BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2651
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 16/232 (6%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
A + EN + SP S+ + +G+ GA GST + I+HS G K+
Sbjct: 36 ATGEDENILFSPLSIALAMGMMELGAQGSTQK------EIRHSMGYDSLKNGEEFSFLKE 89
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMN 234
+ ++ +KIAN ++ +N + FN+ + VDFSQ A A +N
Sbjct: 90 FSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAVANYIN 149
Query: 235 DWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSV 294
WV N+TN+ +KDL+ DA+T L LINA++FKG W F+PE T+ F DD + V
Sbjct: 150 KWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEV 209
Query: 295 QVPLMFVKDSFYMYE------EAGEDGFKMLELPY---GVSISFIIKSQVVP 337
Q+P+M+ + FY E EAG +++LE+PY +S+ ++ Q VP
Sbjct: 210 QIPMMYQQGEFYYGEFSDGSNEAG-GIYQVLEIPYEGDEISMMLVLSRQEVP 260
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 16/232 (6%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
A + EN + SP S+ + +G+ GA GST + I+HS G K+
Sbjct: 36 ATGEDENILFSPLSIALAMGMMELGAQGSTQK------EIRHSMGYDSLKNGEEFSFLKE 89
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMN 234
+ ++ +KIAN ++ +N + FN+ + VDFSQ A A +N
Sbjct: 90 FSNMVTAKESQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAVANYIN 149
Query: 235 DWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSV 294
WV N+TN+ +KDL+ DA+T L LINA++FKG W F+PE T+ F DD + V
Sbjct: 150 KWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEV 209
Query: 295 QVPLMFVKDSFYMYE------EAGEDGFKMLELPY---GVSISFIIKSQVVP 337
Q+P+M+ + FY E EAG +++LE+PY +S+ ++ Q VP
Sbjct: 210 QIPMMYQQGEFYYGEFSDGSNEAG-GIYQVLEIPYEGDEISMMLVLSRQEVP 260
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 26/237 (10%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGL---RIKHSE--TLLKDYKGIID 169
A + EN + SP S+ + +G+ GA GST + + + +K+ E + LK++ ++
Sbjct: 36 ATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEEFSFLKEFSNMVT 95
Query: 170 QLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAA 229
Y +KIAN ++ +N + FN+ + VDFSQ A
Sbjct: 96 AKESQYV-----------MKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAV 144
Query: 230 AKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLD 289
A +N WV N+TN+ +KDL+ DA+T L LINA++FKG W F+PE T+ F D
Sbjct: 145 ANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFSFTKD 204
Query: 290 DTNSVQVPLMFVKDSFYMYE------EAGEDGFKMLELPY---GVSISFIIKSQVVP 337
D + VQ+P+M+ + FY E EAG +++LE+PY +S+ ++ Q VP
Sbjct: 205 DESEVQIPMMYQQGEFYYGEFSDGSNEAG-GIYQVLEIPYEGDEISMMLVLSRQEVP 260
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 14/211 (6%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
N+ +N SP+S+ L L A GSTA M + L + +E + +K ++ +K
Sbjct: 63 TNRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLTAFNKPR 122
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKEMN 234
L+ AN+IY K L P Y + + +E KV+F + P + KE+N
Sbjct: 123 NNY--------SLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEIN 174
Query: 235 DWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSV 294
WV T KIK+L+ +D + A+T+L+L+NAI+FK +W V F+ E T PF L S
Sbjct: 175 TWVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSK 234
Query: 295 QVPLMFVKDSF--YMYEEAGEDGFKMLELPY 323
V +M+++D+F + E+ FKM+ELPY
Sbjct: 235 PVKMMYMRDTFPVLIMEKM---NFKMIELPY 262
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 112/210 (53%), Gaps = 14/210 (6%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
N+ +N SP+S+ L L A GSTA M + L + +E + +K ++ +K
Sbjct: 64 NRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFEQAENIHSGFKELLTAFNKPRN 123
Query: 177 GIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKEMND 235
L+ AN+IY K L P Y + + +E KV+F + P + KE+N
Sbjct: 124 NY--------SLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINT 175
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV T KIK+L+ +D + A+T+L+L+NAI+FK +W V F+ E T PF L S
Sbjct: 176 WVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVKFQAEKTSIQPFRLSKNKSKP 235
Query: 296 VPLMFVKDSF--YMYEEAGEDGFKMLELPY 323
V +M+++D+F + E+ FKM+ELPY
Sbjct: 236 VKMMYMRDTFPVLIMEKM---NFKMIELPY 262
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 14/237 (5%)
Query: 96 KEDFKPFSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIK 155
+E F+ Q+ + V + AN +N ++S FS+ LG + + G + + +++ L +
Sbjct: 12 RESNDQFTAQMFSEV---VKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALP 68
Query: 156 HSETLLKDYKGIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFN 215
+ + + KD +++ + KG+ +LK+A+KIY AK +ELN + + D F
Sbjct: 69 N-DNVTKDVFADLNRGVRAVKGV--------DLKMASKIYVAKGLELNDDFAAVSRDVFG 119
Query: 216 SELGKVDFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVP 275
SE+ VDF + AA +N WV + TN++IK+L+ D+LD +T+ VL+NAI+FKG W
Sbjct: 120 SEVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDK 179
Query: 276 FKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
F E T D F++ +++VP M K Y + E KM+E+ Y G S II
Sbjct: 180 FNKERTMDRDFHVSKDKTIKVPTMIGKKDVR-YADVPELDAKMIEMSYEGDQASMII 235
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 11/217 (5%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
AN +N ++S FS+ LG + + G + + +++ L + + + + KD +++ +
Sbjct: 29 ANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPN-DNVTKDVFADLNRGVRAV 87
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
KG+ +LK+A+KIY AK +ELN + + D F SE+ VDF + AA +N
Sbjct: 88 KGV--------DLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINK 139
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV + TN++IK+L+ D+LD +T+ VL+NAI+FKG W F E T D F++ +++
Sbjct: 140 WVEDQTNNRIKNLVDPDALDETTRSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIK 199
Query: 296 VPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
VP M K Y + E KM+E+ Y G S II
Sbjct: 200 VPTMIGKKDVR-YADVPELDAKMIEMSYEGDQASMII 235
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 13/221 (5%)
Query: 118 KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKG 177
+K N ++SPFS +L LA G G TAE + + L + G ++ K
Sbjct: 30 EKANFLVSPFSAATLLALAQSGCRGDTAEEIRQVLH----------FVGDREKAEGAVKE 79
Query: 178 IIDQLSKSP-ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
++ +L+ L ANKIY + + +Q AV+ + ++ VDFS+ AAK MN W
Sbjct: 80 VLSKLTNEEYTLHTANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEKNDAAKLMNAW 139
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQV 296
V T KI++L+ + L+ T++VLINA++F KW VPF P T+ F+ VQV
Sbjct: 140 VEEQTQHKIQNLVDPEILNNLTRVVLINALYFNAKWLVPFPPFHTRKSDFHKSAKEVVQV 199
Query: 297 PLMFVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQV 335
M++ + ++ Y E K+LELP+ G S++ ++ +Q+
Sbjct: 200 DTMYLDEQYFNYYECHHLDAKLLELPFKGGASLTIVLSNQI 240
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 26/230 (11%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKH-----SETLLKDYKGIIDQL 171
N+ +N SP+S+ L L A GSTA M + L S ++ + +G +
Sbjct: 28 NRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSSVARPSRGRPKRR 87
Query: 172 SKD------------YKGIIDQLSKSPE---LKIANKIYFAKDIELNPAYQTQAVDNFNS 216
D +K ++ +K L+ AN+IY K L P Y + + +
Sbjct: 88 RMDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKA 147
Query: 217 ELGKVDF-SQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVP 275
E KV+F + P + KE+N WV T KIK+L+ +D + A+T+L+L+NAI+FK +W V
Sbjct: 148 EPQKVNFKTAPEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVK 207
Query: 276 FKPEATKDGPFYLDDTNSVQVPLMFVKDSF--YMYEEAGEDGFKMLELPY 323
F+ E T PF L S V +M+++D+F + E+ FKM+ELPY
Sbjct: 208 FQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIMEKM---NFKMIELPY 254
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 26/230 (11%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKH-----SETLLKDYKGIIDQL 171
N+ +N SP+S+ L L A GSTA M + L S ++ + +G +
Sbjct: 48 NRDKNIFFSPWSISSALALTYLAAKGSTAREMAEVLHFTEAVRAESSSVARPSRGRPKRR 107
Query: 172 SKD------------YKGIIDQLSKSPE---LKIANKIYFAKDIELNPAYQTQAVDNFNS 216
D +K ++ +K L+ AN+IY K L P Y + + +
Sbjct: 108 RMDPEHEQAENIHSGFKELLTAFNKPRNNYSLRSANRIYVEKTYALLPTYLQLSKKYYKA 167
Query: 217 ELGKVDF-SQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVP 275
E KV+F + P + KE+N WV T KIK+L+ +D + A+T+L+L+NAI+FK +W V
Sbjct: 168 EPQKVNFKTAPEQSRKEINTWVEKQTESKIKNLLSSDDVKATTRLILVNAIYFKAEWEVK 227
Query: 276 FKPEATKDGPFYLDDTNSVQVPLMFVKDSF--YMYEEAGEDGFKMLELPY 323
F+ E T PF L S V +M+++D+F + E+ FKM+ELPY
Sbjct: 228 FQAEKTSIQPFRLSKNKSKPVKMMYMRDTFPVLIMEKM---NFKMIELPY 274
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 108/214 (50%), Gaps = 13/214 (6%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N ISP S+ L + G G+TA + K L E + ++ + ++K I
Sbjct: 28 NIFISPLSISSALAMIFLGTRGNTAAQVSKALYFDTVEDIHSRFQSLNADINKPGAPYI- 86
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKEMNDWVSN 239
LK+AN++Y K + + +EL VDF Q P A KE+N+WV
Sbjct: 87 -------LKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINEWVKG 139
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI +L+ +D TKLVL+NAI+FKG W F EAT+D PF L+ ++ V +M
Sbjct: 140 QTEGKIPELLVKGMVDNMTKLVLVNAIYFKGNWQQKFMKEATRDAPFRLNKKDTKTVKMM 199
Query: 300 FVKDSF-YMYEEAGEDGFKMLELPY-GVSISFII 331
+ K F Y Y E + ++LELPY G +S II
Sbjct: 200 YQKKKFPYNYIE--DLKCRVLELPYQGKELSMII 231
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 10/223 (4%)
Query: 114 LAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSK 173
+ A+K N + SP+ + VL + AG T + + K +E K + QLSK
Sbjct: 24 VQASKDRNVVFSPYGVSSVLAMLQMTTAGKTRRQIQDAMGFKVNE---KGTAHALRQLSK 80
Query: 174 DYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
+ G ++ E+ A+ I+ +D+EL + F + + +VDFS+ A +
Sbjct: 81 ELMGPWNK----NEISTADAIFVQRDLELVQGFMPHFFKLFQTMVKQVDFSEVERARFII 136
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
NDWV HT I DL+ ++D T+LVL+NA++F G+W PF +T F+ D ++
Sbjct: 137 NDWVERHTKGMINDLLAKGAVDELTRLVLVNALYFSGQWKTPFLEASTHQRLFHKSDGST 196
Query: 294 VQVPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
