Query psy2651
Match_columns 342
No_of_seqs 224 out of 1402
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:43:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02057 maspin_like Maspin (ma 100.0 1.5E-48 3.2E-53 383.2 18.5 220 88-339 7-232 (372)
2 cd02048 neuroserpin Neuroserpi 100.0 7.6E-49 1.7E-53 387.2 16.2 226 84-340 3-239 (388)
3 cd00172 SERPIN SERine Proteina 100.0 1.9E-48 4.1E-53 380.5 18.2 223 88-340 4-231 (364)
4 COG4826 Serine protease inhibi 100.0 4.9E-49 1.1E-53 365.2 13.0 228 80-341 37-271 (410)
5 cd02044 ov-serpin ovalbumin fa 100.0 1.9E-48 4.1E-53 381.9 16.9 221 88-340 7-233 (370)
6 cd02054 angiotensinogen Angiot 100.0 6.5E-48 1.4E-52 378.7 17.2 227 88-340 8-241 (372)
7 cd02046 hsp47 Heat shock prote 100.0 3.1E-48 6.7E-53 380.3 14.3 221 88-340 9-235 (366)
8 cd02059 ovalbumin_like The ova 100.0 1E-47 2.3E-52 379.2 18.1 234 84-340 4-250 (389)
9 cd02058 PAI-2 Plasminogen Acti 100.0 5.1E-48 1.1E-52 380.1 15.4 227 85-340 5-237 (380)
10 cd02056 alpha-1-antitrypsin_li 100.0 8.8E-48 1.9E-52 375.9 16.7 224 88-341 4-231 (361)
11 cd02045 antithrombin-III_like 100.0 9.7E-48 2.1E-52 378.6 17.1 230 83-340 7-244 (381)
12 cd02051 PAI-1_nexin-1 Plasmino 100.0 1.3E-47 2.8E-52 377.1 16.8 224 83-340 9-241 (377)
13 KOG2392|consensus 100.0 2.1E-47 4.6E-52 375.7 15.7 225 87-341 12-243 (380)
14 cd02052 PEDF Pigment epitheliu 100.0 5.9E-47 1.3E-51 372.2 16.8 218 88-340 21-242 (374)
15 cd02049 bacterial_SERPIN SERin 100.0 5.4E-47 1.2E-51 370.9 16.4 220 85-340 5-229 (364)
16 cd02055 PZI Protein Z-dependen 100.0 5.6E-47 1.2E-51 371.3 14.1 230 81-340 2-233 (365)
17 smart00093 SERPIN SERine Prot 100.0 2.3E-46 4.9E-51 365.5 17.1 215 113-340 6-226 (359)
18 PF00079 Serpin: Serpin (serin 100.0 1E-46 2.3E-51 368.0 14.3 224 85-340 3-232 (371)
19 cd02047 HCII Heparin cofactor 100.0 7.9E-46 1.7E-50 370.5 18.2 226 88-340 71-302 (436)
20 cd02043 plant_SERPIN SERine Pr 100.0 7.2E-46 1.6E-50 365.2 16.4 219 88-340 5-239 (381)
21 PHA02948 serine protease inhib 100.0 2.2E-45 4.8E-50 360.8 17.6 211 88-339 23-242 (373)
22 cd02053 alpha2AP Alpha2-antipl 100.0 2.9E-45 6.4E-50 357.2 16.1 217 85-340 5-225 (351)
23 cd02050 C1_inh C1 inhibitor (C 100.0 2.4E-44 5.1E-49 351.0 17.1 215 88-340 4-220 (352)
24 PHA02660 serpin-like protein; 100.0 7.8E-42 1.7E-46 334.7 14.4 197 88-340 17-216 (364)
25 PRK15411 rcsA colanic acid cap 56.5 12 0.00026 33.7 3.4 42 133-186 143-184 (207)
26 COG1510 Predicted transcriptio 34.5 55 0.0012 29.1 3.8 33 126-158 25-57 (177)
27 PRK10046 dpiA two-component re 27.8 73 0.0016 28.4 3.7 35 124-158 159-193 (225)
28 PRK13870 transcriptional regul 26.1 67 0.0015 29.6 3.2 43 132-186 178-220 (234)
29 PF07037 DUF1323: Putative tra 20.9 71 0.0015 26.6 2.0 34 229-265 13-46 (122)
No 1
>cd02057 maspin_like Maspin (mammary serine proteinase inhibitor), a member of the serpin superfamily, with a multitude of effects on cells and tissues at an assortment of developmental stages. Maspin has tumor suppressing activity against breast and prostate cancer. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=100.00 E-value=1.5e-48 Score=383.20 Aligned_cols=220 Identities=26% Similarity=0.482 Sum_probs=204.1
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++... +
T Consensus 7 ~F~~~l~~-----------------~~~~~~~~~Nvv~SP~si~~aL~ml~~Ga~g~T~~el~~~L~~~~~~--~----- 62 (372)
T cd02057 7 AFAVDLFK-----------------KLCEKEPTGNVVFSPICLSTSLALAQVGAKGDTANEIGKVLHFENVK--D----- 62 (372)
T ss_pred HHHHHHHH-----------------HHhccCCCCcEEECHHHHHHHHHHHHhhcCCcHHHHHHHHhCCCChh--H-----
Confidence 89999999 88765 78999999999999999999999999999999999997433 3
Q ss_pred hhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCc-HHHHHhhchhhhcccC
Q psy2651 167 IIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP-PAAAKEMNDWVSNHTN 242 (342)
Q Consensus 167 ~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~-~~a~~~IN~WV~~~T~ 242 (342)
++..++.+...+.+.. .++++|++|++++++++++|.+.++++|+++++.+||.+. ..+++.||+||+++|+
T Consensus 63 ----~~~~~~~~~~~~~~~~~~~~l~~an~l~v~~~~~~~~~f~~~~~~~y~~~~~~vdF~~~~~~a~~~IN~wv~~~T~ 138 (372)
T cd02057 63 ----VPFGFQTVTSDVSKLSSFYSLKLIKRLYVDKSLNLSTDFINSTKRPYPKELETVDFKDKLEETRGQINNSIKELTD 138 (372)
T ss_pred ----HHHHHHHHHHHHhcCCccchhHhhhhhhhhCCCCccHHHHHHHHHHhcCeeEEecCCCCHHHHHHHHHHHHHHhcc
Confidence 6777888877765432 7999999999999999999999999999999999999765 5688999999999999
Q ss_pred CccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEe
Q psy2651 243 DKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELP 322 (342)
Q Consensus 243 g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELP 322 (342)
|+|++++++++++++|+++|+||+||||.|+++|++..|++++||.++|+.++||||++.+. |+|+++++++++|||||
T Consensus 139 g~I~~l~~~~~i~~~t~l~lvNa~yFkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~~~~~~~~~~~vv~LP 217 (372)
T cd02057 139 GHFENILNENSVNDQTKILVVNAAYFVGNWMKKFPESETKECPFRVNKTETKPVQMMNLEAT-FSMGYIDELNTKILELP 217 (372)
T ss_pred ChhhhcCCCCCCCCCCceeeeehheeccccCCCCCccccccCCCEECCCceEeeEhhheece-EEeEEeCCcCceEEEee
Confidence 99999999889999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred C-CCcEEEEEeecCCCCC
Q psy2651 323 Y-GVSISFIIKSQVVPEM 339 (342)
Q Consensus 323 Y-~~~~SMlI~~~ILP~~ 339 (342)
| ++++||+| |||++
T Consensus 218 y~~~~~sm~i---iLP~~ 232 (372)
T cd02057 218 FQNKHLSMLI---LLPKD 232 (372)
T ss_pred cCCCCEEEEE---EecCc
Confidence 9 99999999 89985
No 2
>cd02048 neuroserpin Neuroserpin is a inhibitory member of the SERine Proteinase INhibitor (serpin) family that reacts preferentially with tissue-type plasminogen activator (tPA). It is located in neurons in regions of the brain where tPA is also found, suggesting that neuroserpin is the selective inhibitor of tPA in the central nervous system (CNS). This subgroup corresponds to clade I of the serpin superfamily.
Probab=100.00 E-value=7.6e-49 Score=387.21 Aligned_cols=226 Identities=32% Similarity=0.562 Sum_probs=208.0
Q ss_pred cccccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchh
Q psy2651 84 ILDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLK 162 (342)
Q Consensus 84 ~~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~ 162 (342)
+++ +||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++.....+
T Consensus 3 ~~~-~Fa~~l~~-----------------~~~~~~~~~N~v~SP~si~~aL~~l~~Ga~g~T~~el~~~L~~~~~~~~~- 63 (388)
T cd02048 3 AIA-ELSVDLYN-----------------ALRASKEDENIIFSPLSTALALGMVELGAKGSALKEIRHSLGYDGLKNGE- 63 (388)
T ss_pred hhh-HHHHHHHH-----------------HhhccCCCCcEEEChHHHHHHHHHHhhhcCCcHHHHHHHHhCCCCCChHH-
Confidence 445 89999999 88776 78999999999999999999999999999999999998654323
Q ss_pred cccchhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhc
Q psy2651 163 DYKGIIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239 (342)
Q Consensus 163 ~~~~~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~ 239 (342)
....++++...+...+ .++++|++|++++++++++|.+.++++|+++++.+||.++..+++.||+||++
T Consensus 64 --------~~~~~~~~~~~~~~~~~~~~l~~an~i~v~~~~~l~~~f~~~~~~~f~~~~~~vdF~~~~~~~~~IN~wv~~ 135 (388)
T cd02048 64 --------EFSFLKDLSSMITAKEKEYVFNLANSLYLQNGFHVKEKFLQSNKKYFNAAVKLVDFSQVKAVAEHINKWVEN 135 (388)
T ss_pred --------HHHHHHHHHHHhccCCCccchHHhhhhHhhcCCCccHHHHHHHHHHhcCeeEEECCCChHHHHHHHHHHHHH
Confidence 5566777777664432 89999999999999999999999999999999999999988889999999999
Q ss_pred ccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCC------
Q psy2651 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE------ 313 (342)
Q Consensus 240 ~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~------ 313 (342)
+|+|+|++++++.+++++|+++|+||+||||.|+++|++..|+..+||..+|++++||||++.+. |+|+++++
T Consensus 136 ~T~g~I~~l~~~~~l~~~t~lvlvNai~Fkg~W~~~F~~~~T~~~~F~~~~g~~~~V~mM~~~~~-~~y~~~~~~~~~~~ 214 (388)
T cd02048 136 HTNNKIKDMFSSRDFTPLTRLVLVNALYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGE-FYYGEFSDGSNEAG 214 (388)
T ss_pred hccCchhhcCCCccCCHHHHHHhhheEEEeeeccCCCCHHHCeeccEEECCCceEEeehhcccCc-EEEEeccccccccc
Confidence 99999999999889999999999999999999999999999999999999999999999999998 99999887
Q ss_pred CCeEEEEEeC-CCcEEEEEeecCCCCCC
Q psy2651 314 DGFKMLELPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 314 l~~~vLELPY-~~~~SMlI~~~ILP~~g 340 (342)
++++|||||| ++++||+| |||+++
T Consensus 215 ~~~~vv~LPy~~~~~sm~i---iLP~~~ 239 (388)
T cd02048 215 GIYQVLELPYEGDEISLMI---ILSRQE 239 (388)
T ss_pred cCcEEEEEecCCCceEEEE---EccCCC
Confidence 8899999999 99999999 899975
No 3
>cd00172 SERPIN SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=100.00 E-value=1.9e-48 Score=380.48 Aligned_cols=223 Identities=39% Similarity=0.703 Sum_probs=209.3
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++..+..+
T Consensus 4 ~Fa~~l~~-----------------~~~~~~~~~N~v~SP~si~~aL~~l~~Ga~g~T~~el~~~L~~~~~~~~~----- 61 (364)
T cd00172 4 DFALDLYK-----------------QLAKSEPDENVVFSPLSIASALALLYLGAGGETREQLRKVLGLPSLDDED----- 61 (364)
T ss_pred hHHHHHHH-----------------HHhhcCCCCCEEEcHHHHHHHHHHHhhhcCchHHHHHHHHhCCCCCCHHH-----
Confidence 89999999 88776 78999999999999999999999999999999999998522123
Q ss_pred hhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhcccCC
Q psy2651 167 IIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 243 (342)
Q Consensus 167 ~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~T~g 243 (342)
++..++.+++.+.+.. .+.++|++|++++++++++|.+.++++|+++++.+||.+++.+++.||+||+++|+|
T Consensus 62 ----~~~~~~~~~~~l~~~~~~~~l~~an~~~~~~~~~~~~~f~~~~~~~~~~~~~~~dF~~~~~a~~~IN~wv~~~T~g 137 (364)
T cd00172 62 ----VHQAFKSLLSSLKDSEKGVELKLANRLFVQKGLTVKEDFLDLAKKYYDAEVESVDFANPEAAAAQINNWVEEKTNG 137 (364)
T ss_pred ----HHHHHHHHHHHHhCCCCCceeeeehhhhhhCCCchhHHHHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHhhhcc
Confidence 8889999998886652 899999999999999999999999999999999999999877999999999999999
