Query psy2654
Match_columns 1949
No_of_seqs 415 out of 2252
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:48:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12774 AAA_6: Hydrolytic ATP 100.0 1.6E-58 3.5E-63 516.4 14.9 231 1400-1682 1-231 (231)
2 PF12774 AAA_6: Hydrolytic ATP 100.0 1.1E-55 2.4E-60 493.7 6.9 228 1013-1240 1-228 (231)
3 COG5271 MDN1 AAA ATPase contai 100.0 7.9E-52 1.7E-56 508.1 29.1 776 1021-1909 126-1033(4600)
4 COG5271 MDN1 AAA ATPase contai 100.0 7.9E-49 1.7E-53 481.9 35.7 808 934-1909 776-1689(4600)
5 PF08393 DHC_N2: Dynein heavy 100.0 1.3E-46 2.9E-51 473.2 10.2 388 295-735 3-401 (408)
6 COG5245 DYN1 Dynein, heavy cha 100.0 5E-41 1.1E-45 413.9 35.3 1082 487-1909 565-1966(3164)
7 PF08393 DHC_N2: Dynein heavy 100.0 2.1E-33 4.5E-38 353.6 12.7 401 749-1264 2-407 (408)
8 KOG1808|consensus 100.0 3.7E-29 8E-34 333.9 14.3 475 1408-1908 43-584 (1856)
9 KOG1808|consensus 100.0 1.4E-27 2.9E-32 319.0 25.1 692 1024-1909 45-874 (1856)
10 COG5245 DYN1 Dynein, heavy cha 99.9 7.7E-26 1.7E-30 281.0 28.8 407 1389-1923 905-1312(3164)
11 TIGR02640 gas_vesic_GvpN gas v 99.8 1.3E-18 2.8E-23 203.2 18.4 235 1411-1675 1-237 (262)
12 TIGR01650 PD_CobS cobaltochela 99.8 2.9E-18 6.3E-23 198.3 17.5 259 1408-1720 44-317 (327)
13 PHA02244 ATPase-like protein 99.5 9.2E-14 2E-18 162.0 17.6 197 1414-1673 102-306 (383)
14 KOG0733|consensus 99.5 3E-13 6.6E-18 160.3 21.7 387 1428-1909 220-678 (802)
15 PF07728 AAA_5: AAA domain (dy 99.5 4.3E-14 9.3E-19 149.6 5.2 133 1433-1610 1-139 (139)
16 KOG0730|consensus 99.4 1.9E-12 4.2E-17 156.9 17.5 144 1746-1915 448-607 (693)
17 PF07728 AAA_5: AAA domain (dy 99.4 4E-13 8.6E-18 142.2 6.0 125 1766-1902 1-139 (139)
18 KOG0736|consensus 99.4 2.1E-12 4.7E-17 157.3 12.8 372 1434-1911 434-844 (953)
19 TIGR02639 ClpA ATP-dependent C 99.4 2.7E-11 5.8E-16 162.1 22.9 363 1423-1891 193-603 (731)
20 PF07726 AAA_3: ATPase family 99.3 1.1E-12 2.3E-17 128.9 6.6 127 1434-1610 2-129 (131)
21 PRK11034 clpA ATP-dependent Cl 99.3 5.5E-11 1.2E-15 155.8 23.7 101 1766-1878 490-596 (758)
22 TIGR02640 gas_vesic_GvpN gas v 99.3 3.8E-12 8.3E-17 149.0 8.3 183 1024-1212 1-216 (262)
23 COG0714 MoxR-like ATPases [Gen 99.2 2.5E-11 5.4E-16 147.7 12.5 193 1417-1653 29-227 (329)
24 PHA02244 ATPase-like protein 99.2 3.5E-11 7.5E-16 140.7 12.9 147 1747-1910 102-261 (383)
25 TIGR03345 VI_ClpV1 type VI sec 99.2 9.6E-10 2.1E-14 147.6 25.0 132 1767-1909 599-766 (852)
26 TIGR01650 PD_CobS cobaltochela 99.2 1E-10 2.2E-15 136.1 11.6 151 1743-1908 46-218 (327)
27 TIGR01243 CDC48 AAA family ATP 99.2 7.6E-10 1.6E-14 149.1 21.8 69 1429-1497 210-285 (733)
28 PF12775 AAA_7: P-loop contain 99.1 2.6E-10 5.7E-15 132.9 12.6 211 1408-1673 10-250 (272)
29 CHL00095 clpC Clp protease ATP 99.1 3.8E-09 8.1E-14 143.3 24.2 127 1743-1879 510-651 (821)
30 PRK10865 protein disaggregatio 99.0 8.8E-09 1.9E-13 139.1 23.1 154 1744-1909 570-765 (857)
31 TIGR02639 ClpA ATP-dependent C 99.0 5.2E-09 1.1E-13 140.4 20.3 126 1045-1189 204-355 (731)
32 PRK11034 clpA ATP-dependent Cl 99.0 3.1E-09 6.8E-14 139.5 17.7 43 1434-1476 491-533 (758)
33 KOG0735|consensus 98.9 5.4E-09 1.2E-13 126.8 13.8 176 1688-1899 619-821 (952)
34 TIGR03346 chaperone_ClpB ATP-d 98.9 4.5E-08 9.8E-13 133.2 24.0 137 1743-1891 566-717 (852)
35 KOG0736|consensus 98.9 7.4E-09 1.6E-13 127.2 11.4 92 1424-1515 698-805 (953)
36 KOG0730|consensus 98.9 5.3E-08 1.1E-12 119.1 18.2 71 1428-1498 465-542 (693)
37 TIGR01243 CDC48 AAA family ATP 98.7 1E-07 2.2E-12 128.8 17.1 68 1430-1497 486-560 (733)
38 CHL00095 clpC Clp protease ATP 98.7 7E-07 1.5E-11 121.5 22.3 42 1435-1476 543-587 (821)
39 TIGR03346 chaperone_ClpB ATP-d 98.6 8.3E-07 1.8E-11 121.0 20.1 127 1045-1188 195-345 (852)
40 TIGR03345 VI_ClpV1 type VI sec 98.6 5.2E-07 1.1E-11 121.7 17.3 42 1435-1476 600-644 (852)
41 KOG0741|consensus 98.6 2.8E-07 6.1E-12 108.6 12.3 74 1427-1500 252-341 (744)
42 KOG0733|consensus 98.5 4.3E-07 9.3E-12 109.2 12.5 102 1427-1528 541-656 (802)
43 PRK11331 5-methylcytosine-spec 98.5 8.5E-07 1.8E-11 107.5 14.8 199 1418-1651 181-393 (459)
44 PRK10865 protein disaggregatio 98.5 3.6E-06 7.8E-11 114.2 22.2 128 1044-1188 199-350 (857)
45 PRK11331 5-methylcytosine-spec 98.5 6.8E-07 1.5E-11 108.3 13.5 154 1755-1910 185-358 (459)
46 COG0542 clpA ATP-binding subun 98.5 4.5E-06 9.8E-11 107.2 21.2 113 1767-1891 524-643 (786)
47 PF07726 AAA_3: ATPase family 98.4 2.3E-07 5E-12 91.9 4.1 113 1049-1171 4-129 (131)
48 KOG0735|consensus 98.3 1.7E-06 3.7E-11 105.8 8.9 86 1428-1513 698-797 (952)
49 COG0714 MoxR-like ATPases [Gen 98.3 2.4E-06 5.3E-11 104.3 9.9 155 1030-1193 29-203 (329)
50 CHL00195 ycf46 Ycf46; Provisio 98.2 8E-05 1.7E-09 93.8 21.5 68 1429-1496 257-331 (489)
51 CHL00195 ycf46 Ycf46; Provisio 98.1 0.00018 3.9E-09 90.7 22.5 123 1762-1911 257-393 (489)
52 PRK13531 regulatory ATPase Rav 98.1 8.1E-06 1.7E-10 100.0 8.7 51 1418-1468 26-78 (498)
53 PF05496 RuvB_N: Holliday junc 98.1 1.1E-05 2.3E-10 88.4 8.6 69 1434-1503 53-121 (233)
54 KOG3595|consensus 98.1 9.9E-05 2.1E-09 105.4 20.5 430 1409-1911 105-634 (1395)
55 PF00004 AAA: ATPase family as 98.0 3.4E-06 7.3E-11 88.5 3.8 65 1435-1499 2-74 (132)
56 TIGR02974 phageshock_pspF psp 98.0 5.7E-05 1.2E-09 91.4 14.2 92 1414-1506 5-116 (329)
57 PRK00080 ruvB Holliday junctio 98.0 0.00011 2.5E-09 89.7 16.8 69 1433-1502 53-121 (328)
58 PF12775 AAA_7: P-loop contain 98.0 8.3E-06 1.8E-10 95.5 6.4 206 1021-1232 10-248 (272)
59 PRK11608 pspF phage shock prot 98.0 6.9E-05 1.5E-09 90.9 14.2 148 1413-1622 11-181 (326)
60 cd00009 AAA The AAA+ (ATPases 98.0 2.4E-05 5.1E-10 83.8 9.2 82 1418-1499 4-100 (151)
61 PRK06851 hypothetical protein; 98.0 0.00011 2.3E-09 88.4 15.3 34 1434-1467 33-69 (367)
62 COG0542 clpA ATP-binding subun 97.9 3.7E-05 8E-10 99.1 10.6 89 1418-1506 497-616 (786)
63 PRK03992 proteasome-activating 97.9 1.4E-05 3.1E-10 99.2 6.8 68 1429-1496 163-237 (389)
64 smart00350 MCM minichromosome 97.9 0.0001 2.2E-09 95.0 14.8 53 1576-1628 334-400 (509)
65 TIGR00763 lon ATP-dependent pr 97.9 3.4E-05 7.3E-10 104.6 10.3 65 1434-1498 350-429 (775)
66 PRK04195 replication factor C 97.9 6.2E-05 1.3E-09 96.8 11.8 67 1431-1497 39-112 (482)
67 COG0464 SpoVK ATPases of the A 97.9 8.1E-05 1.8E-09 96.7 12.9 137 1750-1912 260-412 (494)
68 TIGR00635 ruvB Holliday juncti 97.8 7.9E-05 1.7E-09 90.6 10.6 68 1434-1502 33-100 (305)
69 PF05496 RuvB_N: Holliday junc 97.8 0.00015 3.3E-09 79.5 11.3 137 1747-1908 29-177 (233)
70 TIGR01241 FtsH_fam ATP-depende 97.8 0.00011 2.3E-09 95.0 11.7 68 1431-1498 88-162 (495)
71 PRK10787 DNA-binding ATP-depen 97.8 8.5E-05 1.8E-09 99.4 10.9 66 1434-1499 352-432 (784)
72 PLN03025 replication factor C 97.8 0.00014 3.1E-09 88.5 11.9 77 1423-1499 24-115 (319)
73 PF07724 AAA_2: AAA domain (Cd 97.7 1.8E-05 4E-10 85.7 3.6 72 1435-1507 7-103 (171)
74 PF00158 Sigma54_activat: Sigm 97.7 6.7E-05 1.5E-09 81.1 7.7 92 1414-1506 5-116 (168)
75 TIGR02881 spore_V_K stage V sp 97.7 0.00014 3.1E-09 85.7 10.9 63 1433-1497 44-119 (261)
76 COG1239 ChlI Mg-chelatase subu 97.7 0.0002 4.4E-09 85.0 11.5 202 1427-1645 33-247 (423)
77 PTZ00454 26S protease regulato 97.7 7.8E-05 1.7E-09 92.0 8.5 68 1429-1496 177-251 (398)
78 PRK13407 bchI magnesium chelat 97.7 0.00013 2.8E-09 87.4 10.0 75 1536-1620 129-204 (334)
79 PHA02544 44 clamp loader, smal 97.7 7.5E-05 1.6E-09 91.3 8.1 59 1436-1495 48-112 (316)
80 TIGR00382 clpX endopeptidase C 97.6 0.00044 9.5E-09 85.0 13.8 65 1433-1497 118-195 (413)
81 PF00004 AAA: ATPase family as 97.6 0.00011 2.4E-09 76.8 7.6 114 1767-1906 1-128 (132)
82 CHL00176 ftsH cell division pr 97.6 7.1E-05 1.5E-09 97.5 6.7 68 1430-1497 215-289 (638)
83 PRK15424 propionate catabolism 97.6 0.0003 6.4E-09 89.7 11.8 90 1414-1504 225-343 (538)
84 PRK14961 DNA polymerase III su 97.6 0.00031 6.6E-09 86.9 11.4 142 1762-1922 36-191 (363)
85 PRK14962 DNA polymerase III su 97.6 0.00032 6.9E-09 88.6 11.6 37 1421-1457 23-62 (472)
86 PRK07003 DNA polymerase III su 97.6 0.0019 4.1E-08 83.0 18.2 167 1419-1634 23-197 (830)
87 PTZ00112 origin recognition co 97.6 0.0025 5.5E-08 82.0 19.0 55 1418-1472 765-832 (1164)
88 PLN03025 replication factor C 97.6 0.00031 6.8E-09 85.4 11.1 119 1765-1911 35-159 (319)
89 KOG0744|consensus 97.6 8.3E-05 1.8E-09 83.6 5.3 37 1430-1466 176-221 (423)
90 TIGR01242 26Sp45 26S proteasom 97.5 7.8E-05 1.7E-09 92.5 5.5 67 1430-1496 155-228 (364)
91 TIGR01817 nifA Nif-specific re 97.5 0.00034 7.4E-09 91.6 11.7 92 1414-1506 202-313 (534)
92 PF00158 Sigma54_activat: Sigm 97.5 0.00011 2.5E-09 79.4 5.8 121 1755-1889 13-142 (168)
93 TIGR02902 spore_lonB ATP-depen 97.5 0.00063 1.4E-08 87.9 13.6 36 1431-1466 86-131 (531)
94 PRK07003 DNA polymerase III su 97.5 0.00033 7.2E-09 89.7 10.6 132 1762-1911 36-179 (830)
95 PRK14956 DNA polymerase III su 97.5 0.00038 8.3E-09 86.1 10.8 38 1420-1457 26-66 (484)
96 PRK14958 DNA polymerase III su 97.5 0.00043 9.3E-09 88.4 11.7 155 1748-1924 22-193 (509)
97 PRK12402 replication factor C 97.5 0.00036 7.8E-09 86.4 10.8 48 1419-1466 22-76 (337)
98 COG2256 MGS1 ATPase related to 97.5 0.00024 5.1E-09 83.3 8.1 75 1426-1501 41-122 (436)
99 TIGR02880 cbbX_cfxQ probable R 97.5 0.00026 5.7E-09 84.0 8.7 62 1432-1495 59-133 (284)
100 PRK05342 clpX ATP-dependent pr 97.5 0.00011 2.4E-09 90.8 5.5 67 1432-1498 109-188 (412)
101 PRK06645 DNA polymerase III su 97.5 0.00061 1.3E-08 86.3 11.8 134 1762-1911 41-188 (507)
102 PF13177 DNA_pol3_delta2: DNA 97.4 0.00074 1.6E-08 73.0 10.8 140 1751-1909 6-160 (162)
103 TIGR00763 lon ATP-dependent pr 97.4 0.0034 7.4E-08 85.5 19.7 132 1765-1910 348-492 (775)
104 TIGR03689 pup_AAA proteasome A 97.4 0.00019 4.1E-09 90.2 6.9 31 1428-1458 213-243 (512)
105 CHL00181 cbbX CbbX; Provisiona 97.4 0.00032 7E-09 83.1 8.3 61 1434-1496 62-135 (287)
106 PRK05022 anaerobic nitric oxid 97.4 0.00093 2E-08 86.6 13.2 91 1413-1504 192-302 (509)
107 PRK12323 DNA polymerase III su 97.4 0.00053 1.1E-08 86.8 10.4 38 1420-1457 24-64 (700)
108 cd00009 AAA The AAA+ (ATPases 97.4 0.0006 1.3E-08 72.8 9.8 126 1764-1908 19-150 (151)
109 COG0466 Lon ATP-dependent Lon 97.4 0.00014 3E-09 90.9 5.0 65 1436-1500 355-434 (782)
110 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.0011 2.5E-08 76.6 12.5 78 1418-1498 23-105 (226)
111 PRK12402 replication factor C 97.4 0.00087 1.9E-08 83.0 12.2 149 1757-1923 27-198 (337)
112 COG2255 RuvB Holliday junction 97.4 0.00095 2.1E-08 74.5 10.8 72 1434-1506 55-126 (332)
113 TIGR00635 ruvB Holliday juncti 97.4 0.00084 1.8E-08 81.6 11.7 120 1765-1910 31-159 (305)
114 COG1222 RPT1 ATP-dependent 26S 97.4 0.00014 3E-09 83.6 4.3 115 1755-1899 174-308 (406)
115 PRK14949 DNA polymerase III su 97.4 0.00052 1.1E-08 89.8 10.0 132 1762-1911 36-179 (944)
116 CHL00081 chlI Mg-protoporyphyr 97.4 0.00032 7E-09 84.1 7.6 178 1433-1628 40-229 (350)
117 PRK14960 DNA polymerase III su 97.4 0.00081 1.8E-08 85.4 11.3 136 1754-1911 27-178 (702)
118 TIGR02442 Cob-chelat-sub cobal 97.4 0.00041 8.9E-09 91.7 9.3 157 1432-1611 26-192 (633)
119 TIGR02031 BchD-ChlD magnesium 97.4 0.00057 1.2E-08 89.2 10.4 142 1424-1612 8-153 (589)
120 PRK14964 DNA polymerase III su 97.4 0.00082 1.8E-08 84.4 11.3 144 1750-1911 21-176 (491)
121 PRK11388 DNA-binding transcrip 97.4 0.0013 2.8E-08 88.3 14.1 93 1413-1506 330-439 (638)
122 PRK14956 DNA polymerase III su 97.4 0.0008 1.7E-08 83.3 10.9 137 1763-1923 39-190 (484)
123 PRK08691 DNA polymerase III su 97.4 0.00065 1.4E-08 87.2 10.4 137 1754-1910 28-178 (709)
124 KOG0727|consensus 97.4 0.0003 6.6E-09 75.9 6.2 114 1755-1899 178-312 (408)
125 TIGR02030 BchI-ChlI magnesium 97.4 0.00032 6.9E-09 84.4 7.2 83 1535-1627 131-215 (337)
126 PF14532 Sigma54_activ_2: Sigm 97.3 9.2E-05 2E-09 78.0 2.3 87 1414-1507 4-93 (138)
127 PRK13407 bchI magnesium chelat 97.3 0.00032 6.9E-09 84.2 7.0 133 1765-1908 30-200 (334)
128 KOG0734|consensus 97.3 0.0003 6.6E-09 84.0 6.5 70 1429-1498 335-411 (752)
129 PRK07940 DNA polymerase III su 97.3 0.0011 2.4E-08 81.7 11.7 141 1763-1923 35-186 (394)
130 PRK00080 ruvB Holliday junctio 97.3 0.001 2.2E-08 81.4 11.4 119 1765-1909 52-179 (328)
131 PRK13342 recombination factor 97.3 0.0007 1.5E-08 85.4 10.1 66 1433-1499 38-108 (413)
132 PF12780 AAA_8: P-loop contain 97.3 0.00048 1E-08 80.1 7.9 162 1741-1924 7-212 (268)
133 PRK07764 DNA polymerase III su 97.3 0.00074 1.6E-08 90.4 10.6 146 1751-1924 24-190 (824)
134 PRK00411 cdc6 cell division co 97.3 0.012 2.6E-07 74.5 21.2 45 1434-1478 58-108 (394)
135 PLN00020 ribulose bisphosphate 97.3 0.00061 1.3E-08 80.0 8.4 84 1415-1498 126-227 (413)
136 PF01078 Mg_chelatase: Magnesi 97.3 0.00082 1.8E-08 73.6 8.9 151 1421-1598 12-165 (206)
137 PRK12323 DNA polymerase III su 97.3 0.00058 1.2E-08 86.5 8.6 147 1748-1911 22-184 (700)
138 TIGR02329 propionate_PrpR prop 97.3 0.0012 2.6E-08 84.5 11.7 91 1414-1505 218-329 (526)
139 PRK14958 DNA polymerase III su 97.3 0.0022 4.7E-08 82.1 13.9 37 1421-1457 25-64 (509)
140 PRK14963 DNA polymerase III su 97.3 0.0016 3.4E-08 83.1 12.5 38 1420-1457 22-62 (504)
141 PRK14960 DNA polymerase III su 97.3 0.0013 2.9E-08 83.5 11.5 37 1421-1457 24-63 (702)
142 PRK14962 DNA polymerase III su 97.3 0.0012 2.7E-08 83.3 11.3 130 1764-1911 36-177 (472)
143 PRK07994 DNA polymerase III su 97.3 0.0011 2.4E-08 85.8 11.0 40 1419-1458 23-65 (647)
144 COG2256 MGS1 ATPase related to 97.3 0.00088 1.9E-08 78.6 9.0 32 1757-1788 39-72 (436)
145 PRK14961 DNA polymerase III su 97.2 0.0017 3.6E-08 80.4 12.1 38 1420-1457 24-64 (363)
146 CHL00181 cbbX CbbX; Provisiona 97.2 0.00017 3.7E-09 85.4 3.3 119 1765-1911 60-197 (287)
147 PRK08903 DnaA regulatory inact 97.2 0.00098 2.1E-08 77.1 9.5 68 1430-1504 41-111 (227)
148 PRK10733 hflB ATP-dependent me 97.2 0.00048 1E-08 91.1 7.7 67 1430-1496 184-257 (644)
149 PRK14957 DNA polymerase III su 97.2 0.0023 4.9E-08 81.7 13.3 131 1762-1911 36-179 (546)
150 TIGR02928 orc1/cdc6 family rep 97.2 0.013 2.8E-07 73.3 20.1 48 1433-1480 42-99 (365)
151 PTZ00361 26 proteosome regulat 97.2 0.00037 8E-09 86.5 5.9 67 1429-1495 215-288 (438)
152 TIGR02030 BchI-ChlI magnesium 97.2 0.00085 1.8E-08 80.8 8.7 131 1764-1906 25-200 (337)
153 PRK08691 DNA polymerase III su 97.2 0.012 2.6E-07 76.0 19.3 39 1420-1458 24-65 (709)
154 PRK10820 DNA-binding transcrip 97.2 0.0015 3.1E-08 84.7 11.5 92 1413-1505 209-320 (520)
155 PRK06645 DNA polymerase III su 97.2 0.0032 7E-08 79.9 13.9 38 1420-1457 29-69 (507)
156 PRK15429 formate hydrogenlyase 97.2 0.002 4.4E-08 86.9 12.8 92 1414-1506 382-493 (686)
157 PLN00020 ribulose bisphosphate 97.2 0.002 4.4E-08 75.8 10.8 146 1742-1905 119-294 (413)
158 PTZ00111 DNA replication licen 97.2 0.0019 4.1E-08 85.2 11.7 132 1429-1621 490-647 (915)
159 TIGR00362 DnaA chromosomal rep 97.2 0.0053 1.2E-07 77.6 15.7 63 1434-1497 139-213 (405)
160 PRK14949 DNA polymerase III su 97.2 0.002 4.3E-08 84.5 11.7 38 1421-1458 25-65 (944)
161 PRK14963 DNA polymerase III su 97.1 0.0031 6.6E-08 80.5 13.3 132 1762-1910 34-175 (504)
162 PRK08451 DNA polymerase III su 97.1 0.0024 5.3E-08 80.9 12.1 139 1762-1923 34-186 (535)
163 PRK07994 DNA polymerase III su 97.1 0.0018 4E-08 83.7 11.1 130 1762-1911 36-179 (647)
164 PRK14952 DNA polymerase III su 97.1 0.0018 3.9E-08 83.5 10.9 144 1757-1923 28-187 (584)
165 TIGR02902 spore_lonB ATP-depen 97.1 0.0013 2.9E-08 85.0 9.8 138 1763-1910 85-263 (531)
166 PRK14951 DNA polymerase III su 97.1 0.0023 4.9E-08 82.8 11.8 146 1748-1911 22-184 (618)
167 PRK06620 hypothetical protein; 97.1 0.0015 3.3E-08 74.0 9.1 78 1408-1496 15-98 (214)
168 PRK08699 DNA polymerase III su 97.1 0.0015 3.2E-08 78.7 9.5 144 1762-1925 19-184 (325)
169 PRK10923 glnG nitrogen regulat 97.1 0.0028 6.1E-08 82.2 12.9 92 1414-1506 144-255 (469)
170 PHA02544 44 clamp loader, smal 97.1 0.0025 5.4E-08 77.9 11.6 112 1764-1909 43-159 (316)
171 TIGR00368 Mg chelatase-related 97.1 0.00064 1.4E-08 86.2 6.5 36 1420-1455 200-235 (499)
172 PRK00440 rfc replication facto 97.1 0.0027 6E-08 77.8 12.0 81 1419-1499 24-118 (319)
173 PRK06305 DNA polymerase III su 97.1 0.0034 7.3E-08 79.4 12.9 126 1763-1911 38-181 (451)
174 PRK04195 replication factor C 97.1 0.0044 9.5E-08 79.9 14.3 113 1764-1911 39-161 (482)
175 CHL00206 ycf2 Ycf2; Provisiona 97.1 0.0012 2.5E-08 91.4 9.0 45 1424-1468 1623-1667(2281)
176 smart00382 AAA ATPases associa 97.1 0.00077 1.7E-08 71.4 6.2 70 1433-1502 4-97 (148)
177 PRK05896 DNA polymerase III su 97.1 0.003 6.6E-08 80.5 12.1 37 1420-1456 24-63 (605)
178 PRK10787 DNA-binding ATP-depen 97.1 0.0041 9E-08 83.6 14.0 133 1765-1909 350-492 (784)
179 PRK07133 DNA polymerase III su 97.1 0.0025 5.4E-08 83.0 11.4 40 1419-1458 25-67 (725)
180 PRK14964 DNA polymerase III su 97.1 0.0048 1.1E-07 77.6 13.6 38 1420-1457 21-61 (491)
181 TIGR02903 spore_lon_C ATP-depe 97.1 0.0048 1E-07 81.2 14.2 34 1433-1466 177-220 (615)
182 TIGR02880 cbbX_cfxQ probable R 97.1 0.00075 1.6E-08 80.2 6.2 117 1765-1909 59-194 (284)
183 PRK14957 DNA polymerase III su 97.1 0.0026 5.7E-08 81.2 11.3 40 1418-1457 22-64 (546)
184 PRK08084 DNA replication initi 97.0 0.0021 4.6E-08 74.3 9.6 84 1410-1497 23-111 (235)
185 KOG0478|consensus 97.0 0.0025 5.4E-08 79.1 10.4 148 1430-1649 461-631 (804)
186 TIGR02881 spore_V_K stage V sp 97.0 0.0013 2.9E-08 77.5 8.1 120 1765-1910 43-178 (261)
187 TIGR02915 PEP_resp_reg putativ 97.0 0.0044 9.5E-08 79.9 13.5 92 1414-1506 145-256 (445)
188 KOG0989|consensus 97.0 0.0016 3.4E-08 73.7 7.9 113 1766-1909 59-187 (346)
189 PRK05896 DNA polymerase III su 97.0 0.0027 6E-08 80.9 10.9 129 1762-1910 36-178 (605)
190 PRK14088 dnaA chromosomal repl 97.0 0.0044 9.5E-08 78.3 12.4 57 1410-1466 106-170 (440)
191 PF13173 AAA_14: AAA domain 97.0 0.00046 1E-08 71.6 3.1 65 1433-1497 4-75 (128)
192 PRK05563 DNA polymerase III su 97.0 0.0033 7.1E-08 81.7 11.5 146 1754-1922 28-187 (559)
193 PRK07133 DNA polymerase III su 97.0 0.0042 9E-08 81.0 12.1 132 1762-1911 38-178 (725)
194 TIGR02397 dnaX_nterm DNA polym 97.0 0.0032 6.8E-08 78.6 10.9 40 1419-1458 21-63 (355)
195 COG1222 RPT1 ATP-dependent 26S 97.0 0.0014 3E-08 75.7 6.8 68 1428-1495 182-256 (406)
196 PRK14970 DNA polymerase III su 97.0 0.0058 1.3E-07 76.3 13.1 135 1763-1923 38-177 (367)
197 PRK00440 rfc replication facto 97.0 0.0071 1.5E-07 74.2 13.8 119 1765-1911 39-162 (319)
198 PRK14951 DNA polymerase III su 96.9 0.0042 9E-08 80.4 11.9 38 1420-1457 24-64 (618)
199 COG1223 Predicted ATPase (AAA+ 96.9 0.00092 2E-08 73.0 5.0 65 1432-1496 152-223 (368)
200 PRK00149 dnaA chromosomal repl 96.9 0.0067 1.4E-07 77.7 13.5 87 1410-1497 123-225 (450)
201 COG0470 HolB ATPase involved i 96.9 0.0048 1E-07 75.9 12.0 122 1762-1909 22-167 (325)
202 KOG0744|consensus 96.9 0.0012 2.6E-08 74.6 5.7 28 1761-1788 174-201 (423)
203 PRK14955 DNA polymerase III su 96.9 0.0033 7.2E-08 78.7 10.4 143 1762-1923 36-196 (397)
204 TIGR00678 holB DNA polymerase 96.9 0.003 6.4E-08 70.7 8.9 146 1763-1925 13-167 (188)
205 COG1223 Predicted ATPase (AAA+ 96.9 0.0015 3.4E-08 71.3 6.2 113 1765-1903 152-276 (368)
206 KOG0989|consensus 96.9 0.0027 5.9E-08 71.9 8.3 82 1423-1504 47-150 (346)
207 PRK07940 DNA polymerase III su 96.9 0.0047 1E-07 76.3 11.3 43 1586-1633 149-191 (394)
208 PF01078 Mg_chelatase: Magnesi 96.9 0.00029 6.3E-09 77.0 0.7 112 1763-1888 21-156 (206)
209 PRK08451 DNA polymerase III su 96.9 0.0078 1.7E-07 76.5 13.3 38 1419-1456 21-61 (535)
210 PRK06893 DNA replication initi 96.9 0.0037 8E-08 72.0 9.5 60 1435-1497 43-105 (229)
211 KOG2004|consensus 96.9 0.00084 1.8E-08 83.4 4.3 84 1418-1501 421-523 (906)
212 PRK05707 DNA polymerase III su 96.9 0.0053 1.1E-07 74.1 11.1 145 1762-1925 20-177 (328)
213 PRK05564 DNA polymerase III su 96.9 0.0068 1.5E-07 73.7 12.2 146 1751-1924 13-163 (313)
214 CHL00081 chlI Mg-protoporyphyr 96.8 0.0018 4E-08 77.8 7.0 129 1765-1905 39-212 (350)
215 PRK14086 dnaA chromosomal repl 96.8 0.019 4.2E-07 73.5 16.3 64 1433-1497 316-391 (617)
216 PRK08727 hypothetical protein; 96.8 0.0044 9.5E-08 71.6 9.9 62 1433-1497 43-107 (233)
217 PRK13341 recombination factor 96.8 0.0025 5.5E-08 84.4 8.8 64 1434-1498 55-124 (725)
218 COG0464 SpoVK ATPases of the A 96.8 0.0015 3.3E-08 84.8 6.7 72 1428-1499 273-351 (494)
219 PRK06647 DNA polymerase III su 96.8 0.0071 1.5E-07 78.3 12.5 128 1763-1910 37-178 (563)
220 PRK11361 acetoacetate metaboli 96.8 0.0085 1.8E-07 77.6 13.4 91 1414-1505 149-259 (457)
221 KOG0729|consensus 96.8 0.0029 6.4E-08 69.0 7.4 105 1764-1899 211-334 (435)
222 PF00308 Bac_DnaA: Bacterial d 96.8 0.0064 1.4E-07 69.3 10.8 87 1410-1498 9-112 (219)
223 KOG0728|consensus 96.8 0.0014 3.1E-08 70.7 5.1 122 1752-1899 167-304 (404)
224 TIGR02903 spore_lon_C ATP-depe 96.8 0.0033 7.1E-08 82.7 9.4 139 1764-1909 175-352 (615)
225 PRK09518 bifunctional cytidyla 96.8 0.0061 1.3E-07 82.3 12.2 26 1435-1460 5-30 (712)
226 PRK14969 DNA polymerase III su 96.8 0.0058 1.3E-07 78.9 11.5 39 1419-1457 23-64 (527)
227 TIGR02031 BchD-ChlD magnesium 96.8 0.0014 3E-08 85.7 5.7 126 1765-1905 17-154 (589)
228 cd01131 PilT Pilus retraction 96.8 0.0037 8E-08 70.2 8.5 89 1766-1857 3-91 (198)
229 COG1221 PspF Transcriptional r 96.8 0.0031 6.7E-08 76.3 8.0 90 1415-1504 85-194 (403)
230 PRK15115 response regulator Gl 96.8 0.0041 8.9E-08 80.1 9.8 91 1415-1506 141-251 (444)
231 PRK09112 DNA polymerase III su 96.7 0.014 3E-07 71.2 13.6 161 1747-1924 28-211 (351)
232 TIGR00368 Mg chelatase-related 96.7 0.002 4.4E-08 81.8 6.6 133 1760-1906 207-386 (499)
233 PRK13531 regulatory ATPase Rav 96.7 0.0041 8.9E-08 76.9 8.9 153 1756-1921 31-193 (498)
234 PRK14971 DNA polymerase III su 96.7 0.0087 1.9E-07 78.4 12.5 142 1763-1923 38-190 (614)
235 PRK05563 DNA polymerase III su 96.7 0.0095 2.1E-07 77.5 12.6 37 1421-1457 25-64 (559)
236 PRK08058 DNA polymerase III su 96.7 0.0097 2.1E-07 72.5 12.0 152 1752-1924 16-180 (329)
237 PRK14948 DNA polymerase III su 96.7 0.0099 2.1E-07 77.9 12.7 41 1418-1458 22-65 (620)
238 PRK14959 DNA polymerase III su 96.7 0.0048 1E-07 79.2 9.4 37 1421-1457 25-64 (624)
239 PRK09862 putative ATP-dependen 96.7 0.003 6.6E-08 79.7 7.6 172 1420-1621 199-391 (506)
240 PF07724 AAA_2: AAA domain (Cd 96.7 0.0011 2.5E-08 71.9 3.4 72 1049-1121 8-104 (171)
241 KOG0738|consensus 96.7 0.0018 3.9E-08 75.1 5.0 68 1430-1497 244-318 (491)
242 PRK12422 chromosomal replicati 96.7 0.048 1E-06 68.9 18.1 55 1410-1465 112-178 (445)
243 PRK07399 DNA polymerase III su 96.7 0.012 2.6E-07 70.7 12.2 158 1749-1925 11-194 (314)
244 PRK14965 DNA polymerase III su 96.7 0.0079 1.7E-07 78.6 11.4 38 1420-1457 24-64 (576)
245 TIGR02397 dnaX_nterm DNA polym 96.6 0.0097 2.1E-07 74.2 11.8 127 1763-1909 35-175 (355)
246 PRK14969 DNA polymerase III su 96.6 0.0058 1.3E-07 78.8 9.7 146 1751-1911 25-179 (527)
247 PRK14953 DNA polymerase III su 96.6 0.017 3.7E-07 73.6 13.7 40 1418-1457 22-64 (486)
248 TIGR00382 clpX endopeptidase C 96.6 0.0044 9.6E-08 76.3 8.1 114 1764-1891 116-247 (413)
249 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0041 8.8E-08 73.0 7.6 24 1767-1790 2-25 (249)
250 PRK14970 DNA polymerase III su 96.6 0.011 2.4E-07 73.8 11.8 39 1419-1457 24-65 (367)
251 PRK09087 hypothetical protein; 96.6 0.0079 1.7E-07 68.8 9.6 80 1408-1496 20-100 (226)