V VP+M + F E DG + ++ELPY G ++S I +
Sbjct: 197 VSVPMMAQSNKFNYTEFTTPDGLEYDVVELPYQGDTLSMFIAA 239
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 188 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 247
+K+AN ++ +N + FN+E+ VDFSQ A A +N WV N+TN +KD
Sbjct: 6 MKLANSLFVQNGFHVNEEFLQMLKMYFNAEVNHVDFSQNVAVANSINKWVENYTNSLLKD 65
Query: 248 LIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM 307
L+ + D T L LINA++FKG W F+PE T+ F DD + VQ+P+M+ + FY
Sbjct: 66 LVSPEDFDGVTNLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYY 125
Query: 308 YE------EAGEDGFKMLELPY---GVSISFIIKSQVVP 337
E EAG +++LE+PY +S+ + Q VP
Sbjct: 126 GEFSDGSNEAG-GIYQVLEIPYEGDEISMMLALSRQEVP 163
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 103 SIQLSTLVEWNLA------ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKH 156
SI L V NLA ++ N I SP S++VVL + + G+AG+T + ++ L+
Sbjct: 8 SISLQNQVSMNLAKHVITTVSQNSNVIFSPASINVVLSIIAAGSAGATKDQILSFLKFSS 67
Query: 157 SETLLKDYKGIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNS 216
++ L I+ + D + P+L +AN + K + P+++ D++ +
Sbjct: 68 TDQLNSFSSEIVSAVLADGSA-----NGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKA 122
Query: 217 ELGKVDF-SQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVP 275
+ DF S+ E+N W TN I +++ S D+ TKL+ NA++FKG W
Sbjct: 123 ASNQADFQSKAVEVIAEVNSWAEKETNGLITEVLPEGSADSMTKLIFANALYFKGTWNEK 182
Query: 276 FKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 323
F T++G F+L D N V P M K Y+ + DGFK+L LPY
Sbjct: 183 FDESLTQEGEFHLLDGNKVTAPFMTSKKKQYV---SAYDGFKVLGLPY 227
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 49 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 102
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 103 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 161
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I +L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 162 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 221
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 222 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 262
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I +L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I +L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I +L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 30 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 83
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 84 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 142
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I +L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 143 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 202
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 203 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 243
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 22 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 75
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 76 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 134
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 135 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 194
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 195 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 235
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 24 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 77
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 78 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 136
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 137 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 196
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 197 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 237
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 39 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 92
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 93 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 151
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I L+ ++D T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 152 WVKTHTKGMISHLLGTGAVDQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 211
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 212 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 252
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I +L+ ++D T+LVL+NA++F G W PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGCWKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 107/216 (49%), Gaps = 13/216 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N +ISP + VLG+ GA G T + + +R G+ L K K I+
Sbjct: 30 DNIVISPHGIASVLGMLQLGADGRTKKQLAMVMRY--------GVNGVGKILKKINKAIV 81
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+ +K + +AN ++ E+ + T+ D F E+ V+F P +A +N WV N
Sbjct: 82 SKKNKD-IVTVANAVFVKNASEIEVPFVTRNKDVFQCEVRNVNFEDPASACDSINAWVKN 140
Query: 240 HTNDKIKDLIKADSLDAS-TKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL 298
T D I +L+ D +D T+LVL+NA++FKG W F+PE TK F D S QVP+
Sbjct: 141 ETRDMIDNLLSPDLIDGVLTRLVLVNAVYFKGLWKSRFQPENTKKRTFVAADGKSYQVPM 200
Query: 299 MFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFII 331
+ F + + + +ELPY G SIS +I
Sbjct: 201 LAQLSVFRCGSTSAPNDLWYNFIELPYHGESISMLI 236
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 11/227 (4%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKD-YKGIIDQLSKDY 175
N N + SP S+ L L S GA G+T E +++GL+ +ET D ++G L +
Sbjct: 46 NPDTNIVFSPLSISAALALVSLGAKGNTLEEILEGLKFNLTETSEADIHQGFGHLLQR-- 103
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
++Q ++ + ++ K ++ +Q +A + +E DF QP A K +ND
Sbjct: 104 ---LNQPKDQVQISTGSALFIEKRQQILTEFQEKAKTLYQAEAFTADFQQPRQAKKLIND 160
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
+V T IK+L+ LD T +VL+N I+FK KW VPF P T FY V
Sbjct: 161 YVRKQTQGMIKELVS--DLDKRTLMVLVNYIYFKAKWKVPFDPLDTFKSEFYCGKRRPVI 218
Query: 296 VPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQVVPEMGRL 342
VP+M ++D Y E ++EL Y + S + ++P+ GR+
Sbjct: 219 VPMMSMEDLTTPYFRDEELSCTVVELKYTGNASALF---ILPDQGRM 262
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I L+ ++ T+LVL+NA++F G+W PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISHLLGTGAVQQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 13/218 (5%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
N N ISPFS+ + + G G+TA + K E + ++ + ++K
Sbjct: 33 NPAGNIFISPFSISSAMAMVFLGTRGNTAAQLSKTFHFNTVEEVHSRFQSLNADINKRGA 92
Query: 177 GIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKEMND 235
I LK+AN++Y K P + + ++L VDF A K +N
Sbjct: 93 SYI--------LKLANRLYGEKTYNFLPEFLVSTQKTYGADLASVDFQHASEDARKTINQ 144
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV T KI +L+ + +D TKLVL+NAI+FKG W F EAT + PF L+ +
Sbjct: 145 WVKGQTEGKIPELLASGMVDNMTKLVLVNAIYFKGNWKDKFMKEATTNAPFRLNKKDRKT 204
Query: 296 VPLMFVKDSF-YMYEEAGEDGFKMLELPY-GVSISFII 331
V +M+ K F Y Y E + ++LELPY G +S +I
Sbjct: 205 VKMMYQKKKFAYGYIE--DLKCRVLELPYQGEELSMVI 240
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N I SP S+ L S GA +T ++KGL+ +ET + I Q + +
Sbjct: 29 KNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET----SEAEIHQSFQHLLRTL 84
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+Q S +L + N ++ + + L + A + SE DF AA K +ND+V N
Sbjct: 85 NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKN 144
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DLIK LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M
Sbjct: 145 GTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMM 202
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQ 334
+ Y E ++EL Y S FI+ Q
Sbjct: 203 SLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQ 239
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N I SP S+ L S GA +T ++KGL+ +ET + I Q + +
Sbjct: 29 KNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET----SEAEIHQSFQHLLRTL 84
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+Q S +L + N ++ + + L + A + SE DF AA K +ND+V N
Sbjct: 85 NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKN 144
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DLIK LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M
Sbjct: 145 GTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMM 202
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQ 334
+ Y E ++EL Y S FI+ Q
Sbjct: 203 SLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQ 239
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N I SP S+ L S GA +T ++KGL+ +ET + I Q + +
Sbjct: 29 KNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET----SEAEIHQSFQHLLRTL 84
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+Q S +L + N ++ + + L + A + SE DF AA K +ND+V N
Sbjct: 85 NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKN 144
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DLIK LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M
Sbjct: 145 GTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMM 202
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQ 334
+ Y E ++EL Y S FI+ Q
Sbjct: 203 SLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQ 239
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N I SP S+ L S GA +T ++KGL+ +ET + I Q + +
Sbjct: 48 KNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET----SEAEIHQSFQHLLRTL 103
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+Q S +L + N ++ + + L + A + SE DF AA K +ND+V N
Sbjct: 104 NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKN 163
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DLIK LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M
Sbjct: 164 GTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMM 221
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQ 334
+ Y E ++EL Y S FI+ Q
Sbjct: 222 SLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQ 258