Q ss_pred ccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEeC
Q psy2651 244 KIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 323 (342)
Q Consensus 244 ~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELPY 323 (342)
+|++++++++++++|+++|+||+||+|.|+++|++..|..++|+..+|+.++||||++.+. |+|+++++++++||||||
T Consensus 138 ~I~~~~~~~~i~~~t~l~lvnai~Fkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~y~~~~~l~~~vv~lpy 216 (364)
T cd00172 138 KIKDLLSPDALDPDTRLVLVNAIYFKGKWKTPFDPELTRKRPFYVSEGESVQVPMMYQTGK-FRYAEDEELDAQVLELPY 216 (364)
T ss_pred cchhhCCCCCCCcccceeeeeheeeeeccCCCCChhhceecccEeCCCcEEEEeCccccCc-EEEEEcCccCcEEEEeec
Confidence 9999999888999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred -CCcEEEEEeecCCCCCC
Q psy2651 324 -GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 324 -~~~~SMlI~~~ILP~~g 340 (342)
++++||+| |||+++
T Consensus 217 ~~~~~sm~i---ilP~~~ 231 (364)
T cd00172 217 KGSDLSMLI---ILPKEV 231 (364)
T ss_pred CCCceEEEE---EecCCC
Confidence 88999999 899986
No 4
>COG4826 Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-49 Score=365.16 Aligned_cols=228 Identities=31% Similarity=0.515 Sum_probs=209.8
Q ss_pred cccccccccccccccccccCCcchhhhhhhhhhhhhcc--CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCc
Q psy2651 80 SFSSILDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN--KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHS 157 (342)
Q Consensus 80 ~~~~~~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~--~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~ 157 (342)
....+.| .|+++||. ++++. +.+|++|||+||+.++||.|.||.|.|++||..+++++.+
T Consensus 37 ~ia~ANN-aF~FdlyS-----------------~~~~~~~~~~Ni~fSPySV~~AmAmcY~GaeGsTkeqmsnvfyfp~n 98 (410)
T COG4826 37 DIAAANN-AFAFDLYS-----------------ELAKQEGEAENILFSPYSVSAAMAMCYEGAEGSTKEQMSNVFYFPIN 98 (410)
T ss_pred chhhccc-chhHHHHH-----------------HHHhhcccccceeeccHHHHHHHHHHhcccCcchHHHHHhheecccc
Confidence 3445667 99999999 88866 6889999999999999999999999999999999999966
Q ss_pred ccchhcccchhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCc-HHHHHhh
Q psy2651 158 ETLLKDYKGIIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP-PAAAKEM 233 (342)
Q Consensus 158 ~~~~~~~~~~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~-~~a~~~I 233 (342)
. .. +...++.+...+..++ .|..||++||++++++++.|+..++.+|.+++.++||.+. ..++..|
T Consensus 99 ~-~v---------l~~~~~~~nd~i~sp~~~y~le~AnalWvqedyplke~yv~n~r~yy~aevtnlDF~~~p~~s~dtI 168 (410)
T COG4826 99 K-TV---------LKVREKSLNDKINSPNDSYELETANALWVQEDYPLKENYVNNVRNYYDAEVTNLDFVNKPDASRDTI 168 (410)
T ss_pred c-hH---------hhhhHHhhcccccCCccchhhhhhhhHHHhcCCCCCHHHHHHHHhhhhcceeecccccCchHHHHHH
Confidence 5 44 6777777777776655 9999999999999999999999999999999999999764 6688899
Q ss_pred chhhhcccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCC
Q psy2651 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE 313 (342)
Q Consensus 234 N~WV~~~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~ 313 (342)
|+||+++|+|+|+++++++.|.++++++|+|||||+|+|...||+..|.++.|+...|..+.|+||++.+. |+|++ .
T Consensus 169 NkWvEekT~gkIkdlVp~~~i~~d~rlvltnAiYFnGkW~~efDk~~t~krtFy~a~~~d~sv~mMs~~g~-fny~e--t 245 (410)
T COG4826 169 NKWVEEKTNGKIKDLVPEDYIGPDTRLVLTNAIYFNGKWWPEFDKQMTGKRTFYPAKGEDKSVDMMSICGD-FNYGE--T 245 (410)
T ss_pred HHHHHHhhcchHhhcCCccccCCceeEEEEeeEEEcCeeccccchhhccceeeecCChhhhcchhHHhcCC-CCccc--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99996 6
Q ss_pred CCeEEEEEeC-CCcEEEEEeecCCCCCCC
Q psy2651 314 DGFKMLELPY-GVSISFIIKSQVVPEMGR 341 (342)
Q Consensus 314 l~~~vLELPY-~~~~SMlI~~~ILP~~g~ 341 (342)
.++++||||| |.++||+| +||++-+
T Consensus 246 ~kakiveLPy~gd~lSmYI---vLPk~nN 271 (410)
T COG4826 246 SKAKIVELPYKGDDLSMYI---VLPKDNN 271 (410)
T ss_pred cCceEEEcccCCCceEEEE---EeeCCCC
Confidence 7899999999 99999999 8999764
No 5
>cd02044 ov-serpin ovalbumin family of serpins (ov-serpins). Family of closely related proteins, whose members can be secreted (ovalbumin), cytosolic (leukocyte elastase inhibitor, LEI), or targeted to both compartments (plasminogen activator inhibitor 2, PAI-2). This subgroup corresponds to clade B of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants can cause blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=100.00 E-value=1.9e-48 Score=381.89 Aligned_cols=221 Identities=28% Similarity=0.543 Sum_probs=207.1
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++... +
T Consensus 7 ~F~~~l~~-----------------~~~~~~~~~N~v~SP~si~~aL~~l~~Ga~g~T~~el~~~L~~~~~~--~----- 62 (370)
T cd02044 7 AFAVDVFK-----------------ELSKKSALQNVFFSPIAIMSSLAMVYLGAKGSTANQIGKVLHFDNVK--D----- 62 (370)
T ss_pred HHHHHHHH-----------------HHhhcCCCCcEEECHHHHHHHHHHHhhhcCCcHHHHHHHHhCCCCHH--H-----
Confidence 89999999 88776 78999999999999999999999999999999999996432 3
Q ss_pred hhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCc-HHHHHhhchhhhcccC
Q psy2651 167 IIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP-PAAAKEMNDWVSNHTN 242 (342)
Q Consensus 167 ~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~-~~a~~~IN~WV~~~T~ 242 (342)
++..++.++..+.+.+ .++++|++|+++++++.++|.+.++++|+++++.+||.++ ..+++.||+||+++|+
T Consensus 63 ----~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~vdF~~~~~~a~~~IN~wv~~~T~ 138 (370)
T cd02044 63 ----VHSSFQTLLSDINKLNSFYSLKLVNRLYGEKRYNFLPEFLSSTKKPYAKELETVDFKDKAEETRGQINSWIKDQTK 138 (370)
T ss_pred ----HHHHHHHHHHHHhcCCCCceEeeeeehhhcCCCcccHHHHHHHHHhhccceEeccccCCHHHHHHHHHHHHHHhcC
Confidence 8888999988876543 8999999999999999999999999999999999999875 5688899999999999
Q ss_pred CccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEe
Q psy2651 243 DKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELP 322 (342)
Q Consensus 243 g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELP 322 (342)
|+|++++++++++++|.++|+||+||||.|+.+|++..|+..+|+..+|.+++||||++.+. |+|++.+++++++||||
T Consensus 139 g~I~~lv~~~~l~~~t~lvlvnai~Fkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~~~~~~~~~~~vv~LP 217 (370)
T cd02044 139 GKIENLLPENSVDSQTAMVVVNAAYFKGKWMKKFSEEETKESPFRVNKTETKPVQMMYMEAT-FNMGNIESLKMKILELP 217 (370)
T ss_pred CchhhcCCCCCCCcchhheeeeeeeEcccccCCCChhhCccCcCCcCCCcEEEeeCccccCc-eeeEEcCCCCeEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred C-CCcEEEEEeecCCCCCC
Q psy2651 323 Y-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 323 Y-~~~~SMlI~~~ILP~~g 340 (342)
| ++++||+| |||+++
T Consensus 218 y~~~~~sm~i---iLP~~~ 233 (370)
T cd02044 218 FANKDLSMFI---LLPDEV 233 (370)
T ss_pred cCCCceEEEE---EcCCCC
Confidence 9 88999999 899986
No 6
>cd02054 angiotensinogen Angiotensinogen is part of the renin-angiotensin system (RAS), which plays an important role in blood pressure regulation, renal haemodynamics, fluid and electrolyte homeostasis. It is also involved in normal and abnormal growth processes. The growth promoting actions of angiotensin have been shown in a variety of cells and tissues. This subgroup represents clade A8 of the serpin superfamily. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=100.00 E-value=6.5e-48 Score=378.75 Aligned_cols=227 Identities=22% Similarity=0.375 Sum_probs=198.4
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++++. +++|+|+||+||+.+|+|++.||+|+|++||.++||++...... .+..
T Consensus 8 ~f~~~l~~-----------------~l~~~~~~~N~v~SP~Si~~aL~ml~~GA~G~T~~el~~~L~~~~~~~~~-~~~~ 69 (372)
T cd02054 8 VLGLRMYG-----------------MLSELWVHTNTLLSPTSVFGTLASLYLGASKKTADSLQALLGLPWKSKNS-DCTS 69 (372)
T ss_pred HHHHHHHH-----------------HHHhhCCCCCEEEChHHHHHHHHHHHcCCCccHHHHHHHHhCCCcccccc-cccc
Confidence 89999999 88766 78899999999999999999999999999999999997543110 0000
Q ss_pred --hhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccc-cEEecCCCcHHHHHhhchhhhcc
Q psy2651 167 --IIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSE-LGKVDFSQPPAAAKEMNDWVSNH 240 (342)
Q Consensus 167 --~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~-v~~vdF~~~~~a~~~IN~WV~~~ 240 (342)
....+...++.+...+...+ .+..+|++|++++++++++|++.++++|+++ ++.+||.+++.+++.||+||+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~i~~~~~~~l~~~f~~~~~~~y~a~~~~~vdF~~~~~a~~~IN~WV~~~ 149 (372)
T cd02054 70 RVDGHKVLSTLQAIQSLVDAQGRQLLLSTVVWTFTAPGIHLSQPFVQGLADFSDASFPRSVDFTEPDVAEEKINNFVQAT 149 (372)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCccEEEEEEEEEecCCCCccHHHHHHHHHHhCcccceeecCCChHHHHHHHHHHHHHH
Confidence 01125667777766665443 7889999999999999999999999999997 99999998887889999999999
Q ss_pred cCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEE
Q psy2651 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLE 320 (342)
Q Consensus 241 T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLE 320 (342)
|+|+|++++. +++++|+++|+||+||||.|+++|+++.|+ +|+..+|..++||||++.+. |+|+++++++++|||
T Consensus 150 T~g~I~~ll~--~~~~~t~lvLvNaiyFkg~W~~~F~~~~T~--~f~~~~~~~~~V~mM~~~~~-~~y~~~~~~~~~vle 224 (372)
T cd02054 150 SDGKVKSSLK--GLSPDSDLLFATSVHFQGNWKTASQLEEPQ--EFWVDNNTSVSVPMLSHTGT-FKYLSDIQDNFSITQ 224 (372)
T ss_pred hcCchhhhcc--CCCCCCeEEEEEEEEEEHhhcCCCCcccce--eEEeCCCCEEEEeeeeccCc-EEEEEecCCCcEEEE
Confidence 9999999996 688999999999999999999999999997 69999999999999999998 999999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCC
Q psy2651 321 LPYGVSISFIIKSQVVPEMG 340 (342)
Q Consensus 321 LPY~~~~SMlI~~~ILP~~g 340 (342)
|||++++||+| |||+++
T Consensus 225 LPy~~~~sm~i---iLP~~~ 241 (372)
T cd02054 225 LPLSKRACLLL---VQPHEG 241 (372)
T ss_pred EeeCCCeEEEE---EeCCCC
Confidence 99944699999 899975
No 7
>cd02046 hsp47 Heat shock protein 47 (Hsp47), also called colligin, because of its collagen binding ability, is a chaperone specific for procollagen. It has been shown to be essential for collagen biosynthesis, but its exact function is still unclear. Hsp47 is a non-inhibitory member of the SERPIN superfamily and corresponds to clade H.
