RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2651
(342 letters)
>gnl|CDD|215699 pfam00079, Serpin, Serpin (serine protease inhibitor). Structure
is a multi-domain fold containing a bundle of helices
and a beta sandwich.
Length = 369
Score = 227 bits (581), Expect = 6e-72
Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 11/219 (5%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHS--ETLLKDYKGIIDQLS 172
+ +N SP S+ L + GA G TAE ++ L E + + ++ ++ L+
Sbjct: 16 KESPDKNIFFSPLSISTALAMLYLGARGETAEQLLSVLGFPELDDEEIHEGFQSLLSSLN 75
Query: 173 KDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE 232
K KG LKIAN+++ K ++L P + + +E+ VDFS P A K+
Sbjct: 76 KPDKG--------YTLKIANRLFVDKGLKLKPDFLQLLKKYYGAEVESVDFSDPAEARKQ 127
Query: 233 MNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
+N WV TN KIKDL+ SLD T+LVL+NAI+FKGKW PF PE TK+ PF++D+
Sbjct: 128 INSWVEKKTNGKIKDLLPEGSLDPDTRLVLVNAIYFKGKWKTPFDPELTKEEPFHVDNGT 187
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFII 331
+V+VP+M + +F E+ E G K+LELPY ++S +I
Sbjct: 188 TVKVPMMSQEGTFRYAEDE-ELGCKVLELPYKGNLSMLI 225
>gnl|CDD|238101 cd00172, SERPIN, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 364
Score = 219 bits (560), Expect = 6e-69
Identities = 86/233 (36%), Positives = 129/233 (55%), Gaps = 15/233 (6%)
Query: 102 FSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRI--KHSET 159
F++ L + + EN + SP S+ L L GA G T E + K L + E
Sbjct: 5 FALDLYKQL---AKSEPDENVVFSPLSIASALALLYLGAGGETREQLRKVLGLPSLDDED 61
Query: 160 LLKDYKGIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELG 219
+ + +K ++ L KG ELK+AN+++ K + + + A +++E+
Sbjct: 62 VHQAFKSLLSSLKDSEKG--------VELKLANRLFVQKGLTVKEDFLDLAKKYYDAEVE 113
Query: 220 KVDFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPE 279
VDF+ P AAA ++N+WV TN KIKDL+ D+LD T+LVL+NAI+FKGKW PF PE
Sbjct: 114 SVDFANPEAAAAQINNWVEEKTNGKIKDLLSPDALDPDTRLVLVNAIYFKGKWKTPFDPE 173
Query: 280 ATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFII 331
T+ PFY+ + SVQVP+M+ F E+ E ++LELPY G +S +I
Sbjct: 174 LTRKRPFYVSEGESVQVPMMYQTGKFRYAEDE-ELDAQVLELPYKGSDLSMLI 225
>gnl|CDD|214513 smart00093, SERPIN, SERine Proteinase INhibitors.
Length = 359
Score = 185 bits (473), Expect = 6e-56
Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 10/229 (4%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ +N SP S+ L + S GA GSTA +++ L +ET D I Q +
Sbjct: 9 KESPDKNIFFSPVSISSALAMLSLGAKGSTATQILEVLGFNLTETSEAD----IHQGFQH 64
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-M 233
++++ ELK AN ++ K ++L ++ + +E+ VDFS AK+ +
Sbjct: 65 LLHLLNRPDSQLELKTANALFVDKSLKLKDSFLEDIKKLYGAEVQSVDFSDKAEEAKKQI 124
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
NDWV T KIKDL+ LD+ T+LVL+NAI+FKGKW PF PE T++ F++D+T +
Sbjct: 125 NDWVEKKTQGKIKDLLS--DLDSDTRLVLVNAIYFKGKWKTPFDPELTREEDFHVDETTT 182
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQVVPEMGRL 342
V+VP+M + Y E ++LELPY + S +I ++P+ G L
Sbjct: 183 VKVPMMSQTGRTFNYGHDEELNCQVLELPYKGNASMLI---ILPDEGGL 228
>gnl|CDD|239004 cd02049, bacterial_SERPIN, SERine Proteinase INhibitors (serpins),
prokaryotic subgroup. Little information about specific
functions is available for this subgroup, most likely
they are inhibitory members of the serpin superfamily.
In general, serpins exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin and
antichymotrypsin, function as serine protease
inhibitors.