252 TIGR01818 ntrC nitrogen regula 96.6 0.015 3.2E-07 75.5 13.4 92 1413-1505 139-250 (463)
253 COG1219 ClpX ATP-dependent pro 96.6 0.0037 7.9E-08 70.8 6.3 67 1431-1497 97-176 (408)
254 KOG0651|consensus 96.6 0.0043 9.3E-08 70.1 6.8 107 1763-1899 165-289 (388)
255 PRK13808 adenylate kinase; Pro 96.6 0.0047 1E-07 73.4 7.6 22 1767-1788 3-24 (333)
256 PRK14953 DNA polymerase III su 96.6 0.011 2.5E-07 75.2 11.5 145 1762-1924 36-189 (486)
257 PRK09111 DNA polymerase III su 96.6 0.009 2E-07 77.6 10.8 157 1747-1924 29-202 (598)
258 PRK13342 recombination factor 96.5 0.0079 1.7E-07 76.0 9.9 111 1765-1911 37-152 (413)
259 TIGR02442 Cob-chelat-sub cobal 96.5 0.0034 7.3E-08 83.2 6.9 129 1765-1905 26-194 (633)
260 PRK08118 topology modulation p 96.5 0.0016 3.4E-08 70.9 3.0 23 1766-1788 3-25 (167)
261 PRK06851 hypothetical protein; 96.5 0.025 5.4E-07 68.5 13.4 45 1434-1480 217-264 (367)
262 PRK14955 DNA polymerase III su 96.5 0.012 2.7E-07 73.6 11.4 38 1421-1458 25-65 (397)
263 TIGR00678 holB DNA polymerase 96.5 0.0094 2E-07 66.6 9.2 36 1422-1457 2-40 (188)
264 PRK04132 replication factor C 96.5 0.015 3.2E-07 77.6 12.2 113 1439-1627 574-698 (846)
265 PRK14948 DNA polymerase III su 96.4 0.013 2.9E-07 76.7 11.5 143 1749-1910 23-180 (620)
266 PRK03992 proteasome-activating 96.4 0.0056 1.2E-07 76.4 7.4 124 1764-1913 165-305 (389)
267 PRK14952 DNA polymerase III su 96.4 0.016 3.5E-07 74.8 11.7 39 1419-1457 20-61 (584)
268 PRK06090 DNA polymerase III su 96.4 0.034 7.3E-07 66.5 13.5 153 1754-1925 15-179 (319)
269 PRK06964 DNA polymerase III su 96.4 0.031 6.7E-07 67.5 13.3 149 1762-1925 19-203 (342)
270 TIGR03689 pup_AAA proteasome A 96.4 0.0046 1E-07 78.0 6.4 152 1756-1923 206-379 (512)
271 PRK06305 DNA polymerase III su 96.4 0.02 4.3E-07 72.6 12.0 39 1420-1458 25-66 (451)
272 PRK15424 propionate catabolism 96.4 0.0077 1.7E-07 77.1 8.3 132 1750-1893 227-376 (538)
273 COG0466 Lon ATP-dependent Lon 96.4 0.0032 7E-08 79.1 4.7 127 1048-1179 354-495 (782)
274 PRK14950 DNA polymerase III su 96.3 0.015 3.2E-07 76.6 11.0 130 1762-1911 36-180 (585)
275 PRK06647 DNA polymerase III su 96.3 0.023 4.9E-07 73.7 12.3 39 1419-1457 23-64 (563)
276 PRK14965 DNA polymerase III su 96.3 0.0096 2.1E-07 77.8 9.1 136 1762-1923 36-188 (576)
277 KOG0741|consensus 96.3 0.0073 1.6E-07 72.7 7.1 80 1759-1847 249-331 (744)
278 KOG0743|consensus 96.3 0.003 6.5E-08 75.8 3.9 63 1431-1494 235-297 (457)
279 PRK06871 DNA polymerase III su 96.3 0.026 5.6E-07 67.6 11.8 149 1756-1924 16-177 (325)
280 PRK07764 DNA polymerase III su 96.3 0.02 4.4E-07 77.0 12.0 38 1420-1457 23-63 (824)
281 PRK09862 putative ATP-dependen 96.3 0.0059 1.3E-07 77.1 6.4 137 1760-1910 206-388 (506)
282 PRK14954 DNA polymerase III su 96.3 0.015 3.2E-07 75.8 10.2 139 1762-1923 36-196 (620)
283 PRK08084 DNA replication initi 96.3 0.0068 1.5E-07 70.1 6.5 27 1764-1790 45-71 (235)
284 PF13401 AAA_22: AAA domain; P 96.3 0.0016 3.4E-08 68.0 1.2 73 1431-1503 4-108 (131)
285 KOG0737|consensus 96.2 0.019 4.2E-07 67.1 9.9 84 1411-1495 107-198 (386)
286 PTZ00088 adenylate kinase 1; P 96.2 0.0055 1.2E-07 69.9 5.5 23 1766-1788 8-30 (229)
287 PRK09111 DNA polymerase III su 96.2 0.023 4.9E-07 74.0 11.8 39 1420-1458 32-73 (598)
288 PRK06893 DNA replication initi 96.2 0.0091 2E-07 68.8 7.3 28 1764-1791 39-66 (229)
289 PRK14529 adenylate kinase; Pro 96.2 0.0094 2E-07 67.3 7.2 89 1767-1863 3-100 (223)
290 smart00350 MCM minichromosome 96.2 0.0075 1.6E-07 78.0 7.3 126 1765-1908 237-383 (509)
291 PRK08769 DNA polymerase III su 96.2 0.026 5.7E-07 67.5 11.3 148 1762-1925 24-184 (319)
292 smart00763 AAA_PrkA PrkA AAA d 96.2 0.017 3.6E-07 69.2 9.3 80 1539-1627 240-323 (361)
293 PRK05642 DNA replication initi 96.2 0.0078 1.7E-07 69.5 6.5 62 1433-1497 47-111 (234)
294 KOG0726|consensus 96.2 0.0069 1.5E-07 67.3 5.5 115 1756-1900 209-343 (440)
295 PRK07261 topology modulation p 96.2 0.0092 2E-07 65.3 6.6 22 1767-1788 3-24 (171)
296 PTZ00454 26S protease regulato 96.2 0.0046 1E-07 76.6 4.7 130 1757-1911 170-317 (398)
297 COG1474 CDC6 Cdc6-related prot 96.2 0.27 5.9E-06 60.4 19.8 64 1418-1481 27-98 (366)
298 PRK05342 clpX ATP-dependent pr 96.1 0.01 2.2E-07 73.7 7.6 114 1764-1891 108-239 (412)
299 PRK10365 transcriptional regul 96.1 0.036 7.7E-07 71.5 12.9 88 1415-1503 146-253 (441)
300 PRK14526 adenylate kinase; Pro 96.1 0.012 2.6E-07 66.3 7.4 89 1767-1862 3-100 (211)
301 PRK14959 DNA polymerase III su 96.1 0.014 3E-07 75.1 8.7 129 1763-1911 37-179 (624)
302 PRK14950 DNA polymerase III su 96.1 0.037 8.1E-07 72.9 12.7 38 1419-1456 23-63 (585)
303 KOG2028|consensus 96.1 0.015 3.3E-07 66.7 7.6 117 1766-1911 164-282 (554)
304 TIGR01242 26Sp45 26S proteasom 96.0 0.0081 1.8E-07 74.7 6.2 122 1764-1911 156-294 (364)
305 PRK07993 DNA polymerase III su 96.0 0.061 1.3E-06 65.3 13.4 154 1753-1925 13-179 (334)
306 KOG0727|consensus 96.0 0.0031 6.7E-08 68.4 2.0 68 1429-1496 187-261 (408)
307 PLN02674 adenylate kinase 96.0 0.014 3E-07 66.8 7.3 24 1765-1788 32-55 (244)
308 PF03028 Dynein_heavy: Dynein 96.0 0.031 6.8E-07 76.0 12.1 216 1428-1718 113-350 (707)
309 KOG1969|consensus 96.0 0.0078 1.7E-07 75.5 5.6 74 1434-1507 329-411 (877)
310 PRK07471 DNA polymerase III su 96.0 0.037 7.9E-07 68.0 11.4 162 1748-1925 25-212 (365)
311 TIGR02974 phageshock_pspF psp 96.0 0.01 2.2E-07 72.1 6.4 144 1749-1906 7-166 (329)
312 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0082 1.8E-07 66.8 5.3 22 1767-1788 2-23 (183)
313 TIGR02329 propionate_PrpR prop 96.0 0.011 2.4E-07 75.9 7.0 121 1759-1893 230-361 (526)
314 PF00910 RNA_helicase: RNA hel 96.0 0.018 3.9E-07 57.5 7.1 24 1767-1790 1-24 (107)
315 PLN02842 nucleotide kinase 96.0 0.01 2.2E-07 74.3 6.3 21 1768-1788 1-21 (505)
316 COG1618 Predicted nucleotide k 95.9 0.017 3.7E-07 59.4 6.7 99 1763-1867 4-132 (179)
317 COG2204 AtoC Response regulato 95.9 0.039 8.4E-07 68.3 11.0 91 1413-1503 146-255 (464)
318 PRK10536 hypothetical protein; 95.9 0.03 6.5E-07 63.7 9.1 158 1760-1924 70-260 (262)
319 PRK09112 DNA polymerase III su 95.9 0.031 6.8E-07 68.2 10.0 40 1418-1457 29-71 (351)
320 PRK06217 hypothetical protein; 95.9 0.012 2.7E-07 65.3 6.1 23 1766-1788 3-25 (183)
321 PRK13406 bchD magnesium chelat 95.9 0.015 3.2E-07 75.3 7.5 133 1424-1621 16-172 (584)
322 PF13173 AAA_14: AAA domain 95.8 0.017 3.6E-07 60.0 6.4 116 1763-1909 1-121 (128)
323 PRK14971 DNA polymerase III su 95.8 0.061 1.3E-06 70.7 12.8 37 1420-1456 25-64 (614)
324 COG0470 HolB ATPase involved i 95.8 0.019 4.1E-07 70.7 7.9 24 1433-1456 26-49 (325)
325 TIGR01241 FtsH_fam ATP-depende 95.8 0.02 4.3E-07 74.3 8.4 124 1763-1911 87-226 (495)
326 COG2812 DnaX DNA polymerase II 95.8 0.018 3.9E-07 72.2 7.4 144 1749-1908 23-176 (515)
327 PRK11388 DNA-binding transcrip 95.7 0.0092 2E-07 80.2 5.2 121 1755-1889 339-465 (638)
328 smart00382 AAA ATPases associa 95.7 0.013 2.7E-07 62.0 5.2 26 1764-1789 2-27 (148)
329 KOG0745|consensus 95.7 0.0067 1.5E-07 71.4 3.2 68 1431-1499 226-307 (564)
330 PRK05707 DNA polymerase III su 95.7 0.039 8.5E-07 66.7 9.8 44 1414-1457 5-48 (328)
331 PLN02459 probable adenylate ki 95.7 0.02 4.2E-07 65.8 6.8 23 1766-1788 31-53 (261)
332 TIGR00764 lon_rel lon-related 95.7 0.11 2.3E-06 68.5 14.4 41 1418-1458 24-64 (608)
333 PF13207 AAA_17: AAA domain; P 95.7 0.0084 1.8E-07 61.5 3.5 23 1766-1788 1-23 (121)
334 PRK02496 adk adenylate kinase; 95.7 0.0093 2E-07 66.4 4.0 22 1767-1788 4-25 (184)
335 KOG0652|consensus 95.7 0.024 5.2E-07 62.0 6.8 25 1764-1788 205-229 (424)
336 COG1221 PspF Transcriptional r 95.7 0.015 3.2E-07 70.5 5.9 141 1755-1908 92-245 (403)
337 PRK14087 dnaA chromosomal repl 95.7 0.024 5.3E-07 71.8 8.1 56 1410-1466 116-181 (450)
338 PRK00279 adk adenylate kinase; 95.6 0.015 3.3E-07 66.5 5.7 22 1767-1788 3-24 (215)
339 TIGR01351 adk adenylate kinase 95.6 0.02 4.2E-07 65.3 6.6 22 1767-1788 2-23 (210)
340 KOG0482|consensus 95.6 0.039 8.4E-07 66.3 8.8 206 1433-1701 377-642 (721)
341 PRK14954 DNA polymerase III su 95.6 0.065 1.4E-06 69.9 11.8 39 1420-1458 24-65 (620)
342 PRK05642 DNA replication initi 95.6 0.013 2.8E-07 67.7 4.8 25 1765-1789 46-70 (234)
343 PTZ00361 26 proteosome regulat 95.6 0.0062 1.4E-07 75.9 2.3 26 1763-1788 216-241 (438)
344 PRK05917 DNA polymerase III su 95.6 0.073 1.6E-06 62.3 10.8 140 1755-1910 10-154 (290)
345 KOG0743|consensus 95.5 0.037 8.1E-07 66.7 8.5 41 1884-1924 341-385 (457)
346 PF03266 NTPase_1: NTPase; In 95.5 0.011 2.3E-07 64.1 3.7 23 1767-1789 2-24 (168)
347 PRK06526 transposase; Provisio 95.5 0.014 3E-07 67.9 4.8 86 1763-1863 97-186 (254)
348 PRK14530 adenylate kinase; Pro 95.5 0.022 4.7E-07 65.2 6.3 24 1765-1788 4-27 (215)
349 CHL00176 ftsH cell division pr 95.5 0.034 7.4E-07 73.0 8.7 124 1763-1912 215-355 (638)
350 COG4088 Predicted nucleotide k 95.5 0.012 2.7E-07 62.6 3.7 25 1766-1790 3-27 (261)
351 PRK14528 adenylate kinase; Pro 95.4 0.02 4.4E-07 63.6 5.6 23 1766-1788 3-25 (186)
352 PRK14532 adenylate kinase; Pro 95.4 0.023 5.1E-07 63.5 6.1 23 1766-1788 2-24 (188)
353 PF00406 ADK: Adenylate kinase 95.4 0.012 2.6E-07 63.1 3.6 84 1769-1862 1-96 (151)
354 TIGR01420 pilT_fam pilus retra 95.4 0.053 1.2E-06 66.5 9.5 26 1764-1789 122-147 (343)
355 PRK14527 adenylate kinase; Pro 95.3 0.025 5.4E-07 63.3 6.0 24 1765-1788 7-30 (191)
356 PRK11608 pspF phage shock prot 95.3 0.028 6E-07 68.5 6.7 143 1748-1904 13-171 (326)
357 PRK13341 recombination factor 95.3 0.052 1.1E-06 72.3 9.8 24 1765-1788 53-76 (725)
358 TIGR00390 hslU ATP-dependent p 95.3 0.018 3.9E-07 69.8 5.0 36 1432-1467 48-83 (441)
359 COG0606 Predicted ATPase with 95.3 0.0088 1.9E-07 72.5 2.3 118 1757-1888 191-333 (490)
360 PRK14088 dnaA chromosomal repl 95.3 0.0074 1.6E-07 76.3 1.7 124 1765-1912 131-265 (440)
361 PRK08116 hypothetical protein; 95.3 0.02 4.2E-07 67.4 5.0 70 1432-1502 115-199 (268)
362 PRK09183 transposase/IS protei 95.3 0.028 6.1E-07 65.8 6.3 71 1428-1498 99-179 (259)
363 cd01428 ADK Adenylate kinase ( 95.2 0.021 4.4E-07 64.3 5.0 22 1767-1788 2-23 (194)
364 COG1419 FlhF Flagellar GTP-bin 95.2 0.028 6.1E-07 67.5 6.2 33 1764-1796 203-235 (407)
365 PRK08181 transposase; Validate 95.1 0.043 9.3E-07 64.2 7.3 87 1762-1863 104-194 (269)
366 PRK07132 DNA polymerase III su 95.1 0.18 3.9E-06 60.0 12.5 140 1762-1925 16-161 (299)
367 COG1219 ClpX ATP-dependent pro 95.1 0.017 3.7E-07 65.6 3.6 72 1764-1847 97-169 (408)
368 COG1239 ChlI Mg-chelatase subu 95.1 0.037 8.1E-07 66.4 6.5 132 1765-1907 39-214 (423)
369 COG2255 RuvB Holliday junction 95.1 0.022 4.7E-07 64.1 4.2 127 1047-1191 55-193 (332)
370 PRK08233 hypothetical protein; 95.1 0.023 4.9E-07 63.2 4.6 24 1765-1788 4-27 (182)
371 PF06414 Zeta_toxin: Zeta toxi 95.0 0.014 3.1E-07 65.7 2.9 88 1763-1864 14-117 (199)
372 TIGR01360 aden_kin_iso1 adenyl 95.0 0.021 4.6E-07 63.8 4.3 24 1765-1788 4-27 (188)
373 PF04665 Pox_A32: Poxvirus A32 95.0 0.13 2.8E-06 58.5 10.3 129 1763-1907 12-154 (241)
374 PRK05201 hslU ATP-dependent pr 95.0 0.02 4.3E-07 69.5 4.1 37 1432-1468 51-87 (443)
375 PLN02200 adenylate kinase fami 95.0 0.029 6.2E-07 64.6 5.2 24 1765-1788 44-67 (234)
376 KOG0742|consensus 95.0 0.03 6.5E-07 65.3 5.3 86 1409-1494 355-454 (630)
377 PRK08116 hypothetical protein; 95.0 0.02 4.3E-07 67.4 4.0 29 1763-1791 113-141 (268)
378 PF12780 AAA_8: P-loop contain 95.0 0.035 7.5E-07 64.9 5.8 98 1409-1506 8-112 (268)
379 PRK10820 DNA-binding transcrip 95.0 0.034 7.3E-07 72.2 6.4 136 1756-1905 219-370 (520)
380 KOG3595|consensus 94.9 0.4 8.8E-06 69.4 17.6 207 1022-1233 105-339 (1395)
381 KOG0731|consensus 94.9 0.015 3.2E-07 75.2 2.8 39 1429-1467 342-380 (774)
382 smart00763 AAA_PrkA PrkA AAA d 94.9 0.038 8.2E-07 66.2 6.0 28 1763-1790 77-104 (361)
383 PF00493 MCM: MCM2/3/5 family 94.9 0.013 2.8E-07 71.3 2.1 32 1431-1462 57-88 (331)
384 COG3829 RocR Transcriptional r 94.9 0.041 8.9E-07 67.9 6.3 130 1414-1594 251-390 (560)
385 COG0563 Adk Adenylate kinase a 94.9 0.028 6.1E-07 61.4 4.4 95 1766-1864 2-102 (178)
386 PF13671 AAA_33: AAA domain; P 94.8 0.021 4.5E-07 60.7 3.3 22 1767-1788 2-23 (143)
387 PRK08118 topology modulation p 94.8 0.017 3.7E-07 62.8 2.7 31 1434-1464 4-34 (167)
388 KOG0739|consensus 94.8 0.016 3.5E-07 64.8 2.4 68 1432-1499 167-241 (439)
389 PF07931 CPT: Chloramphenicol 94.8 0.021 4.5E-07 61.8 3.3 97 1765-1869 2-113 (174)
390 KOG0738|consensus 94.8 0.052 1.1E-06 63.5 6.5 35 1754-1788 234-269 (491)
391 TIGR02928 orc1/cdc6 family rep 94.8 0.18 3.9E-06 63.1 12.2 25 1765-1789 41-65 (365)
392 PRK05022 anaerobic nitric oxid 94.8 0.045 9.9E-07 71.1 6.9 120 1756-1889 202-330 (509)
393 TIGR03015 pepcterm_ATPase puta 94.7 0.052 1.1E-06 64.7 6.8 47 1410-1456 21-68 (269)
394 PRK10536 hypothetical protein; 94.7 0.2 4.3E-06 57.3 10.8 149 1412-1594 56-212 (262)
395 PRK06762 hypothetical protein; 94.7 0.025 5.4E-07 61.8 3.7 24 1765-1788 3-26 (166)
396 PRK06835 DNA replication prote 94.7 0.11 2.3E-06 62.9 9.0 84 1430-1516 182-277 (329)
397 PF13207 AAA_17: AAA domain; P 94.6 0.019 4E-07 59.0 2.2 26 1435-1460 3-28 (121)
398 PF03029 ATP_bind_1: Conserved 94.6 0.02 4.3E-07 65.9 2.5 38 1769-1806 1-38 (238)
399 PRK08727 hypothetical protein; 94.6 0.065 1.4E-06 62.0 6.7 27 1764-1790 41-67 (233)
400 PF13245 AAA_19: Part of AAA d 94.5 0.047 1E-06 50.3 4.4 29 1760-1788 6-35 (76)
401 cd03115 SRP The signal recogni 94.5 0.055 1.2E-06 59.5 5.8 95 1766-1863 2-109 (173)
402 TIGR01817 nifA Nif-specific re 94.5 0.048 1E-06 71.6 6.2 135 1757-1905 212-362 (534)
403 PRK13949 shikimate kinase; Pro 94.5 0.025 5.5E-07 61.6 3.0 23 1766-1788 3-25 (169)
404 PRK14722 flhF flagellar biosyn 94.5 0.074 1.6E-06 64.8 7.2 28 1762-1789 135-162 (374)
405 TIGR00362 DnaA chromosomal rep 94.5 0.024 5.2E-07 71.7 3.2 125 1764-1913 136-271 (405)
406 KOG0728|consensus 94.5 0.086 1.9E-06 57.5 6.8 40 1427-1466 177-216 (404)
407 TIGR00150 HI0065_YjeE ATPase, 94.5 0.057 1.2E-06 55.5 5.2 37 1753-1789 11-47 (133)
408 KOG1533|consensus 94.5 0.029 6.2E-07 61.1 3.2 147 1764-1914 2-169 (290)
409 PF01695 IstB_IS21: IstB-like 94.4 0.027 5.8E-07 61.8 3.1 87 1762-1863 45-135 (178)
410 TIGR00064 ftsY signal recognit 94.4 0.29 6.3E-06 57.7 11.7 39 1764-1802 72-110 (272)
411 COG0593 DnaA ATPase involved i 94.4 0.33 7.1E-06 59.5 12.3 85 1410-1498 88-190 (408)
412 PRK00149 dnaA chromosomal repl 94.4 0.02 4.2E-07 73.4 2.1 123 1765-1912 149-282 (450)
413 PRK05818 DNA polymerase III su 94.4 0.14 3E-06 58.7 8.5 131 1762-1910 5-147 (261)
414 TIGR01425 SRP54_euk signal rec 94.4 0.36 7.7E-06 59.9 12.8 138 1765-1909 101-274 (429)
415 COG1855 ATPase (PilT family) [ 94.3 0.05 1.1E-06 64.6 5.0 53 1763-1815 262-320 (604)
416 PRK12377 putative replication 94.3 0.056 1.2E-06 62.4 5.4 63 1432-1495 102-175 (248)
417 COG2805 PilT Tfp pilus assembl 94.3 0.041 9E-07 62.5 4.1 32 1762-1793 122-154 (353)
418 PF13238 AAA_18: AAA domain; P 94.3 0.035 7.6E-07 57.6 3.5 22 1767-1788 1-22 (129)
419 KOG2004|consensus 94.2 0.046 1E-06 68.7 4.7 127 1048-1179 442-583 (906)
420 KOG0480|consensus 94.2 0.05 1.1E-06 67.5 4.9 170 1431-1678 378-574 (764)
421 PRK08058 DNA polymerase III su 94.2 0.19 4.1E-06 61.3 10.1 39 1418-1456 12-53 (329)
422 TIGR00041 DTMP_kinase thymidyl 94.2 0.059 1.3E-06 60.7 5.3 27 1765-1791 4-30 (195)
423 cd02019 NK Nucleoside/nucleoti 94.2 0.041 9E-07 49.8 3.2 22 1767-1788 2-23 (69)
424 PF10662 PduV-EutP: Ethanolami 94.2 0.03 6.5E-07 57.9 2.6 21 1766-1786 3-23 (143)
425 PRK13765 ATP-dependent proteas 94.2 0.4 8.6E-06 63.0 13.3 41 1418-1458 37-77 (637)
426 cd01129 PulE-GspE PulE/GspE Th 94.2 0.22 4.7E-06 58.6 10.1 33 1757-1789 72-105 (264)
427 KOG2028|consensus 94.2 0.076 1.6E-06 61.3 5.9 39 1424-1462 153-193 (554)
428 PF13245 AAA_19: Part of AAA d 94.2 0.063 1.4E-06 49.5 4.4 42 1424-1466 3-52 (76)
429 PF13555 AAA_29: P-loop contai 94.1 0.047 1E-06 47.5 3.2 23 1766-1788 25-47 (62)
430 PRK06871 DNA polymerase III su 94.1 0.3 6.5E-06 58.7 11.2 44 1414-1457 4-50 (325)
431 PF05673 DUF815: Protein of un 94.1 0.22 4.9E-06 56.1 9.4 101 1764-1898 52-157 (249)
432 COG1126 GlnQ ABC-type polar am 94.1 0.035 7.5E-07 60.4 2.8 25 1762-1786 26-50 (240)
433 KOG0745|consensus 94.1 0.035 7.7E-07 65.6 3.1 59 1764-1834 226-284 (564)
434 PRK05564 DNA polymerase III su 94.0 0.25 5.3E-06 60.2 10.6 39 1418-1456 10-51 (313)
435 PRK15429 formate hydrogenlyase 94.0 0.085 1.8E-06 71.4 7.3 119 1756-1888 391-518 (686)
436 COG4987 CydC ABC-type transpor 94.0 0.054 1.2E-06 66.6 4.5 154 1762-1946 362-526 (573)
437 PRK08903 DnaA regulatory inact 93.9 0.097 2.1E-06 60.5 6.5 68 1046-1120 44-114 (227)
438 PHA02624 large T antigen; Prov 93.9 0.2 4.3E-06 63.5 9.4 41 1748-1788 415-455 (647)
439 KOG0731|consensus 93.9 0.079 1.7E-06 68.8 6.1 32 1756-1787 334-367 (774)
440 cd03228 ABCC_MRP_Like The MRP 93.9 0.082 1.8E-06 58.0 5.5 125 1763-1905 27-167 (171)
441 KOG1532|consensus 93.9 0.063 1.4E-06 59.7 4.4 142 1762-1924 17-205 (366)
442 PRK07952 DNA replication prote 93.9 0.15 3.3E-06 58.7 7.8 78 1433-1513 101-190 (244)
443 PRK06620 hypothetical protein; 93.9 0.15 3.3E-06 57.8 7.8 131 1022-1187 16-155 (214)
444 COG1116 TauB ABC-type nitrate/ 93.8 0.038 8.2E-07 62.0 2.7 25 1764-1788 29-53 (248)
445 PRK08181 transposase; Validate 93.8 0.074 1.6E-06 62.2 5.2 87 1428-1517 103-199 (269)
446 PHA02774 E1; Provisional 93.8 0.24 5.2E-06 62.6 9.8 140 1749-1924 419-583 (613)
447 PRK13833 conjugal transfer pro 93.8 0.058 1.3E-06 64.6 4.4 33 1757-1789 137-169 (323)
448 KOG1534|consensus 93.8 0.046 9.9E-07 58.4 3.0 42 1763-1804 2-43 (273)
449 KOG1970|consensus 93.8 0.057 1.2E-06 66.1 4.2 45 1765-1813 111-155 (634)
450 KOG0991|consensus 93.7 0.043 9.4E-07 59.5 2.8 68 1436-1503 53-133 (333)
451 KOG0991|consensus 93.7 0.062 1.3E-06 58.3 3.9 25 1764-1788 48-72 (333)
452 PRK13406 bchD magnesium chelat 93.7 0.098 2.1E-06 68.0 6.6 134 1766-1915 27-172 (584)
453 PF00910 RNA_helicase: RNA hel 93.7 0.036 7.8E-07 55.3 2.1 63 1435-1498 2-64 (107)
454 PRK00411 cdc6 cell division co 93.7 0.3 6.4E-06 61.9 11.0 38 1765-1802 56-93 (394)
455 cd00820 PEPCK_HprK Phosphoenol 93.7 0.045 9.7E-07 53.7 2.6 22 1764-1785 15-36 (107)
456 TIGR02788 VirB11 P-type DNA tr 93.7 0.16 3.5E-06 61.4 8.0 30 1759-1788 139-168 (308)
457 COG3839 MalK ABC-type sugar tr 93.7 0.04 8.6E-07 65.7 2.7 25 1764-1788 29-53 (338)
458 COG3829 RocR Transcriptional r 93.7 0.071 1.5E-06 65.9 4.9 132 1750-1893 254-394 (560)
459 PRK13695 putative NTPase; Prov 93.6 0.14 3.1E-06 56.3 6.9 24 1766-1789 2-25 (174)
460 PRK06090 DNA polymerase III su 93.6 0.52 1.1E-05 56.6 11.9 44 1414-1457 5-51 (319)
461 PF03215 Rad17: Rad17 cell cyc 93.6 0.091 2E-06 67.2 5.9 24 1765-1788 46-69 (519)
462 PRK07993 DNA polymerase III su 93.5 0.66 1.4E-05 56.5 12.9 43 1414-1456 4-49 (334)
463 PF00435 Spectrin: Spectrin re 93.5 0.45 9.7E-06 47.0 9.7 102 136-237 3-104 (105)
464 COG1241 MCM2 Predicted ATPase 93.5 0.19 4.1E-06 65.4 8.5 182 1433-1675 321-569 (682)
465 cd01130 VirB11-like_ATPase Typ 93.5 0.067 1.5E-06 59.5 4.1 32 1758-1789 19-50 (186)
466 PF00448 SRP54: SRP54-type pro 93.5 0.061 1.3E-06 60.0 3.7 31 1765-1795 2-32 (196)
467 PF00931 NB-ARC: NB-ARC domain 93.5 0.11 2.3E-06 62.7 6.1 26 1763-1788 18-43 (287)
468 KOG0054|consensus 93.5 0.05 1.1E-06 75.6 3.5 118 1763-1881 1165-1357(1381)
469 TIGR00390 hslU ATP-dependent p 93.5 0.077 1.7E-06 64.5 4.6 24 1765-1788 48-71 (441)
470 PF05970 PIF1: PIF1-like helic 93.4 0.15 3.3E-06 63.2 7.4 114 1418-1564 7-131 (364)
471 PF13401 AAA_22: AAA domain; P 93.4 0.062 1.3E-06 55.9 3.4 27 1763-1789 3-29 (131)
472 TIGR02782 TrbB_P P-type conjug 93.4 0.074 1.6E-06 63.6 4.4 33 1757-1789 125-157 (299)
473 PF13604 AAA_30: AAA domain; P 93.4 0.046 1E-06 61.2 2.5 28 1764-1791 18-45 (196)
474 PRK03839 putative kinase; Prov 93.4 0.056 1.2E-06 59.9 3.2 23 1766-1788 2-24 (180)
475 COG4525 TauB ABC-type taurine 93.4 0.055 1.2E-06 57.4 2.8 27 1762-1788 29-55 (259)
476 PF03193 DUF258: Protein of un 93.4 0.094 2E-06 55.7 4.5 33 1754-1787 26-58 (161)
477 PRK10078 ribose 1,5-bisphospho 93.3 0.055 1.2E-06 60.3 3.0 24 1765-1788 3-26 (186)
478 COG1224 TIP49 DNA helicase TIP 93.3 0.044 9.5E-07 63.4 2.2 40 1430-1469 64-105 (450)
479 cd02027 APSK Adenosine 5'-phos 93.3 0.052 1.1E-06 57.9 2.6 23 1767-1789 2-24 (149)
480 KOG3079|consensus 93.3 0.24 5.2E-06 52.6 7.3 25 1764-1788 8-32 (195)
481 PRK10416 signal recognition pa 93.3 0.21 4.5E-06 60.2 8.0 38 1764-1801 114-151 (318)
482 PTZ00111 DNA replication licen 93.3 0.14 3.1E-06 68.1 7.0 130 1762-1908 490-640 (915)
483 TIGR00150 HI0065_YjeE ATPase, 93.3 0.051 1.1E-06 55.8 2.3 42 1417-1458 8-49 (133)
484 cd01120 RecA-like_NTPases RecA 93.3 0.14 3E-06 55.6 6.0 24 1767-1790 2-25 (165)
485 PRK00131 aroK shikimate kinase 93.2 0.063 1.4E-06 59.1 3.3 26 1763-1788 3-28 (175)
486 KOG1533|consensus 93.2 0.06 1.3E-06 58.7 2.9 39 1431-1469 2-43 (290)
487 PF06068 TIP49: TIP49 C-termin 93.2 0.037 8.1E-07 65.4 1.5 54 1416-1469 31-90 (398)
488 PRK08769 DNA polymerase III su 93.2 0.4 8.7E-06 57.5 10.1 44 1414-1457 6-52 (319)
489 PRK05703 flhF flagellar biosyn 93.2 0.16 3.4E-06 63.8 7.0 93 1764-1863 221-326 (424)
490 PRK07261 topology modulation p 93.1 0.063 1.4E-06 58.7 3.1 29 1434-1462 3-31 (171)
491 COG1136 SalX ABC-type antimicr 93.1 0.038 8.2E-07 61.9 1.2 25 1764-1788 31-55 (226)
492 TIGR02524 dot_icm_DotB Dot/Icm 93.1 0.34 7.4E-06 59.4 9.5 28 1763-1790 133-160 (358)
493 PRK08939 primosomal protein Dn 93.1 0.13 2.9E-06 61.5 5.9 87 1763-1864 155-246 (306)
494 PRK06921 hypothetical protein; 93.1 0.25 5.3E-06 58.2 8.0 63 1431-1494 117-188 (266)
495 KOG0737|consensus 93.0 0.061 1.3E-06 63.1 2.8 31 1758-1788 121-151 (386)
496 PRK12726 flagellar biosynthesi 93.0 0.14 3E-06 61.6 5.8 97 1763-1864 205-313 (407)
497 PRK14531 adenylate kinase; Pro 93.0 0.077 1.7E-06 58.9 3.6 25 1764-1788 2-26 (183)
498 TIGR02322 phosphon_PhnN phosph 93.0 0.071 1.5E-06 59.0 3.3 24 1765-1788 2-25 (179)
499 PRK13894 conjugal transfer ATP 93.0 0.1 2.2E-06 62.8 4.7 32 1757-1788 141-172 (319)
500 COG0465 HflB ATP-dependent Zn 93.0 0.062 1.3E-06 68.4 3.0 70 1429-1498 181-257 (596)
No 1
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.6e-58 Score=516.43 Aligned_cols=231 Identities=65% Similarity=1.112 Sum_probs=187.0
Q ss_pred cccccccCCCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhccc
Q psy2654 1400 FDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKG 1479 (1949)
Q Consensus 1400 y~~ey~g~~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g 1479 (1949)
|||||+|+.+++|+||+|+|||.+|++|++.+.|+++.||+||||||++|+||++||+++++|||++++|++.++|++.|
T Consensus 1 YgyEY~G~~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G 80 (231)
T PF12774_consen 1 YGYEYLGNSPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKG 80 (231)
T ss_dssp -------S-------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHH
T ss_pred CCccccCCCCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHH
Q psy2654 1480 LAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQV 1559 (1949)
Q Consensus 1480 ~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~ 1559 (1949)
++++|+|+||||||+++.++||++++++..|+++++