Probab=100.00 E-value=3.1e-48 Score=380.27 Aligned_cols=221 Identities=23% Similarity=0.428 Sum_probs=204.3
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++... +++|+|+||+||+.+|+|++.||+|+|++||.++||++.....+
T Consensus 9 ~f~~~l~~-----------------~~~~~~~~~N~v~SP~si~~aLa~l~~Ga~g~T~~ql~~~L~~~~~~~~~----- 66 (366)
T cd02046 9 GLAFNLYH-----------------AMAKDKGVENILLSPVVVASSLGLVSMGGKASTASQAKAVLSADKLKDEH----- 66 (366)
T ss_pred HHHHHHHH-----------------HhhccCCCCeEEEChHHHHHHHHHHHhhcCccHHHHHHHHhCCCCCCcHH-----
Confidence 89999999 88776 78899999999999999999999999999999999986433223
Q ss_pred hhHHHHHHHHHHHHHhCCC---c-chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhcccC
Q psy2651 167 IIDQLSKDYKGIIDQLSKS---P-ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTN 242 (342)
Q Consensus 167 ~~~~v~~~~~~l~~~l~~~---~-~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~T~ 242 (342)
++..++++...+... + .+.++|++|+++++.++++|.+.++++|+++++.+||.++..+++.||+||+++|+
T Consensus 67 ----~~~~~~~l~~~l~~~~~~~~~l~~an~~~~~~~~~l~~~F~~~~~~~y~~~~~~vdF~~~~~a~~~IN~wv~~~T~ 142 (366)
T cd02046 67 ----VHTGLSELLNEVSNSTARNVTWKIGNRLYGPSSVSFADDFVKNSKKHYNYEHSKINFRDKRSALNSINEWAAQTTD 142 (366)
T ss_pred ----HHHHHHHHHHHhhcCCCCCcEEEEeeehhhcCCCChhHHHHHHHHHHhcCeeEEecCCChHHHHHHHHHHHHHhcC
Confidence 788888888776432 2 79999999999999999999999999999999999999988888999999999999
Q ss_pred CccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEe
Q psy2651 243 DKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELP 322 (342)
Q Consensus 243 g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELP 322 (342)
|+|++++. +++++|+++|+||+||||.|+.+|++..|+.++||..+|+.++||||++.+. ++|+++++++++|||||
T Consensus 143 g~I~~~~~--~i~~~t~l~lvnaiyFkg~W~~~F~~~~T~~~~F~~~~~~~v~V~mM~~~~~-~~y~~~~~~~~~vl~LP 219 (366)
T cd02046 143 GKLPEVTK--DVEKTDGALIVNAMFFKPHWDEKFHHKMVDNRGFMVTRSYTVSVPMMHRTGL-YGYYDDEENKLQIVEMP 219 (366)
T ss_pred CchhHhhc--cCCcchHhhhhheEEEcchhcCCCCHHhceeccEEeCCCeEEEhhHhhccCc-eeeEEeCCCCeEEEEEE
Confidence 99999985 7899999999999999999999999999999999999999999999999998 99999989999999999
Q ss_pred C-CCcEEEEEeecCCCCCC
Q psy2651 323 Y-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 323 Y-~~~~SMlI~~~ILP~~g 340 (342)
| ++++||+| |||+++
T Consensus 220 y~~~~~sm~i---iLP~~~ 235 (366)
T cd02046 220 LAHKLSSMIF---IMPYHV 235 (366)
T ss_pred cCCCcEEEEE---EecCCC
Confidence 9 89999999 899986
No 8
>cd02059 ovalbumin_like The ovalbumin_like group of serpins contains ovalbumin, the squamous cell carcinoma antigen 1 (SCCA1) and other closely related serpins of clade B of the serpin superfamily. Ovalbumin, the major protein component of avian egg white, is a non-inhibitory member of SERine Proteinase INhibitorS (serpins). In contrast, SCCA1 inhibits cysteine proteinases such as cathepsin S, K, L, and papain, a so called cross-class serpin.
Probab=100.00 E-value=1e-47 Score=379.19 Aligned_cols=234 Identities=34% Similarity=0.555 Sum_probs=208.7
Q ss_pred cccccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchh
Q psy2651 84 ILDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLK 162 (342)
Q Consensus 84 ~~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~ 162 (342)
+.+ +||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++.......
T Consensus 4 ~~~-~Fa~~l~~-----------------~~~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~ 65 (389)
T cd02059 4 ANT-EFCFDLFK-----------------ELKKNHKNKNIFFSPLSISSALGMVLLGARDDTAAQIEKVLHFDHASGSGS 65 (389)
T ss_pred hhh-HHHHHHHH-----------------HHhhcCCCCCEEECHHHHHHHHHHHhcccCCcHHHHHHHHhCCCccccccc
Confidence 345 99999999 88776 789999999999999999999999999999999999975321000
Q ss_pred -------cccchhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcH-HHHH
Q psy2651 163 -------DYKGIIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAK 231 (342)
Q Consensus 163 -------~~~~~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~-~a~~ 231 (342)
.|+ ....++..|+.++..+.+.+ .++++|+||++++++++++|.+.++++|+++++.+||.++. .+++
T Consensus 66 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~l~~an~l~~~~~~~l~~~f~~~~~~~~~~~~~~vdF~~~~~~~~~ 144 (389)
T cd02059 66 SKPAASAQCN-QSGGVHSQFKDLLSQINKPNDDYELSIANRLYGEKTYPFHQEYLDCVEKLYRAKLEPVDFQNAAEASRK 144 (389)
T ss_pred cccccccccc-cHHHHHHHHHHHHHHHcCCCCCcEEEEeeehhhhCCCCccHHHHHHHHHHhcCeeEEEcCCCCHHHHHH
Confidence 000 01127888999988875433 79999999999999999999999999999999999998864 5778
Q ss_pred hhchhhhcccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEe
Q psy2651 232 EMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEA 311 (342)
Q Consensus 232 ~IN~WV~~~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~ 311 (342)
.||+||+++|+|+|++++++++++++|+++|+||+||+|.|+.+|++..|+.++|+..+|++++||||++.+. |+|+++
T Consensus 145 ~IN~wv~~~T~g~I~~~~~~~~i~~~t~lvlvna~~Fkg~W~~~F~~~~T~~~~F~~~~g~~~~V~mM~~~~~-~~~~~~ 223 (389)
T cd02059 145 KINSWVESQTNGKIKNLFGKGTIDSSTVLVLVNAIYFKGKWEKKFEKENTVDAPFKLNENENKPVQMMYQIGK-FKLASI 223 (389)
T ss_pred HHHHHHHHhccchhhhcCCCCCCCcccceeeEeeeEEeeeccCCCCcccCccCccEeCCCceEEeehhcccCc-EEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CCCCeEEEEEeC-CCcEEEEEeecCCCCCC
Q psy2651 312 GEDGFKMLELPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 312 ~~l~~~vLELPY-~~~~SMlI~~~ILP~~g 340 (342)
++++++|||||| ++++||+| |||+++
T Consensus 224 ~~~~~~vl~LPy~~~~~sm~i---iLP~~~ 250 (389)
T cd02059 224 EEPKMKILELPYAGGGLSMIV---LLPDEI 250 (389)
T ss_pred CCCCcEEEEeecCCCceEEEE---EccCCC
Confidence 999999999999 88999999 899985
No 9
>cd02058 PAI-2 Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is a serine protease inhibitor that belongs to the ov-serpin branch of the serpin superfamily. It is is an effective inhibitor of urinary plasminogen activator (urokinase or uPA) and is involved in cell differentiation, tissue growth and regeneration.
Probab=100.00 E-value=5.1e-48 Score=380.12 Aligned_cols=227 Identities=32% Similarity=0.532 Sum_probs=208.6
Q ss_pred ccccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhc
Q psy2651 85 LDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKD 163 (342)
Q Consensus 85 ~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~ 163 (342)
.+ +||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++......
T Consensus 5 ~~-~F~~~l~~-----------------~~~~~~~~~N~v~SP~si~~aL~~l~~GA~g~T~~el~~~L~~~~~~~~~-- 64 (380)
T cd02058 5 NT-SFALNLFK-----------------KLAESSPTKNIFFSPWSISSALAMVYLGAKGNTAAQMAKVLQFNEVGGNS-- 64 (380)
T ss_pred hh-HHHHHHHH-----------------HHhhcCCCCcEEECHHHHHHHHHHHhcccCCcHHHHHHHHhCcCccccch--
Confidence 45 99999999 88776 78999999999999999999999999999999999997653101
Q ss_pred ccchhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCc-HHHHHhhchhhhc
Q psy2651 164 YKGIIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP-PAAAKEMNDWVSN 239 (342)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~-~~a~~~IN~WV~~ 239 (342)
+.++..|+.++..+.+++ .++++|+||++++++++++|.+.++++|+++++.+||.++ ..+++.||+||++
T Consensus 65 -----~~~~~~~~~l~~~~~~~~~~~~l~~~n~l~~~~~~~l~~~f~~~~~~~~~~~~~~vdF~~~~~~a~~~IN~wv~~ 139 (380)
T cd02058 65 -----EDIHSGFQSLLSEINKPGTNYLLKSANRLYGEKTYPFLEKFLQLTQKYYQAEPQAVDFVEAAEQARKEINSWVER 139 (380)
T ss_pred -----HHHHHHHHHHHHHHhCCCCccEeehhhhhhhcCCCcHhHHHHHHHHhhhcCceEEecCCCCHHHHHHHHHHHHHH
Confidence 128888999988876543 7999999999999999999999999999999999999764 5688999999999
Q ss_pred ccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEE
Q psy2651 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKML 319 (342)
Q Consensus 240 ~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vL 319 (342)
+|+|+|++++++++++++|+++|+||+||+|.|+.+|+++.|..++|+..+|.+++||||++.+. |+|++.+++++++|
T Consensus 140 ~T~g~I~~~~~~~~i~~~t~lvlvna~~Fkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~~~~~~~~~~~vv 218 (380)
T cd02058 140 QTEGKIQNLLPPGSVDSLTRLVLVNAIYFKGNWEEKFLKENTRERPFRLNKNTTKPVQMMFLKKK-FPITYIEELKAQVL 218 (380)
T ss_pred hcccchhhcCCcCCCChhHHhHhhheeEEccccCCCCCcccCCcccccCCCCceEEeechhhcCc-eeeEEcCCCCcEEE
Confidence 99999999999889999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred EEeC-CCcEEEEEeecCCCCCC
Q psy2651 320 ELPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 320 ELPY-~~~~SMlI~~~ILP~~g 340 (342)
|||| ++++||+| |||+++
T Consensus 219 ~LPy~~~~~sm~i---iLP~~~ 237 (380)
T cd02058 219 ELPYVGKELSMFI---LLPDEI 237 (380)
T ss_pred EccCCCCceEEEE---Eecccc
Confidence 9999 99999999 899975
No 10
>cd02056 alpha-1-antitrypsin_like alpha-1-antitrypsin_like. This family contains a variety of different members of clade A of the serpin superfamily. They include the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and noninhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=100.00 E-value=8.8e-48 Score=375.88 Aligned_cols=224 Identities=30% Similarity=0.567 Sum_probs=205.8
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++... +++|+|+||+||+.+|+|++.||+|+|++||.++||++..+...+
T Consensus 4 ~F~~~l~~-----------------~~~~~~~~~N~v~SP~si~~~L~ml~~GA~g~T~~el~~~L~~~~~~~~~~---- 62 (361)
T cd02056 4 DFAFRLYR-----------------QLASESPSKNIFFSPVSISTALAMLSLGARSSTLAQILEGLGFNLTEISEE---- 62 (361)
T ss_pred HHHHHHHH-----------------HHhhcCCCCcEEEChHHHHHHHHHHHCccchhHHHHHHHHhcCCccCCCHH----
Confidence 89999999 88776 789999999999999999999999999999999999975542211
Q ss_pred hhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhcccCC
Q psy2651 167 IIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 243 (342)
Q Consensus 167 ~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~T~g 243 (342)
.++..++++...+.+.. .+.++|+||++++++++++|.+.++++|+++++.+||.++.++++.||+||+++|+|
T Consensus 63 ---~~~~~~~~l~~~l~~~~~~~~l~~an~l~~~~~~~~~~~f~~~~~~~y~~~~~~~dF~~~~~~~~~IN~wv~~~T~g 139 (361)
T cd02056 63 ---EIHQGFQHLLHLLNQPDSGLQLNMGNALFLDKRLKPLDKFLEDVKHLYESEAFSTDFQDSAEAKKQINDYVEKKTHG 139 (361)
T ss_pred ---HHHHHHHHHHHHHcCCCCcceEEeeeehhhhCCCChhHHHHHHHHHHhcCceEeeCCCChHHHHHHHHHHHHHHhhh
Confidence 28888999998886543 799999999999999999999999999999999999998888999999999999999
Q ss_pred ccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEeC
Q psy2651 244 KIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY 323 (342)
Q Consensus 244 ~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELPY 323 (342)
+|+++++ +++++|+++|+||+||+|.|+.+|++..|+.++|+..+|+.++||||++.+. |+|++++++++++|||||
T Consensus 140 ~I~~~~~--~i~~~t~lvlvna~~Fk~~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~y~~~~~l~~~~veLPy 216 (361)
T cd02056 140 KIVDLVK--DLDSDTVMVLVNYIYFKGKWEKPFDPELTQEEDFFVDEKTTVKVPMMHQTGR-YDYLHDSELSCTVVQMPY 216 (361)
T ss_pred hHHhhcC--CCCCCceEEEEEEEeeeehccCCCCcccCcccCCEeCCCcEEEeecccccCc-EeeEEcCCCCcEEEEEec
Confidence 9999996 7999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CCcEEEEEeecCCCCCCC
Q psy2651 324 GVSISFIIKSQVVPEMGR 341 (342)
Q Consensus 324 ~~~~SMlI~~~ILP~~g~ 341 (342)
++++||+| |||+++.