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N I SP S+ L S GA +T ++KGL+ +ET + I Q + +
Sbjct: 59 KNVIFSPLSISTALAFLSLGAHNTTLTEILKGLKFNLTET----SEAEIHQSFQHLLRTL 114
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+Q S +L + N ++ + + L + A + SE DF AA K +ND+V N
Sbjct: 115 NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKN 174
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DLIK LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M
Sbjct: 175 GTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMM 232
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQ 334
+ Y E ++EL Y S FI+ Q
Sbjct: 233 SLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQ 269
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+K N + SP+ + VL + G T + + + K D KG+ L Y
Sbjct: 26 ASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFK------IDDKGMAPALRHLY 79
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
K ++ +K E+ + I+ +D++L + F S + +VDFS+ A +ND
Sbjct: 80 KELMGPWNKD-EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIIND 138
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV HT I +L+ ++D T+LVL+NA++F G++ PF +T F+ D ++V
Sbjct: 139 WVKTHTKGMISNLLGKGAVDQLTRLVLVNALYFNGQFKTPFPDSSTHRRLFHKSDGSTVS 198
Query: 296 VPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFIIKS 333
VP+M + F E DG + +LELPY G ++S I +
Sbjct: 199 VPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAA 239
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 23/217 (10%)
Query: 117 NKKENAIISPFSLHVVLGL------ASFGAAGSTAE----AMMKGLRIKHSETLLKDYKG 166
N N ++SPFS+ ++L L SFG A S + ++++ I H+ + K
Sbjct: 36 NHNSNVVLSPFSVKILLTLIYEASDTSFGNAVSNTKRELSSVIQNDNIDHTRSYYKQLLE 95
Query: 167 IIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP 226
Q +KDY +L IA + IE+ YQ A ++++ L KV +S P
Sbjct: 96 SAQQDNKDY-----------DLNIATNFFVDDFIEVINKYQQIANTHYHAMLEKVSYSNP 144
Query: 227 PAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 286
A +N+WVS HTN ++++++ DSL+ + + L+N I+FKG WT PF A PF
Sbjct: 145 TQTAATINNWVSEHTNGRLREIVTPDSLEGAV-ITLVNVIYFKGLWTYPFPEVANNVKPF 203
Query: 287 YLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 323
Y M FY Y+ + + G ++L LPY
Sbjct: 204 YGTRGKPTNAQYMEQNGQFY-YDNSADLGAQILRLPY 239
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N I SP S+ L S GA +T ++KGL+ +ET + I Q + +
Sbjct: 49 KNVIFSPPSISTALAFLSLGAHNTTLTEILKGLKFNLTET----SEAEIHQSFQHLLRTL 104
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+Q S +L + N ++ + + L + A + SE DF AA K +ND+V N
Sbjct: 105 NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKN 164
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DLIK LD+ T +VL+N I FK KW +PF P+ T FYL V VP+M
Sbjct: 165 GTRGKITDLIK--DLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVMVPMM 222
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQ 334
+ Y E ++EL Y S FI+ Q
Sbjct: 223 SLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQ 259
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 12/230 (5%)
Query: 114 LAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSK 173
+A + K+N ISP S+ + L + S G G T +++GL +E + I Q +
Sbjct: 24 VALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLGFNLTERSETE----IHQGFQ 79
Query: 174 DYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
+ + S E+ + N ++ +EL ++ + SE+ ++F A++++
Sbjct: 80 HLHQLFAKSDTSLEMTMGNALFLDGSLELLESFSADIAHYYESEVLAMNFQDWATASRQI 139
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N +V N T KI DL LD+ LVL+N I FKG WT PF +T++ FY+D+T
Sbjct: 140 NSYVKNKTQGKIVDLFSG--LDSPAILVLVNYIFFKGTWTQPFDLASTREENFYVDETTV 197
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFIIKSQVVPEMGRL 342
V+VP+M ++ S Y E +++++ Y G F I +P+ G++
Sbjct: 198 VKVPMM-LQSSTISYLHDSELPCQLVQMNYVGNGTVFFI----LPDKGKM 242
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 12/230 (5%)
Query: 114 LAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSK 173
+A + K+N ISP S+ + L + S G G T +++GL +E + I Q +
Sbjct: 23 VALSPKKNIFISPVSISMALAMLSLGTCGHTRAQLLQGLGFNLTERSETE----IHQGFQ 78
Query: 174 DYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
+ + S E+ + N ++ +EL ++ + SE+ ++F A++++
Sbjct: 79 HLHQLFAKSDTSLEMTMGNALFLDGSLELLESFSADIKHYYESEVLAMNFQDWATASRQI 138
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N +V N T KI DL LD+ LVL+N I FKG WT PF +T++ FY+D+T
Sbjct: 139 NSYVKNKTQGKIVDLFSG--LDSPAILVLVNYIFFKGTWTQPFDLASTREENFYVDETTV 196
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFIIKSQVVPEMGRL 342
V+VP+M ++ S Y E +++++ Y G F I +P+ G++
Sbjct: 197 VKVPMM-LQSSTISYLHDSELPCQLVQMNYVGNGTVFFI----LPDKGKM 241
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 13/214 (6%)
Query: 114 LAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSK 173
L + ++N SP+S+ +G+A GA G T + + +GL S+ L D G++D
Sbjct: 22 LPSGPEKNVFFSPYSVSTAMGMAFAGARGQTQQELSQGLGF--SDVDLTD-AGVLDA--- 75
Query: 174 DYKGIIDQLSKSPE---LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFS-QPPAA 229
Y ++L +P L +AN + + L +Y++ +F +EL KVDF+ +P AA
Sbjct: 76 -YTHHTERLKSTPSNSTLDVANAAAIQRTLALLNSYESALQSSFGAELHKVDFAGEPQAA 134
Query: 230 AKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLD 289
+N+WV T+DKI+ L + LD T LVL+NAI+FKG+W F E T+ F+
Sbjct: 135 VDFVNNWVKRKTHDKIEKLFN-EPLDPDTLLVLLNAIYFKGEWNTAFVKEHTEKRQFFNG 193
Query: 290 DTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 323
V+V M + ++ Y + +++ELPY
Sbjct: 194 GVTPVEVDTMRL-EARIKYRFFDDLQVEVVELPY 226
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 118 KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKG 177
K+ N SP S+ LG+ GA +TA+ + K L H + + ++ G D G
Sbjct: 34 KENNIFYSPISITSALGMVLLGAKDNTAQQIKKVL---HFDQVTENTTGKAATYHVDRSG 90
Query: 178 --------IIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP 226
++ + +KS ELKIANK++ K Y + + + VDF+
Sbjct: 91 NVHHQFQKLLTEFNKSTDAYELKIANKLFGEKTYLFLQEYLDAIKKFYQTSVESVDFANA 150
Query: 227 PAAA-KEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGP 285
P + K++N WV + TN+KIK+LI ++ ++T LVL+NAI+FKG+W F E TK+
Sbjct: 151 PEESRKKINSWVESQTNEKIKNLIPEGNIGSNTTLVLVNAIYFKGQWEKKFNKEDTKEEK 210
Query: 286 FYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
F+ + + +M SF+ + + K+LE+PY G +S I+
Sbjct: 211 FWPNKNTYKSIQMMRQYTSFH-FASLEDVQAKVLEIPYKGKDLSMIV 256
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 8/212 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGL---RIKHSETLLKDYKGIIDQLSKDYK 176
EN I SP S+ +L + GA +T M K + +I L+ G + K
Sbjct: 26 ENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLK 85
Query: 177 GIIDQLSKSPE---LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
I+ +++K + L +A+K+Y + + P Y + + L V F A+E+
Sbjct: 86 DILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQAREL 145
Query: 234 -NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
N WV TN IK+ ++ S+D T++VL++AI+FKG W FK E T++ PF + +
Sbjct: 146 INSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQE 205
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 324
S V +M+ SF + A E K+LELPY
Sbjct: 206 SKPVQMMYQAGSFKVATVAAEK-MKILELPYA 236
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 9/229 (3%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA +T +M+ + D +K
Sbjct: 66 SKNNNDNIFLSPLSISTAFAMTKLGACNNTLTQLMEVFKFDTISEKTSDQIHFF--FAKL 123
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EM 233
+ + +KS EL AN+++ K I N YQ + + ++L +DF ++ +
Sbjct: 124 NCRLYRKANKSSELVSANRLFGDKSITFNETYQDISEVVYGAKLQPLDFKGNAEQSRLTI 183
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N W+SN T +I D+I +++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 184 NQWISNKTEGRITDVIPPQAINEFTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 243
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFIIKSQVVPEMGR 341
V LM ++S + Y E ++LELP+ G I+ ++ ++P++ +
Sbjct: 244 CSV-LMMYQESKFRYRRVAEST-QVLELPFKGDDITMVL---ILPKLEK 287
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 65 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 122
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + +KS +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 123 NCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 182
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 183 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 242
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 243 CSASMMYQEGKFR-YRRVAE-GTQVLELPFKGDDITMVL 279
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 71 NDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKLNC 128
Query: 177 GIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MND 235
+ + +KS +L AN+++ K + N YQ + + ++L +DF + ++ +N
Sbjct: 129 RLYRKAAKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINK 188
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 189 WVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCS 248
Query: 296 VPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 249 ASMMYQEGKF-RYRRVAE-GTQVLELPFKGDDITMVL 283
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 69 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 126
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + +KS +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 127 NCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 186
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 187 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 246
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 247 CSASMMYQEGKF-RYRRVAE-GTQVLELPFKGDDITMVL 283
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 69 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 126
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + KS +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 127 NCRLYRKAQKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 186
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 187 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 246