T Consensus 81 ~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~-------------------------------------------- 116 (231)
T PF12774_consen 81 LAQSGAWLCFDEFNRLSEEVLSVISQQIQSIQDALR-------------------------------------------- 116 (231)
T ss_dssp HHHHT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HhhcCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhc--------------------------------------------
Confidence 999999999999999999999999999888876554
Q ss_pred HhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHHhhhchhhHHHH
Q psy2654 1560 KSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLL 1639 (1949)
Q Consensus 1560 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~l 1639 (1949)
.+...+.+.|.+|.++|++++|+||||+|.||++||+|||++||||+|+.||...|+|++|.+.||.+++.|
T Consensus 117 --------~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~L 188 (231)
T PF12774_consen 117 --------AKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAEILLLSQGFKDAKSL 188 (231)
T ss_dssp --------CTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHHHCCCTSSHHHH
T ss_pred --------ccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHHHHcCchhHHHH
Confidence 344567777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHhhcccccCCC
Q psy2654 1640 SRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDR 1682 (1949)
Q Consensus 1640 a~k~~~~~~~~~~~~s~~~~~~~~lr~l~~vl~~a~~~~~~~~ 1682 (1949)
|+|++.||+++++++|+|.|||||||++|+||..|+.++|+.|
T Consensus 189 a~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr~~p 231 (231)
T PF12774_consen 189 AKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKRGDP 231 (231)
T ss_dssp HHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999865
No 2
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=1.1e-55 Score=493.66 Aligned_cols=228 Identities=65% Similarity=1.105 Sum_probs=191.9
Q ss_pred ccccccccCCcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhccccchh
Q psy2654 1013 FDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKG 1092 (1949)
Q Consensus 1013 y~~Ey~g~~~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~~~~~~g 1092 (1949)
|||||+|+.+|+|+||+|+|||.++++|+++++|+++.||+|||||||+|+||++||+++++|||++.+|+.+++|+++|
T Consensus 1 YgyEY~G~~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G 80 (231)
T PF12774_consen 1 YGYEYLGNSPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKG 80 (231)
T ss_dssp -------S-------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHH
T ss_pred CCccccCCCCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhcc
Q psy2654 1093 LAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFR 1172 (1949)
Q Consensus 1093 ~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr 1172 (1949)
++++|+|+||||||+++.++||++++++..++++++.+..++.|.|+.+.+++++++|+||||+|.|+.+||+|||.+||
T Consensus 81 ~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR 160 (231)
T PF12774_consen 81 LAQSGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR 160 (231)
T ss_dssp HHHHT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE
T ss_pred HhhcCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhhheeeecccccc
Q psy2654 1173 PCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKN 1240 (1949)
Q Consensus 1173 ~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~v~~ 1240 (1949)
||+|+.||...|+|++|.+.||.+++.+|+|++.+|.++++++|+|.|||||||++|+|+..+|.+++
T Consensus 161 pvam~~PD~~~I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~kr 228 (231)
T PF12774_consen 161 PVAMMVPDLSLIAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLKR 228 (231)
T ss_dssp EEE--S--HHHHHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHHT
T ss_pred eeEEeCCCHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999988764
No 3
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=100.00 E-value=7.9e-52 Score=508.10 Aligned_cols=776 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc--------------
Q psy2654 1021 TPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC-------------- 1086 (1949)
Q Consensus 1021 ~~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~-------------- 1086 (1949)
+..+|.|-.|-.....++.-+....+..+.||+|+||+-++..|++.+|...+.++.++.+|.+.+
T Consensus 126 p~~~V~t~~t~~~L~k~~~~l~~~~pI~l~g~~gsgksfLisel~~~~G~~iV~Ihl~e~TDak~LiGtYts~KpG~fEw 205 (4600)
T COG5271 126 PEIRVGTLETLDRLAKEAVDLKIAVPIYLEGGRGSGKSFLISELCDEGGQRIVEIHLREITDAKVLIGTYTSPKPGDFEW 205 (4600)
T ss_pred chhhhhhhhHHHHHHHhhhhhhhccceEEecCccccHHHHHHHHHHHhCceEEEEecccccCchheeeeccCCCCCceee
Q ss_pred -cccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCch
Q psy2654 1087 -GNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPE 1165 (1949)
Q Consensus 1087 -~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~ 1165 (1949)
.+++..++.+|.|..|..++..|.+|||++...|..=+-..-.+ |+++..+.++++|.| ...++--
T Consensus 206 ~~GvL~~avv~G~WILf~~Idkap~~vLs~Ll~llekR~L~ipsr-------GEtV~A~~~Fqif~T------ss~k~~i 272 (4600)
T COG5271 206 MKGVLIEAVVSGDWILFKRIDKAPHGVLSYLLTLLEKRRLLIPSR-------GETVLAHDNFQIFFT------SSMKTKI 272 (4600)
T ss_pred ccchhhhhhhcCcEEEEeecccCchhHHHHHHHHHHhhhhccCCC-------CceEEecCCEEEEEe------ccchhhH
Q ss_pred hHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhhheeeecccccccchhh
Q psy2654 1166 NLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKNWLNNV 1245 (1949)
Q Consensus 1166 ~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~v~~wl~~l 1245 (1949)
.-..++.-+..-.||. -+...+.-|.....+.+++..+|.-.....+..+
T Consensus 273 lg~rlw~ildl~qpde----~~~vv~~~~p~l~~v~P~l~~~yk~I~~~~~q~~-------------------------- 322 (4600)
T COG5271 273 LGQRLWQILDLTQPDE----CVEVVRFDMPDLVFVGPLLFVFYKAIEMFEAQCT-------------------------- 322 (4600)
T ss_pred hHHHHHhhhcccCchH----HHHHHHhcCchheeecchHHHHHHHHHHHHHhhH--------------------------
Q ss_pred HHHHHHhHHH-----HHHHHHHhhc--CCCchhhhhcCCcchhhhcchhhhhhHHHHHHHHHHHHHHHHHHHhccceEEE
Q psy2654 1246 TDSMRRTGIH-----CMSLAVAAYD--EKPREQWLFDYPGQTALCGTQIWWTTEVSICFARLEEGYENALKDYNKKQFII 1318 (1949)
Q Consensus 1246 ~~~m~~tl~~-----~~~~~~~~~~--~~~~~~w~~~~p~Qv~l~~~qi~wt~~i~~~~~~~~~~~~~~l~~~~~~~~lv 1318 (1949)
...+.. +.+.+.-... ....+..+..-|-|++.-..+----.+...|+.......+....-.+.--.-.
T Consensus 323 ----f~~l~K~~rv~~~rd~~k~v~rv~~l~~~~~i~s~~~~I~~~~~d~~f~eavdcf~~~ip~f~~l~~I~k~~g~sl 398 (4600)
T COG5271 323 ----FRLLTKIYRVFRDRDADKKVCRVTKLKEGECIKSCPKRICGNNEDCLFEEAVDCFGAFIPHFRSLLKIKKRMGSSL 398 (4600)
T ss_pred ----HHHhhhhheeeehhhHHHHHHHHHHHHhccCCCCCchhhccchHHHHHHHHHHhhccccchhhhHHHHHHHhhhhc
Q ss_pred eccCCCchHHHHHHHHHHHhccCCCcccccccccccccchhcccccccceeecCccccCCccccccccCcceEeecccee
Q psy2654 1319 GFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGRYSDSGFLSYGSLLGDCFANICDAEF 1398 (1949)
Q Consensus 1319 ~~~~~gk~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~w~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1398 (1949)
|-...-.......++......+..++-.....+.-+...
T Consensus 399 ~i~~e~~l~l~qsVp~~~nL~h~i~igRc~L~k~~~~i~----------------------------------------- 437 (4600)
T COG5271 399 GIGVEERLRLYQSVPNVLNLKHEIDIGRCALTKTEIPII----------------------------------------- 437 (4600)
T ss_pred CCChHHhhhHHhccchhhccccchhhhhhhhhhccccce-----------------------------------------
Q ss_pred ccccccccCCCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhh-----
Q psy2654 1399 KFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC----- 1473 (1949)
Q Consensus 1399 ~y~~ey~g~~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l----- 1473 (1949)
--.|++ +..|..+.+.+.+++.+++++.|.+|+|+||||||++|++||.++|..+.++|.++++...++
T Consensus 438 ----s~s~ns--fAfTs~sl~lleql~~~Iq~nep~LLVGeTGtGKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGyk 511 (4600)
T COG5271 438 ----SLSGNS--FAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYK 511 (4600)
T ss_pred ----eecccc--eeehhhHHHHHHHHHHHhccCCceEEEecCCCchhhHHHHHHHHhhhhheehhhhhhccchhhcCCcc
Q ss_pred -----------------------------------hhhcccccccCccccccccccccchhhHH----------------
Q psy2654 1474 -----------------------------------GNIYKGLAQTGAWGCFDEFNRISVEVLSV---------------- 1502 (1949)
Q Consensus 1474 -----------------------------------~~~~~g~~~~g~w~~~de~~~l~~~~ls~---------------- 1502 (1949)
+|.+...+=..+--.+.|.++++..+|..
T Consensus 512 pIn~~tl~lpl~e~f~~if~~Tfs~kKn~kfi~m~~r~~~~~~wkn~~Klw~ea~kis~~~ldgq~~~~n~qkrqkrl~~ 591 (4600)
T COG5271 512 PINGSTLGLPLHERFIDIFEGTFSMKKNIKFICMEQRVSVPVCWKNKEKLWWEANKISSKALDGQQPLPNPQKRQKRLSN 591 (4600)
T ss_pred cCCCcccccchHHHHHHHHHhhcchhhhHHHHHhHHhhccchhhhhHHHHHHHHHHHHHHhccCCCCCCChHHHhhhhhh
Q ss_pred ----------HHHHHHHHHHHHHhhhccccc-cccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccc
Q psy2654 1503 ----------VAVQVKSVLDSVKMRKSRFNF-MGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKS 1571 (1949)
Q Consensus 1503 ----------~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~ 1571 (1949)
+...++.+...++...++|-| +.+|.++..+++|+|.++||+|+++.++|+.|.+.+.+--..+..+..
T Consensus 592 q~~l~nqwadfe~~vk~fe~~l~~~en~f~F~fveG~Lvk~~r~GeWlLLDEINLas~eTLe~I~~lL~~~es~ilLsE~ 671 (4600)
T COG5271 592 QVELRNQWADFEAVVKRFEGLLKLLENRFHFVFVEGILVKCMRNGEWLLLDEINLASEETLELIDGLLGKKESGILLSES 671 (4600)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcccceEEEEehhhHHHHHhcCceEEeeccccccHHHHHHHHhhhcCcccceeeecc
Q ss_pred cceeccceEEEecCeeEEEEeCC-CCCCCCCChhhHhhcccccccccCCHHH-----HHHHHHhhhchhhHHHHHHHHHH
Q psy2654 1572 RFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRPCAMVVPDFAL-----ICEIMLVSEGFQEARLLSRKFIT 1645 (1949)
Q Consensus 1572 ~~~~~~~~i~~~~~~~~f~tmnp-~~~g~~~LP~~lk~~fr~v~~~~pD~~~-----i~e~~L~~~gf~~~~~la~k~~~ 1645 (1949)
. +-+.|++||+|++|+|||| ++.|+++||.++|++|++|++..|+..+ |+.-++-+....+-.. ++++..
T Consensus 672 G---D~~Pi~~Hp~FrlFgCMNP~tDvGKr~le~~~rsrFteIyVhsp~~~l~DllsII~kyig~y~Is~E~v-~~~IaE 747 (4600)
T COG5271 672 G---DLRPIRIHPGFRLFGCMNPGTDVGKRKLEGSFRSRFTEIYVHSPSTSLKDLLSIIHKYIGRYEISEERV-SRKIAE 747 (4600)
T ss_pred C---CccccccCCCceEEeecCCCcccccccCCcccccceeEEEEeCccccHHHHHHHHHHHHhheecchHHH-hHHHHH
Q ss_pred HHHHHHHHhcCCCCCC-------CchhhHHHHHHhhcccccCCCCCcHHHHHHHHHhhhcCCCCCcccHHHHHHhHhccC
Q psy2654 1646 LYSLCKELLSKQDHYD-------WGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKIITEDLQVFMGLIGDLF 1718 (1949)
Q Consensus 1646 ~~~~~~~~~s~~~~~~-------~~lr~l~~vl~~a~~~~~~~~~~~e~~~l~~a~~~~~~~~l~~~d~~~~~~l~~~~f 1718 (1949)
||..++.+--...-.| |+.|++.++|.+......-+.-. ..++.+++.+++..+......++..++..++
T Consensus 748 lyleaKslsl~~~lvdga~q~Ph~s~RTL~RtL~yVt~i~~iyglr---rSlYegFcmsflTlLD~~Sesil~~~~~kft 824 (4600)
T COG5271 748 LYLEAKSLSLGKELVDGAVQEPHVSGRTLVRTLNYVTNIGEIYGLR---RSLYEGFCMSFLTLLDFVSESILVSLLSKFT 824 (4600)
T ss_pred HHHHHHHhccCCeeccCcCCCcccchHhHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred CCC---------CCCCCCchhHHHHHHHHHHh--------cCCCcChHHHHHHHHHHH-HHhcCcEEEEEecCCCChhHH
Q psy2654 1719 PAL---------DVPRKRDIDFEKQVRQATID--------MKLQPEDSFILKVVQLVE-LFAVRHSVFIIGFAGTGKSCV 1780 (1949)
Q Consensus 1719 p~~---------~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~k~~~l~~-~l~~~~~vll~G~~gsGKTt~ 1780 (1949)
-+. +.|+..+..+.....-.... .++..+|..-...+.+.+ +...+.||+|.|||+||||++
T Consensus 825 lg~l~~~~ai~kq~p~~p~~~yi~f~hyw~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSM 904 (4600)
T COG5271 825 LGLLESQNAIEKQKPKVPDHSYIAFCHYWKHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSM 904 (4600)
T ss_pred hcccccchhhhhcCCCCCCccHHHHHHHHHhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchH
Q ss_pred HHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCC---cccChHHHHHHHHhhcCCCCCcEEEEc--CCCCccch
Q psy2654 1781 WKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTRE---WKDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWI 1855 (1949)
Q Consensus 1781 ~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~---w~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~ 1855 (1949)
|..||+.+ ++..+++.||.+.+.+|+.|.|..+..+ |++|+|+.++|+| .|||+| +...+.++
T Consensus 905 I~yla~~t----ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--------yWIVLDELNLApTDVL 972 (4600)
T COG5271 905 ILYLARET----GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--------YWIVLDELNLAPTDVL 972 (4600)
T ss_pred HHHHHHHh----CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--------cEEEeeccccCcHHHH
Q ss_pred hhHHhhhcCCcceeccCCceeecCCCceEEEEeCC-------CCCCChhhhccceEEEecC
Q psy2654 1856 ESLNTVMDDNKVLTLASNERIALTPSMRLLFEISN-------LRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1856 e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~-------l~~asPa~vsr~~~v~~~~ 1909 (1949)
|+||++|||||.|++|+.+.+..|++-.++|.|+| =+..|-|.-.|+-=++||+
T Consensus 973 EaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFdd 1033 (4600)
T COG5271 973 EALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDD 1033 (4600)
T ss_pred HHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhccc
No 4
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=100.00 E-value=7.9e-49 Score=481.88 Aligned_cols=808 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhhHHHhhhhhccccccccchhccchhh
Q psy2654 934 QINQLNALIVLLLGELTVGDRQKIMTICTIDVHSRDVVAKLILQKIES---SGAFMWQSQLRHRWDKEVGDCFANICDAE 1010 (1949)
Q Consensus 934 ~~~~l~~l~~~~~~~l~~~~~~k~~~li~~~~~~rd~~~~l~~~~i~~---~~~f~W~~qlr~~~~~~~~~~~i~~~~~~ 1010 (1949)
+..+++-... .+++-...|..+...+.-.....|.+..-+..++-+ .+..+-+...-.---+..+.-++..|-.|
T Consensus 776 L~RtL~yVt~--i~~iyglrrSlYegFcmsflTlLD~~Sesil~~~~~kftlg~l~~~~ai~kq~p~~p~~~yi~f~hyw 853 (4600)
T COG5271 776 LVRTLNYVTN--IGEIYGLRRSLYEGFCMSFLTLLDFVSESILVSLLSKFTLGLLESQNAIEKQKPKVPDHSYIAFCHYW 853 (4600)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhhhhcCCCCCCccHHHHHHHH
Q ss_pred hcccccccccCCcceecCchhhHHHHHHHHHHHhcCCCC-CCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc---
Q psy2654 1011 FKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAP-AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC--- 1086 (1949)
Q Consensus 1011 ~~y~~Ey~g~~~rlv~tp~~~r~~~~l~~al~~~~~~~~-~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~--- 1086 (1949)
..=|.--.....-+|+||-..+.|+.+++|-...+++.+ .||+.+|||+++++||+..|..++.+|.++++|.+..
T Consensus 854 ~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGT 933 (4600)
T COG5271 854 KHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGT 933 (4600)
T ss_pred HhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhc
Q ss_pred ------------cccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCc---cccccccceee
Q psy2654 1087 ------------GNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGEN---IKLVTTVGMFI 1151 (1949)
Q Consensus 1087 ------------~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~---i~l~~~~~~f~ 1151 (1949)
.+++.++...|.|.++||.|.+|.+||+++...|.+-.+. |+.+. +..+|++.+|+
T Consensus 934 yvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRel---------fIPETqevV~PHp~F~lFA 1004 (4600)
T COG5271 934 YVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNREL---------FIPETQEVVVPHPNFRLFA 1004 (4600)
T ss_pred eeecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccce---------ecCCcceeeccCCCeeEEe
Q ss_pred ecCC--CCCCCCCCchhHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhh
Q psy2654 1152 TMNP--GYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIK 1229 (1949)
Q Consensus 1152 t~n~--~~~~~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~ 1229 (1949)
|.|| +|+||.-|..++|+.|-.+.+-.-....+-+| ...|-+-+++.|+||+.+|...+-.-|-.+
T Consensus 1005 TQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~I--Lh~rc~iapSyakKiVeVyr~Ls~rRs~~r---------- 1072 (4600)
T COG5271 1005 TQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEI--LHGRCEIAPSYAKKIVEVYRGLSSRRSINR---------- 1072 (4600)
T ss_pred ecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHH--HhccCccCHHHHHHHHHHHHHhhhhhhHHH----------
Q ss_pred heeeecccccccchhhHHHHHHhHHHHHHHHHHhhcCCCchhhhhcCCcchhhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy2654 1230 SVLVVAGSLKNWLNNVTDSMRRTGIHCMSLAVAAYDEKPREQWLFDYPGQTALCGTQIWWTTEVSICFARLEEGYENALK 1309 (1949)
Q Consensus 1230 ~v~~~~g~v~~wl~~l~~~m~~tl~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~i~~~~~~~~~~~~~~l~ 1309 (1949)
++..-.-.+.+-..+.|.-.+..+++++....-..+.
T Consensus 1073 -------------------------------------------ifeqknsfaTLRDLFrWa~R~avgy~qla~~Gymlla 1109 (4600)
T COG5271 1073 -------------------------------------------IFEQKNSFATLRDLFRWAGRIAVGYDQLAFLGYMLLA 1109 (4600)
T ss_pred -------------------------------------------HHHhhhhHHHHHHHHHHhccccchHHHHHHhhHHHHH
Q ss_pred HhccceEEEeccCCCchHHHHHHHHHHHhccCCCccc----ccccccccccchhcccccccceeecCccccCCccccccc
Q psy2654 1310 DYNKKQFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYN----DLEPKAVTNDELFGIINPSTREWKDGRYSDSGFLSYGSL 1385 (1949)
Q Consensus 1310 ~~~~~~~lv~~~~~gk~~~~~~l~~~~~~~~~~~~~~----~l~~~~~~~~~l~~~~~~~~~~w~d~~~~~~~~~~~~~~ 1385 (1949)
+..... ..|.++-+++.+.+......+-.. ++.-+.+++
T Consensus 1110 ER~R~~-------~dkv~V~~v~ekvmkvk~d~d~~y~smed~slkel~~------------------------------ 1152 (4600)
T COG5271 1110 ERQREL-------EDKVRVGQVFEKVMKVKSDEDYKYDSMEDISLKELSK------------------------------ 1152 (4600)
T ss_pred HHhcCH-------HhhhhHHHHHHHHHhhhhcchhhhhhHhhhhHHhhhh------------------------------
Q ss_pred cCcceEeeccceeccccccccCCCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCC
Q psy2654 1386 LGDCFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCS 1465 (1949)
Q Consensus 1386 ~~~~~v~~~~~~~~y~~ey~g~~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~ 1465 (1949)
.|.|..+.|....+..|+....|++|+|++|||||+.++-||..+||-+..+|.+
T Consensus 1153 -------------------------v~wt~~m~rl~~lv~~Cl~~kepvlLVgetgcgktt~cqvLa~~~~rel~~~nah 1207 (4600)
T COG5271 1153 -------------------------VVWTEPMCRLERLVGKCLVTKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAH 1207 (4600)
T ss_pred -------------------------cccccchhhhhhHHHHhhcccCceEEEeecCcchhHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCCCHhhhhhhcccccccCcc---------ccccccccccchhhHHHHHH-------HHHHHHHHHhhhccccccccchh
Q psy2654 1466 EQMDYRSCGNIYKGLAQTGAW---------GCFDEFNRISVEVLSVVAVQ-------VKSVLDSVKMRKSRFNFMGESSL 1529 (1949)
Q Consensus 1466 ~~~~~~~l~~~~~g~~~~g~w---------~~~de~~~l~~~~ls~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~ 1529 (1949)
..+..-++.+.=+.+.--+.- ..+.=++-......+..... +..+-.....+.....-+.+|++
T Consensus 1208 q~Te~gdiigaqrPVrnrse~~y~l~k~l~~a~nV~~~~didL~e~~~~~ssSdn~nls~~~e~~I~k~r~lfeW~DGpL 1287 (4600)
T COG5271 1208 QETENGDIIGAQRPVRNRSETGYGLTKALDIASNVFKTRDIDLIEMHRGISSSDNDNLSFIGESFIFKNRKLFEWKDGPL 1287 (4600)
T ss_pred hhccccccccccccchhhhhhhhhHHHHHHHHHhhhhhhcchHHHHHhhhcccccccHHHHHHHHHHHhhhheeeccchH
Q ss_pred hhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCC-CCCCCCCChhhHhh
Q psy2654 1530 AGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKA 1608 (1949)
Q Consensus 1530 ~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp-~~~g~~~LP~~lk~ 1608 (1949)
+.+++.|+..++|||++|+..||+++++.+++.........+. ....+.+|.+|++|||||| |+.|+++|+++||+
T Consensus 1288 V~AMk~GdfFLlDEIsLAdDSVLERLNSVLE~~RtL~l~E~g~---a~~~vtA~dgF~ffATMNPGGDyGKkELSPALRN 1364 (4600)
T COG5271 1288 VKAMKCGDFFLLDEISLADDSVLERLNSVLESQRTLYLTETGN---AAEEVTAHDGFRFFATMNPGGDYGKKELSPALRN 1364 (4600)
T ss_pred HHHHhcCCeeEeeeccccchHHHHHHHHhhcccceEEEeecCC---ccceeeeccCceEEEeeCCCCccchhhCCHHHhc
Q ss_pred cccccccccC-CHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCC--CchhhHHHHHHhhcccccCCCCCc
Q psy2654 1609 LFRPCAMVVP-DFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYD--WGLRAIKSVLVVAGSLKRGDRQRP 1685 (1949)
Q Consensus 1609 ~fr~v~~~~p-D~~~i~e~~L~~~gf~~~~~la~k~~~~~~~~~~~~s~~~~~~--~~lr~l~~vl~~a~~~~~~~~~~~ 1685 (1949)
+|+++.+.+- |...+.-+.+...-| +-..||+.++.+++.....+ -|. .++|.+-.+.......+...
T Consensus 1365 RFTEiwvp~m~D~~d~~~iv~~~l~~-~~vdla~p~ve~~kw~a~~l----~~~~vISiRd~l~~VEFIn~~~i~d---- 1435 (4600)
T COG5271 1365 RFTEIWVPVMSDEADLIFIVLVDLRF-GEVDLAKPSVETFKWLARSL----LYNDVISIRDLLLIVEFINRREILD---- 1435 (4600)
T ss_pred ccceEeecccccccchhhhhhhhhhc-CcccccchHHHHHHHHHHHh----hccCceeHHHHHHHHHHHHHHHhhh----
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHHhHhccCCCCCCCCCCchhHHHHHHHHHH-------------------------
Q psy2654 1686 EDQVLMRALRDFNIPKIITEDLQVFMGLIGDLFPALDVPRKRDIDFEKQVRQATI------------------------- 1740 (1949)
Q Consensus 1686 e~~~l~~a~~~~~~~~l~~~d~~~~~~l~~~~fp~~~~~~~~~~~~~~~~~~~~~------------------------- 1740 (1949)
-..++.+|...++...+-.-....+ .++..-.++.++.|-
T Consensus 1436 ~~~~l~~~~smvfidalG~fst~~l---------------aen~~dl~s~r~~c~v~l~~L~g~~i~~~~~~~n~i~f~d 1500 (4600)
T COG5271 1436 LNLVLFNAVSMVFIDALGEFSTVAL---------------AENGLDLESERQRCFVWLEALEGAGIKGIEADVNAIYFED 1500 (4600)
T ss_pred hhhHhhhhhhHHHHHHhcccchhHH---------------hhcccchhHHHHHHHHHHHHhccCCceeeecccceeEecc
Q ss_pred -------------------hcCCCcChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccC
Q psy2654 1741 -------------------DMKLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE 1801 (1949)
Q Consensus 1741 -------------------~~~l~~~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~ 1801 (1949)
..---.++.-...+..+.+++++.+|+||.|.||.|||++|.+||+.+ ++...+||
T Consensus 1501 ~~~f~g~f~iP~~~~~~S~Ssf~l~spTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~t-----G~kliRIN 1575 (4600)
T COG5271 1501 ERMFGGDFVIPYLVEHHSSSSFDLESPTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKT-----GKKLIRIN 1575 (4600)
T ss_pred cceeccccccccccccccCccccccCCchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHh-----cCceEEee
Q ss_pred CCccC-cccccccccCCCCC----cccChHHHHHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCc
Q psy2654 1802 PKAVT-NDELFGIINPSTRE----WKDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNE 1874 (1949)
Q Consensus 1802 p~~~~-~~el~G~~~~~~~~----w~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge 1874 (1949)
....| ..+|||++.|...+ |.|..|.++||+| .||++| +....+++|-||.+||..+...+|+=+
T Consensus 1576 LSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--------~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld 1647 (4600)
T COG5271 1576 LSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--------GWVLLDEINLASQSVLEGLNACLDHRREAYIPELD 1647 (4600)
T ss_pred ccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--------CEEEeehhhhhHHHHHHHHHHHHhhcccccccccc
Q ss_pred eeecCCCceEEEEeCCCCC-------CChhhhccceEEEecC
Q psy2654 1875 RIALTPSMRLLFEISNLRT-------ATPATVSRAGILYINP 1909 (1949)
Q Consensus 1875 ~i~~~~~~~~ifE~~~l~~-------asPa~vsr~~~v~~~~ 1909 (1949)
...--++-..+|.++|..+ ..-+.|.|+.+||||.
T Consensus 1648 ~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~ 1689 (4600)
T COG5271 1648 KTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDG 1689 (4600)
T ss_pred ceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecc
No 5
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=1.3e-46 Score=473.17 Aligned_cols=388 Identities=28% Similarity=0.458 Sum_probs=275.1
Q ss_pred hHHHHHHHHhhhhcCCccccccccCCCCcccccccccccccccchhHHHhhcCCCCCCCcchhhhhhHhhhhccccCCCc
Q psy2654 295 MEEEQTMVEEKESVAPTAEQEEDDGGDNFDRDESVDLDMDKKSDEDDERKKLLKPPSDEPIDMDVYGAASEMGSEAAPLP 374 (1949)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (1949)
+..+...++.+..+|..+ ..|....+.|....+.++|.+.++.......+....+......++++..+++...