T Consensus 217 ~~~~sm~i---iLP~~~~ 231 (361)
T cd02056 217 KGNATAFF---VLPDEGK 231 (361)
T ss_pred CCCcEEEE---EecCcch
Confidence 33589999 8999863
No 11
>cd02045 antithrombin-III_like Antithrombin is a serine proteinase inhibitor (serpin) which controls the process of coagulation. It is the most important anticoagulant molecule in mammalian circulation systems, controlled by its interaction with the co-factor, heparin, which accelerates its interaction with target proteases, such as thrombin and factor Xa. This subgroup corresponds to clade C of the serpin superfamily.
Probab=100.00 E-value=9.7e-48 Score=378.60 Aligned_cols=230 Identities=30% Similarity=0.526 Sum_probs=205.0
Q ss_pred ccccccccccccccccCCcchhhhhhhhhhhhhcc--CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccc
Q psy2651 83 SILDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN--KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETL 160 (342)
Q Consensus 83 ~~~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~--~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~ 160 (342)
...+ +||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++.....
T Consensus 7 ~~~~-~Fa~~l~~-----------------~l~~~~~~~~Niv~SP~si~~aL~ml~~GA~g~T~~el~~~L~~~~~~~~ 68 (381)
T cd02045 7 KANS-RFALAFYK-----------------HLADSKSNDENIFLSPLSISTAFAMTKLGACNNTLEQLMEVFQFDTISEK 68 (381)
T ss_pred hhhh-HHHHHHHH-----------------HHhcccCCCCCEEECcHHHHHHHHHHhhhcCCcHHHHHHHHhCCCccccc
Confidence 3445 99999999 88754 6789999999999999999999999999999999999642100
Q ss_pred hhcccchhHHHHHHHHHHHHHhC-C--Cc-chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCc-HHHHHhhch
Q psy2651 161 LKDYKGIIDQLSKDYKGIIDQLS-K--SP-ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP-PAAAKEMND 235 (342)
Q Consensus 161 ~~~~~~~~~~v~~~~~~l~~~l~-~--~~-~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~-~~a~~~IN~ 235 (342)
. .+.++..++.+...+. . .+ .+.++|++|++++++++++|.+.++++|+++++.+||.++ ..++..||+
T Consensus 69 ~------~~~~~~~~~~l~~~~~~~~~~~~~l~~an~l~~~~~~~l~~~f~~~~~~~y~~~~~~vdF~~~~~~~~~~IN~ 142 (381)
T cd02045 69 T------SDQVHFFFAKLNCRLYRKANKSSELISANRLFGDKSLTFNETYQDISEIVYGAKLWPLDFKEKPELSRITINE 142 (381)
T ss_pred c------HHHHHHHHHHHHHHHhcccCCcchhhhhhhhhhcCCCchhHHHHHHHHHhhcCeeEEecCCCCHHHHHHHHHH
Confidence 0 0127777888776662 2 22 8999999999999999999999999999999999999754 557789999
Q ss_pred hhhcccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCC
Q psy2651 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDG 315 (342)
Q Consensus 236 WV~~~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~ 315 (342)
||+++|+|+|++++++++++++|+++|+||+||||.|+.+|++..|+.++||..+|++++||||++.+. |+|+++++++
T Consensus 143 wv~~~T~g~I~~ll~~~~l~~~t~lvlvna~~Fkg~W~~~F~~~~T~~~~F~~~~g~~~~V~mM~~~~~-~~y~~~~~~~ 221 (381)
T cd02045 143 WIANKTENRITDVIPEGAIDTNTVLVLVNAIYFKGLWKSKFDKENTRKDLFHKAPGEKCPVPMMYQESK-FRYAKIPEDK 221 (381)
T ss_pred HHHHHHhhHHHhhCCCCCCCCccceeeEeeeEEeccccCCCCcccCcccccCcCCCcEEEEeccCccce-eeeEecCCCC
Confidence 999999999999999889999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred eEEEEEeC-CCcEEEEEeecCCCCCC
Q psy2651 316 FKMLELPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 316 ~~vLELPY-~~~~SMlI~~~ILP~~g 340 (342)
+++||||| ++++||+| |||+++
T Consensus 222 ~~~l~LPy~~~~~sm~i---ilP~~~ 244 (381)
T cd02045 222 VQVLELPYKGDDITMVL---ILPKEG 244 (381)
T ss_pred cEEEEeecCCCceEEEE---EeCCCC
Confidence 99999999 99999999 899975
No 12
>cd02051 PAI-1_nexin-1 Plasminogen activator inhibitor-1_like. Plasminogen activator inhibitor-1 (PAI-1) is the primary, fast-acting inhibitor of plasminogen activators. It is often bound to vitronectin, an abundant component of the extracellular matrix in many tissues. Protease nexin-1 is a potent serpin able to inhibit thrombin, plasmin, and plasminogen activators. PAI-1 and nexin-1 are members of the serpin superfamily and represent clade E. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=100.00 E-value=1.3e-47 Score=377.13 Aligned_cols=224 Identities=31% Similarity=0.537 Sum_probs=204.4
Q ss_pred ccccccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccch
Q psy2651 83 SILDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLL 161 (342)
Q Consensus 83 ~~~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~ 161 (342)
...+ +|+++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++...
T Consensus 9 ~~~~-~F~~~l~~-----------------~~~~~~~~~N~v~SP~si~~~L~~l~~GA~g~T~~el~~~L~~~~~~--- 67 (377)
T cd02051 9 ELGS-DFGIQVFN-----------------QVAQARPQENVVVSPHGIASVLGMLQLGADGKTKKQLQTVMRYKING--- 67 (377)
T ss_pred HHHh-HHHHHHHH-----------------HHHhcCCCCcEEECcHHHHHHHHHHHhhcCCcHHHHHHHHhCCChhH---
Confidence 3445 99999999 88776 88999999999999999999999999999999999997533
Q ss_pred hcccchhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhh
Q psy2651 162 KDYKGIIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVS 238 (342)
Q Consensus 162 ~~~~~~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~ 238 (342)
+...++.+.+.+.... .+.++|++|++++++++++|.+.++++|+++++.+||.+++.+++.||+||+
T Consensus 68 ---------~~~~~~~l~~~l~~~~~~~~l~~an~i~~~~~~~l~~~f~~~~~~~f~a~~~~vdF~~~~~a~~~IN~Wv~ 138 (377)
T cd02051 68 ---------VAKALKKLNKAIVSKKNKDIVTTANAVFAQSGFKMEVPFVPRNKEVFQCEVKSVDFSDPETAAFSINDWVK 138 (377)
T ss_pred ---------HHHHHHHHHHHHhccCCccchHHHHHHHhcCCCchhHHHHHHHHHHhcCeeEEECCCCHHHHHHHHHHHHH
Confidence 6677777777764332 8999999999999999999999999999999999999988889999999999
Q ss_pred cccCCccccCCCCC-CCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCC---C
Q psy2651 239 NHTNDKIKDLIKAD-SLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGE---D 314 (342)
Q Consensus 239 ~~T~g~I~~ll~~~-~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~---l 314 (342)
++|+|+|++++++. .++++|+++|+||+||||.|+++|++..|++++||..+|++++||||++.+. |+|++.++ +
T Consensus 139 ~~T~g~I~~~l~~~~~i~~~t~l~lvnai~Fkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~~~~~~~~~~~ 217 (377)
T cd02051 139 NETKGMIDNLLSPDLADDALTRLVLVNALYFKGLWKSRFQPESTKKRTFHAGDGKTYQVPMLAQLSV-FRSGSASTPNGL 217 (377)
T ss_pred HhcCCCccccCCCCCCCCccceEEEEeeeEeeeeecCCCChhhCcccccCcCCCcEEeehhhcccCc-eeeEeecccccc
Confidence 99999999999877 7889999999999999999999999999999999999999999999999998 99998753 4
Q ss_pred CeEEEEEeC-CCcEEEEEeecCCCCCC
Q psy2651 315 GFKMLELPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 315 ~~~vLELPY-~~~~SMlI~~~ILP~~g 340 (342)
+++|||||| ++++||+| |||+++
T Consensus 218 ~~~vv~LPy~~~~~sm~i---iLP~~~ 241 (377)
T cd02051 218 WYNIIELPYHGESISMLI---ALPTEK 241 (377)
T ss_pred ccEEEEEecCCCeEEEEE---Eecccc
Confidence 589999999 99999999 899864
No 13
>KOG2392|consensus
Probab=100.00 E-value=2.1e-47 Score=375.75 Aligned_cols=225 Identities=37% Similarity=0.645 Sum_probs=209.0
Q ss_pred ccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCccc-chhcc
Q psy2651 87 QRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSET-LLKDY 164 (342)
Q Consensus 87 ~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~-~~~~~ 164 (342)
.+|+++||+ .++.. +++|+||||+||+.+|+|+++||+|+|++||+++|+++..+. .+
T Consensus 12 ~~f~~~l~~-----------------~~~~~~~~~Ni~fSP~SI~~aL~m~~lGa~g~T~~qi~~~L~~~~~~~~~~--- 71 (380)
T KOG2392|consen 12 ADFALDLYR-----------------QLAKSAPDENVVFSPLSISSALAMVSLGAKGETADQILKALHFNSTDEENE--- 71 (380)
T ss_pred hHHHHHHHH-----------------HHHhhCCCCCEEEChHHHHHHHHHHHhcCCccHHHHHHHHhCCCCCcchHH---
Confidence 389999999 88866 899999999999999999999999999999999999997652 22
Q ss_pred cchhHHHHHHHHHHHHHhCCC--c-chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCC-CcHHHHHhhchhhhcc
Q psy2651 165 KGIIDQLSKDYKGIIDQLSKS--P-ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFS-QPPAAAKEMNDWVSNH 240 (342)
Q Consensus 165 ~~~~~~v~~~~~~l~~~l~~~--~-~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~-~~~~a~~~IN~WV~~~ 240 (342)
++..++.++..+... + .++++|++|+++++.+.++|.+.++++|+++++++||. +++++++.||+||+++
T Consensus 72 ------~~~~~~~~~~~~~~~~~~~~l~~an~l~~~~~~~~~~~f~~~~~~~y~a~~~~~dF~~~~e~~~~~IN~wv~~~ 145 (380)
T KOG2392|consen 72 ------VHESFQSLLLLLNSTESGYELKLANRLFVSKSLKLLQKFLELVKKLYKAEAESLDFSNDTEEAAKEINEWVEEH 145 (380)
T ss_pred ------HHHHHHHHHHHhccccCCceEEEeeeheecCCccccHHHHHHHHHHHhCcceeecCccChHHHHHHHHHHHHHH
Confidence 888888877533222 2 89999999999999999999999999999999999999 6788999999999999
Q ss_pred cCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEE
Q psy2651 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLE 320 (342)
Q Consensus 241 T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLE 320 (342)
|+|+|+++++++++++.|.++|+|||||||.|+++|+++.|+..+|+.++++.++||||++.+. |+|+++.++.++++|
T Consensus 146 T~gkI~~ll~~~~~~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~~~~v~VpmM~~~~~-f~~~~~~~l~~~vl~ 224 (380)
T KOG2392|consen 146 TNGKIKDLLSPDSIDSLTVLVLVNAIYFKGKWEKKFDKELTKESDFFLSEGTSVKVPMMHQEGS-FRYAEDEDLFAVVLE 224 (380)
T ss_pred cCCchhhhcCCCCCCcchhheeeehheeehhhcCCCChhhccccccEECCCeEEEeechhccCc-cceEEeCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EeC-CCcEEEEEeecCCCCCCC
Q psy2651 321 LPY-GVSISFIIKSQVVPEMGR 341 (342)
Q Consensus 321 LPY-~~~~SMlI~~~ILP~~g~ 341 (342)
||| +.++||+| |||+++.
