjct: 334 QQVGFLADVFTLFKKHGLSVDLISSSETNVTVSLDPSENLV 374
>gnl|CDD|233501 TIGR01637, phage_arpU, phage transcriptional regulator, ArpU
family. This model represents a family of phage
proteins, including ArpU, called a putative autolysin
regulatory protein. ArpU was described as a regulator of
cellular muramidase-2 of Enterococcus hirae but appears
to have been cloned from a prophage. This family appears
related to the RinA family of bacteriophage
transcriptional activators and to some
sporulation-specific sigma factors. We propose that this
is a phage transcriptional activator family [Mobile and
extrachromosomal element functions, Prophage functions,
Regulatory functions, DNA interactions].
Length = 132
Score = 25.0 bits (55), Expect = 8.4
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 80 YMYEEAGEDGFKMLELPYGIGTY 102
Y+ + D M+EL Y Y
Sbjct: 92 YLEPDQKYDYQIMMELGYSHRQY 114
>gnl|CDD|200599 cd10977, CE4_PuuE_SpCDA1, Catalytic domain of bacterial PuuE
allantoinases, Schizosaccharomyces pombe chitin
deacetylase 1 (SpCDA1), and similar proteins.
Allantoinase (EC 3.5.2.5) can hydrolyze
allantoin((2,5-dioxoimidazolidin-4-yl)urea), one of the
most important nitrogen carrier for some plants, soil
animals, and microorganisms, to allantoate. DAL1 gene
from Saccharomyces cerevisiae encodes an allantoinase.
However, some organisms possess allantoinase activity
but lack DAL1 allantoinase. In those organisms, a
defective allantoinase gene, named puuE (purine
utilization E), encodes an allantoinase that
specifically catalyzes the hydrolysis of (S)-allantoin
into allantoic acid. PuuE allantoinase is related to
polysaccharide deacetylase (DCA), one member of the
carbohydrate esterase 4 (CE4) superfamily, that removes
N-linked or O-linked acetyl groups of cell wall
polysaccharides, and lacks sequence similarity with the
known DAL1 allantoinase that belongs to the
amidohydrolase superfamily. PuuE allantoinase functions
as a homotetramer. Its monomer is composed of a
7-stranded barrel with detectable sequence similarity to
the 6-stranded barrel NodB homology domain of DCAs. It
appears to be metal-independent and acts on a small
substrate molecule, which is distinct from the common
features of DCAs that are normally metal ion dependent
and recognize multimeric substrates. This family also
includes a chitin deacetylase 1 (SpCDA1) encoded by the
Schizosaccharomyces pombe cda1 gene. Although the
general function of chitin deacetylase (CDA) is the
synthesis of chitosan from chitin, a polymer of N-acetyl
glucosamine, to build up the proper ascospore wall, the
actual function of SpCDA1 might involve allantoin
hydrolysis. It is likely orthologous to PuuE
allantoinase, whereas it is more distantly related to
the CDAs found in other fungi, such as Saccharomyces
cerevisiae and Mucor rouxii. Those CDAs are similar with
rizobial NodB protein and are not included in this
family.
Length = 273
Score = 25.0 bits (55), Expect = 9.5
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 74 FVKDSF-YMYEEAGEDGFKML 93
++KD+F +YEE E KM+
Sbjct: 212 YLKDAFDVLYEEGAEAP-KMM 231
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.429
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,539,219
Number of extensions: 457107
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 32
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)