Length = 364
Score = 154 bits (392), Expect = 5e-44
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 23/227 (10%)
Query: 102 FSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLL 161
F +L + + + ++N ISP S+ + L + GA G+T + M+K L
Sbjct: 8 FGFKLFSELN---KEDVEKNIFISPLSIALALSMTYNGADGTTRKEMLKALG-------- 56
Query: 162 KDYKGI-IDQLSKDYKGIIDQLS---KSPELKIANKIYFAKDIELNPAYQTQAVDNFNSE 217
I ++ L+ ++DQL+ K+ EL IAN I+ L P + D + +
Sbjct: 57 --LDNIDLEDLNSALATLMDQLNTHDKTVELIIANSIWIEPGFTLKPDFLQTIKDYYQAY 114
Query: 218 LGKVDFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFK 277
+ ++DF P AAA+E+N WV T KI ++ D +D + LINA++FKG W PF
Sbjct: 115 VLELDFQSP-AAAEEINRWVKEKTKGKIDKIV--DKIDPDDVMFLINAVYFKGDWQEPFD 171
Query: 278 PEATKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYG 324
++T + PFYL D ++ +VP M +F E GF+ + LPYG
Sbjct: 172 KQSTYEAPFYLPDGSTKEVPFMSRTGNFRYLE---TPGFQAVRLPYG 215
>gnl|CDD|238998 cd02043, plant_SERPIN, SERine Proteinase INhibitors (serpins),
plant specific subgroup. It has been suggested that
plant serpins play a role in defense against insect
predators. This subgroup corresponds to clade P of the
serpin superfamily. In general, serpins exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 381
Score = 146 bits (370), Expect = 8e-41
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 9/210 (4%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
AA K N I SP S++V L L + GA G T + ++ L ++ L I+D + D
Sbjct: 17 AAGKGSNVIFSPLSINVALSLVAAGARGETLDQLLSFLGSPSTDELHAVAASIVDLVLAD 76
Query: 175 YKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKEM 233
S P L AN ++ K + L P+++ A +++ +E VDF ++ +E+
Sbjct: 77 -----ASASGGPRLSFANGVWVDKSLSLKPSFKDLAANSYKAEARPVDFRTKAEEVRREV 131
Query: 234 NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNS 293
N WV TN IKD++ S+D+STKLVL NA++FKG W+ F TKD F+L D S
Sbjct: 132 NSWVEKATNGLIKDILPPGSVDSSTKLVLANALYFKGAWSSKFDASDTKDRDFHLLDGTS 191
Query: 294 VQVPLMFVKDSFYMYEEAGEDGFKMLELPY 323
V+VP M + Y+ A DGFK+L LPY
Sbjct: 192 VRVPFMSSEKDQYV---AAFDGFKVLRLPY 218
>gnl|CDD|239003 cd02048, neuroserpin, Neuroserpin is a inhibitory member of the
SERine Proteinase INhibitor (serpin) family that reacts
preferentially with tissue-type plasminogen activator
(tPA). It is located in neurons in regions of the brain
where tPA is also found, suggesting that neuroserpin is
the selective inhibitor of tPA in the central nervous
system (CNS). This subgroup corresponds to clade I of
the serpin superfamily.
Length = 388
Score = 141 bits (357), Expect = 7e-39
Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 22/228 (9%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLR---IKHSE--TLLKDYKGIID 169
A+ + EN I SP S + LG+ GA GS + + L +K+ E + LKD +I
Sbjct: 17 ASKEDENIIFSPLSTALALGMVELGAKGSALKEIRHSLGYDGLKNGEEFSFLKDLSSMIT 76
Query: 170 QLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAA 229
K+Y +AN +Y + + FN+ + VDFSQ A
Sbjct: 77 AKEKEYV-----------FNLANSLYLQNGFHVKEKFLQSNKKYFNAAVKLVDFSQVKAV 125
Query: 230 AKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLD 289
A+ +N WV NHTN+KIKD+ + T+LVL+NA++FKG W F+PE T+ F D
Sbjct: 126 AEHINKWVENHTNNKIKDMFSSRDFTPLTRLVLVNALYFKGNWKSQFRPENTRTFSFTKD 185
Query: 290 DTNSVQVPLMFVKDSFYMYE---EAGEDG--FKMLELPY-GVSISFII 331
D + VQ+P+M+ + FY E + E G +++LELPY G IS +I
Sbjct: 186 DESEVQIPMMYQQGEFYYGEFSDGSNEAGGIYQVLELPYEGDEISLMI 233
>gnl|CDD|239006 cd02051, PAI-1_nexin-1, Plasminogen activator inhibitor-1_like.
Plasminogen activator inhibitor-1 (PAI-1) is the
primary, fast-acting inhibitor of plasminogen
activators. It is often bound to vitronectin, an
abundant component of the extracellular matrix in many
tissues. Protease nexin-1 is a potent serpin able to
inhibit thrombin, plasmin, and plasminogen activators.
PAI-1 and nexin-1 are members of the serpin superfamily
and represent clade E. In general, SERine Proteinase
INhibitors (serpins) exhibit conformational polymorphism
shifting from native to cleaved, latent, delta, or
polymorphic forms. Many serpins, such as antitrypsin
and antichymotrypsin, function as serine protease
inhibitors which regulate blood coagulation cascades.
Non-inhibitory serpins perform many diverse functions
such as chaperoning proteins or transporting hormones.