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 247 CSASMMYQEGKF-RYRRVAE-GTQVLELPFKGDDITMVL 283
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 69 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 126
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + KS +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 127 NCRLYRKAQKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 186
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 187 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 246
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 247 CSASMMYQEGKF-RYRRVAE-GTQVLELPFKGDDITMVL 283
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 82 NDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKLNC 139
Query: 177 GIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MND 235
+ + +K+ +L AN+++ K + N YQ + + ++L +DF + ++ +N
Sbjct: 140 RLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINK 199
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 200 WVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCS 259
Query: 296 VPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 260 ASMMYQEGKFR-YRRVAE-GTQVLELPFKGDDITMVL 294
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+ +N +SP+S+ + + G+ GST + M K L+ + D++ +
Sbjct: 22 ASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQ-------FNEVGAAADKIHSSF 74
Query: 176 KGIIDQLSKSPE---LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQ-PPAAAK 231
+ + ++ S L+ NK++ K Y ++SE VDF + A K
Sbjct: 75 RSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARK 134
Query: 232 EMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDT 291
++N WV T KI +L+ S+D T++VL+NA++FKGKW PF+ + PF ++
Sbjct: 135 KINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNSA 194
Query: 292 NSVQVPLMFVKDSFYM-YEEAGEDGFKMLELPYGVSISFII 331
V +M++++ + Y E + ++LELPY +S +
Sbjct: 195 QRTPVQMMYLREKLNIGYIE--DLKAQILELPYAGDVSMFL 233
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 69 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 126
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + +K+ +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 127 NCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 186
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 187 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 246
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 247 CSASMMYQEGKF-RYRRVAE-GTQVLELPFKGDDITMVL 283
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 69 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 126
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + +K+ +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 127 NCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 186
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 187 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 246
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 247 CSASMMYQEGKF-RYRRVAE-GTQVLELPFKGDDITMVL 283
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 69 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 126
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + +K+ +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 127 NCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 186
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I+FKG W F PE T+ FY D S
Sbjct: 187 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGES 246
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 247 CSASMMYQEGKF-RYRRVAE-GTQVLELPFKGDDITMVL 283
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 6/219 (2%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 65 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 122
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + +KS +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 123 NCRLYRKAAKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 182
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WVSN T +I D+I +++++ T LVL+N I FKG W F PE T+ FY D S
Sbjct: 183 NKWVSNKTEGRITDVIPSEAINELTVLVLVNTILFKGLWKSKFSPENTRKELFYKADGES 242
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 243 CSASMMYQEGKFR-YRRVAE-GTQVLELPFKGDDITMVL 279
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 115/228 (50%), Gaps = 16/228 (7%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKH--SETLLKDYKGIIDQLSKD 174
N N +SP S+ + GA ST + + +G + + L + + II +L+
Sbjct: 67 NPGRNIFLSPLSISTAFSMLCLGAQDSTLDEIKQGFNFRKMPEKDLHEGFHYIIHELT-- 124
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMN 234
Q ++ +L I N ++ + ++ + A + +++E +F A K++N
Sbjct: 125 ------QKTQDLKLSIGNTLFIDQRLQPQRKFLEDAKNFYSAETILTNFQNLEMAQKQIN 178
Query: 235 DWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSV 294
D++S T+ KI +LI +++D T ++L N I F+ +W F P TK+ F+L+ +SV
Sbjct: 179 DFISQKTHGKINNLI--ENIDPGTVMLLANYIFFRARWKHEFDPNVTKEEDFFLEKNSSV 236
Query: 295 QVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQVVPEMGRL 342
+VP+MF + Y + +LE+PY +I+ I ++P+ G+L
Sbjct: 237 KVPMMF-RSGIYQVGYDDKLSCTILEIPYQKNITAIF---ILPDEGKL 280
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 15/215 (6%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SPF + + + GA G T + +GL H + L G++ L +KG+ +
Sbjct: 38 NMVFSPFGMSLAMTGLMLGATGPTETQIKRGL---HLQALKPTKPGLLPSL---FKGLRE 91
Query: 181 QLSKSPELKIANK--IYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVS 238
LS++ EL + + KD ++ + + F++E ++F A + MN +++
Sbjct: 92 TLSRNLELGLTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFRNASQAKRLMNHYIN 151
Query: 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL 298
T KI L D ++ TKL+L++ I FKGKW PF P T+ F+LD +++VP+
Sbjct: 152 KETRGKIPKLF--DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPM 209
Query: 299 MFVKDSFYMYEEAGEDGFK--MLELPYGVSISFII 331
M+ F + F+ +L+LPY + + ++
Sbjct: 210 MYGAGKF---ASTFDKNFRCHVLKLPYQGNATMLV 241
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 15/215 (6%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SPF + + + GA G T + +GL H + L G++ L +KG+ +
Sbjct: 76 NMVFSPFGMSLAMTGLMLGATGPTETQIKRGL---HLQALKPTKPGLLPSL---FKGLRE 129
Query: 181 QLSKSPELKIANK--IYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVS 238
LS++ EL + + KD ++ + + F++E ++F A + MN +++
Sbjct: 130 TLSRNLELGLTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFRNASQAKRLMNHYIN 189
Query: 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL 298
T KI L D ++ TKL+L++ I FKGKW PF P T+ F+LD +++VP+
Sbjct: 190 KETRGKIPKLF--DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPM 247
Query: 299 MFVKDSFYMYEEAGEDGFK--MLELPYGVSISFII 331
M+ F + F+ +L+LPY + + ++
Sbjct: 248 MYGAGKF---ASTFDKNFRCHVLKLPYQGNATMLV 279
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 15/215 (6%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SPF + + + GA G T + +GL H + L G++ L +KG+ +
Sbjct: 76 NMVFSPFGMSLAMTGLMLGATGPTETQIKRGL---HLQALKPTKPGLLPSL---FKGLRE 129
Query: 181 QLSKSPELKIANK--IYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVS 238
LS++ EL + + KD ++ + + F++E ++F A + MN +++
Sbjct: 130 TLSRNLELGLTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFRNASQAKRLMNHYIN 189
Query: 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL 298
T KI L D ++ TKL+L++ I FKGKW PF P T+ F+LD +++VP+
Sbjct: 190 KETRGKIPKLF--DEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLDKYKTIKVPM 247
Query: 299 MFVKDSFYMYEEAGEDGFK--MLELPYGVSISFII 331
M+ F + F+ +L+LPY + + ++
Sbjct: 248 MYGAGKF---ASTFDKNFRCHVLKLPYQGNATMLV 279
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N SP S+ L + SFGA ST +++ L ++T + ++ ++ +I
Sbjct: 33 KNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMV-------EIQHGFQHLI 85
Query: 180 DQLS---KSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
L+ K EL+I N ++ K ++ + + +E+ DFS AA +E+N
Sbjct: 86 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSH 145
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQ 295
V T K+ LI+ L +T +VL+N IHFK +W PF P T+D F +D T +VQ
Sbjct: 146 VEMQTKGKVVGLIQ--DLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQ 203
Query: 296 VPLMFVKDSFY 306
VP+M D +Y
Sbjct: 204 VPMMHQMDQYY 214
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
A+ +N +SP+S+ + + G+ GST + M L+ + D++ +
Sbjct: 22 ASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMASVLQ-------FNEVGAAADKIHSSF 74
Query: 176 KGIIDQLSKSPE---LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQ-PPAAAK 231
+ + ++ S L+ NK++ K Y ++SE VDF + A K
Sbjct: 75 RSLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARK 134
Query: 232 EMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDT 291
++N WV T KI +L+ S+D T++VL+NA++FKGKW PF+ + PF ++
Sbjct: 135 KINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKTPFEKKLNGLFPFRVNSA 194
Query: 292 NSVQVPLMFVKDSFYM-YEEAGEDGFKMLELPYGVSISFII 331
V +M++++ + Y E + ++LELPY +S +
Sbjct: 195 QRTPVQMMYLREKLNIGYIE--DLKAQILELPYAGDVSMFL 233
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N SP S+ L + SFGA ST +++ L ++T + + + ++ +I
Sbjct: 27 KNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVE-------IQHGFQHLI 79
Query: 180 DQLS---KSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
L+ K EL+I N ++ K ++ + + +E+ DFS AA +E+N
Sbjct: 80 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSH 139
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQ 295
V T K+ LI+ L +T +VL+N IHFK +W PF P T+D F +D T +VQ
Sbjct: 140 VEMQTKGKVVGLIQ--DLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQ 197
Query: 296 VPLMFVKDSFY 306
VP+M + +Y
Sbjct: 198 VPMMHQMEQYY 208
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N SP S+ L + SFGA ST +++ L ++T + + + ++ +I
Sbjct: 28 KNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVE-------IQHGFQHLI 80
Query: 180 DQLS---KSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
L+ K EL+I N ++ K ++ + + +E+ DFS AA +E+N
Sbjct: 81 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSH 140