T Consensus 3 L~~l~~~l~~~~~lW~~~-~~~~~~~~~w~~~~~~~ld~~~l~~~v~~~~~~l~~l~~~~~~~~v~~~l~~~i~------ 75 (408)
T PF08393_consen 3 LEELEKELEPLKKLWSLI-SEWQEQLEEWMNTPFSDLDVEELEEEVEEFLKQLRKLPKSLREWPVYKELKKKIE------ 75 (408)
T ss_dssp -------------------------HHHHHH--TTT-----------------------------HHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCChhhcCHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHH------
Confidence 344455556666666655 4444455567777888889888887777776666666655555566655554444
Q ss_pred hhhhchhhhhhhhchhhhhhhcCCCChhhhhhhhHHHHHHHHhHhHHHhhccccccCCCCCCCcEEEEEEecCCCeeecc
Q psy2654 375 DILEHTEVADIGENEDDALSAVPGMPDEFDQESSSQNLKLTSRVHLVYITDEMCHTDFSNKAPLFRVSFSLEEPDLVFTP 454 (1949)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 454 (1949)
.+...+|.+..|.++.++.+||..+....+. . .+ |
T Consensus 76 -------------~f~~~lpli~~L~~~~mk~rHW~~l~~~~g~-----------~--------------------~~-~ 110 (408)
T PF08393_consen 76 -------------EFKKYLPLIQDLRNPAMKPRHWKQLFQILGI-----------Q--------------------DF-P 110 (408)
T ss_dssp -------------HHHHHTHHHHHTTSTT--CHHHHHHHHCTT-------------------------------------
T ss_pred -------------HHHHhcHHHHHhcCccchHHHHHHHHHHhcc-----------c--------------------cc-c
Confidence 4445555555555555555666555433220 0 01 2
Q ss_pred CCCCCchhhHhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccceeeEeeeccccCccccccHHHHHHHHHHHHHHH
Q psy2654 455 TLNFNDEAEEESLCSQLKEIIEDITDMGVKIKRVAKRTENTYKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQVQL 534 (1949)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~i~~i~~~A~~e~~ie~~l~~~~~~w~~~~f~~~~~~~~~~~~l~~~~ei~~~led~~~~l 534 (1949)
..+++++.+.+..+..+.+.|++|+..|.+|..||+.+++|...|+.++|++.+|+..+.++++++++|++.|+|++..+
T Consensus 111 ~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L 190 (408)
T PF08393_consen 111 NESLTLQDLLDLGLLDHEDKIEEISEQAQKEYKIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTL 190 (408)
T ss_dssp TTS-SHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhceeeeeccccchhheecchHHHHHHHHHHHHHH
Confidence 23577788888888888999999999999999999999999999999999999998877899999999999999999999
Q ss_pred HhhhcCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy2654 535 QNMASSKFVGYFQKEVNEWQIKLSNADAVISIWIEVQRTWQHLESIFIGSDDIRQQLPEDSRRFDATDKAFRALAQDMHK 614 (1949)
Q Consensus 535 ~~m~~s~~~~~f~~~v~~w~~~L~~~~~il~~w~~vQ~~W~~Le~iF~~s~di~~~Lp~e~~~F~~vd~~~~~i~~~~~~ 614 (1949)
++|++|+|+++|+.++..|+.+|..+.++++.|.+||++|+||++||.++ ||+++||.|+++|..+++.|+.+|+++.+
T Consensus 191 ~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~-di~~~lp~e~~~F~~i~~~~~~i~~~~~~ 269 (408)
T PF08393_consen 191 QSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSS-DIKKQLPKEAKKFSSIDKEWRSIMKRAQK 269 (408)
T ss_dssp HHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CHCCCTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHcChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999666 99999999999999999999999999999
Q ss_pred CCceeEeccCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCccccCChhhHHHHHhcCCCCCccCCCCCCch------
Q psy2654 615 TPNVVIGTNKPGLYEKLETIQKDLTKCEKALAQYLETKKLTYPRFYFVSSSDLLDILANGNNPEAFRPGKDGKI------ 688 (1949)
Q Consensus 615 ~p~v~~~~~~~~~~~~L~~~~~~L~~~~k~L~~yLe~kR~~FPRfyFlS~~dlL~ils~~~~p~~~~~~~~~~~------ 688 (1949)
+|+|+.+|..+++.+.|..++..|+.|+|+|.+|||+||..|||||||||+|||+|||++++|..+++|...++
T Consensus 270 ~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyFlsd~eLl~ils~~~~~~~i~~~l~k~F~~i~~l 349 (408)
T PF08393_consen 270 DPNVLSVCSNPDLLEKLESINESLEKIQKSLNDYLESKREAFPRFYFLSDDELLEILSQSKDPEQIQPHLKKCFPGIKSL 349 (408)
T ss_dssp T-CCHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHC-HHHHHHHHHTTTTCHHHHHHHHHCCSSEEEE
T ss_pred CcchhHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceeecCcHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753221
Q ss_pred ----hHHHHHhHhhhcCCccccCCCCCccchhhHHHHHHH-HHHHHHHHHHH
Q psy2654 689 ----NVKIAQGMYAKDGEYVEFNGDCDCSGQANKASTEMI-EMEDVLNKLME 735 (1949)
Q Consensus 689 ----~~~~~~~~~s~~ge~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 735 (1949)
....+.||+|.+||.++|..|+.+.|+++.|+..+. +|...++...+
T Consensus 350 ~~~~~~~~i~~~~s~~gE~~~l~~~v~~~~~ve~WL~~le~~m~~tl~~~~~ 401 (408)
T PF08393_consen 350 EFDENNNSITGMISAEGETLPLDKPVSIEGPVEEWLNELEEEMKSTLKKQIR 401 (408)
T ss_dssp EE-TTSSEEEEEEETTS-EEEEEEEEESSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhhcCCCCCeEEeCCcccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 123478999999999999999999999999998885 46666665443
No 6
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=5e-41 Score=413.92 Aligned_cols=1082 Identities=16% Similarity=0.184 Sum_probs=668.7
Q ss_pred hhhhhhHHHHhhccceeeEeeeccccCccccccHHHHHHHHHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhHHHHHHH
Q psy2654 487 RVAKRTENTYKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQVQLQNMASSKFVGYFQKEVNEWQIKLSNADAVISI 566 (1949)
Q Consensus 487 ~ie~~l~~~~~~w~~~~f~~~~~~~~~~~~l~~~~ei~~~led~~~~l~~m~~s~~~~~f~~~v~~w~~~L~~~~~il~~ 566 (1949)
-++++...+.+.|...+.+ ++|.+-+.+....+-.|.++-+ |+.. .+-+.+|....++-
T Consensus 565 iv~~s~~r~~k~~~e~q~~---------------~~irewc~~~l~~~~~~~~a~~---~e~~-~d~~~~l~~~s~~~-- 623 (3164)
T COG5245 565 IVQLSGIRRAKRCVERQID---------------DEIREWCSSVLSDDFLEERAVR---VERG-ADGARRLRASSGSP-- 623 (3164)
T ss_pred HHHHhhhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH---HHcC-ccHHHHHHhccCCc--
Confidence 4666667777777653221 4555555555556656666555 3333 33444554443322
Q ss_pred HHHHHHHHHHhhhhhcCcHHHHHhhhhhhhhhhhhhHHHHHHHHHHhcCCceeEeccCcchHHHHHHHHHHHHHHHHHHH
Q psy2654 567 WIEVQRTWQHLESIFIGSDDIRQQLPEDSRRFDATDKAFRALAQDMHKTPNVVIGTNKPGLYEKLETIQKDLTKCEKALA 646 (1949)
Q Consensus 567 w~~vQ~~W~~Le~iF~~s~di~~~Lp~e~~~F~~vd~~~~~i~~~~~~~p~v~~~~~~~~~~~~L~~~~~~L~~~~k~L~ 646 (1949)
| -.|..++.+....+||...+|.++.+|......++.|.+++..-...+.....|.. +.|.-..+.++.+..+++
T Consensus 624 ---v-~~~ld~y~~~~~~~dl~~~ip~~~~~~~sl~s~~~~i~~r~~~~~~~i~~i~~~~~-d~l~l~~~~~~~v~~si~ 698 (3164)
T COG5245 624 ---V-LRRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSGCEAINTILEDVG-DDLDLFYKEMDQVFMSIE 698 (3164)
T ss_pred ---H-HHHHHHHHHHhhhhhhcccccHHHHHHHHHHhhhhhhhhhhhcccchhheeeccCC-chHHHHHHHHHHHHHHHH
Confidence 1 56889999998999999999999999999999999999999877766665555554 448999999999999999
Q ss_pred HHHHhhccccCccccCChhhHHHHHhcCCCCCccCCCCCCchhHHHHHhHhhhcCCccccCCCCCccchhhHHHHHHHHH
Q psy2654 647 QYLETKKLTYPRFYFVSSSDLLDILANGNNPEAFRPGKDGKINVKIAQGMYAKDGEYVEFNGDCDCSGQANKASTEMIEM 726 (1949)
Q Consensus 647 ~yLe~kR~~FPRfyFlS~~dlL~ils~~~~p~~~~~~~~~~~~~~~~~~~~s~~ge~v~~~~~~~~~~~~~~~~~~~~~~ 726 (1949)
.+|+..|..||| |+.++||+++++.+++.-. .-+.+..++.++--..-|.+-+.-
T Consensus 699 ~~l~~~~r~~~r--~~~~~~l~~~v~~~~~~~~---------~~~f~~k~~~~~e~~~~~~~~i~~-------------- 753 (3164)
T COG5245 699 KVLGLRWREVER--ASEVEELMDRVRELENRVY---------SYRFFVKKIAKEEMKTVFSSRIQK-------------- 753 (3164)
T ss_pred HHHHHHHHhhhh--hcchHHHHHHHhcccchHH---------HHHHHHHHHhhHHHHHHHHHHhcc--------------
Confidence 999999999999 8999999999998877522 222333333322111111110000
Q ss_pred HHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHHHHHHHhhhhc
Q psy2654 727 EDVLNKLMEQAALFEINKPDFKALANARKDLKMAKLIWDYILVIQGWMLDWKETLWKKIDSEAMDMELKKFTKELRTLDK 806 (1949)
Q Consensus 727 ~~~~~~l~~~~~l~~~~~~~~~~l~~~~~el~~~~~lw~~~~~~~~~~~~w~~~~w~~id~~~~~~~l~~~~~~~~~~~~ 806 (1949)
..-|..+...|...-. +++. ....+|.+.. |-.-+-+
T Consensus 754 ----------~~~~~~~~~~~~~~~~----------l~~~-----~~~~~~in~s--------~~~v~sq---------- 790 (3164)
T COG5245 754 ----------KEPFSLDSEAYVGFFR----------LYEK-----SIVIRGINRS--------MGRVLSQ---------- 790 (3164)
T ss_pred ----------CCCccchHHhhhhhhh----------hHHH-----HHHHHHhhhH--------HHHHHHH----------
Confidence 0001111000100000 0000 0111222211 1000001
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHhhcChhhhhhHHHHHHHhhceeeecCCcccHHH-HHhhhhhhhHHHHHHHHHHH
Q psy2654 807 DLRNWDIFLQLESEIKNMIAALKAVTELQNPAIRDRHWEELMSVTKVKFSIDDSTTLKD-LLDLELYKFEEEVKTIVDKS 885 (1949)
Q Consensus 807 ~~~~~~~~~~l~~~i~~~~~~lp~i~~l~~~~~r~rhW~~l~~~~~~~~~~~~~~tl~~-ll~l~l~~~~~~i~~i~~~a 885 (1949)
|+..+. ++ .+.+...+-.... -+++ +|. -..+.+.
T Consensus 791 -----------------~~~~~~---~~-------------~~~~d~~~~vs~~-~~~~~~l~--~~~~~~~-------- 826 (3164)
T COG5245 791 -----------------YLESVQ---EA-------------LEIEDGSFFVSRH-RVRDGGLE--KGRGCDA-------- 826 (3164)
T ss_pred -----------------HHHHHH---HH-------------hcCCcceEEEeee-ehhhcccc--cccchHH--------
Confidence 111110 00 0000000000000 0000 000 0011111
Q ss_pred HHhHHHHHHHH-HHHHhhcceEEEEEeecccccccccChHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy2654 886 VKEQQMEKVLK-DFDKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQINQLNALIVLLLGELTVGDRQKIMTICTID 964 (1949)
Q Consensus 886 ~~E~~ie~~L~-~~~~~W~~~~f~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~k~~~li~~~ 964 (1949)
.|+.++ .+.+.|..++--+- .. .+-......+++.....+.
T Consensus 827 -----~e~c~~~~~s~y~~~~~~~~~-------------------------~~--------~~~~~d~v~k~l~~~~~~~ 868 (3164)
T COG5245 827 -----WENCFDPPLSEYFRILEKIFP-------------------------SE--------EGYFFDEVLKRLDPGHEIK 868 (3164)
T ss_pred -----HHHhcCchHHHHHHHHHHhcc-------------------------cc--------cccchHHHHHhcCchhhHH
Confidence 122211 22233332211100 00 0111122233444444555
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHhhhhhccccccccchhccchhhhcccccccccCCcceecCchhhHHHHHHHHHHHh
Q psy2654 965 VHSRDVVAKLILQKIESSGAFMWQSQLRHRWDKEVGDCFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLN 1044 (1949)
Q Consensus 965 ~~~rd~~~~l~~~~i~~~~~f~W~~qlr~~~~~~~~~~~i~~~~~~~~y~~Ey~g~~~rlv~tp~~~r~~~~l~~al~~~ 1044 (1949)
.|...++..+....-+...-..|.+-..+|-.- .+.+++........|-|+|.|.+.+++.||+.---+.+|+.|++..
T Consensus 869 ~~~~~ii~~~~~~~~~~~~~l~~~~i~~~~q~l-~~~~~~~~s~y~~~~~f~~~~ip~~~~~~~~~~~~~~~l~~a~~~~ 947 (3164)
T COG5245 869 SRIEEIIRMVTVKYDFCLEVLGSVSISELPQGL-YKRFIKVRSSYRSAEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDE 947 (3164)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHh-hhheEeechhhHHHHHHHhcCCChhheechhhhhhHHHHHHHHHHH
Confidence 555555555544333333444565555444211 1124555567778899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhccccchhhcccCccccccccccchhhHHHHHHHHHHHHH
Q psy2654 1045 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1124 (1949)
Q Consensus 1045 ~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~ 1124 (1949)
++-. +|||||++++.+.+.+|| +| |+++++ +|+..|..+.|+|| +||+++++.-++ .+......++
T Consensus 948 ~c~f----~~t~~s~~~~~~~~~~gr-i~-----d~~~~~--sri~~g~~~~~~~g-~~e~~~lde~~~-~i~~~~~~~~ 1013 (3164)
T COG5245 948 VCRF----VDTENSRVYGMLVAGKGR-IY-----DGTEPR--SRIEAGPICEEERG-TEESALLDEISR-TILVDEYLNS 1013 (3164)
T ss_pred Hhee----cCCCCceeHHHHhcCCCe-ee-----cCCChh--hhhhccceehhhcc-chhHHHHHHHHH-HHhhhHHhcc
Confidence 8554 899999999999999999 32 888888 89999999999999 999999999888 5555566666
Q ss_pred HHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhH
Q psy2654 1125 DSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKF 1204 (1949)
Q Consensus 1125 ~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl 1204 (1949)
+..|....-...+-+.-.+.|++.+|+|+|| |..+|+++|+.||...+..| ...|.+-. ++++.++
T Consensus 1014 ~~~~~~~~~~s~~~e~~~~sp~t~v~~~in~----r~~~~e~~~~a~~~f~~~~p-~g~i~~~~---------~sl~~~i 1079 (3164)
T COG5245 1014 DEFRMLEELNSAVVEHGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR---------ESLDREI 1079 (3164)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCceEEEecc----hhhHHHHHHHHHHHHHhcCC-chhHHHHH---------HHHHHHH
Confidence 7777666666666667788999999999999 78999999999999999999 77777652 7899999
Q ss_pred HHHhhhhhhhcccccccccccchhhheeeecccccc----cchhhHH-----HHHHhHHHHHH-------------HHHH
Q psy2654 1205 ITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKN----WLNNVTD-----SMRRTGIHCMS-------------LAVA 1262 (1949)
Q Consensus 1205 ~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~v~~----wl~~l~~-----~m~~tl~~~~~-------------~~~~ 1262 (1949)
.++........+..+||-| |+++.+++.+.++-. .++.+-+ .+-+||+..+. ....
T Consensus 1080 ~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l~e~~e~~~~i~~~~~lp~i~dtl~e~~~~~da~~~~~~~~s~~~~ 1157 (3164)
T COG5245 1080 GAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMLEEKTEYLNKILSITGLPLISDTLRERIDTLDAEWDSFCRISESLK 1157 (3164)
T ss_pred HHHHHHhhhhhcccchhhh--HHHHHHHhhcchHHHHhhHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHH
Confidence 9999999999999999998 999998887765432 2222211 12233332221 1111
Q ss_pred hhcCCCch--------hhhhcCC-cchhh------hcchhhhhhHHH---------------------------------
Q psy2654 1263 AYDEKPRE--------QWLFDYP-GQTAL------CGTQIWWTTEVS--------------------------------- 1294 (1949)
Q Consensus 1263 ~~~~~~~~--------~w~~~~p-~Qv~l------~~~qi~wt~~i~--------------------------------- 1294 (1949)
.++...+. .++...- +|... ++---.||+.+.
T Consensus 1158 ~~~s~q~sg~~~a~f~~f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~~h~~~~yv~~~~~~a~~e~r~~f~~~~r~d~ 1237 (3164)
T COG5245 1158 KYESQQVSGLDVAQFVSFLRSVDTGAFHAEYFRVFLCKIKHYTDACDYLWHVKSPYVKKKYFDADMELRQFFLMFNREDM 1237 (3164)
T ss_pred HHhhccccCccHHHHHHHHHHhhhcHHHHHHHHHhhcccchhhhhhccccccCchhhHHHHhhhhHHHHHHHHHHhHHhh
Confidence 11111111 1111100 01000 000001111110
Q ss_pred -HHH---------HHHHHHHH-----------------------------------------------------------
Q psy2654 1295 -ICF---------ARLEEGYE----------------------------------------------------------- 1305 (1949)
Q Consensus 1295 -~~~---------~~~~~~~~----------------------------------------------------------- 1305 (1949)
..+ +.--++..
T Consensus 1238 ~~~~~~s~~~~~~~~yve~~~a~~~~~kl~~~~~ge~~v~~~nl~s~~~~v~rc~~~~ds~~~~St~~~~~~~lg~T~~~ 1317 (3164)
T COG5245 1238 EARLADSKMEYEVERYVEKTKAEVSSLKLELSSVGEGQVVVSNLGSIGDKVGRCLVEYDSISRLSTKGVFLDELGDTKRY 1317 (3164)
T ss_pred hhhhccceEEEehHHHHHHHHhhhccceeeeccCCCceEEEeeCCCccchhheeeeeecccchhccchhhHHhhccchhh
Confidence 000 00000000
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q psy2654 1306 ---------------------------------------------------------------------------NALKD 1310 (1949)
Q Consensus 1306 ---------------------------------------------------------------------------~~l~~ 1310 (1949)
..+++
T Consensus 1318 Ld~~ld~fs~~~~~~~~~de~~m~~~a~~~~fs~dl~hI~~~rrF~~~~~~~~~s~~l~~~s~~~~~~L~~K~l~~~mk~ 1397 (3164)
T COG5245 1318 LDECLDFFSCFEEVQKEIDELSMVFCADALRFSADLYHIVKERRFSGVLAGSDASESLGGKSIELAAILEHKDLIVEMKR 1397 (3164)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhhhhhHhHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 00000
Q ss_pred h--------------c----------------------------------------------------------------
Q psy2654 1311 Y--------------N---------------------------------------------------------------- 1312 (1949)
Q Consensus 1311 ~--------------~---------------------------------------------------------------- 1312 (1949)
. .
T Consensus 1398 ~I~~vL~~~~~gD~~~es~~rf~~~~~~~~~~dl~e~sdye~~~i~~f~is~~~~~~~~Iag~~l~~~~vm~~~~vVipt 1477 (3164)
T COG5245 1398 GINDVLKLRIFGDKCRESTPRFYLISDGDLIKDLNERSDYEEMLIMMFNISAVITNNGSIAGFELRGERVMLRKEVVIPT 1477 (3164)
T ss_pred HHHHHHHHHHhcCcccccchhHHHhhhhhhhhccchhhhhHHHHHhhcccceEeecccccCCceechhhhcccCCeeccc
Confidence 0 0
Q ss_pred -----------------cceEEEeccCCCchHHHHHHHHHHHhccCCCcccccccccccccc-hhcccccccceeecCcc
Q psy2654 1313 -----------------KKQFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDE-LFGIINPSTREWKDGRY 1374 (1949)
Q Consensus 1313 -----------------~~~~lv~~~~~gk~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-l~~~~~~~~~~w~d~~~ 1374 (1949)
...+.-||+|+||+.+..-....-.. .-+..+|-+..+... ....+..++-+...
T Consensus 1478 ~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~----~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~--- 1550 (3164)
T COG5245 1478 SDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELI----TEVKYFNFSTCTMTPSKLSVLERETEYYPN--- 1550 (3164)
T ss_pred ccchhHHHHHHHHHhccceEEEECCCCCccchhcchhhhhhhh----eeeeEEeeccccCCHHHHHHHHhhceeecc---
Confidence 00012233334443321110000000 000001111111110 11111112222211
Q ss_pred ccCCccccccccCcceEeeccceeccccccccCCCCccccccchH--HHHHHHHHHHhccCCCCCCCCCCChhHH-HHHH
Q psy2654 1375 SDSGFLSYGSLLGDCFANICDAEFKFDHEYLGCTPRLVITPLTDR--CYITLSQSLHLNMGGAPAGPAGTGKTET-TKDL 1451 (1949)
Q Consensus 1375 ~~~~~~~~~~~~~~~~v~~~~~~~~y~~ey~g~~~~~v~t~~t~r--~~~~l~~al~~~~~~~l~G~~g~GKt~~-v~~l 1451 (1949)
+.-.+++..+..++.+.=+..-.+|||++|...+--...-|+++| .+..+......-.+..++|..|.|++.- ++.-
T Consensus 1551 tg~~~l~PK~~vK~lVLFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~ 1630 (3164)
T COG5245 1551 TGVVRLYPKPVVKDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYY 1630 (3164)
T ss_pred CCeEEEccCcchhheEEEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccH
Confidence 111223333444444444445579999999876655555599999 8999999999999999999999999998 9999
Q ss_pred HHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhh
Q psy2654 1452 GKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAG 1531 (1949)
Q Consensus 1452 a~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1531 (1949)
.+.+++|+++|.|.+ ...+|.+++. +.--|+.+|+|||+++..+..++-...+...+
T Consensus 1631 eRf~r~~v~vf~~yp--e~~SL~~Iye-a~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k-------------------- 1687 (3164)
T COG5245 1631 ERFIRKPVFVFCCYP--ELASLRNIYE-AVLMGSYLCFDEFNRLSEETMSASVELYLSSK-------------------- 1687 (3164)
T ss_pred HHHhcCceEEEecCc--chhhHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 999999999999955 4567888887 77778999999999999998887655543332
Q ss_pred hcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhccc
Q psy2654 1532 LAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFR 1611 (1949)
Q Consensus 1532 ~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr 1611 (1949)
.++..|.+||-+|.+| +||..|++.|.
T Consensus 1688 ----------------------------------------------------~~~k~~lq~~y~y~pR-eLtR~lr~i~~ 1714 (3164)
T COG5245 1688 ----------------------------------------------------DKTKFFLQMNYGYKPR-ELTRSLRAIFG 1714 (3164)
T ss_pred ----------------------------------------------------HhhhhhcccccccChH-HHHHHHHHHHh
Confidence 2456788999999999 99999999998
Q ss_pred --ccccccCCHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHhhcccccCCCCCcHHHH
Q psy2654 1612 --PCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQV 1689 (1949)
Q Consensus 1612 --~v~~~~pD~~~i~e~~L~~~gf~~~~~la~k~~~~~~~~~~~~s~~~~~~~~lr~l~~vl~~a~~~~~~~~~~~e~~~ 1689 (1949)
+-....||...|.--+.-+. +.++.+++.-. ...-+.|.+|++++|.+.... +| ...|..+
T Consensus 1715 yaeT~~~t~~~slI~~wy~ea~-----r~~~dRLV~qk---E~st~~q~ly~~~~~~~~e~~--~g-------~i~e~~I 1777 (3164)
T COG5245 1715 YAETRIDTPDVSLIIDWYCEAI-----REKIDRLVQQK---ESSTSRQDLYDFGLRAIREMI--AG-------HIGEAEI 1777 (3164)
T ss_pred HHhcCCCCCcHHHHHHHHHHHH-----HHHHHHHHHHH---hcchHHHHHHHHHHHhhhhhh--hc-------ccchhhh
Confidence 77888999998876665322 33333333321 122346788999998887543 11 1234455
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHhHhccCCCCCCCCCCchhHHHHHHHHHHhcCCCcChHHHHHHHHHHHHHhcC-cEEE
Q psy2654 1690 LMRALRDFNIPKIITEDLQVFMGLIGDLFPALDVPRKRDIDFEKQVRQATIDMKLQPEDSFILKVVQLVELFAVR-HSVF 1768 (1949)
Q Consensus 1690 l~~a~~~~~~~~l~~~d~~~~~~l~~~~fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~l~~~l~~~-~~vl 1768 (1949)
+...+..+-+..+...|...|-+-....|....+. ..++..++.+..++...+++.+- -.-|
T Consensus 1778 ~fS~Il~~g~~~l~k~dl~~fvEe~~K~F~sshl~-----------------v~~V~~~~~l~HiLr~~R~l~~vggh~~ 1840 (3164)
T COG5245 1778 TFSMILFFGMACLLKKDLAVFVEEVRKIFGSSHLD-----------------VEAVAYKDALLHILRSRRGLLVVGGHGV 1840 (3164)
T ss_pred hHHHHHhccHHHHhhhhHHHHHHHHHHHhcccCCC-----------------CceeeeHHHHHHHHHHHHHHHHhccchh
Confidence 55555555466677777776665555556533221 23455667778888888877654 3467
Q ss_pred EEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEEEEcC
Q psy2654 1769 IIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWMVMDG 1848 (1949)
Q Consensus 1769 l~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg 1848 (1949)
+.|..|.||+-+.+..+ - +||-. +-|++|.-+..+++|.|.+.+..++.+.. .....|+|+|+
T Consensus 1841 l~g~~~~g~~~~~efvc-w------------lN~~~--m~e~~~hr~~~~~Df~d~lk~~~~~~~~~--~~r~Cl~I~Es 1903 (3164)
T COG5245 1841 LKGVLIRGACDAREFVC-W------------LNPRN--MREIFGHRDELTGDFRDSLKVQDLRRNIH--GGRECLFIFES 1903 (3164)
T ss_pred hhhhhhhhhHHHHHHHH-H------------hCccc--hhhhhcccccchhhHHHHHHHHHHhcccc--CCceEEEEecC
Confidence 88999999998887766 2 44443 44899998888899999999999887643 23348999998
Q ss_pred -CCCccchhhHHhhhcCCcceeccCC-ceeecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1849 -DIDPMWIESLNTVMDDNKVLTLASN-ERIALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1849 -~~d~~w~e~ln~~lddn~~l~l~~g-e~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
++.+.|+|.||.+||.|+.++|.+| |++.+|.|.|.+||.+.|...||+|+.|.-|+||..
T Consensus 1904 i~~es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~~~es~~L~~dTe~tlt~vFl~~~~~ 1966 (3164)
T COG5245 1904 IPVESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEE 1966 (3164)
T ss_pred CccchHHHHHhhhhhhccccchhccchhHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999 899999999999999999999999999988877653
No 7
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=2.1e-33 Score=353.60 Aligned_cols=401 Identities=23% Similarity=0.383 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHh
Q psy2654 749 ALANARKDLKMAKLIWDYILVIQGWMLDWKETLWKKIDSEAMDMELKKFTKELRTLDKDLRNWDIFLQLESEIKNMIAAL 828 (1949)
Q Consensus 749 ~l~~~~~el~~~~~lw~~~~~~~~~~~~w~~~~w~~id~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l 828 (1949)
.|..+.++++++..+|..+..|....+.|..++|.++|++.++..++.+.+.+.++++.++.++++..++..|++|..++
T Consensus 2 ~L~~l~~~l~~~~~lW~~~~~~~~~~~~w~~~~~~~ld~~~l~~~v~~~~~~l~~l~~~~~~~~v~~~l~~~i~~f~~~l 81 (408)
T PF08393_consen 2 ELEELEKELEPLKKLWSLISEWQEQLEEWMNTPFSDLDVEELEEEVEEFLKQLRKLPKSLREWPVYKELKKKIEEFKKYL 81 (408)
T ss_dssp -------------------------HHHHHH--TTT-----------------------------HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcCHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHhc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcChhhhhhHHHHHHHhhc-eeeecCCcccHHHHHhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcceEE
Q psy2654 829 KAVTELQNPAIRDRHWEELMSVTK-VKFSIDDSTTLKDLLDLELYKFEEEVKTIVDKSVKEQQMEKVLKDFDKVWSTLEF 907 (1949)
Q Consensus 829 p~i~~l~~~~~r~rhW~~l~~~~~-~~~~~~~~~tl~~ll~l~l~~~~~~i~~i~~~a~~E~~ie~~L~~~~~~W~~~~f 907 (1949)
|++..|++|+|++|||.+|++++| .++ ++.++|+++++++++..|.+.|.+|+..|.+|..+|+.|++|...|.+++|
T Consensus 82 pli~~L~~~~mk~rHW~~l~~~~g~~~~-~~~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~f 160 (408)
T PF08393_consen 82 PLIQDLRNPAMKPRHWKQLFQILGIQDF-PNESLTLQDLLDLGLLDHEDKIEEISEQAQKEYKIEQSLEKIKEEWKNMEF 160 (408)
T ss_dssp HHHHHTTSTT--CHHHHHHHHCTT------TTS-SHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-B-
T ss_pred HHHHHhcCccchHHHHHHHHHHhccccc-ccccccHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcee
Confidence 999999999999999999999999 888 788999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccccccChHHHHHHHHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q psy2654 908 EYDIHARTKTPLLRCSEELIEMLEENQINQLNALIVLLLGE----LTVGDRQKIMTICTIDVHSRDVVAKLILQKIESSG 983 (1949)
Q Consensus 908 ~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~l~~l~~~~~~~----l~~~~~~k~~~li~~~~~~rd~~~~l~~~~i~~~~ 983 (1949)
++.+++..+.+++++.++++..++|++..+.+...+++.++ +..++.+......+++.|...+..|++.+++|+++
T Consensus 161 ~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~ 240 (408)
T PF08393_consen 161 EFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSS 240 (408)
T ss_dssp EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred eeeccccchhheecchHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999998889999999999999999998887665555444 44566666667778999999999999999999986
Q ss_pred hhHHHhhhhhccccccccchhccchhhhcccccccccCCcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHH
Q psy2654 984 AFMWQSQLRHRWDKEVGDCFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKD 1063 (1949)
Q Consensus 984 ~f~W~~qlr~~~~~~~~~~~i~~~~~~~~y~~Ey~g~~~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~ 1063 (1949)
++ +++| |...+.|..+...++..+..+..-|
T Consensus 241 di--~~~l------------------------------------p~e~~~F~~i~~~~~~i~~~~~~~~----------- 271 (408)
T PF08393_consen 241 DI--KKQL------------------------------------PKEAKKFSSIDKEWRSIMKRAQKDP----------- 271 (408)
T ss_dssp CH--CCCT------------------------------------HHHHHHHHHHHHHHHHHHHHHHCT------------
T ss_pred hH--HHHH------------------------------------HHHHHHHHHcChHHHHHHHHHHhCc-----------
Confidence 44 2222 3333444444444443333222111
Q ss_pred HHHhhcceEEEeeCCccchhhhccccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCcccc
Q psy2654 1064 LGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKL 1143 (1949)
Q Consensus 1064 la~~lg~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l 1143 (1949)
+++..+...+ +.+.+..+ .+.|..|.+.|..+++.+|..||||||+|++..+
T Consensus 272 ------------------------~v~~~~~~~~---~~~~l~~~-~~~l~~i~k~L~~~Le~kR~~FPRfyFlsd~eLl 323 (408)
T PF08393_consen 272 ------------------------NVLSVCSNPD---LLEKLESI-NESLEKIQKSLNDYLESKREAFPRFYFLSDDELL 323 (408)
T ss_dssp ------------------------CCHHHCCSTT---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSCCHHHC-HHHHH
T ss_pred ------------------------chhHHhhHhh---HHHHHHHH-HHHHHHHHHHHhHHHHHHHhhccceeecCcHHHH
Confidence 1111111111 11111111 2778999999999999999999999999987554
Q ss_pred ccccceeeecCCCCCCCCCCchhHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhccccccccc
Q psy2654 1144 VTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDW 1223 (1949)
Q Consensus 1144 ~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~ 1223 (1949)
..-.. ..++..+.++++++|.+|.-...+...- .+.++.+..||.++
T Consensus 324 ~ils~--------~~~~~~i~~~l~k~F~~i~~l~~~~~~~------------------~i~~~~s~~gE~~~------- 370 (408)
T PF08393_consen 324 EILSQ--------SKDPEQIQPHLKKCFPGIKSLEFDENNN------------------SITGMISAEGETLP------- 370 (408)
T ss_dssp HHHHT--------TTTCHHHHHHHHHCCSSEEEEEE-TTSS------------------EEEEEEETTS-EEE-------
T ss_pred HHHHc--------CCChHHHHHHHHHHHHHHHHHHhccchh------------------hhhhhcCCCCCeEE-------
Confidence 32211 1234688999999999998776543210 13444455555555
Q ss_pred ccchhhheeeecccccccchhhHHHHHHhHHHHHHHHHHhh
Q psy2654 1224 GLRAIKSVLVVAGSLKNWLNNVTDSMRRTGIHCMSLAVAAY 1264 (1949)
Q Consensus 1224 glr~~~~v~~~~g~v~~wl~~l~~~m~~tl~~~~~~~~~~~ 1264 (1949)
+...+.+.|+++.||+.++.+|+.|++..+..|+..|
T Consensus 371 ----l~~~v~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~y 407 (408)
T PF08393_consen 371 ----LDKPVSIEGPVEEWLNELEEEMKSTLKKQIRKCLEDY 407 (408)
T ss_dssp ----EEEEEESSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----eCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567889999999999999999999999999998876
No 8
>KOG1808|consensus
Probab=99.96 E-value=3.7e-29 Score=333.85 Aligned_cols=475 Identities=17% Similarity=0.204 Sum_probs=331.9
Q ss_pred CCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccc-------
Q psy2654 1408 TPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGL------- 1480 (1949)
Q Consensus 1408 ~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~------- 1480 (1949)
.. +..|.+..+.+..+..++.++.+++++|.||+|||+.++.+|...|..+.++|.+.+.+...+-.-++-+
T Consensus 43 ~~-fa~t~~~~~l~~~~~~~v~~~ep~ll~g~tgvgkt~~~Q~~a~~~g~~l~vv~~~~~~~~s~~l~g~k~v~~~~~~p 121 (1856)
T KOG1808|consen 43 ST-FAFTRSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVVNVSQQSDSSDLLGGYKPVNDYLSLP 121 (1856)
T ss_pred cc-ccccchHHHHHHHHHHHHhcCCccccccccCCCcchHhHhhhhccceeeeeeeecccCCCCcccccccchhheeecc
Confidence 44 9999999999999999999999999999999999999999999999999999999987755442222111
Q ss_pred cccCccccc-----cccccccchhhHHH--------------------HH------------HHHHHHHHHHhhhccccc
Q psy2654 1481 AQTGAWGCF-----DEFNRISVEVLSVV--------------------AV------------QVKSVLDSVKMRKSRFNF 1523 (1949)
Q Consensus 1481 ~~~g~w~~~-----de~~~l~~~~ls~~--------------------~~------------~~~~i~~~~~~~~~~~~~ 1523 (1949)
.+.-.|-.+ +..+.-..+.++.. .. ..+.+...+.... +.|
T Consensus 122 l~~~~~~i~~~t~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~~~~--~~f 199 (1856)
T KOG1808|consen 122 LSKPFEKIFNLTFLLKKNQKFIKNASRCLSSGRHKDLISLMIEICSKAELNPNPMKRAELEMRLQKIEQQLEKGE--ALF 199 (1856)
T ss_pred cchHHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHHHHHHHHHHHHHhcCcchhhccchhhHHHHHhhhhhhhh--hhh
Confidence 111111111 11111111111100 00 0001111111111 344
Q ss_pred -cccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCC-CCCCCCC
Q psy2654 1524 -MGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAE 1601 (1949)
Q Consensus 1524 -~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp-~~~g~~~ 1601 (1949)
+..+.+.....+|+|.+.|++|+++++++..+.+.+.. ...+...++.+ ..+..||+|++|+|||| +..|+..