Length = 377
Score = 141 bits (356), Expect = 9e-39
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 114 LAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSK 173
A +EN ++SP + VLG+ GA G T + + +R K G+ L K
Sbjct: 23 AQARPQENVVVSPHGIASVLGMLQLGADGKTKKQLQTVMRYK--------INGVAKALKK 74
Query: 174 DYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 233
K I+ + +K + AN ++ ++ + + + F E+ VDFS P AA +
Sbjct: 75 LNKAIVSKKNKD-IVTTANAVFAQSGFKMEVPFVPRNKEVFQCEVKSVDFSDPETAAFSI 133
Query: 234 NDWVSNHTNDKIKDLIKADSLDAS-TKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
NDWV N T I +L+ D D + T+LVL+NA++FKG W F+PE+TK F+ D
Sbjct: 134 NDWVKNETKGMIDNLLSPDLADDALTRLVLVNALYFKGLWKSRFQPESTKKRTFHAGDGK 193
Query: 293 SVQVPLMFVKDSFYMYEEAGEDG--FKMLELPY-GVSISFII 331
+ QVP++ F + +G + ++ELPY G SIS +I
Sbjct: 194 TYQVPMLAQLSVFRSGSASTPNGLWYNIIELPYHGESISMLI 235
>gnl|CDD|239013 cd02058, PAI-2, Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is
a serine protease inhibitor that belongs to the
ov-serpin branch of the serpin superfamily. It is is an
effective inhibitor of urinary plasminogen activator
(urokinase or uPA) and is involved in cell
differentiation, tissue growth and regeneration.
Length = 380
Score = 138 bits (350), Expect = 6e-38
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 15/222 (6%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
++ +N SP+S+ L + GA G+TA M K L+ G + + +
Sbjct: 19 SSPTKNIFFSPWSISSALAMVYLGAKGNTAAQMAKVLQFNEVG-------GNSEDIHSGF 71
Query: 176 KGIIDQLSKSPE---LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAA-K 231
+ ++ +++K LK AN++Y K + + +E VDF + A K
Sbjct: 72 QSLLSEINKPGTNYLLKSANRLYGEKTYPFLEKFLQLTQKYYQAEPQAVDFVEAAEQARK 131
Query: 232 EMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDT 291
E+N WV T KI++L+ S+D+ T+LVL+NAI+FKG W F E T++ PF L+
Sbjct: 132 EINSWVERQTEGKIQNLLPPGSVDSLTRLVLVNAIYFKGNWEEKFLKENTRERPFRLNKN 191
Query: 292 NSVQVPLMFVKDSFYM-YEEAGEDGFKMLELPY-GVSISFII 331
+ V +MF+K F + Y E E ++LELPY G +S I
Sbjct: 192 TTKPVQMMFLKKKFPITYIE--ELKAQVLELPYVGKELSMFI 231
>gnl|CDD|239014 cd02059, ovalbumin_like, The ovalbumin_like group of serpins
contains ovalbumin, the squamous cell carcinoma antigen
1 (SCCA1) and other closely related serpins of clade B
of the serpin superfamily. Ovalbumin, the major protein
component of avian egg white, is a non-inhibitory member
of SERine Proteinase INhibitorS (serpins). In contrast,
SCCA1 inhibits cysteine proteinases such as cathepsin S,
K, L, and papain, a so called cross-class serpin.
Length = 389
Score = 120 bits (303), Expect = 4e-31
Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKH---------SETLLKDYKGI 167
+K +N SP S+ LG+ GA TA + K L H + + + G
Sbjct: 20 HKNKNIFFSPLSISSALGMVLLGARDDTAAQIEKVLHFDHASGSGSSKPAASAQCNQSGG 79
Query: 168 IDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP 227
+ KD I++ + EL IAN++Y K + Y + ++L VDF
Sbjct: 80 VHSQFKDLLSQINKPNDDYELSIANRLYGEKTYPFHQEYLDCVEKLYRAKLEPVDFQNAA 139
Query: 228 AAAKEM-NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPF 286
A+++ N WV + TN KIK+L ++D+ST LVL+NAI+FKGKW F+ E T D PF
Sbjct: 140 EASRKKINSWVESQTNGKIKNLFGKGTIDSSTVLVLVNAIYFKGKWEKKFEKENTVDAPF 199
Query: 287 YLDDTNSVQVPLMFVKDSF---YMYEEAGEDGFKMLELPY-GVSISFII 331
L++ + V +M+ F + E K+LELPY G +S I+
Sbjct: 200 KLNENENKPVQMMYQIGKFKLASIEEP----KMKILELPYAGGGLSMIV 244
>gnl|CDD|239011 cd02056, alpha-1-antitrypsin_like, alpha-1-antitrypsin_like. This
family contains a variety of different members of clade
A of the serpin superfamily. They include the classical
serine proteinase inhibitors, alpha-1-antitrypsin and
alpha-1-antichymotrypsin, protein C inhibitor,
kallistatin, and noninhibitory serpins, like
corticosteroid and thyroxin binding globulins. In
general, SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones. Serpins are of
medical interest because mutants have been associated
with blood clotting disorders, emphysema, cirrhosis, and
dementia.