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQ 295
V T K+ LI+ L +T +VL+N IHFK +W PF P T+D F +D T +VQ
Sbjct: 141 VEMQTKGKVVGLIQ--DLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQ 198
Query: 296 VPLMFVKDSFY 306
VP+M + +Y
Sbjct: 199 VPMMHQMEQYY 209
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N SP S+ L + SFGA ST +++ L ++T + + + ++ +I
Sbjct: 32 KNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVE-------IQHGFQHLI 84
Query: 180 DQLS---KSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
L+ K EL+I N ++ K ++ + + +E+ DFS AA +E+N
Sbjct: 85 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSH 144
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQ 295
V T K+ LI+ L +T +VL+N IHFK +W PF P T+D F +D T +VQ
Sbjct: 145 VEMQTKGKVVGLIQ--DLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQ 202
Query: 296 VPLMFVKDSFY 306
VP+M + +Y
Sbjct: 203 VPMMHQMEQYY 213
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 13/191 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N SP S+ L + SFGA ST +++ L ++T + + + ++ +I
Sbjct: 33 KNIFFSPVSISAALVMLSFGACCSTQTEIVETLGFNLTDTPMVE-------IQHGFQHLI 85
Query: 180 DQLS---KSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
L+ K EL+I N ++ K ++ + + +E+ DFS AA +E+N
Sbjct: 86 CSLNFPKKELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSH 145
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKD-GPFYLDDTNSVQ 295
V T K+ LI+ L +T +VL+N IHFK +W PF P T+D F +D T +VQ
Sbjct: 146 VEMQTKGKVVGLIQ--DLKPNTIMVLVNYIHFKAQWANPFDPSKTEDSSSFLIDKTTTVQ 203
Query: 296 VPLMFVKDSFY 306
VP+M + +Y
Sbjct: 204 VPMMHQMEQYY 214
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP S+ + S GA G T + +++GL +E + I + ++ ++
Sbjct: 29 NILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 84
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 85 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 144
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 145 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 201
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 14/227 (6%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ N +N +SP S+ + GA T + +M+ + D +K
Sbjct: 69 SKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFF--FAKL 126
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
+ + +K+ +L AN+++ K + N YQ + + ++L +DF + ++ +
Sbjct: 127 NCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAI 186
Query: 234 NDWVSNHTNDKIKDLIKADSLD--------ASTKLVLINAIHFKGKWTVPFKPEATKDGP 285
N WVSN T +I D+I +++++ ST LVL+N I+FKG W F PE T+
Sbjct: 187 NKWVSNKTEGRITDVIPSEAINVLVLVNTRTSTVLVLVNTIYFKGLWKSKFSPENTRKEL 246
Query: 286 FYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
FY D S +M+ + F Y E G ++LELP+ G I+ ++
Sbjct: 247 FYKADGESCSASMMYQEGKFR-YRRVAE-GTQVLELPFKGDDITMVL 291
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP S+ + S GA G T + +++GL +E + I + ++ ++
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI----PEAQIHEGFQELLHTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP S+ + S GA G T + +++GL +E + I + ++ ++
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI----PEAQIHEGFQELLHTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP S+ + S GA G T + +++GL +E + I + ++ ++
Sbjct: 49 NILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S GA G T + +++GL +E + I + ++ ++
Sbjct: 49 NIFFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 6/187 (3%)
Query: 113 NLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLS 172
LA N SP S+ + S G T + +++GL +E + I +
Sbjct: 16 QLAHQSSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAAIHEGF 71
Query: 173 KDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE 232
++ ++Q +L N ++ ++ ++L + ++SE V+F A K+
Sbjct: 72 QELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQ 131
Query: 233 MNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
+ND+V T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D
Sbjct: 132 INDYVEKGTQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVT 189
Query: 293 SVQVPLM 299
+V+VP+M
Sbjct: 190 TVKVPMM 196
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G G T + +++GL +E + I + ++ ++
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKGDTHDEILEGLNFNLTEI----PEAQIHEGFQELLHTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETL---LKDYKGIIDQLSKDYK 176
EN P ++ L + GA ST + K +R ++ G + +
Sbjct: 26 ENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLR 85
Query: 177 GIIDQLSKSPEL---KIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
I++Q++K ++ +A+++Y + + P Y + + L ++F A+E+
Sbjct: 86 DILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAREL 145
Query: 234 -NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
N WV + TN I+++++ S+D+ T +VL+NAI FKG W FK E T+ PF + +
Sbjct: 146 INSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQE 205
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 324
S V +M+ F + A E K+LELP+
Sbjct: 206 SKPVQMMYQIGLFRVASMASEK-MKILELPFA 236
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETL---LKDYKGIIDQLSKDYK 176
EN P ++ L + GA ST + K +R ++ G + +
Sbjct: 26 ENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLR 85
Query: 177 GIIDQLSKSPEL---KIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
I++Q++K ++ +A+++Y + + P Y + + L ++F A+E+
Sbjct: 86 DILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAREL 145
Query: 234 -NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
N WV + TN I+++++ S+D+ T +VL+NAI FKG W FK E T+ PF + +
Sbjct: 146 INSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQE 205
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 324
S V +M+ F + A E K+LELP+
Sbjct: 206 SKPVQMMYQIGLFRVASMASEK-MKILELPFA 236
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETL---LKDYKGIIDQLSKDYK 176
EN P ++ L + GA ST + K +R ++ G + +
Sbjct: 26 ENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDXIEAQCGTSVNVHSSLR 85
Query: 177 GIIDQLSKSPEL---KIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
I++Q++K ++ +A+++Y + + P Y + + L ++F A+E+
Sbjct: 86 DILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAREL 145
Query: 234 -NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
N WV + TN I+++++ S+D+ T +VL+NAI FKG W FK E T+ PF + +
Sbjct: 146 INSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQE 205
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 324
S V +M+ F + A E K+LELP+
Sbjct: 206 SKPVQMMYQIGLFRVASMASEK-MKILELPFA 236
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex
With Cortisol
Length = 371
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 114 LAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSK 173
+A N +N +ISP S+ + L + S G+A + + ++ L +ET + I Q +
Sbjct: 25 VALNPDKNTLISPVSISMALAMVSLGSAQTQS---LQSLGFNLTET----SEAEIHQSFQ 77
Query: 174 DYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
++ Q E+ + N ++ + ++L ++ + SE +DF A++++
Sbjct: 78 YLNYLLKQSDTGLEMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFEDWTKASQQI 137
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N V + T KI+ + LD+ +L+N I +G W +PF PE T++ FY+++T++
Sbjct: 138 NQHVKDKTQGKIEHVFS--DLDSPASFILVNYIFLRGIWELPFSPENTREEDFYVNETST 195
Query: 294 VQVPLM 299
V+VP+M
Sbjct: 196 VKVPMM 201
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETL---LKDYKGIIDQLSKDYK 176
EN P ++ L + GA ST + K +R ++ G + +
Sbjct: 25 ENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLR 84
Query: 177 GIIDQLSKSPEL---KIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
I++Q++K ++ +A+++Y + + P Y + + L ++F A+E+
Sbjct: 85 DILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAREL 144
Query: 234 -NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
N WV + TN I+++++ S+D+ T +VL+NAI FKG W FK E T+ PF + +
Sbjct: 145 INSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKTFKDEDTQAMPFRVTEQE 204
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 324
S V +M+ F + A E K+LELP+
Sbjct: 205 SKPVQMMYQIGLFRVASMASEK-MKILELPFA 235
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 8/212 (3%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETL---LKDYKGIIDQLSKDYK 176
EN P ++ L + GA ST + K +R ++ G + +
Sbjct: 25 ENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDXIEAQCGTSVNVHSSLR 84
Query: 177 GIIDQLSKSPEL---KIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
I++Q++K ++ +A+++Y + + P Y + + L ++F A+E+
Sbjct: 85 DILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQAREL 144
Query: 234 -NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
N WV + TN I+++++ S+D+ T +VL+NAI FKG W FK E T+ PF + +
Sbjct: 145 INSWVESQTNGIIRNVLQPXSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQE 204
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 324
S V +M+ F + A E K+LELP+
Sbjct: 205 SKPVQMMYQIGLFRVASMASEK-MKILELPFA 235
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 30 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 85
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 86 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 145
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 146 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 202
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 26 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 81
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 82 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 141
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 142 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 198
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 38 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 93
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 94 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 153
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 154 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 210