T Consensus 225 LpY~~~~~sm~i---~LP~~~~ 243 (380)
T KOG2392|consen 225 LPYKGSNLSMLI---LLPDERD 243 (380)
T ss_pred CccCCCCeEEEE---EeCCCCC
Confidence 999 99999999 8999853
No 14
>cd02052 PEDF Pigment epithelium-derived factor (PEDF)_like. PEDF is non-inhibitory member of the Serpin superfamily. It exhibits neurotrophic, neuroprotective and antiangiogenic properties and is widely expressed in the developing and adult nervous systems. This subgroup corresponds to clade F1 of the serpin superfamily.
Probab=100.00 E-value=5.9e-47 Score=372.18 Aligned_cols=218 Identities=24% Similarity=0.423 Sum_probs=200.9
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++... +++|+++||+||+.+|+||+.||+|+|++||.++||++.....+
T Consensus 21 ~Fa~~l~~-----------------~l~~~~~~~Nvv~SP~si~~~L~ml~~GA~g~T~~ql~~~L~~~~~~~~~----- 78 (374)
T cd02052 21 NFGYDLYR-----------------QQASRDPTANVFLSPLSIATALSQLSLGAGERTESQIHRALYYDLLNDPE----- 78 (374)
T ss_pred HHHHHHHH-----------------HHhccCCCCcEEEChHHHHHHHHHHHhccChHHHHHHHHHhCCCCCChHH-----
Confidence 89999999 88766 78999999999999999999999999999999999986543223
Q ss_pred hhHHHHHHHHHHHHHhCCCc-chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhcccCCcc
Q psy2651 167 IIDQLSKDYKGIIDQLSKSP-ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKI 245 (342)
Q Consensus 167 ~~~~v~~~~~~l~~~l~~~~-~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~T~g~I 245 (342)
++..++.++..+..++ .++++|++|++++++++++|.+.++++|+++++.+||.. ++++.||+||+++|+|+|
T Consensus 79 ----~~~~~~~l~~~l~~~~~~l~~an~i~v~~~~~l~~~f~~~~~~~~~~~~~~~~~~~--~~~~~IN~wv~~~T~g~I 152 (374)
T cd02052 79 ----LHDTYKDLLASLTAPAKGLKSASRILLERKLRLRLEFVNQVEKSYGERPRILAGNA--LDLQEINDWVQQQTGGKV 152 (374)
T ss_pred ----HHHHHHHHHHHhcCCCccchhhhHHHHhCCCchhHHHHHHHHHHhhCccccccCCH--HHHHHHHHHHHHhhcCcH
Confidence 8889999999887655 899999999999999999999999999999999999854 588899999999999999
Q ss_pred ccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeec-ceeeeEEEeCCCCeEEEEEeC-
Q psy2651 246 KDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVK-DSFYMYEEAGEDGFKMLELPY- 323 (342)
Q Consensus 246 ~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~-~~~f~y~~~~~l~~~vLELPY- 323 (342)
+++++ +++++|+++|+||+||||.|+.+|++..|+.++||.++|++++||||++. +. ++|+++++++++||||||
T Consensus 153 ~~~l~--~i~~~t~l~lvNa~yFkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~~-~~y~~~~~~~~~vveLPy~ 229 (374)
T cd02052 153 DRFVK--EIPRNVSILLLGSAYFKGQWITKFDKRNTVLTDFHLDEQRTVVVPMMSDPNAP-VRYGLDSDLNCKIAQLPLT 229 (374)
T ss_pred HHhCC--CCCCccceEEEeeEEEechhcCCCCcccCccccEEcCCCcEEEEEeeccCCcc-eeeEEcCCCCcEEEEEecC
Confidence 99997 49999999999999999999999999999999999999999999999985 46 999999999999999999
Q ss_pred CCcEEEEEeecCCCCCC
Q psy2651 324 GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 324 ~~~~SMlI~~~ILP~~g 340 (342)
+ ++||+| |||++.
T Consensus 230 ~-~~sm~i---iLP~~~ 242 (374)
T cd02052 230 G-GVSIMF---FLPDKV 242 (374)
T ss_pred C-CeEEEE---EecCCC
Confidence 6 699999 899874
No 15
>cd02049 bacterial_SERPIN SERine Proteinase INhibitors (serpins), prokaryotic subgroup. Little information about specific functions is available for this subgroup, most likely they are inhibitory members of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors.
Probab=100.00 E-value=5.4e-47 Score=370.86 Aligned_cols=220 Identities=33% Similarity=0.607 Sum_probs=202.4
Q ss_pred ccccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhc
Q psy2651 85 LDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKD 163 (342)
Q Consensus 85 ~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~ 163 (342)
.+ +||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++..+..+
T Consensus 5 ~~-~F~~~l~~-----------------~~~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~ql~~~L~~~~~~~~~-- 64 (364)
T cd02049 5 NT-RFGFKLFS-----------------ELNKEDVEKNIFISPLSIALALSMTYNGADGTTRKEMLKALGLDNIDLED-- 64 (364)
T ss_pred hh-HHHHHHHH-----------------HHhhcCCCCCEEECHHHHHHHHHHHhhhcCchHHHHHHHHhCCCCCCHHH--
Confidence 45 99999999 88776 78999999999999999999999999999999999998644233
Q ss_pred ccchhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhcc
Q psy2651 164 YKGIIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNH 240 (342)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~ 240 (342)
++..++.+...+.+.+ .+.++|++|++++++++++|.+.++++|+++++.+||.++ .++++||+||+++
T Consensus 65 -------~~~~~~~l~~~l~~~~~~~~l~~an~i~~~~~~~~~~~f~~~~~~~~~~~v~~~dF~~~-~a~~~IN~wv~~~ 136 (364)
T cd02049 65 -------LNSALATLMDQLNTHDKTVELIIANSIWIEPGFTLKPDFLQTIKDYYQAYVLELDFQSP-AAAEEINRWVKEK 136 (364)
T ss_pred -------HHHHHHHHHHHHhcCCCCcEEEeehhhHhhCCCCccHHHHHHHHHhhcccceeeCCCCH-HHHHHHHHHHHHh
Confidence 8888888888876542 8999999999999999999999999999999999999986 4889999999999
Q ss_pred cCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEE
Q psy2651 241 TNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLE 320 (342)
Q Consensus 241 T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLE 320 (342)
|+|+|++++. .++++|+++|+||+||+|.|+++|++..|++++|+..+|+.++||||++.+. |+|++.+ ++++||
T Consensus 137 T~g~I~~~~~--~i~~~t~lvlvna~~fk~~W~~~F~~~~T~~~~F~~~~~~~~~v~mM~~~~~-~~y~~~~--~~~~l~ 211 (364)
T cd02049 137 TKGKIDKIVD--KIDPDDVMFLINAVYFKGDWQEPFDKQSTYEAPFYLPDGSTKEVPFMSRTGN-FRYLETP--GFQAVR 211 (364)
T ss_pred hcChHHHhcC--CCCCCceEEEEeeEEEeeeecCCCChhhcccCcCCCCCCCEEECcccCCcCc-EeeEEcC--CCeEEE
Confidence 9999999997 4999999999999999999999999999999999999999999999999998 9998854 578999
Q ss_pred EeC-CCcEEEEEeecCCCCCC
Q psy2651 321 LPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 321 LPY-~~~~SMlI~~~ILP~~g 340 (342)
||| ++++||+| |||+++
T Consensus 212 Lpy~~~~~sm~i---iLP~~~ 229 (364)
T cd02049 212 LPYGDGRLSMYV---FLPKEN 229 (364)
T ss_pred eecCCCcEEEEE---EecCCC
Confidence 999 89999999 899985
No 16
>cd02055 PZI Protein Z-dependent protease inhibitor (ZPI) is a member of the serpin superfamily of proteinase inhibitors (clade A10). ZPI inhibits coagulation factor Xa , dependent on protein Z (PZ), a vitamin K-dependent plasma protein. ZPI also inhibits factor XIa in a process that does not require PZ. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms.
Probab=100.00 E-value=5.6e-47 Score=371.27 Aligned_cols=230 Identities=27% Similarity=0.457 Sum_probs=201.0
Q ss_pred ccccccccccccccccccCCcchhhhhhhhhhhhhccCCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccc
Q psy2651 81 FSSILDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETL 160 (342)
Q Consensus 81 ~~~~~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~ 160 (342)
|++..+ +||++||+ ++...+++|+|+||+||+.+|+|+++||+|+|++||.++||++.....
T Consensus 2 ~~~~~~-~Fa~~l~~-----------------~~~~~~~~Nvv~SP~si~~aL~ml~~GA~g~T~~ql~~~L~~~~~~~~ 63 (365)
T cd02055 2 FAEETA-NFGFNLLR-----------------KIAMKHDGNIIFSPFGMSLAMAGLLLAAEGETERQIAKALHLHALKDR 63 (365)
T ss_pred cchhhh-HHHHHHHH-----------------HHhcCCCCcEEEChHHHHHHHHHHHhhcCchHHHHHHHHcCCCCCccc
Confidence 445566 99999999 876556789999999999999999999999999999999999753210
Q ss_pred hhcccchhHHHHHHHHHHHHHhCCCcc--hhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhh
Q psy2651 161 LKDYKGIIDQLSKDYKGIIDQLSKSPE--LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVS 238 (342)
Q Consensus 161 ~~~~~~~~~~v~~~~~~l~~~l~~~~~--l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~ 238 (342)
. .+.++..++.+.+.+..... +..++++|++++++++++|.+.++++|+++++.+||.++.++++.||+||+
T Consensus 64 ~------~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~v~~~~~l~~~F~~~~~~~y~~~~~~vdF~~~~~a~~~IN~wv~ 137 (365)
T cd02055 64 D------PGLLPALFKGLKDNISRNEELGFTQGIFAFIHKDFDVKEAFFNLSKQYFDMECLCMDFQNASQAKFLINHNIK 137 (365)
T ss_pred c------HHHHHHHHHHHHHHhcCCcceehHHHHHHHHHCCCCccHHHHHHHHHHhcCeeEEECCCChHHHHHHHHHHHH
Confidence 0 01156677777777654334 444455699999999999999999999999999999988878899999999
Q ss_pred cccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEE
Q psy2651 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKM 318 (342)
Q Consensus 239 ~~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~v 318 (342)
++|+|+|+++++ +++++|+++|+||+||||.|+.+|++..|..++||.++|+.++||||++.+. |+|+++++++++|
T Consensus 138 ~~T~g~I~~~~~--~i~~~t~l~lvnai~Fkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~~~~~~~~~~~v 214 (365)
T cd02055 138 KETKGKIPELFD--EIDPESKLILLDYIFFKGKWLTPFDPEFTEIDTFHIDKYKSIKVPMMFGADK-FASTFDENFRCHV 214 (365)
T ss_pred HhhcchHHHHhh--cCCccchhhhhHHHHHHHHHhCCCChhhCccceEEcCCCcEEEehhhcccCc-eeeEEeCCCCeEE
Confidence 999999999996 7899999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCC
Q psy2651 319 LELPYGVSISFIIKSQVVPEMG 340 (342)
Q Consensus 319 LELPY~~~~SMlI~~~ILP~~g 340 (342)
|+|||+++.+|+| |||+++
T Consensus 215 v~LPy~~~~sm~i---iLP~~~ 233 (365)
T cd02055 215 IKLPYKGKATMLI---VIMEKG 233 (365)
T ss_pred EEeeeCCCcEEEE---EEcCCC
Confidence 9999933589999 799975
No 17
>smart00093 SERPIN SERine Proteinase INhibitors.