Length = 361
Score = 120 bits (302), Expect = 4e-31
Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 16/231 (6%)
Query: 115 AANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKD 174
+ + +N SP S+ L + S GA ST +++GL +E ++ I Q
Sbjct: 15 SESPSKNIFFSPVSISTALAMLSLGARSSTLAQILEGLGFNLTEISEEE----IHQG--- 67
Query: 175 YKGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK 231
++ ++ L++ +L + N ++ K ++ + + SE DF A K
Sbjct: 68 FQHLLHLLNQPDSGLQLNMGNALFLDKRLKPLDKFLEDVKHLYESEAFSTDFQDSAEAKK 127
Query: 232 EMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDT 291
++ND+V T+ KI DL+K LD+ T +VL+N I+FKGKW PF PE T++ F++D+
Sbjct: 128 QINDYVEKKTHGKIVDLVK--DLDSDTVMVLVNYIYFKGKWEKPFDPELTQEEDFFVDEK 185
Query: 292 NSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQVVPEMGRL 342
+V+VP+M + ++ E ++++PY + + V+P+ G++
Sbjct: 186 TTVKVPMMHQTGRYDYLHDS-ELSCTVVQMPYKGNATAFF---VLPDEGKM 232
>gnl|CDD|238999 cd02044, ov-serpin, ovalbumin family of serpins (ov-serpins).
Family of closely related proteins, whose members can be
secreted (ovalbumin), cytosolic (leukocyte elastase
inhibitor, LEI), or targeted to both compartments
(plasminogen activator inhibitor 2, PAI-2). This
subgroup corresponds to clade B of the serpin
superfamily. In general, serpins exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones. Serpins are of medical interest because
mutants can cause blood clotting disorders, emphysema,
cirrhosis, and dementia.
Length = 370
Score = 118 bits (296), Expect = 3e-30
Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 120 ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGII 179
+N SP ++ L + GA GSTA + K L + + + ++ ++ ++K
Sbjct: 23 QNVFFSPIAIMSSLAMVYLGAKGSTANQIGKVLHFDNVKDVHSSFQTLLSDINK------ 76
Query: 180 DQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVS 238
L+ LK+ N++Y K P + + + EL VDF + +N W+
Sbjct: 77 --LNSFYSLKLVNRLYGEKRYNFLPEFLSSTKKPYAKELETVDFKDKAEETRGQINSWIK 134
Query: 239 NHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPL 298
+ T KI++L+ +S+D+ T +V++NA +FKGKW F E TK+ PF ++ T + V +
Sbjct: 135 DQTKGKIENLLPENSVDSQTAMVVVNAAYFKGKWMKKFSEEETKESPFRVNKTETKPVQM 194
Query: 299 MFVKDSFYMYEEAGEDGFKMLELPYG 324
M+++ +F M K+LELP+
Sbjct: 195 MYMEATFNMGNIESL-KMKILELPFA 219
>gnl|CDD|227163 COG4826, COG4826, Serine protease inhibitor [Posttranslational
modification, protein turnover, chaperones].
Length = 410
Score = 118 bits (297), Expect = 3e-30
Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 13/208 (6%)
Query: 119 KENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKD-YKGIIDQLSKDYKG 177
EN + SP+S+ + + GA GST E M ++T+LK K + D+
Sbjct: 60 AENILFSPYSVSAAMAMCYEGAEGSTKEQMSNVFYFPINKTVLKVREKSLNDK------- 112
Query: 178 IIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDW 236
I+ + S EL+ AN ++ +D L Y + +++E+ +DF P A+++ +N W
Sbjct: 113 -INSPNDSYELETANALWVQEDYPLKENYVNNVRNYYDAEVTNLDFVNKPDASRDTINKW 171
Query: 237 VSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQV 296
V TN KIKDL+ D + T+LVL NAI+F GKW F + T FY V
Sbjct: 172 VEEKTNGKIKDLVPEDYIGPDTRLVLTNAIYFNGKWWPEFDKQMTGKRTFYPAKGEDKSV 231
Query: 297 PLMFVKDSFYMYEEAGEDGFKMLELPYG 324
+M + F E + K++ELPY
Sbjct: 232 DMMSICGDFNYGETS---KAKIVELPYK 256
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 114 bits (287), Expect = 6e-29
Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 18/236 (7%)
Query: 113 NLAANK--KENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQ 170
+LA +K EN +SP S+ + GA +T E +M+ + +T+ + DQ
Sbjct: 19 HLADSKSNDENIFLSPLSISTAFAMTKLGACNNTLEQLME---VFQFDTISEKTS---DQ 72
Query: 171 L----SKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQP 226
+ +K + + +KS EL AN+++ K + N YQ + + ++L +DF +
Sbjct: 73 VHFFFAKLNCRLYRKANKSSELISANRLFGDKSLTFNETYQDISEIVYGAKLWPLDFKEK 132
Query: 227 PAAAKE-MNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGP 285
P ++ +N+W++N T ++I D+I ++D +T LVL+NAI+FKG W F E T+
Sbjct: 133 PELSRITINEWIANKTENRITDVIPEGAIDTNTVLVLVNAIYFKGLWKSKFDKENTRKDL 192
Query: 286 FYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPY-GVSISFIIKSQVVPEMG 340
F+ VP+M+ ++S + Y + ED ++LELPY G I+ ++ ++P+ G
Sbjct: 193 FHKAPGEKCPVPMMY-QESKFRYAKIPEDKVQVLELPYKGDDITMVL---ILPKEG 244
>gnl|CDD|239010 cd02055, PZI, Protein Z-dependent protease inhibitor (ZPI) is a
member of the serpin superfamily of proteinase
inhibitors (clade A10). ZPI inhibits coagulation factor
Xa , dependent on protein Z (PZ), a vitamin K-dependent
plasma protein. ZPI also inhibits factor XIa in a
process that does not require PZ. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms.