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 14/196 (7%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRI---KHSET-LLKDYKGIIDQ 170
+A +N SP S+ + L + S GA ST +++GL + K SE L + ++ ++ +
Sbjct: 15 SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQE 74
Query: 171 LSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAA 230
L++ G +L + N ++ ++L + + + ++ +F A
Sbjct: 75 LNQPRDGF--------QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAM 126
Query: 231 KEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDD 290
K++ND+V+ T KI DL+K +LD++ ++++N I FK KW F + T++ FY+
Sbjct: 127 KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTS 184
Query: 291 TNSVQVPLMFVKDSFY 306
V+VP+M +D ++
Sbjct: 185 ETVVRVPMMSREDQYH 200
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 14/196 (7%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRI---KHSE-TLLKDYKGIIDQ 170
+A +N SP S+ + L + S GA ST +++GL + K SE L + ++ ++ +
Sbjct: 22 SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQE 81
Query: 171 LSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAA 230
L++ G +L + N ++ ++L + + + ++ +F A
Sbjct: 82 LNQPRDGF--------QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAM 133
Query: 231 KEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDD 290
K++ND+V+ T KI DL+K +LD++ ++++N I FK KW F + T++ FY+
Sbjct: 134 KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTS 191
Query: 291 TNSVQVPLMFVKDSFY 306
V+VP+M +D ++
Sbjct: 192 ETVVRVPMMSREDQYH 207
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 14/196 (7%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRI---KHSE-TLLKDYKGIIDQ 170
+A +N SP S+ + L + S GA ST +++GL + K SE L + ++ ++ +
Sbjct: 29 SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQE 88
Query: 171 LSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAA 230
L++ G +L + N ++ ++L + + + ++ +F A
Sbjct: 89 LNQPRDGF--------QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAM 140
Query: 231 KEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDD 290
K++ND+V+ T KI DL+K +LD++ ++++N I FK KW F + T++ FY+
Sbjct: 141 KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTS 198
Query: 291 TNSVQVPLMFVKDSFY 306
V+VP+M +D ++
Sbjct: 199 ETVVRVPMMSREDQYH 214
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 34 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 89
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 90 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 149
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 150 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 206
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 101/196 (51%), Gaps = 14/196 (7%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRI---KHSE-TLLKDYKGIIDQ 170
+A +N SP S+ + L + S GA ST +++GL + K SE L + ++ ++ +
Sbjct: 47 SAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQE 106
Query: 171 LSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAA 230
L++ G +L + N ++ ++L + + + ++ +F A
Sbjct: 107 LNQPRDGF--------QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAM 158
Query: 231 KEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDD 290
K++ND+V+ T KI DL+K +LD++ ++++N I FK KW F + T++ FY+
Sbjct: 159 KQINDYVAKQTKGKIVDLLK--NLDSNAVVIMVNYIFFKAKWETSFNHKGTQEQDFYVTS 216
Query: 291 TNSVQVPLMFVKDSFY 306
V+VP+M +D ++
Sbjct: 217 ETVVRVPMMSREDQYH 232
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 26 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 81
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 82 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 141
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 142 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 198
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 34 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 89
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 90 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 149
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 150 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 206
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 49 NILFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 59 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 114
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 115 QPDSQLQLTFGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 174
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 231
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 79 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 134
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 135 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 194
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 195 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 251
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 49 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 104
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 105 QPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 164
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 165 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 221
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N SP S+ + S G T + +++GL +E + I + ++ ++
Sbjct: 59 NIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEI----PEAQIHEGFQELLRTLN 114
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
Q +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 115 QPDSQLQLTTGNFLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKG 174
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T KI DL+K LD T L+N I FKGKW PF+ + T++ F++D +V+VP+M
Sbjct: 175 TQGKIVDLVK--ELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMM 231
>pdb|1XU8|A Chain A, The 2.8 A Structure Of A Tumour Suppressing Serpin
pdb|1XU8|B Chain B, The 2.8 A Structure Of A Tumour Suppressing Serpin
Length = 380
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 10/204 (4%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP L L LA GA G TA + + L ++ +KD ++ D ++
Sbjct: 32 NVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHFEN----VKDVPFGFQTVTSD----VN 83
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EMNDWVSN 239
+LS LK+ ++Y K + L+ + + + EL VDF K ++N+ + +
Sbjct: 84 KLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKD 143
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T+ ++++ +S++ TK++++NA +F GKW F TK+ PF L+ T++ V +M
Sbjct: 144 LTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKECPFRLNKTDTKPVQMM 203
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY 323
++ +F M K++ELP+
Sbjct: 204 NMEATFCMG-NIDSINCKIIELPF 226
>pdb|1WZ9|A Chain A, The 2.1 A Structure Of A Tumour Suppressing Serpin
pdb|1WZ9|B Chain B, The 2.1 A Structure Of A Tumour Suppressing Serpin
Length = 375
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 10/204 (4%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP L L LA GA G TA + + L ++ +KD ++ D ++
Sbjct: 27 NVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHFEN----VKDVPFGFQTVTSD----VN 78
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EMNDWVSN 239
+LS LK+ ++Y K + L+ + + + EL VDF K ++N+ + +
Sbjct: 79 KLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKD 138
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T+ ++++ +S++ TK++++NA +F GKW F TK+ PF L+ T++ V +M
Sbjct: 139 LTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFPESETKEXPFRLNKTDTKPVQMM 198
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY 323
++ +F M K++ELP+
Sbjct: 199 NMEATFXMG-NIDSINXKIIELPF 221
>pdb|1XQG|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQG|B Chain B, 3.10 A Crystal Structure Of Maspin, Space Group P 4 21 2
pdb|1XQJ|A Chain A, 3.10 A Crystal Structure Of Maspin, Space Group I 4 2 2
Length = 389
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP +L L LA GA G TA + + L ++ +KD ++ D ++
Sbjct: 41 NVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFEN----VKDVPFGFQTVTSD----VN 92
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EMNDWVSN 239
+LS LK+ ++Y K + L+ + + + EL VDF K ++N+ + +
Sbjct: 93 KLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKD 152
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T+ ++++ +S++ TK++++NA +F GKW F TK+ PF ++ T++ V +M
Sbjct: 153 LTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMM 212
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY 323
++ +F M + K++ELP+
Sbjct: 213 NMEATFSMGNIDSINS-KIIELPF 235
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 94/216 (43%), Gaps = 31/216 (14%)
Query: 118 KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKG 177
K EN ISP S+ VL + +GA GSTAE QLSK +
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAE-----------------------QLSKYVEK 48
Query: 178 IIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWV 237
D+ K NK+Y ++ + DNF + VDF+ +N V
Sbjct: 49 EADKNKDDISFKSMNKVYGRYSAVFKDSFLRKIGDNFQT----VDFTDC-RTVDAINKCV 103
Query: 238 SNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVP 297
T KI L+ + L T L+ I+A++FK KW +PF+ E T D PFY+ T V V
Sbjct: 104 DIFTEGKINPLLD-EPLSPDTCLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVS 162
Query: 298 LMFVKDSFYMYEEAGED--GFKMLELPYGVSISFII 331
+M + + + E F ++ELPY S ++
Sbjct: 163 MMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVV 198
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 15/215 (6%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N I SPF L V + G G T + GL ++ L +I L +K + +
Sbjct: 80 NVIFSPFGLSVAMVNLMLGTKGETKVQIENGLNLQA----LSQAGPLI--LPALFKKVKE 133
Query: 181 QLSKSPELKIANK--IYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVS 238
S + +L ++ + KD ++ Y + F+ E ++F A +N +
Sbjct: 134 TFSSNRDLGLSQGSFAFIHKDFDIKETYFNLSKKYFDIEYVSINFQNSSQARGLINHCIV 193
Query: 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL 298