Probab=100.00 E-value=2.3e-46 Score=365.55 Aligned_cols=215 Identities=37% Similarity=0.665 Sum_probs=195.7
Q ss_pred hhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccchhHHHHHHHHHHHHHhCCCc---ch
Q psy2651 113 NLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIIDQLSKSP---EL 188 (342)
Q Consensus 113 ~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~~~~~v~~~~~~l~~~l~~~~---~l 188 (342)
++... +++|+|+||+||+.+|+|++.||+|+|++||.++||++..+.... .++..++.++..+...+ .+
T Consensus 6 ~l~~~~~~~N~v~SP~si~~~L~ml~~GA~g~T~~el~~~L~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~l 78 (359)
T smart00093 6 ELAKESPDKNIFFSPVSISSALAMLSLGAKGSTATQILEVLGFNLTELSEA-------DIHQGFQHLLQLLNRPDSQLEL 78 (359)
T ss_pred HHhccCCCCeEEEChHHHHHHHHHHHcccCchHHHHHHHHcCCCCCCCCHH-------HHHHHHHHHHHHHhCCCCcceE
Confidence 77666 788999999999999999999999999999999999986542111 28888999988886543 79
Q ss_pred hhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCc-HHHHHhhchhhhcccCCccccCCCCCCCCcccceeeeeecc
Q psy2651 189 KIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP-PAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIH 267 (342)
Q Consensus 189 ~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~-~~a~~~IN~WV~~~T~g~I~~ll~~~~i~~~t~lvLvNaiy 267 (342)
.++|++|++++++++++|.+.++++|+++++.+||.++ +.+++.||+||+++|+|+|+++++ +++++|+++|+||+|
T Consensus 79 ~~an~i~~~~~~~l~~~f~~~~~~~~~~~~~~~dF~~~~~~a~~~IN~wv~~~T~g~I~~~~~--~i~~~t~lvlvnaiy 156 (359)
T smart00093 79 KTANALFVDKSLKLKDSFLEDIKKLYGAEVQSVDFSDKAEEAKKQINDWVEKKTQGKIKDLLS--DLDSDTRLVLVNAIY 156 (359)
T ss_pred EeeeeehccCCCchhHHHHHHHHHHhcCeeEEecCCCCHHHHHHHHHHHHHHhhhchHHHhcc--cCCCCceEEEEeeEE
Confidence 99999999999999999999999999999999999985 569999999999999999999997 489999999999999
Q ss_pred ccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEeC-CCcEEEEEeecCCCCCC
Q psy2651 268 FKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 268 Fkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELPY-~~~~SMlI~~~ILP~~g 340 (342)
|||.|+.+|++..|.+++|+..+|+.++||||++.+..|+|+++++++++|||||| + ++||+| |||+++
T Consensus 157 Fkg~W~~~F~~~~T~~~~F~~~~g~~~~V~mM~~~~~~~~y~~~~~~~~~vv~Lpy~~-~~sm~i---ilP~~~ 226 (359)
T smart00093 157 FKGKWKTPFDPELTREEDFHVDETTTVKVPMMSQTGRTFNYGHDEELNCQVLELPYKG-NASMLI---ILPDEG 226 (359)
T ss_pred EeeECCCCCCcccceecccEeCCCeEEEEeceeccCceeEEEEcCCCCcEEEEEecCC-CeeEEE---EccCcc
Confidence 99999999999999999999999999999999998743899999999999999999 7 799999 899975
No 18
>PF00079 Serpin: Serpin (serine protease inhibitor); InterPro: IPR023796 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Serpins (SERine Proteinase INhibitors) [, , ] belong to MEROPS inhibitor family I4, clan ID. Serpins are proteins that are primarily known as irreversible serine protease inhibitors active against S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO) and C14 (IPR002398 from INTERPRO) peptidases. There are both extra- and intra-cellular serpins, which are found in all groups of organisms with the notable exception of fungi [, ]. In contrast to "rigid" proteinase inhibitors, such as those of the Kunitz or Kazal families, the serpins are metastable proteins (active-state proteins) which interact with their substrate and irreversibly trap the acyl intermediate as a result of a major conformational change []; they are best described as suicide substrate inhibitors. The common structure of these proteins is a multi-domain fold containing a bundle of 8 or 9 alpha helices and a beta sandwich formed by 3 beta sheets. The reactive centre loop (RCL) is found in the C-terminal part of these proteins. Serpins and their homologues are a group of high molecular weight (40 to 50 kDa) structurally related proteins involved in a number of fundamental biological processes such as blood coagulation, complement activation, fibrinolysis, angiogenesis, inflammation, tumour suppression and hormone transport. All known serpins have been classified into 16 clades and 10 orphan sequences; the vertebrate serpins can be conveniently classified into six sub-groups []. In human plasma they represent approximately 2% of the total protein, of which 70% is alpha-1-antitrypsin. On the basis of strong sequence similarities, a number of proteins with no known inhibitory activity also belong to this family, these include: angiotensinogen, corticosteroid-binding globulin and thyroxin-binding globulin []. This entry represents the structural domain of serpins. It consists of a cluster of helices and a beta-sandwich.; PDB: 3PZF_A 3B9F_I 1MTP_A 1SNG_A 1ANT_I 2ZNH_B 1BR8_I 1SR5_A 1E03_L 1AZX_L ....
Probab=100.00 E-value=1e-46 Score=368.01 Aligned_cols=224 Identities=40% Similarity=0.728 Sum_probs=209.5
Q ss_pred ccccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhc
Q psy2651 85 LDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKD 163 (342)
Q Consensus 85 ~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~ 163 (342)
.+ +||++||+ .+... +++|+|+||+||+.+|+||+.||+|+|++||.++||++..+..+
T Consensus 3 ~~-~f~~~L~~-----------------~~~~~~~~~N~v~SP~si~~~L~~l~~ga~g~T~~el~~~L~~~~~~~~~-- 62 (371)
T PF00079_consen 3 NN-QFALKLFK-----------------ALSKSNPDENFVFSPLSIYSALAMLYLGASGETRKELRKVLGLPGSDDEE-- 62 (371)
T ss_dssp HH-HHHHHHHH-----------------HHHHHSTTSSEEE-HHHHHHHHHHHHHTSCHHHHHHHHHHTTCTTSTHHH--
T ss_pred HH-HHHHHHHH-----------------HHHhhCCCCcEEEChHHHHHHHHHHHhhccCCHHHHHHHHhhhccccccc--
Confidence 35 89999999 88877 79999999999999999999999999999999999998654334
Q ss_pred ccchhHHHHHHHHHHHHHhCC-C--c-chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhc
Q psy2651 164 YKGIIDQLSKDYKGIIDQLSK-S--P-ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239 (342)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~l~~-~--~-~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~ 239 (342)
++..++.++..+.. . . .+.++|++|++++++++++|.+.++++|+++++.+||.++..+++.||+||++
T Consensus 63 -------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~df~~~~~~~~~IN~wv~~ 135 (371)
T PF00079_consen 63 -------IHEYFKKLLQSLNSSPSDNPQLKLANKLFVDKNLPLKPEFKKTLKKYFNAEVESVDFSDPPQAAKEINKWVSE 135 (371)
T ss_dssp -------HHHHHHHHHHHHHSCSTSSSEEEEEEEEEEETTSEBEHHHHHHHHHHHSEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred -------chhhhhhhhhhhhccccccccceeeeeeecccccccccccchhhhhccccccccccccccchhhhhhcchhhh
Confidence 88899999998876 2 2 89999999999999999999999999999999999999998899999999999
Q ss_pred ccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEE
Q psy2651 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKML 319 (342)
Q Consensus 240 ~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vL 319 (342)
+|+|+|++++++++++++|.++|+||+||+|.|+.+|++.+|..++|+..+|+.++||||++.+. ++|++.++++++||
T Consensus 136 ~T~g~I~~~v~~~~i~~~t~~vlina~~f~~~W~~~F~~~~t~~~~F~~~~g~~~~v~mM~~~~~-~~~~~~~~l~~~~v 214 (371)
T PF00079_consen 136 KTNGKIKNLVSPNDIDPDTRLVLINAIYFKGKWKYPFDPENTEKRPFYVSDGKSVSVPMMHQSGR-FRYAEDEDLDAQVV 214 (371)
T ss_dssp HTTTSSSTSSSTTSSSTTEEEEEEEEEEEEEEBSSTEEGGGEEEEEEECSSSEEEEEEEEEEEEE-EEEEEETTTTEEEE
T ss_pred hccceeeccccccchhhHHHHhhcccccccccccccccccccccccccccccccceEEEEecccc-cccccccccceeEE
Confidence 99999999999989999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEeC-CCcEEEEEeecCCCCCC
Q psy2651 320 ELPY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 320 ELPY-~~~~SMlI~~~ILP~~g 340 (342)
|||| + ++||+| |||+++
T Consensus 215 ~Lp~~~-~~sm~i---ilP~~~ 232 (371)
T PF00079_consen 215 ELPYKG-NFSMLI---ILPDEG 232 (371)
T ss_dssp EEEBST-SEEEEE---EEESST
T ss_pred Eecccc-ceeeEE---EEeccc
Confidence 9999 7 999999 899975
No 19
>cd02047 HCII Heparin cofactor II (HCII) inhibits thrombin, the final protease of the coagulation cascade. HCII is allosterically activated by binding to cell surface glycosaminoglycans (GAGs). The specificity of HCII for thrombin is conferred by a highly acidic hirudin-like N-terminal tail, which becomes available after GAG binding for interaction with the anion-binding exosite I of thrombin. This subgroup corresponds to clade D of the serpin superfamily.