Length = 365
Score = 95.8 bits (238), Expect = 3e-22
Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 20/225 (8%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYK-GIIDQLSKDYKGII 179
N I SPF + + + A G T + K L + H+ LKD G++ L +KG+
Sbjct: 24 NIIFSPFGMSLAMAGLLLAAEGETERQIAKALHL-HA---LKDRDPGLLPAL---FKGLK 76
Query: 180 DQLSKSPELKIANKI--YFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWV 237
D +S++ EL I + KD ++ A+ + F+ E +DF A +N +
Sbjct: 77 DNISRNEELGFTQGIFAFIHKDFDVKEAFFNLSKQYFDMECLCMDFQNASQAKFLINHNI 136
Query: 238 SNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVP 297
T KI +L D +D +KL+L++ I FKGKW PF PE T+ F++D S++VP
Sbjct: 137 KKETKGKIPELF--DEIDPESKLILLDYIFFKGKWLTPFDPEFTEIDTFHIDKYKSIKVP 194
Query: 298 LMFVKDSFYMYEEAGEDGFK--MLELPYGVSISFIIKSQVVPEMG 340
+MF D F ++ F+ +++LPY + +I V+ E G
Sbjct: 195 MMFGADKF---ASTFDENFRCHVIKLPYKGKATMLI---VIMEKG 233
>gnl|CDD|239005 cd02050, C1_inh, C1 inhibitor (C1-Inh) is a protease inhibitor of
the serpin family. It plays a pivotal role in regulating
the activation of the classical complement pathway and
of the contact system, via regulating bradykinin
formation, inhibiting factor XII and kallikrein of the
contact system, and via acting on factor XI in the
coagulation cascade. This subgroup corresponds to clade
G of the serpin superfamily.
Length = 352
Score = 86.4 bits (214), Expect = 5e-19
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 114 LAANKK--ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQL 171
L+ + K N + SP S+ ++L GA G T + L H +
Sbjct: 13 LSESAKPDTNLLFSPVSIALLLSHLLLGARGKTQRRLESILSYPHDFACVHSA------- 65
Query: 172 SKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK 231
+ +L L A++I+ D+ L ++ ++ + + + S
Sbjct: 66 -------LKKLKNKLGLLSASQIFHHPDLHLRESFTNESWQFYKAR--PRELSNNSELNL 116
Query: 232 EM-NDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDD 290
EM N WV+ TN+KI L+ DSL + T+LVL+NA++F+ +W F + T PF +
Sbjct: 117 EMINSWVAKATNNKIPRLL--DSLPSETRLVLLNAVYFQAQWKKKFDTKHTVLLPFKRNG 174
Query: 291 TNSVQVPLMFVK 302
+ V+VP+M+ K
Sbjct: 175 -DPVKVPVMYSK 185
>gnl|CDD|239008 cd02053, alpha2AP, Alpha2-antiplasmin (alpha2AP) is the primary
inhibitor of plasmin, a proteinase that digests fibrin,
the main component of blood clots. Alpha2-Antiplasmin
forms an inactive 1 : 1 stoichiometric complex with
plasmin. It also rapidly crosslinks to fibrin during
blood clotting by activated coagulation factor XIII, and
as a consequence fibrin becomes more resistant to
fibrinolysis. Therefore alpha2AP is important in
modulating the effectiveness and persistence of fibrin
with respect to its susceptibility to digestion and
removal by plasmin. This subgroup corresponds to clade
F2 of the serpin superfamily.
Length = 351
Score = 82.9 bits (205), Expect = 7e-18
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 18/198 (9%)
Query: 102 FSIQLSTLVEWNLAANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLL 161
FS L + V + K N I+SP S+ + L + GA T + ++K L H+E+L
Sbjct: 8 FSTDLLSEVA---QESTKPNLILSPLSIALALSHLALGAQNETEQRLLKTL---HAESL- 60
Query: 162 KDYKGIIDQLSKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKV 221
++ +L +D L++A ++Y K E+ ++ ++ + ++ +
Sbjct: 61 PCLHHLLSRLRQDLGPGA--------LRLATRMYLQKGFEIKESFLEESEKLYGAKPVSL 112
Query: 222 DFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEAT 281
++ A +N WV T +I + + L T L+L+NAIHFKG W F P T
Sbjct: 113 TGTKEDDLA-NINKWVKEATEGQIPNFLS--DLPHDTVLLLLNAIHFKGFWRNKFDPSLT 169
Query: 282 KDGPFYLDDTNSVQVPLM 299
+ F+LDD +V V +M
Sbjct: 170 QRDAFHLDDDFTVSVEMM 187
>gnl|CDD|239007 cd02052, PEDF, Pigment epithelium-derived factor (PEDF)_like. PEDF
is non-inhibitory member of the Serpin superfamily. It
exhibits neurotrophic, neuroprotective and
antiangiogenic properties and is widely expressed in the
developing and adult nervous systems. This subgroup
corresponds to clade F1 of the serpin superfamily.