T KI L D ++ TKL+L++ + FKGKW PF P T+ F+LD +++VP+
Sbjct: 194 KETEGKIPKLF--DEINPETKLILVDYVLFKGKWLTPFDPSFTEADTFHLDKYRAIKVPM 251
Query: 299 MFVKDSFYMYEEAGEDGFK--MLELPYGVSISFII 331
M+ + +F + F+ +L+LPY + + ++
Sbjct: 252 MYREGNF---TSTFDKKFRCHILKLPYQGNATMLV 283
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 94/216 (43%), Gaps = 31/216 (14%)
Query: 118 KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKG 177
K EN ISP S+ VL + +GA GSTAE QLSK +
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAE-----------------------QLSKYVEK 48
Query: 178 IIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWV 237
D+ K NK+Y ++ + DNF + VDF+ +N V
Sbjct: 49 EADKNKDDISFKSMNKVYGRYSAVFKDSFLRKIGDNFQT----VDFTDS-RTVDAINKSV 103
Query: 238 SNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVP 297
T KI L+ + L T L+ I+A++FK KW +PF+ E T D PFY+ T V V
Sbjct: 104 DIFTEGKINPLLD-EPLSPDTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVS 162
Query: 298 LMFVKDSFYMYEEAGED--GFKMLELPYGVSISFII 331
+M + + + E F ++ELPY S ++
Sbjct: 163 MMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVV 198
>pdb|1JMO|A Chain A, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 480
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
N +N I+P + +G+ S G G T E + L K Y+ I + +
Sbjct: 126 VNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYE--ITTIHNLF 183
Query: 176 KGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE 232
+ + +L + L+ N +Y K + ++T+ + + +E DFS P +K
Sbjct: 184 RKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISK- 242
Query: 233 MNDWVSNHTNDKIKDLIK--ADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDD 290
+NH K LIK +++D +T+++++N I+FKG W F E T + F L++
Sbjct: 243 ----TNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNE 298
Query: 291 TNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQVVP 337
V+V +M K +F + D +L+L Y IS +I VVP
Sbjct: 299 REVVKVSMMQTKGNFLAANDQELDC-DILQLEYVGGISMLI---VVP 341
>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
Length = 480
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
N +N I+P + +G+ S G G T E + L K Y+ I + +
Sbjct: 126 VNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYE--ITTIHNLF 183
Query: 176 KGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE 232
+ + +L + L+ N +Y K + ++T+ + + +E DFS P +K
Sbjct: 184 RKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISK- 242
Query: 233 MNDWVSNHTNDKIKDLIK--ADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDD 290
+NH K LIK +++D +T+++++N I+FKG W F E T + F L++
Sbjct: 243 ----TNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNE 298
Query: 291 TNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQVVP 337
V+V +M K +F + D +L+L Y IS +I VVP
Sbjct: 299 REVVKVSMMQTKGNFLAANDQELDC-DILQLEYVGGISMLI---VVP 341
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 120 ENAIISPFSLHVVLG--LASFGAAGSTAEAMMKGLRIKHSETLL------KDYKGIIDQL 171
+N + P + LG L S GA G T + K R+K + + ++ K + +L
Sbjct: 37 DNFLTCPLGILFTLGILLGSGGAQGRTGYQIGKTXRLKSTSSSWNSSEAQQEXKSLYQEL 96
Query: 172 SKDYKGIIDQLSKSPE--LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAA 229
+ L++ E ++I+ I+ K E+ + ++ EL +VDFS +A
Sbjct: 97 NNSLTSEKTFLNEKEENVVRISTGIFVEKTYEVERRFNESIANDSEGELKQVDFSNRTSA 156
Query: 230 AKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLD 289
++NDWV +N ++ D + T +L+N +F+ W PF+P T+ FY+
Sbjct: 157 TVDINDWVDQQSNGLLEKFF-TDDIPDDTAXILVNVFYFRDFWQSPFEPHYTRKEDFYIS 215
Query: 290 DTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
+ V ++ Y + ++GF+++ P +F+I
Sbjct: 216 PDRQITVDXX-TQEGVXKYGKFEDEGFEIVSKPLNNTRFTFVI 257
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGL--RIKHSETLLKDYKGIIDQLSKDYKGI 178
N ++SP S+ L S GA T + + L + S + YK ++D ++ K
Sbjct: 57 NVLLSPLSVATALSALSLGADERTESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKN- 115
Query: 179 IDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVS 238
LK A++I F K + + ++ ++ + +V P +E+N+WV
Sbjct: 116 ---------LKSASRIVFEKKLRIKSSFVAPLEKSYGTR-PRVLTGNPRLDLQEINNWVQ 165
Query: 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL 298
K+ K + ++L+ HFKG+W F T FYLD+ +V+VP+
Sbjct: 166 AQMKGKLARSTK--EIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPM 223
Query: 299 MFVKDSFYMYEEAGEDGFKMLELPYGVSISFI 330
M + Y + K+ +LP S+S I
Sbjct: 224 MSDPKAVLRYGLDSDLSCKIAQLPLTGSMSII 255
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 15/211 (7%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N ++SP S+ + L + GA T ++ + L + L LS Y+ +
Sbjct: 44 NLVLSPLSVALALSHLALGAQNQTLHSLHRVLHMNTGSCL-------PHLLSHFYQNL-- 94
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240
+++A +IY K + + Q+ F ++ K+ Q A +N WV
Sbjct: 95 ---GPGTIRLAARIYLQKGFPIKDDFLEQSERLFGAKPVKLTGKQEEDLAN-INQWVKEA 150
Query: 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMF 300
T KI+D + L ST L+L+NAIHF G W F P T+ F+LD+ +V V +M
Sbjct: 151 TEGKIEDFLS--ELPDSTVLLLLNAIHFHGFWRTKFDPSLTQKDFFHLDERFTVSVDMMH 208
Query: 301 VKDSFYMYEEAGEDGFKMLELPYGVSISFII 331
+ + ++ P+ ++SF++
Sbjct: 209 AVSYPLRWFLLEQPEIQVAHFPFKNNMSFVV 239
>pdb|4AU2|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU2|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU4|A Chain A, Crystal Structure Of Hsp47
pdb|4AU4|B Chain B, Crystal Structure Of Hsp47
pdb|4AU4|C Chain C, Crystal Structure Of Hsp47
pdb|4AU4|D Chain D, Crystal Structure Of Hsp47
pdb|4AU4|E Chain E, Crystal Structure Of Hsp47
pdb|4AU4|F Chain F, Crystal Structure Of Hsp47
pdb|4AU4|G Chain G, Crystal Structure Of Hsp47
pdb|3ZHA|A Chain A, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|B Chain B, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|C Chain C, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|D Chain D, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|K Chain K, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|L Chain L, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|P Chain P, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition.
pdb|3ZHA|Q Chain Q, Molecular Basis For The Action Of The Collagen-Specific
Chaperone Hsp47 Serpinh1 And Its Structure-Specific
Client Recognition
Length = 392
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 105/215 (48%), Gaps = 14/215 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGST---AEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
EN ++SP + LGL S G +T A+A++ +++ E + G+ + L +
Sbjct: 31 ENILLSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLRDEEV----HAGLGELL----R 82
Query: 177 GIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
+ + +++ K+ +++Y + + + ++N E K++F +A + +N+W
Sbjct: 83 SLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRSALQSINEW 142
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQV 296
+ T+ K+ ++ K ++ + +L+NA+ FK W F + + F + + +V V
Sbjct: 143 AAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDEKFHHKMVDNRGFMVTRSYTVGV 200
Query: 297 PLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFII 331
+M + Y Y + ++ +++E+P +S +I
Sbjct: 201 TMMH-RTGLYNYYDDEKEKLQIVEMPLAHKLSSLI 234
>pdb|2OAY|A Chain A, Crystal Structure Of Latent Human C1-Inhibitor
Length = 390
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLL---KDYKGIIDQLSK-DYK 176
N SPFS+ +L GA +T + E++L KD+ + L K
Sbjct: 56 NMAFSPFSIASLLTQVLLGAGENTKTNL---------ESILSYPKDFTCVHQALKGFTTK 106
Query: 177 GI--IDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMN 234
G+ + Q+ SP+L I +D +N A S +V + A + +N
Sbjct: 107 GVTSVSQIFHSPDLAI-------RDTFVN------ASRTLYSSSPRVLSNNSDANLELIN 153
Query: 235 DWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSV 294
WV+ +TN+KI L+ DSL + T+LVL+NAI+ KW F P+ T+ PF+ ++ +
Sbjct: 154 TWVAKNTNNKISRLL--DSLPSDTRLVLLNAIYLSAKWKTTFDPKKTRMEPFHFKNS-VI 210
Query: 295 QVPLM 299
+VP+M
Sbjct: 211 KVPMM 215
>pdb|4AU3|A Chain A, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|C Chain C, Crystal Structure Of A Hsp47-Collagen Complex
pdb|4AU3|D Chain D, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 101/215 (46%), Gaps = 14/215 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGST---AEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
EN ++SP + LGL S G +T A+A++ +++ E + G+ + L +
Sbjct: 31 ENILLSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLRDEEV----HAGLGELL----R 82
Query: 177 GIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
+ + +++ K+ +++Y + + + ++N E K++F +A + +N+W
Sbjct: 83 SLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRSALQSINEW 142
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQV 296
+ T+ K+ ++ K ++ + +L+NA FK W F + + F + + +V V
Sbjct: 143 AAQTTDGKLPEVTK--DVERTDGALLVNAXFFKPHWDEKFHHKXVDNRGFXVTRSYTVGV 200
Query: 297 PLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFII 331
+ Y Y + ++ +++E P +S +I
Sbjct: 201 TXXH-RTGLYNYYDDEKEKLQIVEXPLAHKLSSLI 234
>pdb|4AU3|B Chain B, Crystal Structure Of A Hsp47-Collagen Complex
Length = 392
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 101/215 (46%), Gaps = 14/215 (6%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGST---AEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
EN ++SP + LGL S G +T A+A++ +++ E + G+ + L +
Sbjct: 31 ENILLSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLRDEEV----HAGLGELL----R 82
Query: 177 GIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 236
+ + +++ K+ +++Y + + + ++N E K++F +A + +N+W
Sbjct: 83 SLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRSALQSINEW 142
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQV 296
+ T+ K+ ++ K ++ + +L+NA FK W F + + F + + +V V
Sbjct: 143 AAQTTDGKLPEVTK--DVERTDGALLVNAXFFKPHWDEKFHHKXVDNRGFXVTRSYTVGV 200
Query: 297 PLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFII 331
+ Y Y + ++ +++E P +S +I
Sbjct: 201 TXXH-RTGLYNYYDDEKEKLQIVEXPLAHKLSSLI 234
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 188 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 247