T Consensus 200 ~~~~g~~~~~~~~g~w~lldeinla~~~~l~~i~~vl~~-~~i~l~e~~d~----~~l~~hp~f~~f~cmnp~td~gK~~ 274 (1856)
T KOG1808|consen 200 VFVPGALVETISNGEWLLLDEINLASAETLELISQVLGK-CSILLSERGDY----TPLKIHPNFRIFACMNPATDVGKRD 274 (1856)
T ss_pred hhchhhHHHHHhccchhhhhhhccchHHHHHHHHHhccC-ceeeccccccc----cccCCCcchhhhhccCccchhhhhh
Confidence 66778889999999999999999999999999988876 22222222222 45789999999999999 6899999
Q ss_pred ChhhHhhcccccccccCCHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcC--CCCCCCchhhHHHHHHhhccccc
Q psy2654 1602 LPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSK--QDHYDWGLRAIKSVLVVAGSLKR 1679 (1949)
Q Consensus 1602 LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~la~k~~~~~~~~~~~~s~--~~~~~~~lr~l~~vl~~a~~~~~ 1679 (1949)
+|..++++|+.+++..+....-........-+........+++.+|...+..... ....-+++|++++.|+.......
T Consensus 275 l~~~~r~~~te~~v~~~~~~~~~~l~~~~~~~~i~~e~v~~~~e~~~~~k~~~~~dg~~~~~~s~r~l~raL~~v~~~~~ 354 (1856)
T KOG1808|consen 275 LKPGKRNRFTEFSVHTSLEDADLSLSVVDKYIAISSEPVRNIVELYLSAKSLSLVDGNQRPLYSIRTLCRALRIVLDSLP 354 (1856)
T ss_pred cCcchhcceEEEEEechhhhhhhhhhhhccccccchhhHHhHHHHhhhccccccccccccchhhhhhHHHHHHHHHHhhh
Confidence 9999999999999987754432222211111123334444577777766655411 11223678999999887654433
Q ss_pred CCCCCcHHHHHHHHHhhhcCCCCCcccHHHHHHhHhccCC-CCCCCCCCchhHHHHHHH-----HHHhcCCCcChHHHHH
Q psy2654 1680 GDRQRPEDQVLMRALRDFNIPKIITEDLQVFMGLIGDLFP-ALDVPRKRDIDFEKQVRQ-----ATIDMKLQPEDSFILK 1753 (1949)
Q Consensus 1680 ~~~~~~e~~~l~~a~~~~~~~~l~~~d~~~~~~l~~~~fp-~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~k 1753 (1949)
...+ .-++.+++..+...+..........++...+- ..+.|... .+...... .-....+..++.....
T Consensus 355 ~~~~----~slyE~~~~sflt~le~~s~~~~~~l~~~~~~~~~q~P~~~--~~~~~~i~~gs~~~~~~~~~i~T~~vq~~ 428 (1856)
T KOG1808|consen 355 AEVD----RSLYEAFCMSFLTQLEGESHKRLVKLIQRALLITKQVPASP--RFEGYWIPSGSELTSEATHYIITPRVQKN 428 (1856)
T ss_pred hhhh----cchHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccCCCCc--ccceeecCCCCccccccceeeccHHHHHH
Confidence 3332 34788888888888877777777777665442 11222211 11110000 0001236667776667
Q ss_pred HHHHHHHHhcC-cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCC---cccChHHHH
Q psy2654 1754 VVQLVELFAVR-HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTRE---WKDGLFSCL 1829 (1949)
Q Consensus 1754 ~~~l~~~l~~~-~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~---w~dG~l~~~ 1829 (1949)
...+.++...+ .+++|.||+|||||++++.||+++ ++...+++|+.+.+.++|.|.|..+.++ |++|+++.+
T Consensus 429 la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~----g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~A 504 (1856)
T KOG1808|consen 429 LADLARAISSGKFPILLQGPTSSGKTSIIKELARAT----GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQA 504 (1856)
T ss_pred HHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHh----ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHH
Confidence 77777777766 699999999999999999999988 4445566788889999999965544443 999999999
Q ss_pred HHHHhhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC-------CCChhhhc
Q psy2654 1830 IREQAQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR-------TATPATVS 1900 (1949)
Q Consensus 1830 ~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~-------~asPa~vs 1900 (1949)
+|+| .|+||||. +.+..+|.||+++||||.|.+|+|.|..-|+..+++|-|++.. ..|-|..+
T Consensus 505 lr~G--------~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~ 576 (1856)
T KOG1808|consen 505 LRNG--------DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN 576 (1856)
T ss_pred HHhC--------CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc
Confidence 9999 99999984 4788999999999999999999999999999999999999876 36777777
Q ss_pred cceEEEec
Q psy2654 1901 RAGILYIN 1908 (1949)
Q Consensus 1901 r~~~v~~~ 1908 (1949)
|...+++.
T Consensus 577 rf~e~~f~ 584 (1856)
T KOG1808|consen 577 RFIELHFD 584 (1856)
T ss_pred cchhhhhh
Confidence 87777765
No 9
>KOG1808|consensus
Probab=99.95 E-value=1.4e-27 Score=318.99 Aligned_cols=692 Identities=17% Similarity=0.166 Sum_probs=428.2
Q ss_pred ceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccch---------------------
Q psy2654 1024 LVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD--------------------- 1082 (1949)
Q Consensus 1024 lv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~--------------------- 1082 (1949)
+..|-...+.+..+...+..+-++...|-+|+|||+.+..+|...|....++|-+...|
T Consensus 45 fa~t~~~~~l~~~~~~~v~~~ep~ll~g~tgvgkt~~~Q~~a~~~g~~l~vv~~~~~~~~s~~l~g~k~v~~~~~~pl~~ 124 (1856)
T KOG1808|consen 45 FAFTRSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVVNVSQQSDSSDLLGGYKPVNDYLSLPLSK 124 (1856)
T ss_pred ccccchHHHHHHHHHHHHhcCCccccccccCCCcchHhHhhhhccceeeeeeeecccCCCCcccccccchhheeecccch
Confidence 66788888889999999999999999999999999999999999999988888866554
Q ss_pred --------------------------------------------------------------------------hhhccc
Q psy2654 1083 --------------------------------------------------------------------------YRSCGN 1088 (1949)
Q Consensus 1083 --------------------------------------------------------------------------~~~~~~ 1088 (1949)
+.....
T Consensus 125 ~~~~i~~~t~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~~~~~~f~~~~g 204 (1856)
T KOG1808|consen 125 PFEKIFNLTFLLKKNQKFIKNASRCLSSGRHKDLISLMIEICSKAELNPNPMKRAELEMRLQKIEQQLEKGEALFVFVPG 204 (1856)
T ss_pred HHHHHHHHHHHHHhhhccchhhHHHhhhhHHHHHHHHHHHHHHHHhcCcchhhccchhhHHHHHhhhhhhhhhhhhhchh
Confidence 011122
Q ss_pred cchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCC-CCCCCCCCchhH
Q psy2654 1089 IYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENL 1167 (1949)
Q Consensus 1089 ~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~-~~~~~~~lp~~l 1167 (1949)
.+.-+...|.|..+|++|.++.+.|..+.+.+.. ....-.-+=.-+.+..++++.+|..||| +..|+..+|...
T Consensus 205 ~~~~~~~~g~w~lldeinla~~~~l~~i~~vl~~-----~~i~l~e~~d~~~l~~hp~f~~f~cmnp~td~gK~~l~~~~ 279 (1856)
T KOG1808|consen 205 ALVETISNGEWLLLDEINLASAETLELISQVLGK-----CSILLSERGDYTPLKIHPNFRIFACMNPATDVGKRDLKPGK 279 (1856)
T ss_pred hHHHHHhccchhhhhhhccchHHHHHHHHHhccC-----ceeeccccccccccCCCcchhhhhccCccchhhhhhcCcch
Confidence 3344567789999999999999999998877765 1100000001134667899999999999 456999999999
Q ss_pred hhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhhheeeecccccccchhhHH
Q psy2654 1168 KALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKNWLNNVTD 1247 (1949)
Q Consensus 1168 ~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~v~~wl~~l~~ 1247 (1949)
+..|+.+++..+....-........-+.-.......++.+|.....+. ...|..+.|... .
T Consensus 280 r~~~te~~v~~~~~~~~~~l~~~~~~~~i~~e~v~~~~e~~~~~k~~~-----------------~~dg~~~~~~s~--r 340 (1856)
T KOG1808|consen 280 RNRFTEFSVHTSLEDADLSLSVVDKYIAISSEPVRNIVELYLSAKSLS-----------------LVDGNQRPLYSI--R 340 (1856)
T ss_pred hcceEEEEEechhhhhhhhhhhhccccccchhhHHhHHHHhhhccccc-----------------cccccccchhhh--h
Confidence 999999999988766555544444433111222222555555433322 111222222111 1
Q ss_pred HHHHhHHHHHHHHHHhhcCCCchhhhhcCCcchhhhcchhhhhhHHHHHHHHHHHHHHHHHHHhccceEEEeccCCCchH
Q psy2654 1248 SMRRTGIHCMSLAVAAYDEKPREQWLFDYPGQTALCGTQIWWTTEVSICFARLEEGYENALKDYNKKQFIIGFAGTGKSC 1327 (1949)
Q Consensus 1248 ~m~~tl~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~i~~~~~~~~~~~~~~l~~~~~~~~lv~~~~~gk~~ 1327 (1949)
...++|+.+....-........+..+..++.|.- ..-. .
T Consensus 341 ~l~raL~~v~~~~~~~~~~slyE~~~~sflt~le--------------------~~s~---------------------~ 379 (1856)
T KOG1808|consen 341 TLCRALRIVLDSLPAEVDRSLYEAFCMSFLTQLE--------------------GESH---------------------K 379 (1856)
T ss_pred hHHHHHHHHHHhhhhhhhcchHHHHHHHHHHhcc--------------------hHHH---------------------H
Confidence 1222222222211111111111111111111000 0000 0
Q ss_pred HHHHHHHHHHhccCCCcccccccccccccchhcccccccceeecCccccCCccccccccCcceEeeccceeccccccccC
Q psy2654 1328 VWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGRYSDSGFLSYGSLLGDCFANICDAEFKFDHEYLGC 1407 (1949)
Q Consensus 1328 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~w~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~y~~ey~g~ 1407 (1949)
+...+...... . + ... |... ++.++.++-|-+....
T Consensus 380 ~~~~l~~~~~~-~-------------~------~q~--------------------P~~~----~~~~~~i~~gs~~~~~ 415 (1856)
T KOG1808|consen 380 RLVKLIQRALL-I-------------T------KQV--------------------PASP----RFEGYWIPSGSELTSE 415 (1856)
T ss_pred HHHHHHHHHHH-h-------------c------ccC--------------------CCCc----ccceeecCCCCccccc
Confidence 00111111100 0 0 000 0001 4566677778888888
Q ss_pred CCCccccccchHHHHHHHHHHHhc-cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhh-hcccccccCc
Q psy2654 1408 TPRLVITPLTDRCYITLSQSLHLN-MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGN-IYKGLAQTGA 1485 (1949)
Q Consensus 1408 ~~~~v~t~~t~r~~~~l~~al~~~-~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~-~~~g~~~~g~ 1485 (1949)
...+|+||...+....+++|...+ .+.+|.||+|+|||+++++||+.+|+.++.+|.++++|.+.+.+ ++.-...
T Consensus 416 ~~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g--- 492 (1856)
T KOG1808|consen 416 ATHYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNG--- 492 (1856)
T ss_pred cceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCC---
Confidence 899999999999999999999998 56668999999999999999999999999999999999887544 3211100
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhh
Q psy2654 1486 WGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDS 1565 (1949)
Q Consensus 1486 w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~ 1565 (1949)
=.-+-+|.+++++++|.|+.+|++|++++++|.+++..+....
T Consensus 493 -----------------------------------~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnR-- 535 (1856)
T KOG1808|consen 493 -----------------------------------DLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNR-- 535 (1856)
T ss_pred -----------------------------------CeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhc--
Confidence 0124567888999999999999999999999998887765533
Q ss_pred hhhccccceec-cceEEEecCeeEEEEeCC--CCCCCCCChhhHhhccccccccc---CCHHHHHHHHHhhhchhhHHHH
Q psy2654 1566 VKMRKSRFNFM-GENIKLVTTVGMFITMNP--GYAGRAELPENLKALFRPCAMVV---PDFALICEIMLVSEGFQEARLL 1639 (1949)
Q Consensus 1566 l~~~~~~~~~~-~~~i~~~~~~~~f~tmnp--~~~g~~~LP~~lk~~fr~v~~~~---pD~~~i~e~~L~~~gf~~~~~l 1639 (1949)
+-+..+ .+.++.||+|++|+|.|| .|+||+.+..+|+++|-++.+.. +.+..|.+. +-..++.+
T Consensus 536 -----el~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~-----~~~i~~~~ 605 (1856)
T KOG1808|consen 536 -----ELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELEEILEH-----RCGIPPSY 605 (1856)
T ss_pred -----cccccccceeeccCcchhhhhhccCccccchhhhhhhcccccchhhhhhhcCchhhhhhhcc-----cccCCchH
Confidence 333334 467999999999999999 49999999999999998876632 222222222 22346678
Q ss_pred HHHHHHHHHHHHH--HhcCCCCCCCchhhHHHHHHhhcccc----cCCCCCcHHHHHHHHHhhhcCCCCCcccHHHHHHh
Q psy2654 1640 SRKFITLYSLCKE--LLSKQDHYDWGLRAIKSVLVVAGSLK----RGDRQRPEDQVLMRALRDFNIPKIITEDLQVFMGL 1713 (1949)
Q Consensus 1640 a~k~~~~~~~~~~--~~s~~~~~~~~lr~l~~vl~~a~~~~----~~~~~~~e~~~l~~a~~~~~~~~l~~~d~~~~~~l 1713 (1949)
+++++..|.-.+. +++.-.+..-++-+++...+.+...- -......+.-+.+-|-+. ....+......-
T Consensus 606 ~~k~~~~~~~L~~~rqls~i~e~~~~~gtlrd~f~w~~r~~e~~~~~~~~l~~~g~~~L~~r~-----r~~~~~~~v~~~ 680 (1856)
T KOG1808|consen 606 EKKMVQVMRELSLRRQLSRIFEQKPSFGTLRDLFRWLLRFTETIAESNDQLAENGYMLLSSRQ-----RYEKEKRLVQQP 680 (1856)
T ss_pred HHHHHHHhhhhhhHHHHhhHHHhccccCCcHHHHHHHhhccccccchhhhhhhhhHHHhhhhh-----hccchhhhhhcc
Confidence 8888888866433 33311111112222233333332211 010000111111111111 111122221111
Q ss_pred HhccCCCCCCCCCCchhHHHHHHHHHHhcCCCcChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC
Q psy2654 1714 IGDLFPALDVPRKRDIDFEKQVRQATIDMKLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK 1793 (1949)
Q Consensus 1714 ~~~~fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~ 1793 (1949)
....+.+++...+... ..++....-...-..++.....+ ++|++||||||+..+++....
T Consensus 681 -------------~e~~~~~~~~~~~l~~--~~t~~m~r~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---- 740 (1856)
T KOG1808|consen 681 -------------LEKVMRKAVDKDQLST--VWTPGMTRLTIEKALVLAIKEQV-LVGLTGCGDTTVCQILAEKSG---- 740 (1856)
T ss_pred -------------chhhhHHHHHHHHHHh--hcchhhhhhhhhHHHHHHhhcch-hcccccccchhhhhhhhhccc----
Confidence 1112333333333222 23344444344444566677788 999999999999999987652
Q ss_pred CCcccccCCCccC------------ccccccccc---CCCCCcccChHHHHHHHHhhcCCCCCcEEEEcCC--CCccchh
Q psy2654 1794 KPMYNDLEPKAVT------------NDELFGIIN---PSTREWKDGLFSCLIREQAQSTGDGPKWMVMDGD--IDPMWIE 1856 (1949)
Q Consensus 1794 ~~~~~~i~p~~~~------------~~el~G~~~---~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e 1856 (1949)
...++++-...+ .+...|.-+ .+..+|.||+|+.+|+.| +-++.|-. .+.+..|
T Consensus 741 -~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ew~dglLi~a~~~G--------~~~l~Dei~la~dsvle 811 (1856)
T KOG1808|consen 741 -VALRILNAHEHTEAQRPNVLFRENLQHDEIREDKMLKDLFEWSDGLLIGAQGVG--------KQFLVDEISLAEDSVLE 811 (1856)
T ss_pred -ceeeeehhhhhhhhccccccccccchhhHhhhhhhhhccccccCccchhhhhcc--------chhhhhccccchhhHHH
Confidence 122222222222 223344433 344579999999999998 55777843 3677899
Q ss_pred hHHhhhcCCcceeccC-----CceeecCCCceEEEEeCCCCC------CChhhhccceEEEecC
Q psy2654 1857 SLNTVMDDNKVLTLAS-----NERIALTPSMRLLFEISNLRT------ATPATVSRAGILYINP 1909 (1949)
Q Consensus 1857 ~ln~~lddn~~l~l~~-----ge~i~~~~~~~~ifE~~~l~~------asPa~vsr~~~v~~~~ 1909 (1949)
++|++|..-+.|.+.. .+.+...+.+. ++.+.++.+ +|||.-.|..-+|+.+
T Consensus 812 Rln~~Le~~rtL~~~e~~~a~~~~v~A~~~f~-~~atmnpGgd~gkkEls~AlrNrfte~~~~~ 874 (1856)
T KOG1808|consen 812 RLNEVLEPDRTLLLLENQTAEEETVIAEEGFQ-LVATMNPGGDYGKKELSPALRNRFTEVILQS 874 (1856)
T ss_pred HHHHHhCcccccccccccccchhceeecccch-hhhccCCccccceeecChhhhhceeEEEEec
Confidence 9999999999888877 55666666654 455656554 9999999999999764
No 10
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.94 E-value=7.7e-26 Score=281.05 Aligned_cols=407 Identities=13% Similarity=0.021 Sum_probs=299.0
Q ss_pred ceEeeccceeccccccccCCCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC
Q psy2654 1389 CFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM 1468 (1949)
Q Consensus 1389 ~~v~~~~~~~~y~~ey~g~~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~ 1468 (1949)
+++...++...|-|+|.|.+.+++.||+----+.+++-|++...|-. +|||||++++.+++.+|| ++ +++
T Consensus 905 ~~~~~s~y~~~~~f~~~~ip~~~~~~~~~~~~~~~l~~a~~~~~c~f----~~t~~s~~~~~~~~~~gr-i~-----d~~ 974 (3164)
T COG5245 905 FIKVRSSYRSAEMFAKNTIPFFVFEHSMDTSQHQKLFEAVCDEVCRF----VDTENSRVYGMLVAGKGR-IY-----DGT 974 (3164)
T ss_pred eEeechhhHHHHHHHhcCCChhheechhhhhhHHHHHHHHHHHHhee----cCCCCceeHHHHhcCCCe-ee-----cCC
Confidence 56777888999999999999999999999999999999999988544 899999999999999999 32 888
Q ss_pred CHhhhhhhcccccccCccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccc
Q psy2654 1469 DYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRIS 1548 (1949)
Q Consensus 1469 ~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~ 1548 (1949)
+++ +|+..|..+.|+|+ +||+++|..-++ +++.....+++.++..+.+
T Consensus 975 ~~~--sri~~g~~~~~~~g-~~e~~~lde~~~-~i~~~~~~~~~~~~~~~~~---------------------------- 1022 (3164)
T COG5245 975 EPR--SRIEAGPICEEERG-TEESALLDEISR-TILVDEYLNSDEFRMLEEL---------------------------- 1022 (3164)
T ss_pred Chh--hhhhccceehhhcc-chhHHHHHHHHH-HHhhhHHhcchHHHHHHHH----------------------------
Confidence 888 99999999999999 999999999988 4444444454444332221
Q ss_pred hhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHH
Q psy2654 1549 VEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIML 1628 (1949)
Q Consensus 1549 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L 1628 (1949)
..++. ++-...|+..+|+|.|| |..+|+++|..||.+.+..| ...|.+-.
T Consensus 1023 --------------~s~~~----------e~~~~sp~t~v~~~in~----r~~~~e~~~~a~~~f~~~~p-~g~i~~~~- 1072 (3164)
T COG5245 1023 --------------NSAVV----------EHGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSRR- 1072 (3164)
T ss_pred --------------HHHHH----------HcCCCCCCCceEEEecc----hhhHHHHHHHHHHHHHhcCC-chhHHHHH-
Confidence 11111 12235789999999999 89999999999999999999 77777652
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHhhcccccCCCCCcHHHHHHHHHhhhcCCCCCcccHH
Q psy2654 1629 VSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKIITEDLQ 1708 (1949)
Q Consensus 1629 ~~~gf~~~~~la~k~~~~~~~~~~~~s~~~~~~~~lr~l~~vl~~a~~~~~~~~~~~e~~~l~~a~~~~~~~~l~~~d~~ 1708 (1949)
+.|+++|+.|..+.....+..+||-| |.++.+|+....+..... | .+-..+...-+|.+...
T Consensus 1073 --------~sl~~~i~~f~~~~~~~~~~~~~~~f--~~~~~~l~~~~~~l~e~~---e--~~~~i~~~~~lp~i~dt--- 1134 (3164)
T COG5245 1073 --------ESLDREIGAFNNEVDGIAREEDELMF--YPMFKSLKAKHRMLEEKT---E--YLNKILSITGLPLISDT--- 1134 (3164)
T ss_pred --------HHHHHHHHHHHHHhhhhhcccchhhh--HHHHHHHhhcchHHHHhh---H--HHHHHHHHhCCCchhHH---
Confidence 78999999999999998899999987 999999987755432211 1 11112222335655432
Q ss_pred HHHHhHhccCCCCCCCCCCchhHHHHHHHHHHhcCCCcChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1709 VFMGLIGDLFPALDVPRKRDIDFEKQVRQATIDMKLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1709 ~~~~l~~~~fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+.+.+. .|...-.| ...........++-+..|+.... |+. ++.+...+...+++|..|+|||.-|+......
T Consensus 1135 -l~e~~~-~~da~~~~-~~~~s~~~~~~~s~q~sg~~~a~-f~~----f~~~~~t~~~~~~~~~~~~~k~~~~~~~~d~~ 1206 (3164)
T COG5245 1135 -LRERID-TLDAEWDS-FCRISESLKKYESQQVSGLDVAQ-FVS----FLRSVDTGAFHAEYFRVFLCKIKHYTDACDYL 1206 (3164)
T ss_pred -HHHHHH-HHhhcCCc-hhHHHHHHHHHhhccccCccHHH-HHH----HHHHhhhcHHHHHHHHHhhcccchhhhhhccc
Confidence 223222 22111111 11111122222333334555444 443 88888888889999999999999998877533
Q ss_pred HhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCC-CCCcEEEEcCCCCccchhhHHhhhcCCcc
Q psy2654 1789 VNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTG-DGPKWMVMDGDIDPMWIESLNTVMDDNKV 1867 (1949)
Q Consensus 1789 ~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~-~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~ 1867 (1949)
++... |-..+ + ++ ..+.||+ |+|..+.|+-....- ++.-|.+||. ++|.+|+++|+||.
T Consensus 1207 ----~h~~~----~yv~~--~---~~-~a~~e~r-~~f~~~~r~d~~~~~~~s~~~~~~~~-----yve~~~a~~~~~kl 1266 (3164)
T COG5245 1207 ----WHVKS----PYVKK--K---YF-DADMELR-QFFLMFNREDMEARLADSKMEYEVER-----YVEKTKAEVSSLKL 1266 (3164)
T ss_pred ----cccCc----hhhHH--H---Hh-hhhHHHH-HHHHHHhHHhhhhhhccceEEEehHH-----HHHHHHhhhcccee
Confidence 22111 11111 2 23 3568999 999999997655443 4557999998 99999999999999
Q ss_pred eeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCCchhhHHhhhc
Q psy2654 1868 LTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1868 l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~ 1923 (1949)
+++|+||+ +++|| ||. .+|++|.||++.|.+....+.+..+.--+.
T Consensus 1267 ~~~~~ge~-------~v~~~--nl~-s~~~~v~rc~~~~ds~~~~St~~~~~~~lg 1312 (3164)
T COG5245 1267 ELSSVGEG-------QVVVS--NLG-SIGDKVGRCLVEYDSISRLSTKGVFLDELG 1312 (3164)
T ss_pred eeccCCCc-------eEEEe--eCC-CccchhheeeeeecccchhccchhhHHhhc
Confidence 99999998 89999 888 899999999999999888887777665553
No 11
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.79 E-value=1.3e-18 Score=203.24 Aligned_cols=235 Identities=20% Similarity=0.199 Sum_probs=175.7
Q ss_pred ccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCcccccc
Q psy2654 1411 LVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFD 1490 (1949)
Q Consensus 1411 ~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~d 1490 (1949)
||.||.+.+....+..++..+.++++.||+|||||++++++|+.+|.+++.+||++.++...+.+-..|..... .+|
T Consensus 1 ~~~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~---~~~ 77 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK---VHD 77 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh---HHH
Confidence 58899999999999999999999999999999999999999999999999999999988877654433211110 001
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHhhhcccc-ccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhc
Q psy2654 1491 EFNRISVEVLSVVAVQVKSVLDSVKMRKSRFN-FMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMR 1569 (1949)
Q Consensus 1491 e~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~ 1569 (1949)
++ +.. +......+. -+..|++..++.+|.|.++||+|++++++.+.+.+.++.-.-.+...
T Consensus 78 ~~--------------~~~----~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~ 139 (262)
T TIGR02640 78 QF--------------IHN----VVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGK 139 (262)
T ss_pred HH--------------HHH----hhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCC
Confidence 11 100 001111111 24477888888999999999999999999887777664322111110
Q ss_pred cccceeccceEEEecCeeEEEEeCC-CCCCCCCChhhHhhcccccccccCCHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q psy2654 1570 KSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYS 1648 (1949)
Q Consensus 1570 ~~~~~~~~~~i~~~~~~~~f~tmnp-~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~la~k~~~~~~ 1648 (1949)
. ..++.|++||+|++++|+|| .|.|.+++|++|+.+|..+.+..||.....+|.... +..+..++.+++.++.
T Consensus 140 ~----~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~--~~~~~~~~~~iv~~~~ 213 (262)
T TIGR02640 140 R----GTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK--TDVAEDSAATIVRLVR 213 (262)
T ss_pred C----CCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh--hCCCHHHHHHHHHHHH
Confidence 0 12456889999999999999 599999999999999999999999998877766543 4557789999999999
Q ss_pred HHHHHhcCCCCCCCchhhHHHHHHhhc
Q psy2654 1649 LCKELLSKQDHYDWGLRAIKSVLVVAG 1675 (1949)
Q Consensus 1649 ~~~~~~s~~~~~~~~lr~l~~vl~~a~ 1675 (1949)
.++ +...+...|.|..-.+.+.+.
T Consensus 214 ~~R---~~~~~~~~~~r~~i~~~~~~~ 237 (262)
T TIGR02640 214 EFR---ASGDEITSGLRASLMIAEVAT 237 (262)
T ss_pred HHH---hhCCccCCcHHHHHHHHHHHH
Confidence 888 344556778777666655543
No 12
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.78 E-value=2.9e-18 Score=198.26 Aligned_cols=259 Identities=14% Similarity=0.178 Sum_probs=196.1
Q ss_pred CCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccc
Q psy2654 1408 TPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWG 1487 (1949)
Q Consensus 1408 ~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~ 1487 (1949)
.+.++..|.+.+ .+..++..+.+.++.||+|||||++++++|+.+|.+++.+||+++++..++.+...-..+.|
T Consensus 44 d~~y~f~~~~~~---~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g--- 117 (327)
T TIGR01650 44 DPAYLFDKATTK---AICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDG--- 117 (327)
T ss_pred CCCccCCHHHHH---HHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCC---
Confidence 345777766544 36667777888999999999999999999999999999999999998876554321111111
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhh
Q psy2654 1488 CFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVK 1567 (1949)
Q Consensus 1488 ~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~ 1567 (1949)
. ....+.+|++..++++|.|.++||+|++++++++++...++.
T Consensus 118 ------------------------------~-~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~------ 160 (327)
T TIGR01650 118 ------------------------------K-QITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEA------ 160 (327)
T ss_pred ------------------------------c-ceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhcc------
Confidence 0 111235677888899999999999999999999877776642
Q ss_pred hcccccee--ccceEEEecCeeEEEEeCC-C-------CCCCCCChhhHhhcccc-cccccCCHHHHHHHHHhh-hchh-
Q psy2654 1568 MRKSRFNF--MGENIKLVTTVGMFITMNP-G-------YAGRAELPENLKALFRP-CAMVVPDFALICEIMLVS-EGFQ- 1634 (1949)
Q Consensus 1568 ~~~~~~~~--~~~~i~~~~~~~~f~tmnp-~-------~~g~~~LP~~lk~~fr~-v~~~~pD~~~i~e~~L~~-~gf~- 1634 (1949)
.+.+.+ .++.|..||+|++|+|+|| | |.|...||+++..||.- +.|.-|+...-.+|.... .|+.