Length = 374
Score = 80.7 bits (199), Expect = 6e-17
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 117 NKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYK 176
+ N +SP S+ L S GA T + + L LL D +L YK
Sbjct: 34 DPTANVFLSPLSIATALSQLSLGAGERTESQIHRALYYD----LLND-----PELHDTYK 84
Query: 177 GIIDQLSKSPE-LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
++ L+ + LK A++I + + L + Q V+ E ++ + +E+ND
Sbjct: 85 DLLASLTAPAKGLKSASRILLERKLRLRLEFVNQ-VEKSYGERPRI-LAGNALDLQEIND 142
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
WV T K+ +K + + ++L+ + +FKG+W F T F+LD+ +V
Sbjct: 143 WVQQQTGGKVDRFVK--EIPRNVSILLLGSAYFKGQWITKFDKRNTVLTDFHLDEQRTVV 200
Query: 296 VPLMFVKDSFYMYEEAGEDGFKMLELPY--GVSISFIIKSQVVPEM 339
VP+M ++ Y + K+ +LP GVSI F + +V +
Sbjct: 201 VPMMSDPNAPVRYGLDSDLNCKIAQLPLTGGVSIMFFLPDKVTQNL 246
>gnl|CDD|239012 cd02057, maspin_like, Maspin (mammary serine proteinase inhibitor),
a member of the serpin superfamily, with a multitude of
effects on cells and tissues at an assortment of
developmental stages. Maspin has tumor suppressing
activity against breast and prostate cancer. In general,
SERine Proteinase INhibitors (serpins) exhibit
conformational polymorphism shifting from native to
cleaved, latent, delta, or polymorphic forms. Many
serpins, such as antitrypsin and antichymotrypsin,
function as serine protease inhibitors which regulate
blood coagulation cascades. Non-inhibitory serpins
perform many diverse functions such as chaperoning
proteins or transporting hormones.
Length = 372
Score = 79.6 bits (196), Expect = 1e-16
Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 10/204 (4%)
Query: 121 NAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDYKGIID 180
N + SP L L LA GA G TA + K L ++ +KD ++ D +
Sbjct: 24 NVVFSPICLSTSLALAQVGAKGDTANEIGKVLHFEN----VKDVPFGFQTVTSD----VS 75
Query: 181 QLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EMNDWVSN 239
+LS LK+ ++Y K + L+ + + EL VDF + ++N+ +
Sbjct: 76 KLSSFYSLKLIKRLYVDKSLNLSTDFINSTKRPYPKELETVDFKDKLEETRGQINNSIKE 135
Query: 240 HTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLM 299
T+ ++++ +S++ TK++++NA +F G W F TK+ PF ++ T + V +M
Sbjct: 136 LTDGHFENILNENSVNDQTKILVVNAAYFVGNWMKKFPESETKECPFRVNKTETKPVQMM 195
Query: 300 FVKDSFYMYEEAGEDGFKMLELPY 323
++ +F M E K+LELP+
Sbjct: 196 NLEATFSM-GYIDELNTKILELPF 218
>gnl|CDD|239002 cd02047, HCII, Heparin cofactor II (HCII) inhibits thrombin, the
final protease of the coagulation cascade. HCII is
allosterically activated by binding to cell surface
glycosaminoglycans (GAGs). The specificity of HCII for
thrombin is conferred by a highly acidic hirudin-like
N-terminal tail, which becomes available after GAG
binding for interaction with the anion-binding exosite I
of thrombin. This subgroup corresponds to clade D of the
serpin superfamily.
Length = 436
Score = 71.8 bits (176), Expect = 7e-14
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 12/226 (5%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
N +N +++P + +G+ S G G T E ++ L K Y+ I + +
Sbjct: 84 VNTSDNILLAPVGISTAMGMISLGLKGQTQEQVLSTLGFKDFVNASSKYE--ITTVHNLF 141
Query: 176 KGIIDQLSKSP---ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE 232
+ + +L + L+ N +Y KD + ++ + +E DFS P K
Sbjct: 142 RKLTHRLFRRNFGYTLRSVNDLYIKKDFPILLDFKNNVKTYYFAEAQIADFSDPAFITK- 200
Query: 233 MNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTN 292
N+ + T IK+ ++ ++D +T ++++N I+FKG W F E T + F L++
Sbjct: 201 TNNRIQKLTKGLIKEALE--NVDPATLMMILNCIYFKGTWENKFPVEMTHNRNFRLNEKE 258
Query: 293 SVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQVVPE 338
V+VP+M K +F + E +L+LPY +IS +I VVP
Sbjct: 259 VVKVPMMQTKGNFLAAADP-ELDCDILQLPYVGNISMLI---VVPH 300
>gnl|CDD|239001 cd02046, hsp47, Heat shock protein 47 (Hsp47), also called
colligin, because of its collagen binding ability, is a
chaperone specific for procollagen. It has been shown to
be essential for collagen biosynthesis, but its exact
function is still unclear. Hsp47 is a non-inhibitory
member of the SERPIN superfamily and corresponds to
clade H.