Probab=100.00 E-value=7.9e-46 Score=370.53 Aligned_cols=226 Identities=26% Similarity=0.471 Sum_probs=199.7
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc--CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN--KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYK 165 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~--~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~ 165 (342)
+||++||+ .+... +++|+++||+||+.+|+||+.||+|+|++||.++||++.......+
T Consensus 71 ~Fa~~L~~-----------------~l~~~~~~~~Niv~SP~SI~~aLaml~~GA~G~T~~ql~~~Lg~~~~~~~~~~-- 131 (436)
T cd02047 71 NFGFNLYR-----------------VLKDQVNTSDNILLAPVGISTAMGMISLGLKGQTQEQVLSTLGFKDFVNASSK-- 131 (436)
T ss_pred HHHHHHHH-----------------HHhhccCCCCcEEEChHHHHHHHHHHHhhcccHHHHHHHHHhccccccccccc--
Confidence 89999999 88753 6789999999999999999999999999999999999641000000
Q ss_pred chhHHHHHHHHHHHHHhCCCc---chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhcccC
Q psy2651 166 GIIDQLSKDYKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTN 242 (342)
Q Consensus 166 ~~~~~v~~~~~~l~~~l~~~~---~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~T~ 242 (342)
.....+++.|+.+.+.+.... .+.++|++|++++++++++|.+.++++|+++++.+||.++. ++..||+||+++|+
T Consensus 132 ~~~~~~~~~~~~l~~~l~~~~~~~~L~~an~l~v~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~-~~~~IN~wV~~~T~ 210 (436)
T cd02047 132 YEITTVHNLFRKLTHRLFRRNFGYTLRSVNDLYIKKDFPILLDFKNNVKTYYFAEAQIADFSDPA-FITKTNNRIQKLTK 210 (436)
T ss_pred ccHHHHHHHHHHHHHHhhcCCCCcEEeeeeehhhhCCCCccHHHHHHHHHHhcCceEEeCCCCHH-HHHHHHHHHHHhcC
Confidence 001127788888887764432 79999999999999999999999999999999999998875 45689999999999
Q ss_pred CccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEe
Q psy2651 243 DKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELP 322 (342)
Q Consensus 243 g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELP 322 (342)
|+|++++. .++++|+++|+||+||||.|+.+|++..|..++|+.++|++++||||++.+. |+|++.++++++|||||
T Consensus 211 g~I~~~l~--~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~~~~v~V~MM~~~~~-~~y~~~~~l~~~vleLP 287 (436)
T cd02047 211 GLIKEALE--NVDPATLMMILNCIYFKGTWENKFPVEMTHNRNFRLNEKEVVKVPMMQTKGN-FLAAADPELDCDILQLP 287 (436)
T ss_pred Cccccccc--cCCcccceeeeeeeEEechhhCcCCcccccCcCCEeCCCCEEEEehhcccce-EEEEEcCCcCcEEEEec
Confidence 99999996 7899999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred C-CCcEEEEEeecCCCCCC
Q psy2651 323 Y-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 323 Y-~~~~SMlI~~~ILP~~g 340 (342)
| + ++||+| |||+++
T Consensus 288 y~~-~~SM~i---iLP~~~ 302 (436)
T cd02047 288 YVG-NISMLI---VVPHKL 302 (436)
T ss_pred CCC-CeeEEE---EeCccc
Confidence 9 7 599999 899875
No 20
>cd02043 plant_SERPIN SERine Proteinase INhibitors (serpins), plant specific subgroup. It has been suggested that plant serpins play a role in defense against insect predators. This subgroup corresponds to clade P of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=100.00 E-value=7.2e-46 Score=365.17 Aligned_cols=219 Identities=35% Similarity=0.549 Sum_probs=198.0
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc--CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN--KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYK 165 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~--~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~ 165 (342)
+||++||+ ++... +++|+|+||+||+.+|+||++||+|+|++||.++||++... +
T Consensus 5 ~~~~~l~~-----------------~~~~~~~~~~N~v~SP~si~~aL~ml~~GA~g~T~~ql~~~L~~~~~~--~---- 61 (381)
T cd02043 5 LVAMRLSG-----------------HVAAAAGKGSNVIFSPLSINVALSLVAAGARGETLDQLLSFLGSPSTD--E---- 61 (381)
T ss_pred HHHHHHHH-----------------HHhccCCCCCcEEECHHHHHHHHHHHhcccCCcHHHHHHHHhCCCChH--H----
Confidence 89999999 88776 67899999999999999999999999999999999987433 3
Q ss_pred chhHHHHHHHHHHHHHhCC-----Cc-chhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCC-cHHHHHhhchhhh
Q psy2651 166 GIIDQLSKDYKGIIDQLSK-----SP-ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQ-PPAAAKEMNDWVS 238 (342)
Q Consensus 166 ~~~~~v~~~~~~l~~~l~~-----~~-~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~-~~~a~~~IN~WV~ 238 (342)
++..++.+...+.. .. .+.++|+||+++++++.++|.+.++++|+++++.+||.+ ++++++.||+||+
T Consensus 62 -----~~~~~~~l~~~~~~~~~~~~~~~l~~an~l~~~~~~~~~~~f~~~~~~~y~~~~~~vdF~~~~~~a~~~IN~wv~ 136 (381)
T cd02043 62 -----LHAVAASIVDLVLADASASGGPRLSFANGVWVDKSLSLKPSFKDLAANSYKAEARPVDFRTKAEEVRREVNSWVE 136 (381)
T ss_pred -----HHHHHHHHHHHHhhhcccCCCcEEehhhhHHHhCCCCcCHHHHHHHHhhhhccceeecCCCCHHHHHHHHHHHHH
Confidence 67777777666532 12 899999999999999999999999999999999999976 5678999999999
Q ss_pred cccCCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEE
Q psy2651 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKM 318 (342)
Q Consensus 239 ~~T~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~v 318 (342)
++|+|+|++++++++++++|+++|+||+||+|.|+++|++..|..++||..+|++++||||++.+. +.|++.+ ++++
T Consensus 137 ~~T~g~I~~~~~~~~i~~~t~l~lvnai~Fkg~W~~~F~~~~T~~~~F~~~~g~~~~V~mM~~~~~-~~~~~~~--~~~~ 213 (381)
T cd02043 137 KATNGLIKDILPPGSVDSSTKLVLANALYFKGAWSSKFDASDTKDRDFHLLDGTSVRVPFMSSEKD-QYVAAFD--GFKV 213 (381)
T ss_pred HHhcChHHhhCCCCCcCCCceEEEEeeeEEeeeeccCCccccCccccceeCCCCeEEeeeeeccCc-ccccccC--CCEE
Confidence 999999999999889999999999999999999999999999999999999999999999999987 7776654 5899
Q ss_pred EEEeC-CC------cEEEEEeecCCCCCC
Q psy2651 319 LELPY-GV------SISFIIKSQVVPEMG 340 (342)
Q Consensus 319 LELPY-~~------~~SMlI~~~ILP~~g 340 (342)
||||| ++ ++||+| |||+++
T Consensus 214 veLPy~~~~~~~~~~~sm~i---iLP~~~ 239 (381)
T cd02043 214 LRLPYKRGGHDDARQFSMYI---YLPDKK 239 (381)
T ss_pred EEcCCCCCCCCCCCcEEEEE---EccCCC
Confidence 99999 65 599999 899975
No 21
>PHA02948 serine protease inhibitor-like protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=360.78 Aligned_cols=211 Identities=21% Similarity=0.416 Sum_probs=187.7
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKG 166 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~ 166 (342)
+||++||+ ++... +++|+||||+||+.+|+|++.||+|+|++||.++||++..+
T Consensus 23 ~f~~~l~~-----------------~l~~~~~~~Nv~~SP~Si~~aL~ml~~GA~G~T~~el~~~L~~~~~~-------- 77 (373)
T PHA02948 23 NAGILAYK-----------------NIQDGNEDDNIVFSPFGYSFSMFMSLLPASGNTRVELLKTMDLRKRD-------- 77 (373)
T ss_pred HHHHHHHH-----------------HHHhcCCCCCEEEchHHHHHHHHHHHhccCCcHHHHHHHHhCCCchh--------
Confidence 89999999 88776 78899999999999999999999999999999999996433
Q ss_pred hhHHHHHHHHHHHHHhCCC---c-c-hhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhccc
Q psy2651 167 IIDQLSKDYKGIIDQLSKS---P-E-LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHT 241 (342)
Q Consensus 167 ~~~~v~~~~~~l~~~l~~~---~-~-l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~T 241 (342)
++..++.+...+... + . +.++|++|+++++.++++|.+ .+|+++++.+||.+ .++.+||+||+++|
T Consensus 78 ----~~~~~~~l~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~f~~---~~~~~~v~~vdF~~--~a~~~IN~WV~~~T 148 (373)
T PHA02948 78 ----LGPAFTELISGLAKLKTSKYTYTDLTYQSFVDNTVCIKPSYYQ---QYHRFGLYRLNFRR--DAVNKINSIVERRS 148 (373)
T ss_pred ----HHHHHHHHHHHHhcccccCcchHHHHHHHHHhcCCCccHHHHH---HHhhCceEecCccH--HHHHHHHHHHHhcC
Confidence 777788887776542 2 3 479999999999999999997 45667999999973 58899999999998
Q ss_pred CCccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeee--EEEeCCCCeEEE
Q psy2651 242 NDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM--YEEAGEDGFKML 319 (342)
Q Consensus 242 ~g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~--y~~~~~l~~~vL 319 (342)
+|++++++++++++|+++|+||+||||.|+++|++..|++++||..+|+ ++||||++.+. +. |.+.++.+++++
T Consensus 149 --~I~~~~~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~~~-~~V~mM~~~~~-~~~~~~~~~~~~~~vl 224 (373)
T PHA02948 149 --GMSNVVDSTMLDNNTLWAIINTIYFKGTWQYPFDITKTHNASFTNKYGT-KTVPMMNVVTK-LQGNTITIDDEEYDMV 224 (373)
T ss_pred --CCcccCCCCCCCCCceEEEEEEEEEeeeecCCCCcccCeeceeEeCCCC-EEchhheeccc-cccceeeccCcCceEE
Confidence 5999998889999999999999999999999999999999999988884 79999999887 74 566778899999
Q ss_pred EEeC-CCcEEEEEeecCCCCC
Q psy2651 320 ELPY-GVSISFIIKSQVVPEM 339 (342)
Q Consensus 320 ELPY-~~~~SMlI~~~ILP~~ 339 (342)
|||| ++++||+| |||++
T Consensus 225 ~LPY~~~~~sM~i---iLP~~ 242 (373)
T PHA02948 225 RLPYKDANISMYL---AIGDN 242 (373)
T ss_pred EEecCCCcEEEEE---EcCCc
Confidence 9999 99999999 79974
No 22
>cd02053 alpha2AP Alpha2-antiplasmin (alpha2AP) is the primary inhibitor of plasmin, a proteinase that digests fibrin, the main component of blood clots. Alpha2-Antiplasmin forms an inactive 1 : 1 stoichiometric complex with plasmin. It also rapidly crosslinks to fibrin during blood clotting by activated coagulation factor XIII, and as a consequence fibrin becomes more resistant to fibrinolysis. Therefore alpha2AP is important in modulating the effectiveness and persistence of fibrin with respect to its susceptibility to digestion and removal by plasmin. This subgroup corresponds to clade F2 of the serpin superfamily.
Probab=100.00 E-value=2.9e-45 Score=357.24 Aligned_cols=217 Identities=25% Similarity=0.480 Sum_probs=188.7
Q ss_pred ccccccccccccccCCcchhhhhhhhhhhhhcc-CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhc
Q psy2651 85 LDQRFNGKLHKKEDFKPFSIQLSTLVEWNLAAN-KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKD 163 (342)
Q Consensus 85 ~~~~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~ 163 (342)
.+ +||++||+ ++... +++|+|+||+||+.+|+|++.||+|+|++||.++||++... .
T Consensus 5 ~~-~F~~~l~~-----------------~~~~~~~~~N~v~SP~si~~aL~~l~~Ga~g~T~~el~~~L~~~~~~--~-- 62 (351)
T cd02053 5 MM-GFSTDLLS-----------------EVAQESTKPNLILSPLSIALALSHLALGAQNETEQRLLKTLHAESLP--C-- 62 (351)
T ss_pred hh-hHHHHHHH-----------------HHHhhCCCCcEEECcHHHHHHHHHHHhhcChHHHHHHHHhcCCCChH--H--
Confidence 44 89999999 88776 78999999999999999999999999999999999986432 2
Q ss_pred ccchhHHHHHHHHHHHHHhCCCcchhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCC-cHHHHHhhchhhhcccC
Q psy2651 164 YKGIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQ-PPAAAKEMNDWVSNHTN 242 (342)
Q Consensus 164 ~~~~~~~v~~~~~~l~~~l~~~~~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~-~~~a~~~IN~WV~~~T~ 242 (342)
++..++.+.+... ...+.++|++|++++++++++|.+.++++|++++ +||.+ +..+++.||+||+++|+
T Consensus 63 -------~~~~~~~l~~~~~-~~~l~~an~i~v~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~~IN~wv~~~T~ 132 (351)
T cd02053 63 -------LHHLLSRLRQDLG-PGALRLATRMYLQKGFEIKESFLEESEKLYGAKP--VSLTGTKEDDLANINKWVKEATE 132 (351)
T ss_pred -------HHHHHHHHhccCC-ccEeehhhHHHHhCCCchhHHHHHHHHHHcCCEE--eecCCCCHHHHHHHHHHHHHhcc
Confidence 4444433332221 1289999999999999999999999999999976 55543 45688999999999999
Q ss_pred CccccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeec-ceeeeEEEeCCCCeEEEEE
Q psy2651 243 DKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVK-DSFYMYEEAGEDGFKMLEL 321 (342)
Q Consensus 243 g~I~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~-~~~f~y~~~~~l~~~vLEL 321 (342)
|+|+++++ +++++|.++|+||+||||.|+++|++..|++.+||..+|++++||||++. .. ++|+++++++++||||
T Consensus 133 g~I~~~~~--~~~~~t~~vlvNaiyFkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~~-~~~~~~~~~~~~vleL 209 (351)
T cd02053 133 GQIPNFLS--DLPHDTVLLLLNAIHFKGFWRNKFDPSLTQRDAFHLDDDFTVSVEMMQASTYP-LRWFHLEQPEIQVAKF 209 (351)
T ss_pred CchhHhcC--CCCcchHhheeeEEEEeeeecCCCChhcCeecceEECCCceEEeehhcccccc-eeeEecCCCCeEEEEE
Confidence 99999996 78999999999999999999999999999999999999999999999875 35 8899999999999999
Q ss_pred eC-CCcEEEEEeecCCCCCC
Q psy2651 322 PY-GVSISFIIKSQVVPEMG 340 (342)
Q Consensus 322 PY-~~~~SMlI~~~ILP~~g 340 (342)
|| + ++||+| |||+++
T Consensus 210 Py~~-~~Sm~i---iLP~~~ 225 (351)
T cd02053 210 PFKG-NMSFVV---LMPTPF 225 (351)
T ss_pred ecCC-CeEEEE---Eecccc
Confidence 99 7 599999 899874
No 23
>cd02050 C1_inh C1 inhibitor (C1-Inh) is a protease inhibitor of the serpin family. It plays a pivotal role in regulating the activation of the classical complement pathway and of the contact system, via regulating bradykinin formation, inhibiting factor XII and kallikrein of the contact system, and via acting on factor XI in the coagulation cascade. This subgroup corresponds to clade G of the serpin superfamily.