T Consensus 161 --~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~ 238 (327)
T TIGR01650 161 --GGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDD 238 (327)
T ss_pred --CCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCc
Confidence 334444 3678889999999999999 4 89999999999999975 478888888777776643 3443
Q ss_pred -hHHHHHHHHHHHHHHHHHHh-cCCCCCCCchhhHHHHHHhhcccccCCCCCcHHHHHHHHHhhhcCCCCCcccHHHHHH
Q psy2654 1635 -EARLLSRKFITLYSLCKELL-SKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKIITEDLQVFMG 1712 (1949)
Q Consensus 1635 -~~~~la~k~~~~~~~~~~~~-s~~~~~~~~lr~l~~vl~~a~~~~~~~~~~~e~~~l~~a~~~~~~~~l~~~d~~~~~~ 1712 (1949)
.++.+.++++.+-...|+.+ ........+-|++.+....+.... .-+..|++..+..+....+++.+.+
T Consensus 239 ~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f~---------~~~~~a~~~~~~n~~~~~er~~~~e 309 (327)
T TIGR01650 239 TEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIFD---------HDIALAFRLTFLNKCDELERPTVAE 309 (327)
T ss_pred cchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhhC---------ccHHHHHHHHHHhcCCHHHHHHHHH
Confidence 25678999999999998765 333344567777776665543331 0268899999999999999999999
Q ss_pred hHhccCCC
Q psy2654 1713 LIGDLFPA 1720 (1949)
Q Consensus 1713 l~~~~fp~ 1720 (1949)
+....|+.
T Consensus 310 ~~q~~f~~ 317 (327)
T TIGR01650 310 FFQRAFGE 317 (327)
T ss_pred HHHHHcCC
Confidence 99999975
No 13
>PHA02244 ATPase-like protein
Probab=99.54 E-value=9.2e-14 Score=161.98 Aligned_cols=197 Identities=17% Similarity=0.235 Sum_probs=147.7
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFN 1493 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~ 1493 (1949)
.|.+...+..+..++..+.+++|.||+|||||++++++|+.+|+|++.+|+.. +...+.+.. ...|.
T Consensus 102 sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~--d~~~L~G~i---~~~g~-------- 168 (383)
T PHA02244 102 NPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM--DEFELKGFI---DANGK-------- 168 (383)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh--HHHhhcccc---ccccc--------
Confidence 46667778888999999999999999999999999999999999999998532 211111110 11111
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccc
Q psy2654 1494 RISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRF 1573 (1949)
Q Consensus 1494 ~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 1573 (1949)
+.++++..+.++|.|.++||+|+++++++..+...++. ..+
T Consensus 169 ------------------------------~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~---------r~l 209 (383)
T PHA02244 169 ------------------------------FHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIAN---------KFF 209 (383)
T ss_pred ------------------------------ccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhcc---------CeE
Confidence 22455666678899999999999999988776666533 245
Q ss_pred eeccceEEEecCeeEEEEeCC---C----CCCCCCChhhHhhcccccccccCCHHHHHHHHHhhhchhhHHHHHHHHHHH
Q psy2654 1574 NFMGENIKLVTTVGMFITMNP---G----YAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITL 1646 (1949)
Q Consensus 1574 ~~~~~~i~~~~~~~~f~tmnp---~----~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~la~k~~~~ 1646 (1949)
.+.|..+..||+|++++|.|| | |+|++.|++++++||..|.+.-|+ . +|..+.. -+.+++.+
T Consensus 210 ~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~-~--~E~~i~~--------~~~~lv~~ 278 (383)
T PHA02244 210 DFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDE-K--IEHLISN--------GDEDLVNF 278 (383)
T ss_pred EecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCc-H--HHHHHhh--------hHHHHHHH
Confidence 556888999999999999999 3 568999999999999999998887 2 3333322 15688888
Q ss_pred HHHHHHHh-cCCCCCCCchhhHHHHHHh
Q psy2654 1647 YSLCKELL-SKQDHYDWGLRAIKSVLVV 1673 (1949)
Q Consensus 1647 ~~~~~~~~-s~~~~~~~~lr~l~~vl~~ 1673 (1949)
-..++..+ .....+.++.|.+-..-+.
T Consensus 279 a~~lR~~~~~~~l~~~~StR~li~~a~~ 306 (383)
T PHA02244 279 VALLRHEMAEKGLDHVFSMRAIIHGKKF 306 (383)
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHh
Confidence 88888855 3456678888877665554
No 14
>KOG0733|consensus
Probab=99.54 E-value=3e-13 Score=160.28 Aligned_cols=387 Identities=17% Similarity=0.213 Sum_probs=209.4
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhcccccc-cCccccccccccccchhh
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGLAQ-TGAWGCFDEFNRISVEVL 1500 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~~~-~g~w~~~de~~~l~~~~l 1500 (1949)
+.-.+|++++||+|||||.+++++|..+|.|++.++..+ +-+.+.+..+|..+.+ +-|.+.+||++-+.+..-
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKRE 299 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchh
Confidence 345689999999999999999999999999999999877 4557788888887755 478899999998877644
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceE
Q psy2654 1501 SVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENI 1580 (1949)
Q Consensus 1501 s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i 1580 (1949)
.. .-+.-.++-.|+-+.++.+..... .|..
T Consensus 300 ~a---------------------------------------------qreMErRiVaQLlt~mD~l~~~~~----~g~~- 329 (802)
T KOG0733|consen 300 EA---------------------------------------------QREMERRIVAQLLTSMDELSNEKT----KGDP- 329 (802)
T ss_pred hH---------------------------------------------HHHHHHHHHHHHHHhhhccccccc----CCCC-
Confidence 31 112222333444444444433221 0111
Q ss_pred EEecCeeEEEEeC-CCCCCCCCChhhHhh---cccccccccCCHHH---HHHHHHh----------------hhchhhHH
Q psy2654 1581 KLVTTVGMFITMN-PGYAGRAELPENLKA---LFRPCAMVVPDFAL---ICEIMLV----------------SEGFQEAR 1637 (1949)
Q Consensus 1581 ~~~~~~~~f~tmn-p~~~g~~~LP~~lk~---~fr~v~~~~pD~~~---i~e~~L~----------------~~gf~~~~ 1637 (1949)
+-+.++-| |+. |-++||. .=|+|.+.+||-.. |.++++. ..||..|.
T Consensus 330 -----VlVIgATnRPDs-----lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGAD 399 (802)
T KOG0733|consen 330 -----VLVIGATNRPDS-----LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGAD 399 (802)
T ss_pred -----eEEEecCCCCcc-----cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchh
Confidence 22333434 321 2344442 23689999998764 5555542 12343332
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-----------CCCCchhhHHHHHHhhcccccCCCCCcHHHHHHHHHhhhcCCCCCcc-
Q psy2654 1638 LLSRKFITLYSLCKELLSKQD-----------HYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKIITE- 1705 (1949)
Q Consensus 1638 ~la~k~~~~~~~~~~~~s~~~-----------~~~~~lr~l~~vl~~a~~~~~~~~~~~e~~~l~~a~~~~~~~~l~~~- 1705 (1949)
--|---..-+..++..+..+. +..-+...-++.+...... ....+-+.++.+++...--|. ..+
T Consensus 400 L~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~---~~~~~ld~v~~~~i~~~~d~~-S~E~ 475 (802)
T KOG0733|consen 400 LMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNA---ERPLELDRVVQDAILNNPDPL-SKEL 475 (802)
T ss_pred HHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcc---cccccHHHHHHHHHHhCCCCc-ChHH
Confidence 211111111111111111000 0000011111111110000 000012223333443221110 011
Q ss_pred ------cHHHHHHhHhccCC--------CCCCCCCCchhHHHHHHHHHHhcCCCcChHHHHHHHHHHHHHhcC--cEEEE
Q psy2654 1706 ------DLQVFMGLIGDLFP--------ALDVPRKRDIDFEKQVRQATIDMKLQPEDSFILKVVQLVELFAVR--HSVFI 1769 (1949)
Q Consensus 1706 ------d~~~~~~l~~~~fp--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~l~~~l~~~--~~vll 1769 (1949)
...-|..-+..+=| .++...+++..-.+.++..+.. .-.+..|--.+|.++... .||+|
T Consensus 476 ~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~-----aI~~PiK~pd~~k~lGi~~PsGvLL 550 (802)
T KOG0733|consen 476 LEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNM-----AILAPIKRPDLFKALGIDAPSGVLL 550 (802)
T ss_pred hccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHH-----HHhhhccCHHHHHHhCCCCCCceEE
Confidence 11223333332222 2333344444444444443222 223445667789988876 58999
Q ss_pred EecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEEEEcCC
Q psy2654 1770 IGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWMVMDGD 1849 (1949)
Q Consensus 1770 ~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg~ 1849 (1949)
.||||||||-+.++.|+.. .+|.-++.-.||+..|+..+ .+++|+..+..+.+...|||-..
T Consensus 551 ~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELlNkYVGES--------ErAVR~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 551 CGPPGCGKTLLAKAVANEA----------GANFISVKGPELLNKYVGES--------ERAVRQVFQRARASAPCVIFFDE 612 (802)
T ss_pred eCCCCccHHHHHHHHhhhc----------cCceEeecCHHHHHHHhhhH--------HHHHHHHHHHhhcCCCeEEEecc
Confidence 9999999999999998754 47788889999999998776 89999998887776666666433
Q ss_pred CCccc-----------hhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cc-eEEEecC
Q psy2654 1850 IDPMW-----------IESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RA-GILYINP 1909 (1949)
Q Consensus 1850 ~d~~w-----------~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~-~~v~~~~ 1909 (1949)
+|+.. .--+|.+|- =-.| +.-...+.+|-.|.-..-+-||.+- |. -++|++.
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLt------ElDG--l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLT------ELDG--LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHH------Hhcc--cccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 43321 112344441 1111 1223456677777777788888752 33 2566664
No 15
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.45 E-value=4.3e-14 Score=149.56 Aligned_cols=133 Identities=28% Similarity=0.321 Sum_probs=92.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHHHHHHHH
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLD 1512 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~ 1512 (1949)
+++|+||+|||||++++.+|+.+|.+++.++|+..++..++.+.+.-....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~----------------------------- 51 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQ----------------------------- 51 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTT-----------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccc-----------------------------
Confidence 357899999999999999999999999999999999998887655322111
Q ss_pred HHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEec------Ce
Q psy2654 1513 SVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVT------TV 1586 (1949)
Q Consensus 1513 ~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~------~~ 1586 (1949)
..+..+.+..+.++|.|.++||+|++++++++.+.+.++... -.+.-.+..+..++ +|
T Consensus 52 ---------~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 115 (139)
T PF07728_consen 52 ---------FEFKDGPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERR-------IQLPEGGEEIKEPNNDLASPNF 115 (139)
T ss_dssp ---------TCEEE-CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSE-------EEE-TSSSEEE--TT------E
T ss_pred ---------cccccccccccccceeEEEECCcccCCHHHHHHHHHHHhhCc-------ccccCCCcEEecCcccccccce
Confidence 113345666677788888889999888888877666654321 11112234454444 69
Q ss_pred eEEEEeCCCCCCCCCChhhHhhcc
Q psy2654 1587 GMFITMNPGYAGRAELPENLKALF 1610 (1949)
Q Consensus 1587 ~~f~tmnp~~~g~~~LP~~lk~~f 1610 (1949)
++++||||...|++++++.|++||
T Consensus 116 ~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 116 RIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEESSST--TTTTCHHHHTT-
T ss_pred EEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999998799999999999998
No 16
>KOG0730|consensus
Probab=99.43 E-value=1.9e-12 Score=156.85 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=98.4
Q ss_pred cChHHHHHHHHHHHHHhcC--cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCccc
Q psy2654 1746 PEDSFILKVVQLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKD 1823 (1949)
Q Consensus 1746 ~~~~~~~k~~~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~d 1823 (1949)
.+-.|..+...-|..+... +||+++||||||||++.+++|+.. .+|.-++...|||-.|...+
T Consensus 448 ~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkgpEL~sk~vGeS----- 512 (693)
T KOG0730|consen 448 QAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKGPELFSKYVGES----- 512 (693)
T ss_pred HHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccCHHHHHHhcCch-----
Confidence 3446666777777777654 699999999999999999999865 47778899999999887665
Q ss_pred ChHHHHHHHHhhcCCCCCcEEEEcCCCCccchhh-----------HHhhhcCCcceeccCCceeecCCCceEEEEeCCCC
Q psy2654 1824 GLFSCLIREQAQSTGDGPKWMVMDGDIDPMWIES-----------LNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR 1892 (1949)
Q Consensus 1824 G~l~~~~r~~~~~~~~~~~Wiv~Dg~~d~~w~e~-----------ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~ 1892 (1949)
.+.+|+.....+....-|||=..+|+.-.++ ||.+| +--+| +.-..++-++-.|.=..
T Consensus 513 ---Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLL------tEmDG--~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 513 ---ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLL------TEMDG--LEALKNVLVIAATNRPD 581 (693)
T ss_pred ---HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHH------HHccc--ccccCcEEEEeccCChh
Confidence 5666665554444444566543444433333 23333 22222 22225676777787788
Q ss_pred CCChhhhc--cc-eEEEecCCCCCch
Q psy2654 1893 TATPATVS--RA-GILYINPQDLGWN 1915 (1949)
Q Consensus 1893 ~asPa~vs--r~-~~v~~~~~~~~w~ 1915 (1949)
.+.||.+. |. -|||+...++.-+
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHH
Confidence 89999998 55 7899998887544
No 17
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.37 E-value=4e-13 Score=142.19 Aligned_cols=125 Identities=23% Similarity=0.380 Sum_probs=98.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccC--CCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINP--STREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~--~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
+|||+||||+|||++++.+|+.+ +........+...+..+|+|.+++ ...+|.+|.+.++++++ .|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~--------~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKG--------GI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEE--------EE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----hcceEEEEeccccccccceeeeeecccccccccccccccccce--------eE
Confidence 69999999999999999999988 333333445566778899999996 34469999999999976 99
Q ss_pred EEEcCCC--CccchhhHHhhhcCCcceeccCCceeecCC------CceEEEEeCCCC----CCChhhhccc
Q psy2654 1844 MVMDGDI--DPMWIESLNTVMDDNKVLTLASNERIALTP------SMRLLFEISNLR----TATPATVSRA 1902 (1949)
Q Consensus 1844 iv~Dg~~--d~~w~e~ln~~lddn~~l~l~~ge~i~~~~------~~~~ifE~~~l~----~asPa~vsr~ 1902 (1949)
++||+.. ++.+++.|+++||+++......++.+..++ ++++|+....-. .++||+.+||
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred EEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 9999865 899999999999988877666666777766 489999998887 8999999997
No 18
>KOG0736|consensus
Probab=99.37 E-value=2.1e-12 Score=157.30 Aligned_cols=372 Identities=18% Similarity=0.244 Sum_probs=196.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhcccccc-cCccccccccccccchhhHHHHHH
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGLAQ-TGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~~~-~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
.+++|++|||||+.|++.|+.+|.+++.+.|.+ +.+...+..+|.-+.. ..+.+|+.++|.+..+
T Consensus 434 vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id-------- 505 (953)
T KOG0736|consen 434 VLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGID-------- 505 (953)
T ss_pred EEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeec--------
Confidence 458999999999999999999999999999966 4445556666655533 4677777777665421
Q ss_pred HHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCe
Q psy2654 1507 VKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTV 1586 (1949)
Q Consensus 1507 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~ 1586 (1949)
..+--+...++++..+++ ..-+.+. .|..
T Consensus 506 ------------------------------------~dgged~rl~~~i~~~ls---------~e~~~~~------~~~~ 534 (953)
T KOG0736|consen 506 ------------------------------------QDGGEDARLLKVIRHLLS---------NEDFKFS------CPPV 534 (953)
T ss_pred ------------------------------------CCCchhHHHHHHHHHHHh---------cccccCC------CCce
Confidence 111112233333333332 0011111 1222
Q ss_pred eEEEEeCCCCCCCCCChhhHhhccc-ccccccCCHHH---HHHHHHhhhchh---hHHHHHHHHHHHHHHHHHHhcCCCC
Q psy2654 1587 GMFITMNPGYAGRAELPENLKALFR-PCAMVVPDFAL---ICEIMLVSEGFQ---EARLLSRKFITLYSLCKELLSKQDH 1659 (1949)
Q Consensus 1587 ~~f~tmnp~~~g~~~LP~~lk~~fr-~v~~~~pD~~~---i~e~~L~~~gf~---~~~~la~k~~~~~~~~~~~~s~~~~ 1659 (1949)
-+.+|.+. -..+|.+++++|+ ++.+..|+-.. |...++...-+. .-+.++++...|--.--+.+....
T Consensus 535 ivv~t~~s----~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~- 609 (953)
T KOG0736|consen 535 IVVATTSS----IEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHS- 609 (953)
T ss_pred EEEEeccc----cccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCc-
Confidence 33444432 3469999999887 57777777664 555555433322 122233332222111111111000
Q ss_pred CCCchhhHHHHHHhhcccccCCCCCcHHHHHHHHHhhhcCCCCCcccHHHHHHhHhccC------CCCCCCCCCchhHHH
Q psy2654 1660 YDWGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKIITEDLQVFMGLIGDLF------PALDVPRKRDIDFEK 1733 (1949)
Q Consensus 1660 ~~~~lr~l~~vl~~a~~~~~~~~~~~e~~~l~~a~~~~~~~~l~~~d~~~~~~l~~~~f------p~~~~~~~~~~~~~~ 1733 (1949)
-++.+..+..++ +.+......+..+. +..+.+..+|...-.+-++.-| |.++...+++..-.+
T Consensus 610 ----s~~~~~~i~~~~-l~g~~~~~~~~~~~------~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLe 678 (953)
T KOG0736|consen 610 ----SLAAKTRIKNKG-LAGGLQEEDEGELC------AAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLE 678 (953)
T ss_pred ----hHHHHHHHHhhc-ccccchhccccccc------cccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHH
Confidence 111222222222 11111111111111 1123444555443333222222 556666666654444
Q ss_pred HHHHHHHh-cCCCcChHHHHHHHHHHH-HHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCccccc
Q psy2654 1734 QVRQATID-MKLQPEDSFILKVVQLVE-LFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELF 1811 (1949)
Q Consensus 1734 ~~~~~~~~-~~l~~~~~~~~k~~~l~~-~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~ 1811 (1949)
.++..+.+ .++ ..|..+|+- -+..|.||+|+||||+|||-+.|+.|.-+ .+|.-++.-.||+
T Consensus 679 evK~eIldTIql------PL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGPELL 742 (953)
T KOG0736|consen 679 EVKTEILDTIQL------PLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELL 742 (953)
T ss_pred HHHHHHHHHhcC------cccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCHHHH
Confidence 44433222 222 122233444 55668999999999999999999999765 3667778888999
Q ss_pred ccccCCCCCcccChHHHHHHHHhhcCCCCCcEEEEcCCCCc------------cchhhHHhhhcCCcceeccCCceee--
Q psy2654 1812 GIINPSTREWKDGLFSCLIREQAQSTGDGPKWMVMDGDIDP------------MWIESLNTVMDDNKVLTLASNERIA-- 1877 (1949)
Q Consensus 1812 G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg~~d~------------~w~e~ln~~lddn~~l~l~~ge~i~-- 1877 (1949)
.-|...+ ..=+|+.....+....++||-..+|+ .++++.-|=| |++=+-+.
T Consensus 743 NMYVGqS--------E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQL-------LAELDgls~~ 807 (953)
T KOG0736|consen 743 NMYVGQS--------EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQL-------LAELDGLSDS 807 (953)
T ss_pred HHHhcch--------HHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHH-------HHHhhcccCC
Confidence 8887655 45566666555555555555333322 2666665433 11111111
Q ss_pred cCCCceEEEEeCCCCCCChhhh--ccc-eEEEecCCC
Q psy2654 1878 LTPSMRLLFEISNLRTATPATV--SRA-GILYINPQD 1911 (1949)
Q Consensus 1878 ~~~~~~~ifE~~~l~~asPa~v--sr~-~~v~~~~~~ 1911 (1949)
-...+++|=.|.-.+-+=||.+ .|+ -+||++++.
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCc
Confidence 1234566667766666777765 344 378887654
No 19
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.35 E-value=2.7e-11 Score=162.13 Aligned_cols=363 Identities=17% Similarity=0.196 Sum_probs=182.7
Q ss_pred HHHHHHH--hccCCCCCCCCCCChhHHHHHHHHHh----------cceEEEEeCCCCCC--------Hhhhhhhcccccc
Q psy2654 1423 TLSQSLH--LNMGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQMD--------YRSCGNIYKGLAQ 1482 (1949)
Q Consensus 1423 ~l~~al~--~~~~~~l~G~~g~GKt~~v~~la~~l----------g~~~~~~n~~~~~~--------~~~l~~~~~g~~~ 1482 (1949)
.+...|. ....++++||+|||||++++.||+.+ |..++.++|+.-.. .+.+.+++.-+..
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~ 272 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK 272 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc
Confidence 3444444 34457899999999999999999998 88899988765432 1355666665543
Q ss_pred -cCccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHh
Q psy2654 1483 -TGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKS 1561 (1949)
Q Consensus 1483 -~g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~ 1561 (1949)
.+..+.+||++.+...--+ ..|. .| .+..+..
T Consensus 273 ~~~~ILfiDEih~l~~~g~~--------------------------------~~~~---~~------------~~~~L~~ 305 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGAT--------------------------------SGGS---MD------------ASNLLKP 305 (731)
T ss_pred cCCeEEEEecHHHHhccCCC--------------------------------CCcc---HH------------HHHHHHH
Confidence 3567788888876431000 0000 00 0000100
Q ss_pred HhhhhhhccccceeccceEEEecCeeEEEEeCC-CCCCCCCChhhHhhcccccccccCCHHHHHHHHHhhhchhhHHHHH
Q psy2654 1562 VLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLS 1640 (1949)
Q Consensus 1562 ~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp-~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~la 1640 (1949)
.+. .-...+.++.|+ .|.-.-+..++|..+|.+|.+..|+.....+++-....
T Consensus 306 ---~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~-------- 359 (731)
T TIGR02639 306 ---ALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE-------- 359 (731)
T ss_pred ---HHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH--------
Confidence 010 123467777777 56544567889999999999999999987776642110
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHhhcccccCCCCCcHHHH-HHH-HHhhhc-------CCCCCcccHHHHH
Q psy2654 1641 RKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQV-LMR-ALRDFN-------IPKIITEDLQVFM 1711 (1949)
Q Consensus 1641 ~k~~~~~~~~~~~~s~~~~~~~~lr~l~~vl~~a~~~~~~~~~~~e~~~-l~~-a~~~~~-------~~~l~~~d~~~~~ 1711 (1949)
-|. .-....+.=.++..+...+....... ..+...+ ++. |....- ...+..+| +.
T Consensus 360 -----~~e-------~~~~v~i~~~al~~~~~ls~ryi~~r-~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~---i~ 423 (731)
T TIGR02639 360 -----KYE-------EFHHVKYSDEALEAAVELSARYINDR-FLPDKAIDVIDEAGASFRLRPKAKKKANVSVKD---IE 423 (731)
T ss_pred -----HHH-------hccCcccCHHHHHHHHHhhhcccccc-cCCHHHHHHHHHhhhhhhcCcccccccccCHHH---HH
Confidence 000 00001122222333333222221110 0111111 111 110000 00112222 22
Q ss_pred HhHhccCCCCCCCCCC--chhHHHHHHHHHHhcCCCcChHHHHHHHHHHHHHhc--------CcEEEEEecCCCChhHHH
Q psy2654 1712 GLIGDLFPALDVPRKR--DIDFEKQVRQATIDMKLQPEDSFILKVVQLVELFAV--------RHSVFIIGFAGTGKSCVW 1781 (1949)
Q Consensus 1712 ~l~~~~fp~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~k~~~l~~~l~~--------~~~vll~G~~gsGKTt~~ 1781 (1949)
..+.... +++..... ...-...+...+.+ .+...+..+..+.+....... ...++++||||+|||++.
T Consensus 424 ~~i~~~t-giP~~~~~~~~~~~l~~l~~~l~~-~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 424 NVVAKMA-HIPVKTVSVDDREKLKNLEKNLKA-KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred HHHHHHh-CCChhhhhhHHHHHHHHHHHHHhc-ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 2222211 11111111 11111122222222 223334444444444333221 124799999999999999
Q ss_pred HHHHHHHHhccCCCcccccC----CCccCcccccccccCCCCCc-ccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccc
Q psy2654 1782 KTLYKTYVNAKKKPMYNDLE----PKAVTNDELFGIINPSTREW-KDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMW 1854 (1949)
Q Consensus 1782 ~~La~~~~~~~~~~~~~~i~----p~~~~~~el~G~~~~~~~~w-~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w 1854 (1949)
++||+.+. . .+.+++ ....+...++|.... --++ ..|.++.++|.. ...-|+||. .+++..
T Consensus 502 ~~la~~l~----~-~~~~~d~se~~~~~~~~~lig~~~g-yvg~~~~~~l~~~~~~~------p~~VvllDEieka~~~~ 569 (731)
T TIGR02639 502 KQLAEALG----V-HLERFDMSEYMEKHTVSRLIGAPPG-YVGFEQGGLLTEAVRKH------PHCVLLLDEIEKAHPDI 569 (731)
T ss_pred HHHHHHhc----C-CeEEEeCchhhhcccHHHHhcCCCC-CcccchhhHHHHHHHhC------CCeEEEEechhhcCHHH
Confidence 99999872 1 122222 222334456665311 1122 246788887753 236799994 568888
Q ss_pred hhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC
Q psy2654 1855 IESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL 1891 (1949)
Q Consensus 1855 ~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l 1891 (1949)
...|-.+||+.+ ++-..|..+.+.+. +++-|+|+
T Consensus 570 ~~~Ll~~ld~g~-~~d~~g~~vd~~~~--iii~Tsn~ 603 (731)
T TIGR02639 570 YNILLQVMDYAT-LTDNNGRKADFRNV--ILIMTSNA 603 (731)
T ss_pred HHHHHHhhccCe-eecCCCcccCCCCC--EEEECCCc
Confidence 999999998755 46566766655533 44445544
No 20
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.35 E-value=1.1e-12 Score=128.88 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHHHHHHHHH
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDS 1513 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~~ 1513 (1949)
++|.|++|+|||++++.||+.+|..+.+++|++.+...++.+.-.--.+.+.|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f--------------------------- 54 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEF--------------------------- 54 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEE---------------------------
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCee---------------------------
Confidence 46889999999999999999999999999999988888876552211111222
Q ss_pred HHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeC
Q psy2654 1514 VKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMN 1593 (1949)
Q Consensus 1514 ~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmn 1593 (1949)
.|. .|++. ..+.+.||+||+++.+.+++-+.++ ..++.++|.+..+...|.+++|+|
T Consensus 55 --------~~~-~GPif-----~~ill~DEiNrappktQsAlLeam~---------Er~Vt~~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 55 --------EFR-PGPIF-----TNILLADEINRAPPKTQSALLEAME---------ERQVTIDGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp --------EEE-E-TT------SSEEEEETGGGS-HHHHHHHHHHHH---------HSEEEETTEEEE--SS-EEEEEE-
T ss_pred --------Eee-cChhh-----hceeeecccccCCHHHHHHHHHHHH---------cCeEEeCCEEEECCCcEEEEEecC
Confidence 110 01111 2345567777777777665555443 367778899999999999999999
Q ss_pred C-CCCCCCCChhhHhhcc
Q psy2654 1594 P-GYAGRAELPENLKALF 1610 (1949)
Q Consensus 1594 p-~~~g~~~LP~~lk~~f 1610 (1949)
| ++.|.-+||+++..||
T Consensus 112 p~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 112 PVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp TT--S------HHHHTTS
T ss_pred ccccCceecCCHHHhccc
Confidence 9 7899999999999998
No 21
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.34 E-value=5.5e-11 Score=155.82 Aligned_cols=101 Identities=21% Similarity=0.190 Sum_probs=66.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC----CccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP----KAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p----~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
.++++||||||||++.+.||+.+. ..+.+++- ...+...|+|.-..-.+....|.++..+++. ..
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~------p~ 558 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH------PH 558 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhC------CC
Confidence 589999999999999999999872 22333332 2223567888521111123457888888763 12
Q ss_pred cEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeec
Q psy2654 1842 KWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIAL 1878 (1949)
Q Consensus 1842 ~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~ 1878 (1949)
.-|+||. -+++.+...|-.+||++. ++-..|..+.+
T Consensus 559 sVlllDEieka~~~v~~~LLq~ld~G~-ltd~~g~~vd~ 596 (758)
T PRK11034 559 AVLLLDEIEKAHPDVFNLLLQVMDNGT-LTDNNGRKADF 596 (758)
T ss_pred cEEEeccHhhhhHHHHHHHHHHHhcCe-eecCCCceecC
Confidence 5688895 457888888999998754 45555665544
No 22
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.29 E-value=3.8e-12 Score=148.97 Aligned_cols=183 Identities=20% Similarity=0.178 Sum_probs=140.5
Q ss_pred ceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc-c---------------
Q psy2654 1024 LVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC-G--------------- 1087 (1949)
Q Consensus 1024 lv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~-~--------------- 1087 (1949)
+|.||...+....+..++....+..+.||+|||||++++.+|+.+|.+++.++|++.++...+ +
T Consensus 1 ~~~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 367888999999999999998889999999999999999999999999999999987764322 1
Q ss_pred ----------------ccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceee
Q psy2654 1088 ----------------NIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFI 1151 (1949)
Q Consensus 1088 ----------------~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~ 1151 (1949)
+-+.-++..|.|+++||+|+++.++.+.+...+. ...-..|.....+..+..++++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le----~~~~~i~~~~~~~~~i~~~~~frvIa 156 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFE----EGVLELPGKRGTSRYVDVHPEFRVIF 156 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhc----CCeEEccCCCCCCceEecCCCCEEEE
Confidence 1112245678899999999999998776654432 21101111111133466889999999
Q ss_pred ecCC-CCCCCCCCchhHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhh
Q psy2654 1152 TMNP-GYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCK 1212 (1949)
Q Consensus 1152 t~n~-~~~~~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~ 1212 (1949)
|+|| .|.|..++|+.|+..|..+.+..||.+.-.+|.... +.....++.+++.++..+.
T Consensus 157 TsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~--~~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 157 TSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK--TDVAEDSAATIVRLVREFR 216 (262)
T ss_pred eeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHH
Confidence 9999 588999999999999999999999987777765543 4456678899999988766
No 23
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=147.75 Aligned_cols=193 Identities=21% Similarity=0.196 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCcccccccccccc
Q psy2654 1417 TDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1417 t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~ 1496 (1949)
.+.....+..|+..+.++++.||+|||||++++++|+.+|.+++.++|++++...++-+...-..+...
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~----------- 97 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLE----------- 97 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhcc-----------
Confidence 567778888899999999999999999999999999999999999999999998776544321111000
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceec
Q psy2654 1497 VEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM 1576 (1949)
Q Consensus 1497 ~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 1576 (1949)
.....+..|++....+ .-.++||||++++++.+++-+.++. ..+...
T Consensus 98 ----------------------~~~~~~~~gpl~~~~~--~ill~DEInra~p~~q~aLl~~l~e---------~~vtv~ 144 (329)
T COG0714 98 ----------------------PGEFRFVPGPLFAAVR--VILLLDEINRAPPEVQNALLEALEE---------RQVTVP 144 (329)
T ss_pred ----------------------CCeEEEecCCcccccc--eEEEEeccccCCHHHHHHHHHHHhC---------cEEEEC
Confidence 1111233444444433 4566699999988888766655432 455666
Q ss_pred cce-EEEecCeeEEEEeCC-CCCCCCCChhhHhhcc-cccccccCCHHHHHHHHHh-hhchhh--HHHHHHHHHHHHHHH
Q psy2654 1577 GEN-IKLVTTVGMFITMNP-GYAGRAELPENLKALF-RPCAMVVPDFALICEIMLV-SEGFQE--ARLLSRKFITLYSLC 1650 (1949)
Q Consensus 1577 ~~~-i~~~~~~~~f~tmnp-~~~g~~~LP~~lk~~f-r~v~~~~pD~~~i~e~~L~-~~gf~~--~~~la~k~~~~~~~~ 1650 (1949)
|.. +.+++.|.+++|+|| .|.|..+||++++.+| -.+.+.-|+......+++. ..+... .....+.++......
T Consensus 145 ~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~ 224 (329)
T COG0714 145 GLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELL 224 (329)
T ss_pred CcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHH
Confidence 777 999999999999999 5899999999999999 8888888855554444444 334232 355556666655555
Q ss_pred HHH
Q psy2654 1651 KEL 1653 (1949)
Q Consensus 1651 ~~~ 1653 (1949)
+.+
T Consensus 225 ~~~ 227 (329)
T COG0714 225 RLQ 227 (329)
T ss_pred HHH
Confidence 443
No 24
>PHA02244 ATPase-like protein
Probab=99.25 E-value=3.5e-11 Score=140.73 Aligned_cols=147 Identities=16% Similarity=0.267 Sum_probs=115.1
Q ss_pred ChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChH
Q psy2654 1747 EDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLF 1826 (1949)
Q Consensus 1747 ~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l 1826 (1949)
.+.+......+...+..+.+|+|.||||||||++++.+|..+ ...+..++ ...+..++.|.++. .+.|.||.|
T Consensus 102 sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l-----g~pfv~In-~l~d~~~L~G~i~~-~g~~~dgpL 174 (383)
T PHA02244 102 NPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL-----DLDFYFMN-AIMDEFELKGFIDA-NGKFHETPF 174 (383)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEe-cChHHHhhcccccc-cccccchHH
Confidence 344555566777788899999999999999999999999876 22344454 22334467786654 458999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC-----------CC
Q psy2654 1827 SCLIREQAQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL-----------RT 1893 (1949)
Q Consensus 1827 ~~~~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l-----------~~ 1893 (1949)
.++++++ .|+++|.. .++.....||+++|+. .+.++ |+++..++++|+|+..... ..