Length = 366
Score = 68.4 bits (167), Expect = 8e-13
Identities = 52/229 (22%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 113 NLAANKK-ENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQL 171
+A +K EN ++SP + LGL S G STA L ++ L ++ + L
Sbjct: 17 AMAKDKGVENILLSPVVVASSLGLVSMGGKASTASQAKAVLS---ADKLKDEH--VHTGL 71
Query: 172 SKDYKGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK 231
S+ + + +++ KI N++Y + + + ++N E K++F +A
Sbjct: 72 SELLNEVSNSTARNVTWKIGNRLYGPSSVSFADDFVKNSKKHYNYEHSKINFRDKRSALN 131
Query: 232 EMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDT 291
+N+W + T+ K+ ++ K ++ + +++NA+ FK W F + + F + +
Sbjct: 132 SINEWAAQTTDGKLPEVTK--DVEKTDGALIVNAMFFKPHWDEKFHHKMVDNRGFMVTRS 189
Query: 292 NSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSIS---FIIKSQVVP 337
+V VP+M + Y++ E+ +++E+P +S FI+ V P
Sbjct: 190 YTVSVPMMHRTGLYGYYDDE-ENKLQIVEMPLAHKLSSMIFIMPYHVEP 237
>gnl|CDD|239009 cd02054, angiotensinogen, Angiotensinogen is part of the
renin-angiotensin system (RAS), which plays an important
role in blood pressure regulation, renal haemodynamics,
fluid and electrolyte homeostasis. It is also involved
in normal and abnormal growth processes. The growth
promoting actions of angiotensin have been shown in a
variety of cells and tissues. This subgroup represents
clade A8 of the serpin superfamily. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms. Many serpins, such as
antitrypsin and antichymotrypsin, function as serine
protease inhibitors which regulate blood coagulation
cascades. Non-inhibitory serpins perform many diverse
functions such as chaperoning proteins or transporting
hormones.
Length = 372
Score = 66.4 bits (162), Expect = 4e-12
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 221 VDFSQPPAAAKEMNDWVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEA 280
VDF++P A +++N++V ++ K+K +K L + L+ ++HF+G W + E
Sbjct: 130 VDFTEPDVAEEKINNFVQATSDGKVKSSLK--GLSPDSDLLFATSVHFQGNWKTASQLEE 187
Query: 281 TKDGPFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFII 331
++ F++D+ SV VP++ +F + ++ F + +LP ++
Sbjct: 188 PQE--FWVDNNTSVSVPMLSHTGTFKYLSDIQDN-FSITQLPLSKRACLLL 235
>gnl|CDD|165258 PHA02948, PHA02948, serine protease inhibitor-like protein;
Provisional.
Length = 373
Score = 41.2 bits (96), Expect = 5e-04
Identities = 46/209 (22%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 116 ANKKENAIISPFSLHVVLGLASFGAAGSTAEAMMKGLRIKHSETLLKDYKGIIDQLSKDY 175
N+ +N + SPF + ++ A+G+T ++K + ++ + L + +I L+K
Sbjct: 35 GNEDDNIVFSPFGYSFSMFMSLLPASGNTRVELLKTMDLRKRD-LGPAFTELISGLAKL- 92
Query: 176 KGIIDQLSKSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMND 235
+ SK + + + + + P+Y Q F L +++F + ++N
Sbjct: 93 -----KTSKYTYTDLTYQSFVDNTVCIKPSYYQQ-YHRFG--LYRLNFRRDAV--NKINS 142
Query: 236 WVSNHTNDKIKDLIKADSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQ 295
V + + +++ + LD +T +IN I+FKG W PF T + F + +
Sbjct: 143 IVERRSG--MSNVVDSTMLDNNTLWAIINTIYFKGTWQYPFDITKTHNASF-TNKYGTKT 199
Query: 296 VPLMFVKDSFYMYEEAGED-GFKMLELPY 323
VP+M V +D + M+ LPY
Sbjct: 200 VPMMNVVTKLQGNTITIDDEEYDMVRLPY 228
>gnl|CDD|165039 PHA02660, PHA02660, serpin-like protein; Provisional.