Probab=100.00 E-value=2.4e-44 Score=351.00 Aligned_cols=215 Identities=24% Similarity=0.373 Sum_probs=189.1
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhcc--CCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhccc
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAAN--KKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYK 165 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~--~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~ 165 (342)
+||++||+ ++... +++|+|+||+||+.+|+||+.||+|+|++||.++||++... .+
T Consensus 4 ~F~~~l~~-----------------~~~~~~~~~~N~v~SP~si~~aL~ml~~GA~g~T~~ql~~~L~~~~~~-~~---- 61 (352)
T cd02050 4 EFSLKLYQ-----------------HLSESAKPDTNLLFSPVSIALLLSHLLLGARGKTQRRLESILSYPHDF-AC---- 61 (352)
T ss_pred hHHHHHHH-----------------HHhhccCCCCCEEEChHHHHHHHHHHhcccCccHHHHHHHhcCCCCch-hH----
Confidence 89999999 88754 57899999999999999999999999999999999997543 22
Q ss_pred chhHHHHHHHHHHHHHhCCCcchhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCcHHHHHhhchhhhcccCCcc
Q psy2651 166 GIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKI 245 (342)
Q Consensus 166 ~~~~~v~~~~~~l~~~l~~~~~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~~~a~~~IN~WV~~~T~g~I 245 (342)
++..++++.+. ..+.++|+||++++++++++|.+.++++|++++..+||.. +.+++.||+||+++|+|+|
T Consensus 62 -----~~~~~~~l~~~----~~l~~an~i~~~~~~~l~~~f~~~~~~~y~~~~~~~~~~~-~~a~~~IN~wv~~~T~g~I 131 (352)
T cd02050 62 -----VHSALKKLKNK----LGLLSASQIFHHPDLHLRESFTNESWQFYKARPRELSNNS-ELNLEMINSWVAKATNNKI 131 (352)
T ss_pred -----HHHHHHHhhhc----chhHHHHHHHHhCCCCccHHHHHHHHHHhCCcceeecCCh-HHHHHHHHHHHHHHhcchH
Confidence 66666665443 2699999999999999999999999999999999999954 5678899999999999999
Q ss_pred ccCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEeCCC
Q psy2651 246 KDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGV 325 (342)
Q Consensus 246 ~~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELPY~~ 325 (342)
+++++ +++++|+++|+||+||||.|+++|++..|+..+|+.+++ +++||||++....+.|++.+++++++++|||.+
T Consensus 132 ~~~~~--~i~~~t~l~lvnaiyFkg~W~~~F~~~~T~~~~F~~~~~-~~~V~mM~~~~~~~~~~~~~~l~~~v~~lp~~~ 208 (352)
T cd02050 132 PRLLD--SLPSETRLVLLNAVYFQAQWKKKFDTKHTVLLPFKRNGD-PVKVPVMYSKKYPVASFTDPRLKAQVGRLELSG 208 (352)
T ss_pred HHHhc--ccCCCceEEEEeeEEEeeecCCCCCcccCccCceeECCc-eEEeeEeecCccceeeEEcCCcCeEEEEecCCC
Confidence 99995 799999999999999999999999999999999998755 899999997642256677889999999999944
Q ss_pred cEEEEEeecCCCCCC
Q psy2651 326 SISFIIKSQVVPEMG 340 (342)
Q Consensus 326 ~~SMlI~~~ILP~~g 340 (342)
++||+| |||+++
T Consensus 209 ~~sm~i---iLP~~~ 220 (352)
T cd02050 209 GLSLVV---LVPRGP 220 (352)
T ss_pred ceEEEE---EeeCCC
Confidence 699999 899863
No 24
>PHA02660 serpin-like protein; Provisional
Probab=100.00 E-value=7.8e-42 Score=334.73 Aligned_cols=197 Identities=23% Similarity=0.378 Sum_probs=175.6
Q ss_pred cccccccccccCCcchhhhhhhhhhhhhccCCCCEEEChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcccchhcccch
Q psy2651 88 RFNGKLHKKEDFKPFSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGI 167 (342)
Q Consensus 88 ~Fa~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~Niv~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~~ 167 (342)
+||++||+ ++. ++|+|+||+||+.+|+|++.||+|+|++||.++||+....
T Consensus 17 ~f~~~l~~-----------------~~~---~~Nvv~SP~Si~~aL~ml~~GA~G~T~~el~~~L~~~~~~--------- 67 (364)
T PHA02660 17 DLGFCILK-----------------SLH---RFNIVFSPESLKAFLHVLYLGSERETKNELSKYIGHAYSP--------- 67 (364)
T ss_pred HHHHHHHH-----------------hcC---CCCEEEChHHHHHHHHHHHhhcCchHHHHHHHHhCccccc---------
Confidence 89999999 774 5899999999999999999999999999999999975322
Q ss_pred hHHHHHHHHHHHHHhCCCcchhhhhhhhhccCcccchHHHHHhhhhcccccEEecCCCc-HHHHHhhchhhhcccCCccc
Q psy2651 168 IDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP-PAAAKEMNDWVSNHTNDKIK 246 (342)
Q Consensus 168 ~~~v~~~~~~l~~~l~~~~~l~~an~lfv~~~~~l~~~F~~~~~~~y~a~v~~vdF~~~-~~a~~~IN~WV~~~T~g~I~ 246 (342)
+.. ..+..+|+||++++++++++|++.+++ |+++++.+||.+. +.+++.||+||+++|+ |+
T Consensus 68 ---~~~------------~~l~~an~l~v~~~~~l~~~F~~~~~~-~~~~v~~vdF~~~~~~a~~~IN~WV~~~T~--I~ 129 (364)
T PHA02660 68 ---IRK------------NHIHNITKVYVDSHLPIHSAFVASMND-MGIDVILADLANHAEPIRRSINEWVYEKTN--II 129 (364)
T ss_pred ---cch------------hhHHHHHHHHHhcCCchhHHHHHHHHH-cCCceEEeccccCHHHHHHHHHHHHHhccC--Cc
Confidence 110 135679999999999999999999987 8999999999764 5688999999999999 99
Q ss_pred cCCCCCCCCcccceeeeeeccccccccccCCCCCCcccCeeecCCCeEEEeeeeecceeeeEEEeCCCCeEEEEEeC-CC
Q psy2651 247 DLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GV 325 (342)
Q Consensus 247 ~ll~~~~i~~~t~lvLvNaiyFkg~W~~~F~~~~T~~~~F~~~~g~~~~VpMM~~~~~~f~y~~~~~l~~~vLELPY-~~ 325 (342)
+++ +++++|+++|+||+||||.|+++|++..|++++||.++|+.++||||++.+. |+|++++ ++++||||| ++
T Consensus 130 ~~~---~~~~~t~l~LvNaiyFkg~W~~~F~~~~T~~~~F~~~~~~~~~V~mM~~~~~-~~~~~~~--~~~vleLPY~~~ 203 (364)
T PHA02660 130 NFL---HYMPDTSILIINAVQFNGLWKYPFLRKKTTMDIFNIDKVSFKYVNMMTTKGI-FNAGRYH--QSNIIEIPYDNC 203 (364)
T ss_pred ccc---ccCCCchhhhhhhhhcccHhhcCCCcccCcccccccCCCceEeceeccccCe-eeeeecC--CCeEEECccCCC
Confidence 987 4778999999999999999999999999999999999999999999999998 9998864 589999999 74
Q ss_pred -cEEEEEeecCCCCCC
Q psy2651 326 -SISFIIKSQVVPEMG 340 (342)
Q Consensus 326 -~~SMlI~~~ILP~~g 340 (342)
.+||+| |||+++
T Consensus 204 ~~~sM~i---iLP~~~ 216 (364)
T PHA02660 204 SRSHMWI---VFPDAI 216 (364)
T ss_pred CceEEEE---EeeCCc
Confidence 579999 899974
No 25
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=56.48 E-value=12 Score=33.65 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHHHHccCChhHHHHHHHHcCCCCcccchhcccchhHHHHHHHHHHHHHhCCCc
Q psy2651 133 LGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIIDQLSKSP 186 (342)
Q Consensus 133 LamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~~~~~v~~~~~~l~~~l~~~~ 186 (342)
...|.+-++|.|-+||.+.|+++... |..+.+.++.++.-.+
T Consensus 143 ~eVL~lla~G~snkeIA~~L~iS~~T------------Vk~h~~~I~~KL~v~n 184 (207)
T PRK15411 143 SSMLRMWMAGQGTIQISDQMNIKAKT------------VSSHKGNIKRKIKTHN 184 (207)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCCHHH------------HHHHHHHHHHHhCCCc
Confidence 35677788899999999999987665 7788888888876544
No 26
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=34.46 E-value=55 Score=29.07 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHcCCCCcc
Q psy2651 126 PFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSE 158 (342)
Q Consensus 126 P~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~ 158 (342)
|-+|..+.|.||+.-+.-|..||.++||++...
T Consensus 25 nrtVG~iYgilyls~~Pmtl~Ei~E~lg~Sks~ 57 (177)
T COG1510 25 NRTVGQIYGILYLSRKPLTLDEIAEALGMSKSN 57 (177)
T ss_pred cchHHHHhhhheecCCCccHHHHHHHHCCCcch
Confidence 457889999999999999999999999998776
No 27
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=27.79 E-value=73 Score=28.45 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=30.8
Q ss_pred EChhhHHHHHHHHHccCChhHHHHHHHHcCCCCcc
Q psy2651 124 ISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSE 158 (342)
Q Consensus 124 ~SP~sI~~aLamL~~GA~G~T~~qL~~~Lgl~~~~ 158 (342)
++|++..-+|.++..|..|.|.+||.+.|+++...
T Consensus 159 ~~~Lt~r~Vl~~~~~g~~g~s~~eIa~~l~iS~~T 193 (225)
T PRK10046 159 IDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTT 193 (225)
T ss_pred CCHHHHHHHHHHHHcCCCCcCHHHHHHHhCccHHH
Confidence 56788888999999999999999999999987654
No 28
>PRK13870 transcriptional regulator TraR; Provisional
Probab=26.08 E-value=67 Score=29.56 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHHccCChhHHHHHHHHcCCCCcccchhcccchhHHHHHHHHHHHHHhCCCc
Q psy2651 132 VLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIIDQLSKSP 186 (342)
Q Consensus 132 aLamL~~GA~G~T~~qL~~~Lgl~~~~~~~~~~~~~~~~v~~~~~~l~~~l~~~~ 186 (342)
=+..|.--|.|+|..||...||++... |..++++...+|...+
T Consensus 178 E~E~L~W~A~GKT~~EIa~ILgISe~T------------V~~Hl~na~~KLga~n 220 (234)
T PRK13870 178 EATYLRWIAVGKTMEEIADVEGVKYNS------------VRVKLREAMKRFDVRS 220 (234)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHH------------HHHHHHHHHHHcCCCC
Confidence 345677889999999999999998665 8888888888876554
No 29
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.89 E-value=71 Score=26.61 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=18.8
Q ss_pred HHHhhchhhhcccCCccccCCCCCCCCcccceeeeee
Q psy2651 229 AAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINA 265 (342)
Q Consensus 229 a~~~IN~WV~~~T~g~I~~ll~~~~i~~~t~lvLvNa 265 (342)
+++.||+||.++--- +.-. |+--.-..+++.||.
T Consensus 13 srQTINrWvRkegW~--T~p~-pGVkGGrARLIhId~ 46 (122)
T PF07037_consen 13 SRQTINRWVRKEGWK--TEPK-PGVKGGRARLIHIDE 46 (122)
T ss_pred cHHHHHHHHHhcCce--eccC-CccccccceeeeecH
Confidence 678999999875311 1111 122223467777764
Done!