T Consensus 175 l~A~~~G--------gvLiLDEId~a~p~vq~~L~~lLd~r-~l~l~-g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~ 244 (383)
T PHA02244 175 YEAFKKG--------GLFFIDEIDASIPEALIIINSAIANK-FFDFA-DERVTAHEDFRVISAGNTLGKGADHIYVARNK 244 (383)
T ss_pred HHHhhcC--------CEEEEeCcCcCCHHHHHHHHHHhccC-eEEec-CcEEecCCCEEEEEeeCCCccCcccccCCCcc
Confidence 9999888 89999954 4788899999999875 55555 7889999999999877652 56
Q ss_pred CChhhhccceEEEecCC
Q psy2654 1894 ATPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1894 asPa~vsr~~~v~~~~~ 1910 (1949)
.+||+++|+..|+++-.
T Consensus 245 L~~AllDRFv~I~~dyp 261 (383)
T PHA02244 245 IDGATLDRFAPIEFDYD 261 (383)
T ss_pred cCHHHHhhcEEeeCCCC
Confidence 79999999999999853
No 25
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=9.6e-10 Score=147.62 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=87.4
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhccCCCcccccC----CCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE----PKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~----p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
++++||||+|||.+.++||..+-... ..+.+++ ....+...|+|.--.--+.=..|.|+..+|+. ...
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~--~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~------p~s 670 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGE--QNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRK------PYS 670 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCC--cceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhC------CCc
Confidence 79999999999999999999873221 2222333 22334456766420000112468898888863 226
Q ss_pred EEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC-----------------------------
Q psy2654 1843 WMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL----------------------------- 1891 (1949)
Q Consensus 1843 Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l----------------------------- 1891 (1949)
-|+|| ...++...+.|-.++|+++ |+-+.|..+.+.+ .-+|+. +|+
T Consensus 671 vvllDEieka~~~v~~~Llq~ld~g~-l~d~~Gr~vd~~n-~iiI~T-SNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (852)
T TIGR03345 671 VVLLDEVEKAHPDVLELFYQVFDKGV-MEDGEGREIDFKN-TVILLT-SNAGSDLIMALCADPETAPDPEALLEALRPEL 747 (852)
T ss_pred EEEEechhhcCHHHHHHHHHHhhcce-eecCCCcEEeccc-cEEEEe-CCCchHHHHHhccCcccCcchHHHHHHHHHHH
Confidence 79999 4578888899999998865 5777788877765 334443 332
Q ss_pred -CCCChhhhccceEEEecC
Q psy2654 1892 -RTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1892 -~~asPa~vsr~~~v~~~~ 1909 (1949)
....|+.++||-+|.|.+
T Consensus 748 ~~~f~PEflnRi~iI~F~p 766 (852)
T TIGR03345 748 LKVFKPAFLGRMTVIPYLP 766 (852)
T ss_pred HHhccHHHhcceeEEEeCC
Confidence 125799999999888774
No 26
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.17 E-value=1e-10 Score=136.11 Aligned_cols=151 Identities=21% Similarity=0.259 Sum_probs=109.7
Q ss_pred CCCcChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccC----CC
Q psy2654 1743 KLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINP----ST 1818 (1949)
Q Consensus 1743 ~l~~~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~----~~ 1818 (1949)
+|...++... .+...+..+++|+|.|||||||||+++.+|+.++ .+.+.+.....++..+++|.... ..
T Consensus 46 ~y~f~~~~~~---~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~----~~~~rV~~~~~l~~~DliG~~~~~l~~g~ 118 (327)
T TIGR01650 46 AYLFDKATTK---AICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN----WPCVRVNLDSHVSRIDLVGKDAIVLKDGK 118 (327)
T ss_pred CccCCHHHHH---HHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC----CCeEEEEecCCCChhhcCCCceeeccCCc
Confidence 3444444333 2445566688999999999999999999999882 33333333455677889998421 11
Q ss_pred --CCcccChHHHHHHHHhhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccC-CceeecCCCceEEEEeCCCC-
Q psy2654 1819 --REWKDGLFSCLIREQAQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLAS-NERIALTPSMRLLFEISNLR- 1892 (1949)
Q Consensus 1819 --~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~-ge~i~~~~~~~~ifE~~~l~- 1892 (1949)
.+|+||+|..+++++ .|++||.- .++.....||++||+.+.+++++ |+.|..+|++|+|.......
T Consensus 119 ~~~~f~~GpL~~A~~~g--------~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~ 190 (327)
T TIGR01650 119 QITEFRDGILPWALQHN--------VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGL 190 (327)
T ss_pred ceeEEecCcchhHHhCC--------eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCc
Confidence 369999999999987 89999964 48889999999999999999986 55555666766555444333
Q ss_pred -----------CCChhhhccceEE-Eec
Q psy2654 1893 -----------TATPATVSRAGIL-YIN 1908 (1949)
Q Consensus 1893 -----------~asPa~vsr~~~v-~~~ 1908 (1949)
...+|++.|+.++ .++
T Consensus 191 Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 191 GDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred CCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 1479999999876 455
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.17 E-value=7.6e-10 Score=149.09 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=51.3
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCccccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l~~ 1497 (1949)
....|.+++||+|||||++++.+|+.+|.+++.++|++-.+ .+.+..+|..+.. ..+.+++||++.+..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAP 285 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc
Confidence 34567889999999999999999999999999999875322 2345555554433 346788888877654
No 28
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.13 E-value=2.6e-10 Score=132.93 Aligned_cols=211 Identities=21% Similarity=0.225 Sum_probs=128.8
Q ss_pred CCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcce---EEEEeCCCCCCHhhhhhhccccccc-
Q psy2654 1408 TPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIM---VYVFNCSEQMDYRSCGNIYKGLAQT- 1483 (1949)
Q Consensus 1408 ~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~---~~~~n~~~~~~~~~l~~~~~g~~~~- 1483 (1949)
..-+|.|.-|.|...-+-.-+..+.+++++||+|||||.+++++=+.+... +..++|+..++...+++++.+....
T Consensus 10 ~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~ 89 (272)
T PF12775_consen 10 NEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKR 89 (272)
T ss_dssp ---T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECEC
T ss_pred ceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcC
Confidence 356899999999999999999999999999999999999998866555532 4568999988888887776543221
Q ss_pred -C----------ccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhH
Q psy2654 1484 -G----------AWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVL 1552 (1949)
Q Consensus 1484 -g----------~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l 1552 (1949)
| ..+.+|++|.-.++.-... +.+
T Consensus 90 ~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq----------------------------------------------~~i 123 (272)
T PF12775_consen 90 RGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQ----------------------------------------------PPI 123 (272)
T ss_dssp TTEEEEEESSSEEEEEEETTT-S---TTS------------------------------------------------HHH
T ss_pred CCCCCCCCCCcEEEEEecccCCCCCCCCCCc----------------------------------------------CHH
Confidence 1 1123344444333321110 011
Q ss_pred HHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHH---HHHHHH-
Q psy2654 1553 SVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFAL---ICEIML- 1628 (1949)
Q Consensus 1553 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~---i~e~~L- 1628 (1949)
+.+.+.+ ..++-+.-.....+--.+..+.++|||+. ||..+|+.|...|+.+++..|+... |-..+|
T Consensus 124 ElLRQ~i--------~~~g~yd~~~~~~~~i~~i~~vaa~~p~~-Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 124 ELLRQLI--------DYGGFYDRKKLEWKSIEDIQFVAAMNPTG-GRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp HHHHHHH--------HCSEEECTTTTEEEEECSEEEEEEESSTT-T--SHHHHHHTTEEEEE----TCCHHHHHHHHHHH
T ss_pred HHHHHHH--------HhcCcccCCCcEEEEEeeeEEEEecCCCC-CCCCCChHHhhheEEEEecCCChHHHHHHHHHHHh
Confidence 1111111 11111111122344445678899999954 8889999999999999999997654 333333
Q ss_pred ---hhhchhh-----HHHHHHHHHHHHHHHHHHhc---CCCCCCCchhhHHHHHHh
Q psy2654 1629 ---VSEGFQE-----ARLLSRKFITLYSLCKELLS---KQDHYDWGLRAIKSVLVV 1673 (1949)
Q Consensus 1629 ---~~~gf~~-----~~~la~k~~~~~~~~~~~~s---~~~~~~~~lr~l~~vl~~ 1673 (1949)
...+|.. +..+....+.+|..+++.+. ...||.|++|.+.+|+.-
T Consensus 195 ~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qG 250 (272)
T PF12775_consen 195 SHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQG 250 (272)
T ss_dssp HHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHH
T ss_pred hhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHH
Confidence 3345533 56677888999999988773 467999999999988753
No 29
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.11 E-value=3.8e-09 Score=143.30 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=74.3
Q ss_pred CCCcChHHHHHHHHHHHHHhc-----C---cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC----CccCcccc
Q psy2654 1743 KLQPEDSFILKVVQLVELFAV-----R---HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP----KAVTNDEL 1810 (1949)
Q Consensus 1743 ~l~~~~~~~~k~~~l~~~l~~-----~---~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p----~~~~~~el 1810 (1949)
.+...+..+..+......... + ..++++||||+|||++.+.||+.+-... ..+.+++- ...+...|
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~~~~~~d~s~~~~~~~~~~l 587 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE--DAMIRLDMSEYMEKHTVSKL 587 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--cceEEEEchhccccccHHHh
Confidence 344555555555544433222 1 2368999999999999999999873221 12222221 22233445
Q ss_pred cccccCCCCCccc-ChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecC
Q psy2654 1811 FGIINPSTREWKD-GLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALT 1879 (1949)
Q Consensus 1811 ~G~~~~~~~~w~d-G~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~ 1879 (1949)
+|.- |..-+..+ |.++..+|+.. ..-|+||. -+++.....|-.+||+.+ ++-+.|..+...
T Consensus 588 ~g~~-~gyvg~~~~~~l~~~~~~~p------~~VvllDeieka~~~v~~~Llq~le~g~-~~d~~g~~v~~~ 651 (821)
T CHL00095 588 IGSP-PGYVGYNEGGQLTEAVRKKP------YTVVLFDEIEKAHPDIFNLLLQILDDGR-LTDSKGRTIDFK 651 (821)
T ss_pred cCCC-CcccCcCccchHHHHHHhCC------CeEEEECChhhCCHHHHHHHHHHhccCc-eecCCCcEEecC
Confidence 6642 11112323 57777777641 26688885 467888888888887765 455666666664
No 30
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.04 E-value=8.8e-09 Score=139.14 Aligned_cols=154 Identities=17% Similarity=0.282 Sum_probs=91.2
Q ss_pred CCcChHHHHHHHHHHHHHh----c-C---cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC----CccCccccc
Q psy2654 1744 LQPEDSFILKVVQLVELFA----V-R---HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP----KAVTNDELF 1811 (1949)
Q Consensus 1744 l~~~~~~~~k~~~l~~~l~----~-~---~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p----~~~~~~el~ 1811 (1949)
+...+..+..+..-..... . + .+++++||||+|||++.++|+..+...+.. +..++. ...+...|+
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~--~i~id~se~~~~~~~~~Li 647 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDA--MVRIDMSEFMEKHSVSRLV 647 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCc--EEEEEhHHhhhhhhHHHHh
Confidence 4445555555544444332 1 2 358999999999999999999877433222 222222 223345678
Q ss_pred ccccCCCCCcc-cChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe
Q psy2654 1812 GIINPSTREWK-DGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI 1888 (1949)
Q Consensus 1812 G~~~~~~~~w~-dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~ 1888 (1949)
|.- |...+.. .|.++..+|.. ...-++||. .+++.....|-.+||+++. +-..|..+...+. +|+=|
T Consensus 648 G~~-pgy~g~~~~g~l~~~v~~~------p~~vLllDEieka~~~v~~~Ll~ile~g~l-~d~~gr~vd~rn~--iiI~T 717 (857)
T PRK10865 648 GAP-PGYVGYEEGGYLTEAVRRR------PYSVILLDEVEKAHPDVFNILLQVLDDGRL-TDGQGRTVDFRNT--VVIMT 717 (857)
T ss_pred CCC-CcccccchhHHHHHHHHhC------CCCeEEEeehhhCCHHHHHHHHHHHhhCce-ecCCceEEeeccc--EEEEe
Confidence 743 2222233 35677666542 125688884 4678888888888887654 4455666655433 33335
Q ss_pred CCCC--------------------------CCChhhhccc-eEEEecC
Q psy2654 1889 SNLR--------------------------TATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1889 ~~l~--------------------------~asPa~vsr~-~~v~~~~ 1909 (1949)
+|+. ...|+.++|+ .++.+.|
T Consensus 718 SN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~P 765 (857)
T PRK10865 718 SNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHP 765 (857)
T ss_pred CCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCC
Confidence 5542 3568899999 5666554
No 31
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.03 E-value=5.2e-09 Score=140.37 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=80.0
Q ss_pred cCCCCCCCCCCCcchhHHHHHHhh----------cceEEEeeCCccchh--------hhccccchhhcc-cCcccccccc
Q psy2654 1045 MGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQMDY--------RSCGNIYKGLAQ-TGAWGCFDEF 1105 (1949)
Q Consensus 1045 ~~~~~~gp~gtGKt~~~~~la~~l----------g~~~~~~~~~~~~~~--------~~~~~~~~g~~~-~g~w~~fde~ 1105 (1949)
....+.||+|+|||.+++.+|+.+ |..++.++++..... ..+.+++.-+.. .+.-+.+||+
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEi 283 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEI 283 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecH
Confidence 346789999999999999999998 778888888765532 234444544332 3566788999
Q ss_pred ccchhh------HHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCC-CCCCCCCCchhHhhhcccccccc
Q psy2654 1106 NRISVE------VLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRPCAMVV 1178 (1949)
Q Consensus 1106 ~~l~~~------~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~-~~~~~~~lp~~l~~~fr~i~~~~ 1178 (1949)
+++... .. .++..|...++. ..+ .+..+.|+ +|...-++.+.|.+.|..|.+..
T Consensus 284 h~l~~~g~~~~~~~-~~~~~L~~~l~~-----g~i-------------~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~ 344 (731)
T TIGR02639 284 HTIVGAGATSGGSM-DASNLLKPALSS-----GKL-------------RCIGSTTYEEYKNHFEKDRALSRRFQKIDVGE 344 (731)
T ss_pred HHHhccCCCCCccH-HHHHHHHHHHhC-----CCe-------------EEEEecCHHHHHHHhhhhHHHHHhCceEEeCC
Confidence 877421 01 122223322211 111 22333333 44444567889999999999999
Q ss_pred CchhHHHHHhh
Q psy2654 1179 PDFALICEIML 1189 (1949)
Q Consensus 1179 pd~~~i~~~~l 1189 (1949)
|+.....+++-
T Consensus 345 p~~~~~~~il~ 355 (731)
T TIGR02639 345 PSIEETVKILK 355 (731)
T ss_pred CCHHHHHHHHH
Confidence 99888777644
No 32
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.03 E-value=3.1e-09 Score=139.54 Aligned_cols=43 Identities=42% Similarity=0.587 Sum_probs=36.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhh
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNI 1476 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~ 1476 (1949)
.+++||+|||||++++.||+.+|.+++.++|++-++...+.++
T Consensus 491 ~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 491 FLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHH
Confidence 3578999999999999999999999999999987665444444
No 33
>KOG0735|consensus
Probab=98.95 E-value=5.4e-09 Score=126.85 Aligned_cols=176 Identities=18% Similarity=0.227 Sum_probs=98.9
Q ss_pred HHHHHHH--hhhcCCCCCcccHHHHHHhHhccCCC----CCCC-----CCCchhHHHHHHHHHHhcCCCcChHHHHHHHH
Q psy2654 1688 QVLMRAL--RDFNIPKIITEDLQVFMGLIGDLFPA----LDVP-----RKRDIDFEKQVRQATIDMKLQPEDSFILKVVQ 1756 (1949)
Q Consensus 1688 ~~l~~a~--~~~~~~~l~~~d~~~~~~l~~~~fp~----~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~ 1756 (1949)
.++..|+ +..+.|++.. ...|..-+++..|. +... ++.+..-...+++++.+ .-.|..|..+
T Consensus 619 Rai~~a~leris~~~kllt--ke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~-----~i~~P~kyp~ 691 (952)
T KOG0735|consen 619 RAIHEAFLERISNGPKLLT--KELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEE-----VIEWPSKYPQ 691 (952)
T ss_pred HHHHHHHHHHhccCcccch--HHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHH-----HHhccccchH
Confidence 3344444 3444554332 34566667777662 2221 12232222233333322 2357778888
Q ss_pred HHHHHh--cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHh
Q psy2654 1757 LVELFA--VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQA 1834 (1949)
Q Consensus 1757 l~~~l~--~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~ 1834 (1949)
+|.... .+.||+|+||||||||.+..++|... .++.-++...||+..|-..+ ...+|+..
T Consensus 692 if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKGPElL~KyIGaS--------Eq~vR~lF 753 (952)
T KOG0735|consen 692 IFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKGPELLSKYIGAS--------EQNVRDLF 753 (952)
T ss_pred HHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecCHHHHHHHhccc--------HHHHHHHH
Confidence 898655 45799999999999999999988755 23344566678888776554 55666655
Q ss_pred hcCCCCCcEEE-EcC---------CCCccchhhH-Hhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1835 QSTGDGPKWMV-MDG---------DIDPMWIESL-NTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1835 ~~~~~~~~Wiv-~Dg---------~~d~~w~e~l-n~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
........+|+ ||. -=.+.+.++. |.+| |.--.| .-+-++-.|.-..-+-||.+
T Consensus 754 ~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl-----------~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 754 ERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL-----------DGVYILAATSRPDLIDPALL 821 (952)
T ss_pred HHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc-----------ceEEEEEecCCccccCHhhc
Confidence 44444334454 562 1122233332 3333 432222 34556667776777777775
No 34
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.94 E-value=4.5e-08 Score=133.20 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=83.5
Q ss_pred CCCcChHHHHHHHHHHHHHhc--------CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC----CccCcccc
Q psy2654 1743 KLQPEDSFILKVVQLVELFAV--------RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP----KAVTNDEL 1810 (1949)
Q Consensus 1743 ~l~~~~~~~~k~~~l~~~l~~--------~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p----~~~~~~el 1810 (1949)
.+...+..+..+......... ...++++||||+|||++.++|+..+..... .+.+++- .......|
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~--~~i~~d~s~~~~~~~~~~l 643 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDED--AMVRIDMSEYMEKHSVARL 643 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCC--cEEEEechhhcccchHHHh
Confidence 455566667766665554432 235899999999999999999998743322 2222222 22233456
Q ss_pred cccccCCCCCcc-cChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEE
Q psy2654 1811 FGIINPSTREWK-DGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFE 1887 (1949)
Q Consensus 1811 ~G~~~~~~~~w~-dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE 1887 (1949)
+|.- |...+.. .|.|+..++... ..-|+||. .+++.....|-.+||+++ ++-..|..+...+ . +|+=
T Consensus 644 ~g~~-~g~~g~~~~g~l~~~v~~~p------~~vlllDeieka~~~v~~~Ll~~l~~g~-l~d~~g~~vd~rn-~-iiI~ 713 (852)
T TIGR03346 644 IGAP-PGYVGYEEGGQLTEAVRRKP------YSVVLFDEVEKAHPDVFNVLLQVLDDGR-LTDGQGRTVDFRN-T-VIIM 713 (852)
T ss_pred cCCC-CCccCcccccHHHHHHHcCC------CcEEEEeccccCCHHHHHHHHHHHhcCc-eecCCCeEEecCC-c-EEEE
Confidence 6643 1111222 467887777531 25688994 568888888888887766 3555676666643 2 4445
Q ss_pred eCCC
Q psy2654 1888 ISNL 1891 (1949)
Q Consensus 1888 ~~~l 1891 (1949)
|+|+
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 5555
No 35
>KOG0736|consensus
Probab=98.87 E-value=7.4e-09 Score=127.17 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=72.9
Q ss_pred HHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhcccccc-cCcccccccccccc
Q psy2654 1424 LSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGLAQ-TGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1424 l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~~~-~g~w~~~de~~~l~ 1496 (1949)
+.+.++-..|.+++||+|||||-++|++|--+.-.++.+..-+ +-+.+.+.++|.-|-+ .-|.+.|||++.+.
T Consensus 698 fssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 698 FSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred hhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccC
Confidence 3445666788999999999999999999999999999886655 6667888888887754 58999999999985
Q ss_pred ch---------hhHHHHHHHHHHHHHHH
Q psy2654 1497 VE---------VLSVVAVQVKSVLDSVK 1515 (1949)
Q Consensus 1497 ~~---------~ls~~~~~~~~i~~~~~ 1515 (1949)
+. |+..+.+|+..=.+++.
T Consensus 778 P~RG~sGDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 778 PNRGRSGDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred ccCCCCCCccccHHHHHHHHHHHhhccc
Confidence 54 67766666555556665
No 36
>KOG0730|consensus
Probab=98.86 E-value=5.3e-08 Score=119.10 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=59.0
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhccccccc-Cccccccccccccch
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGLAQT-GAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~~~~-g~w~~~de~~~l~~~ 1498 (1949)
++...|++++||+|||||+++|++|...|.+++.+.+-+ +-+.+.+..+|.-+-++ -+.+.|||++.+..+
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~ 542 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGS 542 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhc
Confidence 345589999999999999999999999999999998866 45577888889877554 688899998876543
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.74 E-value=1e-07 Score=128.76 Aligned_cols=68 Identities=26% Similarity=0.285 Sum_probs=55.3
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC------CCHhhhhhhcccccc-cCccccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ------MDYRSCGNIYKGLAQ-TGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~------~~~~~l~~~~~g~~~-~g~w~~~de~~~l~~ 1497 (1949)
...|.+++||+|||||++++++|..+|.+++.+++++- .+.+.+..+|.-+.+ ..+.+.|||++.+.+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc
Confidence 34678899999999999999999999999999998763 334567777776644 468999999998754
No 38
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.68 E-value=7e-07 Score=121.48 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=34.8
Q ss_pred CCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhh
Q psy2654 1435 APAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNI 1476 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~ 1476 (1949)
+++||+|+|||++++.||+.+ +.+++.+++++-++...+.+.
T Consensus 543 lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l 587 (821)
T CHL00095 543 LFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKL 587 (821)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHh
Confidence 488999999999999999988 578999999887665555443
No 39
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.61 E-value=8.3e-07 Score=121.03 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=71.6
Q ss_pred cCCCCCCCCCCCcchhHHHHHHhh----------cceEEEeeCCccc---hhh-----hccccchhhcc--cCccccccc
Q psy2654 1045 MGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQM---DYR-----SCGNIYKGLAQ--TGAWGCFDE 1104 (1949)
Q Consensus 1045 ~~~~~~gp~gtGKt~~~~~la~~l----------g~~~~~~~~~~~~---~~~-----~~~~~~~g~~~--~g~w~~fde 1104 (1949)
..+.+.||+|+|||.+++.||..+ |..++.++.+..+ .+. .+.+++.-+.. .+.-+.+||
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDE 274 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDE 274 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 446679999999999999999987 6667776654432 111 23333433322 246778888
Q ss_pred cccchh----hHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccCc
Q psy2654 1105 FNRISV----EVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPD 1180 (1949)
Q Consensus 1105 ~~~l~~----~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~pd 1180 (1949)
++.+.. +--...+..|...+. ..++.+ +-+|..+.|...-++.+.+.+.|.+|.+..|+
T Consensus 275 ih~l~~~g~~~~~~d~~~~Lk~~l~-----~g~i~~------------IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~ 337 (852)
T TIGR03346 275 LHTLVGAGKAEGAMDAGNMLKPALA-----RGELHC------------IGATTLDEYRKYIEKDAALERRFQPVFVDEPT 337 (852)
T ss_pred HHHhhcCCCCcchhHHHHHhchhhh-----cCceEE------------EEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCC
Confidence 886641 100011111111110 011111 12233334433346678899999999988998
Q ss_pred hhHHHHHh
Q psy2654 1181 FALICEIM 1188 (1949)
Q Consensus 1181 ~~~i~~~~ 1188 (1949)
......++
T Consensus 338 ~~~~~~iL 345 (852)
T TIGR03346 338 VEDTISIL 345 (852)
T ss_pred HHHHHHHH
Confidence 77776653
No 40
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.60 E-value=5.2e-07 Score=121.70 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=35.1
Q ss_pred CCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhh
Q psy2654 1435 APAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNI 1476 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~ 1476 (1949)
+++||+|+|||++++.||+.| +..++.+||++-++.....++
T Consensus 600 lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l 644 (852)
T TIGR03345 600 LLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRL 644 (852)
T ss_pred EEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccc
Confidence 578999999999999999999 568999999986665555444
No 41
>KOG0741|consensus
Probab=98.59 E-value=2.8e-07 Score=108.65 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=56.1
Q ss_pred HHHhccCCCCCCCCCCChhHHHHHHHHHhc-ceEEEEeCCC------CCCHhhhhhhcccc---------cccCcccccc
Q psy2654 1427 SLHLNMGGAPAGPAGTGKTETTKDLGKAIG-IMVYVFNCSE------QMDYRSCGNIYKGL---------AQTGAWGCFD 1490 (1949)
Q Consensus 1427 al~~~~~~~l~G~~g~GKt~~v~~la~~lg-~~~~~~n~~~------~~~~~~l~~~~~g~---------~~~g~w~~~d 1490 (1949)
.+.+-.|.+|+||||||||-++++++++|+ |.--++|..+ +.+.+.+.+.|+-| .+.=..+.||
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFD 331 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFD 331 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEeh
Confidence 456778899999999999999999999995 5666777655 34455666666543 4555778999
Q ss_pred ccccccchhh
Q psy2654 1491 EFNRISVEVL 1500 (1949)
Q Consensus 1491 e~~~l~~~~l 1500 (1949)
|++.++...-
T Consensus 332 EiDAICKqRG 341 (744)
T KOG0741|consen 332 EIDAICKQRG 341 (744)
T ss_pred hhHHHHHhcC
Confidence 9998865543
No 42
>KOG0733|consensus
Probab=98.55 E-value=4.3e-07 Score=109.20 Aligned_cols=102 Identities=22% Similarity=0.280 Sum_probs=78.8
Q ss_pred HHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhcccc-cccCccccccccccccch-
Q psy2654 1427 SLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGL-AQTGAWGCFDEFNRISVE- 1498 (1949)
Q Consensus 1427 al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~-~~~g~w~~~de~~~l~~~- 1498 (1949)
.+....|++|+||+|||||-++|++|+--|-.++.+..-+ +-+...+..+|.-+ ++.-|.+.|||++.|.+.
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R 620 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRR 620 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCccc
Confidence 3455778999999999999999999999999999987665 44566677777655 667899999999988554
Q ss_pred ------hhHHHHHHHHHHHHHHHhhhccccccccch
Q psy2654 1499 ------VLSVVAVQVKSVLDSVKMRKSRFNFMGESS 1528 (1949)
Q Consensus 1499 ------~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~ 1528 (1949)
+-+.+..||..=.+++..|...|.+..++.
T Consensus 621 ~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR 656 (802)
T KOG0733|consen 621 SDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR 656 (802)
T ss_pred CCCCchhHHHHHHHHHHHhcccccccceEEEeecCC
Confidence 455666666666777777777776655444
No 43
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.53 E-value=8.5e-07 Score=107.51 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcc-----eEEEEeCCCCCCHhhhhhhcccccccCcccccccc
Q psy2654 1418 DRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGI-----MVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEF 1492 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~-----~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~ 1492 (1949)
+..+..+..++..+...+++||+|||||++++.+|..++. ++..+.+++..++..+.+-+.. .|. .+
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP---~~v-----gy 252 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP---NGV-----GF 252 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC---CCC-----Ce
Confidence 5566778888888999999999999999999999999863 4455667777776665432211 110 01
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhh-HHHHHHHHHhHhhhhhhccc
Q psy2654 1493 NRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEV-LSVVAVQVKSVLDSVKMRKS 1571 (1949)
Q Consensus 1493 ~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~-l~~~~~~~~~~~~~l~~~~~ 1571 (1949)
... ..++-.+. ..|. .-..++.+.++||+||+.++- ..-+-+.++.-.. ....
T Consensus 253 ~~~-~G~f~~~~------~~A~----------------~~p~~~~vliIDEINRani~kiFGel~~lLE~~~r---g~~~ 306 (459)
T PRK11331 253 RRK-DGIFYNFC------QQAK----------------EQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKR---GENW 306 (459)
T ss_pred Eec-CchHHHHH------HHHH----------------hcccCCcEEEEehhhccCHHHhhhhhhhhcccccc---cccc
Confidence 100 11111010 0000 011346777888888887553 3333333322100 0000
Q ss_pred cce--e---ccceEEEecCeeEEEEeCCCCCCCCCChhhHhhccccccccc-CCHHHHHHHHHhhhch--hhHHHHHHHH
Q psy2654 1572 RFN--F---MGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVV-PDFALICEIMLVSEGF--QEARLLSRKF 1643 (1949)
Q Consensus 1572 ~~~--~---~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~-pD~~~i~e~~L~~~gf--~~~~~la~k~ 1643 (1949)
.+. + ++..+.+.+|+.+++|||..+.+-..+-.+|+.+|+-|.|.. .|...+-. .+...+. .....+++++
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~-~l~~~~~~~~~~~~l~~~l 385 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRN-FLLNKKAEPSFVESLCQKM 385 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHH-HHHhcccCchhHHHHHHHH
Confidence 111 1 135678899999999999977666678999999999888764 23333333 3332221 2234556666
Q ss_pred HHHHHHHH
Q psy2654 1644 ITLYSLCK 1651 (1949)
Q Consensus 1644 ~~~~~~~~ 1651 (1949)
..+-..++
T Consensus 386 ~~LN~~I~ 393 (459)
T PRK11331 386 NELNQEIS 393 (459)
T ss_pred HHHHHHHH
Confidence 66555554
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.52 E-value=3.6e-06 Score=114.19 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred hcCCCCCCCCCCCcchhHHHHHHhh----------cceEEEeeCCccchhh--------hccccchhhcc--cCcccccc
Q psy2654 1044 NMGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQMDYR--------SCGNIYKGLAQ--TGAWGCFD 1103 (1949)
Q Consensus 1044 ~~~~~~~gp~gtGKt~~~~~la~~l----------g~~~~~~~~~~~~~~~--------~~~~~~~g~~~--~g~w~~fd 1103 (1949)
...+.+.||+|+|||.+++.||..+ |..++.++.+....-. .+..++.-+.. ...-+.+|
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID 278 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3356789999999999999999998 6778877776543211 13333433322 23567778
Q ss_pred ccccchhhH----HHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccC
Q psy2654 1104 EFNRISVEV----LSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVP 1179 (1949)
Q Consensus 1104 e~~~l~~~~----Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~p 1179 (1949)
|++.+...- -...+..|...+. ...+.+ +-+|..+.|....++.+.|.+.|..|.+..|
T Consensus 279 Eih~l~~~~~~~~~~d~~~~lkp~l~-----~g~l~~------------IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP 341 (857)
T PRK10865 279 ELHTMVGAGKADGAMDAGNMLKPALA-----RGELHC------------VGATTLDEYRQYIEKDAALERRFQKVFVAEP 341 (857)
T ss_pred cHHHhccCCCCccchhHHHHhcchhh-----cCCCeE------------EEcCCCHHHHHHhhhcHHHHhhCCEEEeCCC
Confidence 877664110 0001111111110 011111 2223333444445677889999999999999
Q ss_pred chhHHHHHh
Q psy2654 1180 DFALICEIM 1188 (1949)
Q Consensus 1180 d~~~i~~~~ 1188 (1949)
+......++
T Consensus 342 ~~~~~~~iL 350 (857)
T PRK10865 342 SVEDTIAIL 350 (857)
T ss_pred CHHHHHHHH
Confidence 887776643
No 45
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.52 E-value=6.8e-07 Score=108.32 Aligned_cols=154 Identities=15% Similarity=0.224 Sum_probs=105.0
Q ss_pred HHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcc-cccCCCccCcccccccccCCC--CCcccChHHHHHH
Q psy2654 1755 VQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMY-NDLEPKAVTNDELFGIINPST--REWKDGLFSCLIR 1831 (1949)
Q Consensus 1755 ~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~-~~i~p~~~~~~el~G~~~~~~--~~w~dG~l~~~~r 1831 (1949)
..+..++..+..|+++||||+|||++++.||..+........+ .+-.+...+..++.|.+.|.. ..|.+|+|.++.+
T Consensus 185 e~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~ 264 (459)
T PRK11331 185 ETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQ 264 (459)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHH
Confidence 3456667778999999999999999999999877321111111 112334556677787776653 3588999999988
Q ss_pred HHhhcCCCCCcEEEEcCCC----CccchhhHHhhhcCCc-----ceecc----CCceeecCCCceEEEEeCCCC----CC
Q psy2654 1832 EQAQSTGDGPKWMVMDGDI----DPMWIESLNTVMDDNK-----VLTLA----SNERIALTPSMRLLFEISNLR----TA 1894 (1949)
Q Consensus 1832 ~~~~~~~~~~~Wiv~Dg~~----d~~w~e~ln~~lddn~-----~l~l~----~ge~i~~~~~~~~ifE~~~l~----~a 1894 (1949)
++... +....++|+|.-. +..+=| +-++|+..+ .+.|+ +++.+.+|+|+++|-.+..-. ..