Length = 364
Score = 37.7 bits (87), Expect = 0.006
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 193 KIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKEMNDWVSNHTNDKIKDLIKA 251
K+Y + ++ A+ ++++ ++ D + + +N+WV TN +I
Sbjct: 78 KVYVDSHLPIHSAFVA-SMNDMGIDVILADLANHAEPIRRSINEWVYEKTN-----IINF 131
Query: 252 DSLDASTKLVLINAIHFKGKWTVPFKPEATKDGPFYLDDTNSVQVPLMFVKDSFYM--YE 309
T +++INA+ F G W PF + T F +D + V +M K F Y
Sbjct: 132 LHYMPDTSILIINAVQFNGLWKYPFLRKKTTMDIFNIDKVSFKYVNMMTTKGIFNAGRYH 191
Query: 310 EAGEDGFKMLELPYG 324
++ ++E+PY
Sbjct: 192 QS-----NIIEIPYD 201
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 29.8 bits (67), Expect = 2.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 160 LLKDYKGIIDQLSKDYKG 177
LLK YK IDQL + KG
Sbjct: 640 LLKYYKDCIDQLYSEAKG 657
>gnl|CDD|227213 COG4876, COG4876, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 138
Score = 28.1 bits (62), Expect = 3.8
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 227 PAAAKEMNDWVSNHTNDKIKDLIKAD 252
P A + +W N + ++IK L + +
Sbjct: 42 PIATSKAKEWYRNLSKEEIKALEEEN 67
>gnl|CDD|225669 COG3127, COG3127, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, permease component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 829
Score = 28.9 bits (65), Expect = 4.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 126 PFSLHVVLGLASFGAAGSTAEAMMKGL 152
F + L +A+ A GS ++ M KGL
Sbjct: 23 IFLAALALAVAAIAALGSLSDRMEKGL 49
>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 350
Score = 28.4 bits (64), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 135 LASFGAAGSTAEAMMKGLRIKHSETLL 161
LA+F + STAE M++ + ET+L
Sbjct: 156 LATFPCSYSTAENMLERAGVGAGETVL 182
>gnl|CDD|235099 PRK03011, PRK03011, butyrate kinase; Provisional.
Length = 358
Score = 28.2 bits (64), Expect = 6.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 154 IKHSETLLKDYKGIIDQLSKDYKGIIDQLSK 184
++HS L+ +K IIDQ + I+D L +
Sbjct: 30 LRHSAEELEKFKTIIDQYEFRKQAILDFLKE 60
>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
Validated.
Length = 366
Score = 28.1 bits (62), Expect = 7.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 285 PFYLDDTNSVQVPLMFVKDSFYMYEEAGEDGFKMLELPYGVSISFIIKSQ 334
PFY TN + +P V++ +YE GF + P GV I+ + Q
Sbjct: 295 PFYQSQTNFIFLP---VENGGEIYEACAHAGFIIRPFPNGVRITVGTREQ 341
>gnl|CDD|213344 cd12205, RasGAP_plexin, Ras-GTPase Activating Domain of plexins.
Plexins form a conserved family of transmembrane
receptors for semaphorins and may be the ancestors of
semaphorins. Ligand binding activates signal
transduction pathways controlling axon guidance in the
nervous system and other developmental processes,
including cell migration and morphogenesis, immune
function, and tumor progression. Plexins are divided
into four types (A-D) according to sequence similarity.
In vertebrates, type A Plexins serve as the co-receptors
for neuropilins to mediate the signaling of class 3
semaphorins except Sema3E, which signals through Plexin
D1. Plexins serve as direct receptors for several other
members of the semaphorin family: class 6 semaphorins
signal through type A plexins and class 4 semaphorins
through type B. Plexin C1 serves as the receptor of
Sema7A and plays regulation roles in both immune and
nervous systems. Plexins contain a C-terminal RasGAP
domain, which functions as an enhancer of the hydrolysis
of GTP that is bound to Ras-GTPases. Plexins display GAP
activity towards the Ras homolog Rap. Other proteins
having a RasGAP domain include p120GAP, IQGAP,
Rab5-activating protein 6, and Neurofibromin. Although
the Rho (Ras homolog) GTPases are most closely related
to members of the Ras family, RhoGAP and RasGAP show no
sequence homology at their amino acid level. RasGTPases
function as molecular switches in a large number of of
signaling pathways. When bound to GTP they are in the on
state and when bound to GDP they are in the off state.
The RasGAP domain speeds up the hydrolysis of GTP in
Ras-like proteins acting as a negative regulator.
Length = 382
Score = 28.0 bits (63), Expect = 7.9
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 181 QLSK-SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 239
+L K SP +NK+ FAKDI P Y+ + V NF ++ + PP + +EMN +++
Sbjct: 282 KLGKDSP----SNKLLFAKDI---PRYR-EMVANFYRDIS----NLPPVSDEEMNSYLAE 329
Query: 240 HTNDKIKDLIKADSL 254
+ + +L
Sbjct: 330 LSESHSGEFNTNVAL 344
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,141,023
Number of extensions: 1632306
Number of successful extensions: 1312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1262
Number of HSP's successfully gapped: 44
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)