RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2650
(108 letters)
>d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 379
Score = 61.8 bits (149), Expect = 3e-13
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 67
+K G + ++ ++D T+LVL+NA++F G+W PF +T F+ D ++
Sbjct: 140 VKTHTKGMISNLLG---KGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGST 196
Query: 68 VQVPLMFVKDSFYMYE--EAGEDGFKMLELPYGIGTYT 103
V VP+M + F E + +LELPY T +
Sbjct: 197 VSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLS 234
>d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]}
Length = 385
Score = 57.2 bits (137), Expect = 1e-11
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
S+D+ T +VL+NAI FKG W FK E T+ PF + + S V +M+ F + A
Sbjct: 164 SSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMA 223
Query: 86 GEDGFKMLELPYGIGTYTQLP 106
+ K+LELP+ GT + L
Sbjct: 224 -SEKMKILELPFASGTMSMLV 243
>g1jjo.1 e.1.1.1 (A:,C:,E:) Neuroserpin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 334
Score = 55.2 bits (132), Expect = 6e-11
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 22 VFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM 81
+ + D T L LINA++FKG W F+PE T+ F DD + VQ+P+M+ + FY
Sbjct: 106 LVSPEDFDGVTNLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYY 165
Query: 82 YE-----EAGEDGFKMLELPYGIGTYTQL 105
E +++LE+PY + +
Sbjct: 166 GEFSDGSNEAGGIYQVLEIPYEGDEISMM 194
>g1as4.1 e.1.1.1 (A:,B:) Antichymotrypsin, alpha-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 369
Score = 54.5 bits (130), Expect = 1e-10
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 24 FTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE 83
LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M + Y
Sbjct: 148 LIKDLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMMSLHHLTIPYF 207
Query: 84 EAGEDGFKMLELPY 97
E ++EL Y
Sbjct: 208 RDEELSCTVVELKY 221
>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 426
Score = 54.1 bits (129), Expect = 1e-10
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 25 TDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 84
+++++ T LVL+N I+FKG W F PE T+ FY D S +M+ + F
Sbjct: 199 SEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKFRYRRV 258
Query: 85 AGEDGFKMLELPY 97
+G ++LELP+
Sbjct: 259 --AEGTQVLELPF 269
>d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]}
Length = 378
Score = 52.6 bits (125), Expect = 6e-10
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
+S++ TK++++NA +F GKW F TK+ PF ++ T++ V +M ++ +F M
Sbjct: 154 NSVNDQTKILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFSMGNID 213
Query: 86 GEDGFKMLELPYGIGTYTQL 105
K++ELP+ +
Sbjct: 214 -SINSKIIELPFQNKHLSMF 232
>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 381
Score = 51.4 bits (122), Expect = 1e-09
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
S+D T++VL+NA++FKGKW PF+ + PF ++ V +M++++ +
Sbjct: 154 GSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIE 213
Query: 86 GEDGFKMLELPYG 98
+ ++LELPY
Sbjct: 214 -DLKAQILELPYA 225
>g1hle.1 e.1.1.1 (A:,B:) Elastase inhibitor {Horse (Equus caballus)
[TaxId: 9796]}
Length = 375
Score = 50.6 bits (120), Expect = 2e-09
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
+D TKLVL+NAI+FKG W F EAT+D PF L+ ++ V +M+ K F Y
Sbjct: 151 GMVDNMTKLVLVNAIYFKGNWQQKFMKEATRDAPFRLNKKDTKTVKMMYQKKKFP-YNYI 209
Query: 86 GEDGFKMLELPY 97
+ ++LELPY
Sbjct: 210 EDLKCRVLELPY 221
>d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm
(Manduca sexta) [TaxId: 7130]}
Length = 376
Score = 49.8 bits (118), Expect = 5e-09
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 67
++ Q + ++ D+LD +T+ VL+NAI+FKG W F E T D F++ +
Sbjct: 139 VEDQTNNRIKNLVD---PDALDETTRSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKT 195
Query: 68 VQVPLMFVKDSFYMYEEAGEDGFKMLELPYGIGTYT 103
++VP M K + E KM+E+ Y +
Sbjct: 196 IKVPTMIGKKDVRYADVP-ELDAKMIEMSYEGDQAS 230
>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 358
Score = 49.1 bits (116), Expect = 9e-09
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
+LD++ ++++N I FK KW F + T++ FY+ V+VP M ++ Y Y
Sbjct: 145 KNLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTSETVVRVP-MMSREDQYHYLLD 203
Query: 86 GEDGFKMLELPYG 98
+++ +PY
Sbjct: 204 RNLSCRVVGVPYQ 216
>g1m93.1 e.1.1.1 (A:,B:,C:) Viral serpin crmA (cytokine response
modifier protein) {Cowpox virus [TaxId: 10243]}
Length = 322
Score = 48.2 bits (114), Expect = 2e-08
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 67
+ G + + + L T L+ I+A++FK KW +PF+ E T D PFY+ T
Sbjct: 94 VDIFTEGKINPLLD----EPLSPDTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEM 149
Query: 68 VQVPLMFVKDSFYMYEEAGE--DGFKMLELPYG 98
V V +M + + + E F ++ELPY
Sbjct: 150 VDVSMMSMYGEAFNHASVKESFGNFSIIELPYV 182
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 47.6 bits (112), Expect = 3e-08
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 24 FTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYE 83
T + ++L+ HFKG+W F T FYLD+ +V+VP+M + Y
Sbjct: 160 STKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYG 219
Query: 84 EAGEDGFKMLELPY 97
+ K+ +LP
Sbjct: 220 LDSDLSCKIAQLPL 233
>d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 372
Score = 44.5 bits (104), Expect = 4e-07
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 85
LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M F +
Sbjct: 152 KELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQ-HC 210
Query: 86 GEDGFKMLELPYGIGTY 102
+ +L + Y
Sbjct: 211 KKLSSWVLLMKYLGNAT 227
>g1mtp.1 e.1.1.1 (A:,B:) Thermopin {Thermobifida fusca [TaxId:
2021]}
Length = 355
Score = 44.1 bits (103), Expect = 5e-07
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 8 IKQQHIGYLMDVFPVFFTDSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 67
I G + ++ P ++ + +L NA+ K +WT PF+ T++G F
Sbjct: 129 IADATRGMIRELLP---QGAVTPDLRAILTNALWAKARWTTPFEAHLTREGTFRTPR-GP 184
Query: 68 VQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 98
+VP M + G++M+ L
Sbjct: 185 KRVPFMHRTKTMPYAT---ARGWRMVTLHAH 212
>d1yzha1 c.66.1.53 (A:8-211) tRNA
(guanine-N(7)-)-methyltransferase TrmB {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 204
Score = 24.8 bits (53), Expect = 2.2
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLD 63
+ L+A+ + V++N + K KW F D P +++
Sbjct: 4 ELLEANPQYVVLNPLEAKAKWRDLFG----NDNPIHVE 37
>d2fcaa1 c.66.1.53 (A:10-213) tRNA
(guanine-N(7)-)-methyltransferase TrmB {Bacillus
subtilis [TaxId: 1423]}
Length = 204
Score = 23.7 bits (50), Expect = 6.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 26 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLD 63
D L + + + N +KGKW F D P +++
Sbjct: 2 DFLAENADIAISNPADYKGKWNTVFG----NDNPIHIE 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.429
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,569
Number of extensions: 16593
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 18
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)