K NK+Y ++ + DNF + VDF+ +N V T KI
Sbjct: 4 FKSMNKVYGRYSAVFKDSFLRKIGDNFQT----VDFTDS-RTVDAINKSVDIFTEGKINP 58
Query: 248 LIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM 307
L+ + L T L+ I+A++FK KW +PF+ E T D PFY+ T V V +M + +
Sbjct: 59 LLD-EPLSPDTSLLAISAVYFKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSMYGEAFN 117
Query: 308 YEEAGED--GFKMLELPYGVSISFII 331
+ E F ++ELPY S ++
Sbjct: 118 HASVKESFGNFSIIELPYVGDTSMVV 143
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 24/213 (11%)
Query: 102 FSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLL 161
FSI+L + + + KEN++ISP S + L + + GA T M K L
Sbjct: 16 FSIEL-----FKNSIDDKENSLISPLSAMLALAMTANGADNETLAQMEKALG-------- 62
Query: 162 KDYKGIIDQLSKDYKGIIDQL--SKSPELKIANKIYFAKDIELNPA--YQTQAVDNFNSE 217
KD I+ L+K + +L + +L IAN I+F K+ + P+ + D + ++
Sbjct: 63 KDIS--IEDLNKYLYTYMKKLPNEEKSKLTIANSIWF-KENDFMPSKDFLQIIADYYKAD 119
Query: 218 LGKVDFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFK 277
+ K F + ++N+WV + TN I ++ + +D + LINA+ F +W ++
Sbjct: 120 IFKAAFDS--STVSDINNWVKSKTNGMIDKIL--NKIDPEDVMYLINAVAFDAEWETVYE 175
Query: 278 PEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 310
+ + F N +V M +++ Y+ EE
Sbjct: 176 KASVHEDIFTDVYGNRQKVEFMNSEENLYIEEE 208
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 24/213 (11%)
Query: 102 FSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLL 161
FSI+L + + + KEN++ISP S + L + + GA T M K L
Sbjct: 31 FSIEL-----FKNSIDDKENSLISPLSAMLALAMTANGADNETLAQMEKALG-------- 77
Query: 162 KDYKGIIDQLSKDYKGIIDQL--SKSPELKIANKIYFAKDIELNPA--YQTQAVDNFNSE 217
KD I+ L+K + +L + +L IAN I+F K+ + P+ + D + ++
Sbjct: 78 KDIS--IEDLNKYLYTYMKKLPNEEKSKLTIANSIWF-KENDFMPSKDFLQIIADYYKAD 134
Query: 218 LGKVDFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFK 277
+ K F + ++N+WV + TN I ++ + +D + LINA+ F +W ++
Sbjct: 135 IFKAAFDS--STVSDINNWVKSKTNGMIDKIL--NKIDPEDVMYLINAVAFDAEWETVYE 190
Query: 278 PEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 310
+ + F N +V M +++ Y+ EE
Sbjct: 191 KASVHEDIFTDVYGNRQKVEFMNSEENLYIEEE 223
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 24/213 (11%)
Query: 102 FSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLL 161
FSI+L + + + KEN++ISP S + L + + GA T M K L
Sbjct: 24 FSIEL-----FKNSIDDKENSLISPLSAMLALAMTANGADNETLAQMEKALG-------- 70
Query: 162 KDYKGIIDQLSKDYKGIIDQL--SKSPELKIANKIYFAKDIELNPA--YQTQAVDNFNSE 217
KD I+ L+K + +L + +L IAN I+F K+ + P+ + D + ++
Sbjct: 71 KDIS--IEDLNKYLYTYMKKLPNEEKSKLTIANSIWF-KENDFMPSKDFLQIIADYYKAD 127
Query: 218 LGKVDFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFK 277
+ K F + ++N+WV + TN I ++ + +D + LINA+ F +W ++
Sbjct: 128 IFKAAFDS--STVSDINNWVKSKTNGMIDKIL--NKIDPEDVMYLINAVAFDAEWETVYE 183
Query: 278 PEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEE 310
+ + F N +V M +++ Y+ EE
Sbjct: 184 KASVHEDIFTDVYGNRQKVEFMNSEENLYIEEE 216
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 20/200 (10%)
Query: 123 IISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIIDQL 182
I SP+S+ LG+ + GA +T + L + L + + D
Sbjct: 31 IWSPYSVACALGVLAAGARATTRTELTTLLGTDPAPLLAALDRAVTD------------- 77
Query: 183 SKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHT 241
SP+L ++ + D+ + +++ D +S++ DF P + +N +++ T
Sbjct: 78 --SPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADAT 135
Query: 242 NDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFV 301
I++L+ ++ + +L NA+ K +WT PF+ T++G F +VP M
Sbjct: 136 RGMIRELLPQGAVTPDLRAILTNALWAKARWTTPFEAHLTREGTFR-TPRGPKRVPFMHR 194
Query: 302 KDSFYMYEEAGEDGFKMLEL 321
+ A G++M+ L
Sbjct: 195 TKTM---PYATARGWRMVTL 211
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 85/200 (42%), Gaps = 20/200 (10%)
Query: 123 IISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIIDQL 182
I SP+S+ LG+ + GA +T + L + L + + D
Sbjct: 35 IWSPYSVAXALGVLAAGARATTRTELTTLLGTDPAPLLAALDRAVTD------------- 81
Query: 183 SKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHT 241
SP+L ++ + D+ + +++ D +S++ DF P + +N +++ T
Sbjct: 82 --SPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADAT 139
Query: 242 NDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFV 301
I++L+ ++ + +L NA+ K +WT PF+ T+ G F +VP M
Sbjct: 140 RGMIRELLPQGAVTPDLRAILTNALWAKARWTTPFEAHLTRAGTFR-TPRGPKRVPFMHR 198
Query: 302 KDSFYMYEEAGEDGFKMLEL 321
+ A G++M+ L
Sbjct: 199 TKTM---PYATARGWRMVTL 215
>pdb|1M93|A Chain A, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 55
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 118 KKENAIISPFSLHVVLGLASFGAAGSTAEAMMK 150
K EN ISP S+ VL + +GA GSTAE + K
Sbjct: 12 KGENVFISPPSISSVLTILYYGANGSTAEQLSK 44
>pdb|1SZ9|A Chain A, The Rna Polymerase Ii Ctd In Mrna Processing: Beta-Turn
Recognition And Beta-Spiral Model
pdb|1SZ9|B Chain B, The Rna Polymerase Ii Ctd In Mrna Processing: Beta-Turn
Recognition And Beta-Spiral Model
pdb|1SZ9|C Chain C, The Rna Polymerase Ii Ctd In Mrna Processing: Beta-Turn
Recognition And Beta-Spiral Model
pdb|1SZA|A Chain A, The Rna Polymerase Ii Ctd In Mrna Processing: Beta-Turn
Recognition And Beta-Spiral Model
pdb|1SZA|B Chain B, The Rna Polymerase Ii Ctd In Mrna Processing: Beta-Turn
Recognition And Beta-Spiral Model
pdb|1SZA|C Chain C, The Rna Polymerase Ii Ctd In Mrna Processing: Beta-Turn
Recognition And Beta-Spiral Model
Length = 144
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 157 SETLLKDYKGIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIE 201
+E ++KD+ I+++L+ + + II L+K E I+ YF IE
Sbjct: 5 TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIE 49
>pdb|2BF0|X Chain X, Crystal Structure Of The Rpr Of Pcf11
Length = 143
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 157 SETLLKDYKGIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIE 201
+E ++KD+ I+++L+ + + II L+K E I+ YF IE
Sbjct: 10 TEVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIE 54
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 45/202 (22%)
Query: 163 DYKGIIDQLSKDY---------------KGIIDQLSKSPELKIANKIYFAKDIE-LNPAY 206
D++GII++++ Y + I ++ S A Y+A+D + NPAY
Sbjct: 53 DWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAY 112
Query: 207 QTQAVDNFNSELGKVDFSQPPAAAKEMN-----DWVSNHTNDKIKD---------LIKAD 252
T A DF AAA N D+ NHT+ D L
Sbjct: 113 GTIA-----------DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNG 161
Query: 253 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL-MFVKDSFYMYEEA 311
+L N H G G + L D N + +++KD+ M+ +
Sbjct: 162 TLLGGYTNDTQNLFHHNGGTDFSTTENGIYKGLYDLADLNHNNSTVDVYLKDAIKMWLDL 221
Query: 312 GEDGFKM---LELPYGVSISFI 330
G DG +M +P+G SF+
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFM 243
>pdb|3UFC|X Chain X, Characterization Of A Cas6-Related Gene From Pyrococcus
Furiosus
Length = 243
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFN 215
KGI++ + KSPE KI + + DI+ A +++ + N N
Sbjct: 90 KGIVEGIEKSPEFKIGDVGFLVADIK---ALKSKEIKNVN 126
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 131 VVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIIDQLSKSPELKI 190
V LG A++GAA +A M+K L I + GI+D DY G+I ++ S +K+
Sbjct: 21 VGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVD----DYLGLI-EIQASDMIKV 75
Query: 191 ANK 193
NK
Sbjct: 76 FNK 78
>pdb|3B9N|A Chain A, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9N|B Chain B, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9O|A Chain A, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
pdb|3B9O|B Chain B, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
Length = 440
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLE-LPYGVSISFIIKSQVVPEM 339
SV P + Y+ EEAG DGF +++ + G + FI VVPE+
Sbjct: 352 SVGTPKKVADEMQYLVEEAGIDGFNLVQYVSPGTFVDFI--ELVVPEL 397
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 131 VVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIIDQLSKSPELKI 190
V LG A++GAA +A M+K L I + GI+D DY G+I ++ S +K+
Sbjct: 21 VGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVD----DYLGLI-EIQASDMIKV 75
Query: 191 ANK 193
NK
Sbjct: 76 FNK 78
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 45/202 (22%)
Query: 163 DYKGIIDQLSKDY---------------KGIIDQLSKSPELKIANKIYFAKDIE-LNPAY 206
D++GII++++ Y + I ++ S A Y+A+D + NPAY
Sbjct: 53 DWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAY 112
Query: 207 QTQAVDNFNSELGKVDFSQPPAAAKEMN-----DWVSNHTNDKIKD---------LIKAD 252
T A DF AAA N D+ NHT+ D L
Sbjct: 113 GTIA-----------DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNG 161
Query: 253 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL-MFVKDSFYMYEEA 311
+L N H G F L D N + +++KD+ M+ +
Sbjct: 162 TLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLFDLADLNHNNSTVDVYLKDAIKMWLDL 221
Query: 312 GEDGFKM---LELPYGVSISFI 330
G DG +M +P+G SF+
Sbjct: 222 GIDGIRMDAVKHMPFGWQKSFM 243
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 74/202 (36%), Gaps = 45/202 (22%)
Query: 163 DYKGIIDQLSKDY---------------KGIIDQLSKSPELKIANKIYFAKDIE-LNPAY 206
D++GII++++ Y + I ++ S A Y+A+D + NPAY
Sbjct: 53 DWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAY 112
Query: 207 QTQAVDNFNSELGKVDFSQPPAAAKEMN-----DWVSNHTNDKIKD---------LIKAD 252
T A DF AAA N D+ NHT+ D L
Sbjct: 113 GTIA-----------DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNG 161
Query: 253 SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL-MFVKDSFYMYEEA 311
+L N H G + L D N + +++KD+ M+ +
Sbjct: 162 TLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDL 221
Query: 312 GEDGFKML---ELPYGVSISFI 330
G DG +M +P+G SF+
Sbjct: 222 GIDGIRMAAVKHMPFGWQKSFM 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,016,682
Number of Sequences: 62578
Number of extensions: 415232
Number of successful extensions: 1265
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 137
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)