T Consensus 265 ~A~~~-p~~~~vliIDEINRani~kiFGe-l~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 265 QAKEQ-PEKKYVFIIDEINRANLSKVFGE-VMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred HHHhc-ccCCcEEEEehhhccCHHHhhhh-hhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhc
Confidence 86543 3345899999433 333333 345666432 23332 246899999999988885443 68
Q ss_pred ChhhhccceEEEecCC
Q psy2654 1895 TPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1895 sPa~vsr~~~v~~~~~ 1910 (1949)
.+|..-|+..|.+.+.
T Consensus 343 D~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 343 DYALRRRFSFIDIEPG 358 (459)
T ss_pred cHHHHhhhheEEecCC
Confidence 9999999999999985
No 46
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.5e-06 Score=107.21 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=74.8
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC----CccCcccccccccCCCCCcc-cChHHHHHHHHhhcCCCCC
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP----KAVTNDELFGIINPSTREWK-DGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p----~~~~~~el~G~~~~~~~~w~-dG~l~~~~r~~~~~~~~~~ 1841 (1949)
.+++||||+|||-+.++||..+-... ....+++- ..++...|.|.= |.--++. -|.|+.++|+-- +
T Consensus 524 FlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHsVSrLIGaP-PGYVGyeeGG~LTEaVRr~P------y 594 (786)
T COG0542 524 FLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHSVSRLIGAP-PGYVGYEEGGQLTEAVRRKP------Y 594 (786)
T ss_pred EEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHHHHHHhCCC-CCCceeccccchhHhhhcCC------C
Confidence 57799999999999999999883221 22223321 334445666651 1111222 479999998851 2
Q ss_pred cEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC
Q psy2654 1842 KWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL 1891 (1949)
Q Consensus 1842 ~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l 1891 (1949)
.-|+||. -.+|.+..-|-.||||++ ||=+.|.++-+.+. +|+=|+|+
T Consensus 595 SViLlDEIEKAHpdV~nilLQVlDdGr-LTD~~Gr~VdFrNt--iIImTSN~ 643 (786)
T COG0542 595 SVILLDEIEKAHPDVFNLLLQVLDDGR-LTDGQGRTVDFRNT--IIIMTSNA 643 (786)
T ss_pred eEEEechhhhcCHHHHHHHHHHhcCCe-eecCCCCEEeccee--EEEEeccc
Confidence 5688885 358899999999999876 57788888877665 44445554
No 47
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.39 E-value=2.3e-07 Score=91.85 Aligned_cols=113 Identities=22% Similarity=0.238 Sum_probs=68.5
Q ss_pred CCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc------------cccchhhcccCccccccccccchhhHHHHH
Q psy2654 1049 PAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC------------GNIYKGLAQTGAWGCFDEFNRISVEVLSVV 1116 (1949)
Q Consensus 1049 ~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~------------~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i 1116 (1949)
+.|++|+|||++++.||+.+|..+..+.|.+.+...-+ -++-.|-..+ .+..+||+||++..+.|.+
T Consensus 4 leg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~-~ill~DEiNrappktQsAl 82 (131)
T PF07726_consen 4 LEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFT-NILLADEINRAPPKTQSAL 82 (131)
T ss_dssp EES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-S-SEEEEETGGGS-HHHHHHH
T ss_pred eECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhh-ceeeecccccCCHHHHHHH
Confidence 46999999999999999999999999999765433222 1123344443 3789999999999998876
Q ss_pred HHHHHHHHHHHhhhccccccccCccccccccceeeecCC-CCCCCCCCchhHhhhc
Q psy2654 1117 AVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALF 1171 (1949)
Q Consensus 1117 ~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~-~~~~~~~lp~~l~~~f 1171 (1949)
.+.+. -.+....|....+...+.+++|+|| ++.|.-.||+.+...|
T Consensus 83 Leam~---------Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 83 LEAME---------ERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHH---------HSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHH---------cCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 54433 1256677888899999999999999 7889999999998877
No 48
>KOG0735|consensus
Probab=98.28 E-value=1.7e-06 Score=105.85 Aligned_cols=86 Identities=23% Similarity=0.305 Sum_probs=64.5
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhcccccc-cCccccccccccccch--
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGLAQ-TGAWGCFDEFNRISVE-- 1498 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~~~-~g~w~~~de~~~l~~~-- 1498 (1949)
++...|.+|+||+|||||-++.++|...+..++.+..-+ +-+.+.+..+|..|.. .-|.+.||||+.+.+.
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRG 777 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRG 777 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccC
Confidence 466788999999999999999999999999999988766 3445666666665544 4799999999998654
Q ss_pred -----hhHHHHHHHHHHHHH
Q psy2654 1499 -----VLSVVAVQVKSVLDS 1513 (1949)
Q Consensus 1499 -----~ls~~~~~~~~i~~~ 1513 (1949)
|-..+..|+..=.++
T Consensus 778 hDsTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 778 HDSTGVTDRVVNQLLTELDG 797 (952)
T ss_pred CCCCCchHHHHHHHHHhhcc
Confidence 444444444433343
No 49
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.26 E-value=2.4e-06 Score=104.26 Aligned_cols=155 Identities=23% Similarity=0.255 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc---------------cccchhhc
Q psy2654 1030 TDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC---------------GNIYKGLA 1094 (1949)
Q Consensus 1030 ~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~---------------~~~~~g~~ 1094 (1949)
.+.....+..++.......+.||+|+|||.+++.+|+.+|..++.++|++.+....+ .++..|-.
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl 108 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPL 108 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCc
Confidence 344555566677888888899999999999999999999999999999988763322 22334444
Q ss_pred ccCc--cccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCc-cccccccceeeecCC-CCCCCCCCchhHhhh
Q psy2654 1095 QTGA--WGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGEN-IKLVTTVGMFITMNP-GYAGRAELPENLKAL 1170 (1949)
Q Consensus 1095 ~~g~--w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~-i~l~~~~~~f~t~n~-~~~~~~~lp~~l~~~ 1170 (1949)
..+. -+++||+|+.+.++.+++...+... +++.-|.. +.+...+.+.+|.|| .+.|...+|+.++..
T Consensus 109 ~~~~~~ill~DEInra~p~~q~aLl~~l~e~---------~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldR 179 (329)
T COG0714 109 FAAVRVILLLDEINRAPPEVQNALLEALEER---------QVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDR 179 (329)
T ss_pred ccccceEEEEeccccCCHHHHHHHHHHHhCc---------EEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhh
Confidence 4443 7899999999999988876554432 45566666 888999999999999 577888999999999
Q ss_pred c-cccccccCchhHHHHHhhhccc
Q psy2654 1171 F-RPCAMVVPDFALICEIMLVSEG 1193 (1949)
Q Consensus 1171 f-r~i~~~~pd~~~i~~~~l~~~g 1193 (1949)
| -.+.+.-|+...-..+++...+
T Consensus 180 f~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 180 FLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEEEecCCCCchHHHHHHHHhCc
Confidence 9 7777777755544444443333
No 50
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.19 E-value=8e-05 Score=93.84 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=54.0
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhcccc-cccCcccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGL-AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~-~~~g~w~~~de~~~l~ 1496 (1949)
....|.+++||+|||||.+++++|..+|.|++.++|+. +.+...+.++|.-+ ....+.+.+||++.+.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAF 331 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhh
Confidence 44577889999999999999999999999999999865 23345566666644 3467888899998653
No 51
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.12 E-value=0.00018 Score=90.74 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=67.3
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
...+||+|+||||||||.+++++|... +..+..++ ...++|.|...+ +.-+..+++.+.. ..+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~-----~~~l~~~~vGes----e~~l~~~f~~A~~---~~P 319 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLD-----VGKLFGGIVGES----ESRMRQMIRIAEA---LSP 319 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEE-----hHHhcccccChH----HHHHHHHHHHHHh---cCC
Confidence 345799999999999999999999876 22233333 345666664332 1233344433321 122
Q ss_pred cEEEEcCC----------CCccchhh-HHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cce-EEEe
Q psy2654 1842 KWMVMDGD----------IDPMWIES-LNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RAG-ILYI 1907 (1949)
Q Consensus 1842 ~Wiv~Dg~----------~d~~w~e~-ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~~-~v~~ 1907 (1949)
.-|.+|.. .|..+... ++.+| +.-.+ ...++.+|..|.+...+-||.+- |+- ++|+
T Consensus 320 ~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL------~~l~~----~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v 389 (489)
T CHL00195 320 CILWIDEIDKAFSNSESKGDSGTTNRVLATFI------TWLSE----KKSPVFVVATANNIDLLPLEILRKGRFDEIFFL 389 (489)
T ss_pred cEEEehhhhhhhccccCCCCchHHHHHHHHHH------HHHhc----CCCceEEEEecCChhhCCHHHhCCCcCCeEEEe
Confidence 34555631 01111111 11111 10000 12456778888889999999874 663 6677
Q ss_pred cCCC
Q psy2654 1908 NPQD 1911 (1949)
Q Consensus 1908 ~~~~ 1911 (1949)
+..+
T Consensus 390 ~lP~ 393 (489)
T CHL00195 390 DLPS 393 (489)
T ss_pred CCcC
Confidence 7544
No 52
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.07 E-value=8.1e-06 Score=99.99 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcc--eEEEEeCCCCC
Q psy2654 1418 DRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGI--MVYVFNCSEQM 1468 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~--~~~~~n~~~~~ 1468 (1949)
+.....+..|+-.+..+++.||||||||++++.||+.+++ ++..++|.-.+
T Consensus 26 e~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ftt 78 (498)
T PRK13531 26 SHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFST 78 (498)
T ss_pred HHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecC
Confidence 5567778888899999999999999999999999999875 55666665433
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.06 E-value=1.1e-05 Score=88.37 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=50.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHH
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVV 1503 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~ 1503 (1949)
.+++||||+||||++.-+|+.+|.++..++...-....++..++..+ +.|..+.+||++|++..+-..+
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l-~~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL-KEGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT---TT-EEEECTCCC--HHHHHHH
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc-CCCcEEEEechhhccHHHHHHH
Confidence 56899999999999999999999999999885544456677776654 5688899999999998877765
No 54
>KOG3595|consensus
Probab=98.05 E-value=9.9e-05 Score=105.40 Aligned_cols=430 Identities=17% Similarity=0.207 Sum_probs=238.3
Q ss_pred CCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHH-hcceEEEEeCCCCCCHhhhhhhcccccc---cC
Q psy2654 1409 PRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKA-IGIMVYVFNCSEQMDYRSCGNIYKGLAQ---TG 1484 (1949)
Q Consensus 1409 ~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~-lg~~~~~~n~~~~~~~~~l~~~~~g~~~---~g 1484 (1949)
..+|.|-.|-|.=..+..-+..+.+.+++||+|+|||-++...... --+.++.+|.+..++...++.++..-+. .|
T Consensus 105 ~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~~~k~~~~ 184 (1395)
T KOG3595|consen 105 DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRSG 184 (1395)
T ss_pred ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHHHHHhccc
Confidence 5566777777777777777777799999999999999888665554 3334455888888887776666544321 12
Q ss_pred ccc---------cccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHH
Q psy2654 1485 AWG---------CFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVV 1555 (1949)
Q Consensus 1485 ~w~---------~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~ 1555 (1949)
.|+ .+||+|.--.+.... -+++..+
T Consensus 185 ~~~~~~~~~~~~f~ddinmp~~~~yg~----------------------------------------------q~~~~~l 218 (1395)
T KOG3595|consen 185 NYGPPLGKKLVLFVDDINMPALDKYGD----------------------------------------------QPPIELL 218 (1395)
T ss_pred CCCCCCCceeEEEEeccCCchhhhcCC----------------------------------------------ccHHHHH
Confidence 221 223333321111110 0000000
Q ss_pred HHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHH---Hhhh-
Q psy2654 1556 AVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIM---LVSE- 1631 (1949)
Q Consensus 1556 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~---L~~~- 1631 (1949)
.+-++ ..+-+.........--+.-++..|||+.+||..+|+.|+..|..+++..|+......|+ +...
T Consensus 219 rq~~e--------~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r~f~~~~~~~~~~~sl~~if~~~~~~~~ 290 (1395)
T KOG3595|consen 219 RQMLE--------HGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLRHFLIVSLNYPSQESLTQIFNTILTGHL 290 (1395)
T ss_pred HHHHH--------hceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHHHeeeEeeCCCChhhHHHHHHHHHhccc
Confidence 00000 00000000112223446778999999999999999999999999999999877644444 3322
Q ss_pred -----chhhHHHHHHHHHHHHHHHHHHhc---CCCCCCCchhhHHHHHHhhcccccCCCCCcHHH----HHHHHHhhhcC
Q psy2654 1632 -----GFQEARLLSRKFITLYSLCKELLS---KQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQ----VLMRALRDFNI 1699 (1949)
Q Consensus 1632 -----gf~~~~~la~k~~~~~~~~~~~~s---~~~~~~~~lr~l~~vl~~a~~~~~~~~~~~e~~----~l~~a~~~~~~ 1699 (1949)
+......++...+.+|..+..-+. ...||-|++|.+.++........ ......... ..-.+. ..+.
T Consensus 291 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~-~~~~~~~~~l~~~~~~e~~-rv~~ 368 (1395)
T KOG3595|consen 291 RFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAV-SEALLTLEDLIRLWVHEAI-RVFA 368 (1395)
T ss_pred CccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccC-cHhhccHHHHHHHHHHHHH-Hhhh
Confidence 234466788889999998888765 34579999999988876554433 221111111 112222 3333
Q ss_pred CCC-CcccHHHHHHhH----hccCCCCC-----------CCC-CCchh------HHHHHHH--------HHHhcCCCcCh
Q psy2654 1700 PKI-ITEDLQVFMGLI----GDLFPALD-----------VPR-KRDID------FEKQVRQ--------ATIDMKLQPED 1748 (1949)
Q Consensus 1700 ~~l-~~~d~~~~~~l~----~~~fp~~~-----------~~~-~~~~~------~~~~~~~--------~~~~~~l~~~~ 1748 (1949)
.++ ...|.+.+...+ ...|+... .+. ..+.. +...+.. ....+.++...
T Consensus 369 drlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~ 448 (1395)
T KOG3595|consen 369 DRLVDDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESHKIYEEVLSVELLRGVLEAYLKQFNIEEIRPMHLVLFR 448 (1395)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccccccCchHhHHHHHHHHHHHHHHHhhhccCCCceeeeH
Confidence 444 334544444433 23343321 100 11111 1111111 11123444455
Q ss_pred HHHHHHHHHHHHHhcCc-EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHH
Q psy2654 1749 SFILKVVQLVELFAVRH-SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFS 1827 (1949)
Q Consensus 1749 ~~~~k~~~l~~~l~~~~-~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~ 1827 (1949)
.-...+.++-+.+.... ..+++|-.|+||.++.+..+...+ ...+..-.++. |+ ...|. +.+-
T Consensus 449 ~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~----~~~fq~~~~~~------y~-----~~~~~-~dl~ 512 (1395)
T KOG3595|consen 449 DAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFING----LSVFQIEITRS------YN-----IEDFR-EDLK 512 (1395)
T ss_pred HHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhcc----ccceeeecccc------Cc-----HHHHH-HHHH
Confidence 66666777777777765 479999999999999998776431 11111112222 11 12233 3455
Q ss_pred HHHHHHhhcCCCCCcEEEEcCC-CCccchhhHHhhhcCCcceeccCCc---------------ee---------------
Q psy2654 1828 CLIREQAQSTGDGPKWMVMDGD-IDPMWIESLNTVMDDNKVLTLASNE---------------RI--------------- 1876 (1949)
Q Consensus 1828 ~~~r~~~~~~~~~~~Wiv~Dg~-~d~~w~e~ln~~lddn~~l~l~~ge---------------~i--------------- 1876 (1949)
.+.|++.... ...-|++=|.. .+..++|.||.+|.......|-.++ .-
T Consensus 513 ~~~r~~g~~~-~~~~f~~~~~~i~~e~fle~ln~ll~~gevp~lf~~de~~~~~~~~~~~~~~~~~~~~~s~e~~~~~f~ 591 (1395)
T KOG3595|consen 513 AILRKAGLKN-KETVFILTDSQIKDESFLEDLNNLLASGEVPNLFTGDELDEIKMELAGEMGEEAKLILDSRENLYLFFI 591 (1395)
T ss_pred HHHHHhccCC-CceEEeechHHHHHHHHHHHHHHHHhCCCCCCccchHHHHHHHHHHHHHhhhhccccCccHHHHHHHHH
Confidence 6777764332 22244443422 2888999999999755443322111 10
Q ss_pred -ecCCCceEEEEeCCCCC-------CChhhhccceEEEecCCC
Q psy2654 1877 -ALTPSMRLLFEISNLRT-------ATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1877 -~~~~~~~~ifE~~~l~~-------asPa~vsr~~~v~~~~~~ 1911 (1949)
..-.+.++++-+....+ -.||.++||++.|+++-+
T Consensus 592 ~~~~~~l~~vl~~~~~g~~~~~r~~~~pal~~~~~i~w~~~w~ 634 (1395)
T KOG3595|consen 592 FRVRRNLHVVLSVSPVGDAFRLRARKFPALVNRCTIDWFDSWP 634 (1395)
T ss_pred HHHHHhcceeEEeCchhhHHHHHHHhChhhhccchhhhcccCC
Confidence 11123344454444443 589999999999998643
No 55
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.02 E-value=3.4e-06 Score=88.45 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=54.1
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhcccccccC--ccccccccccccchh
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGLAQTG--AWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~~~~g--~w~~~de~~~l~~~~ 1499 (1949)
+++||+|||||++++.+|+.+|.+++.++|++-. ..+.+..++.-+...+ +.+++||++.+....
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred EEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 5889999999999999999999999999998865 3445666666665554 889999999987765
No 56
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.00 E-value=5.7e-05 Score=91.44 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=67.3
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhc--------ccc--
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIY--------KGL-- 1480 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~--------~g~-- 1480 (1949)
+|.+.++...+..+.....++++.|++||||+.+++.+-.... .|++.+||..-.+ ..+...+ .|+
T Consensus 5 S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~ 83 (329)
T TIGR02974 5 SNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQK 83 (329)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCccc
Confidence 5778889999999999999999999999999999998865554 6999999986433 3333322 222
Q ss_pred -------cccCccccccccccccchhhHHHHHH
Q psy2654 1481 -------AQTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1481 -------~~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
...|.-+++||++.++.++...+...
T Consensus 84 ~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~ 116 (329)
T TIGR02974 84 RHQGRFERADGGTLFLDELATASLLVQEKLLRV 116 (329)
T ss_pred ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHH
Confidence 11355577788888887776665433
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.99 E-value=0.00011 Score=89.71 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=53.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHH
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSV 1502 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~ 1502 (1949)
+.+++||+|||||++++.+|+.+|..+...+++.......+.+++..+ ..|..+++||+++++......
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~vl~IDEi~~l~~~~~e~ 121 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNL-EEGDVLFIDEIHRLSPVVEEI 121 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhc-ccCCEEEEecHhhcchHHHHH
Confidence 356899999999999999999999999888776555555566665543 457888899999988755443
No 58
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.98 E-value=8.3e-06 Score=95.51 Aligned_cols=206 Identities=22% Similarity=0.252 Sum_probs=122.4
Q ss_pred CCcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcce---EEEeeCCccchhhhccccchhhccc-
Q psy2654 1021 TPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIM---VYVFNCSEQMDYRSCGNIYKGLAQT- 1096 (1949)
Q Consensus 1021 ~~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~---~~~~~~~~~~~~~~~~~~~~g~~~~- 1096 (1949)
.+.+|.|..+.|.-.-+..-+..+.+..+.||+|||||.+++++-+.+... ...++|+..+....+.+++.+....
T Consensus 10 ~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~ 89 (272)
T PF12775_consen 10 NEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKR 89 (272)
T ss_dssp ---T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECEC
T ss_pred ceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcC
Confidence 467899999999999999999999999999999999999999977666543 3467888877766664444322211
Q ss_pred ---------C--ccccccccccchhhHHHHHHHHHHHHHHHHhhhc--ccccccc-CccccccccceeeecCCCCCCCCC
Q psy2654 1097 ---------G--AWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRK--SRFNFMG-ENIKLVTTVGMFITMNPGYAGRAE 1162 (1949)
Q Consensus 1097 ---------g--~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~--~rf~f~~-~~i~l~~~~~~f~t~n~~~~~~~~ 1162 (1949)
| .-..+|++|.-..+.=.. +.. .+-+|+-. .-||-.. -+..-..++.+.++|||+ +|+..
T Consensus 90 ~~~~~gP~~~k~lv~fiDDlN~p~~d~ygt--q~~---iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~-~Gr~~ 163 (272)
T PF12775_consen 90 RGRVYGPPGGKKLVLFIDDLNMPQPDKYGT--QPP---IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT-GGRNP 163 (272)
T ss_dssp TTEEEEEESSSEEEEEEETTT-S---TTS----HH---HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST-TT--S
T ss_pred CCCCCCCCCCcEEEEEecccCCCCCCCCCC--cCH---HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC-CCCCC
Confidence 1 134568888766443211 111 12222221 1222211 122333556677899995 48888
Q ss_pred CchhHhhhccccccccCchhHHHHH---hhh----ccchhh-----hhhhhhhHHHHhhhhhhhccc---ccccccccch
Q psy2654 1163 LPENLKALFRPCAMVVPDFALICEI---MLV----SEGFQE-----ARLLSRKFITLYSLCKELLSK---QDHYDWGLRA 1227 (1949)
Q Consensus 1163 lp~~l~~~fr~i~~~~pd~~~i~~~---~l~----~~g~~~-----~~~l~~kl~~~~~~~~~~~s~---~~~~~~glr~ 1227 (1949)
+++-+.+.|.-+++..|+.+.+..| ++. ..+|.. +..+..-.+.+|..+.+.+.+ ..||-|.+|.
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRD 243 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRD 243 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHH
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHH
Confidence 9999999999999999986544332 222 234532 344556677888888776633 3699999999
Q ss_pred hhhee
Q psy2654 1228 IKSVL 1232 (1949)
Q Consensus 1228 ~~~v~ 1232 (1949)
+..++
T Consensus 244 lsrv~ 248 (272)
T PF12775_consen 244 LSRVF 248 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 59
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.97 E-value=6.9e-05 Score=90.89 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=99.2
Q ss_pred ccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccc---------
Q psy2654 1413 ITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGL--------- 1480 (1949)
Q Consensus 1413 ~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~--------- 1480 (1949)
-+|.+.++...+..+.....++++.|++||||+.+++.+-... +.|++.+||..-.+ ..+...+-|.
T Consensus 11 ~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~ 89 (326)
T PRK11608 11 EANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQ 89 (326)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCcc
Confidence 4578899999999999999999999999999999999886655 46999999998543 3333332221
Q ss_pred --------cccCccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhH
Q psy2654 1481 --------AQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVL 1552 (1949)
Q Consensus 1481 --------~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l 1552 (1949)
...|.-+++||++.++..+...+...+..
T Consensus 90 ~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~------------------------------------------- 126 (326)
T PRK11608 90 KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEY------------------------------------------- 126 (326)
T ss_pred cccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhc-------------------------------------------
Confidence 12244467777777777766655433210
Q ss_pred HHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCC---CCCCCChhhHhhcccccccccCCHHH
Q psy2654 1553 SVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGY---AGRAELPENLKALFRPCAMVVPDFAL 1622 (1949)
Q Consensus 1553 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~---~g~~~LP~~lk~~fr~v~~~~pD~~~ 1622 (1949)
+.+.-.|..-..+.++++.+|+|..- .....+.+.|-.+|..+.+..|.+..
T Consensus 127 ------------------~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLRe 181 (326)
T PRK11608 127 ------------------GELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRE 181 (326)
T ss_pred ------------------CcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhh
Confidence 11111122234456799999998743 33456777788888776666665553
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.97 E-value=2.4e-05 Score=83.76 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHh--ccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhc----------ccccc
Q psy2654 1418 DRCYITLSQSLHL--NMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIY----------KGLAQ 1482 (1949)
Q Consensus 1418 ~r~~~~l~~al~~--~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~----------~g~~~ 1482 (1949)
++....+..++.. ..+.++.||+|+|||++++.+++.+ +.+++.++|++........... .....
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKA 83 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccC
Confidence 4556666666666 5567799999999999999999999 9999999998865533322111 11223
Q ss_pred cCccccccccccccchh
Q psy2654 1483 TGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1483 ~g~w~~~de~~~l~~~~ 1499 (1949)
.+..+++||++.++...
T Consensus 84 ~~~~lilDe~~~~~~~~ 100 (151)
T cd00009 84 KPGVLFIDEIDSLSRGA 100 (151)
T ss_pred CCeEEEEeChhhhhHHH
Confidence 34566666666664433
No 61
>PRK06851 hypothetical protein; Provisional
Probab=97.96 E-value=0.00011 Score=88.40 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=27.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCC
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQ 1467 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~ 1467 (1949)
.+|.|++|||||++++.++..+ |..+-.+-|+..
T Consensus 33 ~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d 69 (367)
T PRK06851 33 FILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSD 69 (367)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 4588999999999999999888 566667777664
No 62
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.7e-05 Score=99.11 Aligned_cols=89 Identities=24% Similarity=0.309 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhccCCC-----------CCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhcc-----
Q psy2654 1418 DRCYITLSQSLHLNMGGA-----------PAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYK----- 1478 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~-----------l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~----- 1478 (1949)
+.....++.|++..+.|+ +.||||+|||+++|+||..|. ..+++|++|+-+.-.+++|.+-
T Consensus 497 d~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGY 576 (786)
T COG0542 497 DEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGY 576 (786)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCC
Confidence 556778888888766543 479999999999999999999 9999999999888777766532
Q ss_pred -ccccc-----------CccccccccccccchhhHHHHHH
Q psy2654 1479 -GLAQT-----------GAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1479 -g~~~~-----------g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
|--+. =+.+.|||+++.-++|+-.+-|-
T Consensus 577 VGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQV 616 (786)
T COG0542 577 VGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQV 616 (786)
T ss_pred ceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHH
Confidence 22222 24567777777777777665443
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.90 E-value=1.4e-05 Score=99.18 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=50.7
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCcccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~ 1496 (1949)
....|++++||+|||||++++++|+.+|.+++.++|++-.. ...+..+|.-+. ...+.+++||++.+.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~ 237 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIA 237 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhh
Confidence 34567889999999999999999999999999999987422 233333444332 245788899998774
No 64
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.90 E-value=0.0001 Score=94.99 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=36.3
Q ss_pred ccceEEEecCeeEEEEeCCCCC---CC------CCChhhHhhccccc--ccccCCHH---HHHHHHH
Q psy2654 1576 MGENIKLVTTVGMFITMNPGYA---GR------AELPENLKALFRPC--AMVVPDFA---LICEIML 1628 (1949)
Q Consensus 1576 ~~~~i~~~~~~~~f~tmnp~~~---g~------~~LP~~lk~~fr~v--~~~~pD~~---~i~e~~L 1628 (1949)
.|....++..|++++|+||-+. +. -.||+.|.++|=-+ .+..||.. .|++..+
T Consensus 334 ~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 334 AGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 4667788899999999999432 22 27999999999443 33456655 3444443
No 65
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.88 E-value=3.4e-05 Score=104.63 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=48.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhh---------------hhcccccccCccccccccccccch
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG---------------NIYKGLAQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~---------------~~~~g~~~~g~w~~~de~~~l~~~ 1498 (1949)
.+++||+|||||++++.+|+.+|++++.++|+...+...+. +.+.-+......+++||++++...
T Consensus 350 lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~ 429 (775)
T TIGR00763 350 LCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS 429 (775)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc
Confidence 56899999999999999999999999999998766654432 111112223457888999888754
No 66
>PRK04195 replication factor C large subunit; Provisional
Probab=97.86 E-value=6.2e-05 Score=96.80 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=53.0
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccc-------cCccccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQ-------TGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~-------~g~w~~~de~~~l~~ 1497 (1949)
..+.+++||+|||||++++.+|+.+|.+++.+|+++..+...+.+++..++. .+..+++||++.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 3457799999999999999999999999999999987766666665554432 345677888887765
No 67
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=8.1e-05 Score=96.67 Aligned_cols=137 Identities=19% Similarity=0.207 Sum_probs=79.4
Q ss_pred HHHHHHHHHHH--HhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHH
Q psy2654 1750 FILKVVQLVEL--FAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFS 1827 (1949)
Q Consensus 1750 ~~~k~~~l~~~--l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~ 1827 (1949)
+..+...++.. +....|+||+||||||||.+.+++|..+ + .+.-++...+|++.|...+ .
T Consensus 260 ~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~-----~~fi~v~~~~l~sk~vGes--------e 321 (494)
T COG0464 260 TPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----R-----SRFISVKGSELLSKWVGES--------E 321 (494)
T ss_pred hHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----C-----CeEEEeeCHHHhccccchH--------H
Confidence 33444445553 4556799999999999999999999743 1 1122233335666554443 6
Q ss_pred HHHHHHhhcCC-CCCcEEEEcC---------CC-CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCCh
Q psy2654 1828 CLIREQAQSTG-DGPKWMVMDG---------DI-DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATP 1896 (1949)
Q Consensus 1828 ~~~r~~~~~~~-~~~~Wiv~Dg---------~~-d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asP 1896 (1949)
+.+|+...... .....|.||. +. +......+|.+|.- -+.+.-..++.+|-.|.....+-|
T Consensus 322 k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~--------~d~~e~~~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 322 KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTE--------LDGIEKAEGVLVIAATNRPDDLDP 393 (494)
T ss_pred HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHH--------hcCCCccCceEEEecCCCccccCH
Confidence 77776665544 3446666672 11 11112333333311 111233344666777777888888
Q ss_pred hhhc--cc-eEEEecCCCC
Q psy2654 1897 ATVS--RA-GILYINPQDL 1912 (1949)
Q Consensus 1897 a~vs--r~-~~v~~~~~~~ 1912 (1949)
|..- |. .++|+.+.+.
T Consensus 394 a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 394 ALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred hhcccCccceEeecCCCCH
Confidence 8776 64 5788887654
No 68
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.79 E-value=7.9e-05 Score=90.58 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=55.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHH
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSV 1502 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~ 1502 (1949)
.+++||+|||||++++.+|+.+|..+...+++.......+...+..+ ..+.++++||+++++......
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL-EEGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhc-ccCCEEEEehHhhhCHHHHHH
Confidence 57999999999999999999999999888877665666666665543 457789999999998876544
No 69
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.78 E-value=0.00015 Score=79.55 Aligned_cols=137 Identities=15% Similarity=0.244 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHHHhcC----cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcc
Q psy2654 1747 EDSFILKVVQLVELFAVR----HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWK 1822 (1949)
Q Consensus 1747 ~~~~~~k~~~l~~~l~~~----~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~ 1822 (1949)
-+..+.+..-+.++...+ ..++++||||+||||+.+++|+.+. ..+...+-.+++.
T Consensus 29 Q~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i~k--------------- 88 (233)
T PF05496_consen 29 QEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAIEK--------------- 88 (233)
T ss_dssp -HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--S---------------
T ss_pred cHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhhhh---------------
Confidence 334444444455555443 3699999999999999999998772 2222221111110
Q ss_pred cChHHHHHHHHhhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcc-eeccCC---ceeecC-CCceEEEEeCCCCCCC
Q psy2654 1823 DGLFSCLIREQAQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKV-LTLASN---ERIALT-PSMRLLFEISNLRTAT 1895 (1949)
Q Consensus 1823 dG~l~~~~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~-l~l~~g---e~i~~~-~~~~~ifE~~~l~~as 1895 (1949)
-|=+..++.+. .....+.+|.. ++...-|.|-+.|+|... +.+..| ..+.++ |++.+|=.|+.....|
T Consensus 89 ~~dl~~il~~l-----~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls 163 (233)
T PF05496_consen 89 AGDLAAILTNL-----KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLS 163 (233)
T ss_dssp CHHHHHHHHT-------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTS
T ss_pred HHHHHHHHHhc-----CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccc
Confidence 11123333332 12356777853 577788999999998776 444433 344444 5688999999999999
Q ss_pred hhhhccceEEE-ec
Q psy2654 1896 PATVSRAGILY-IN 1908 (1949)
Q Consensus 1896 Pa~vsr~~~v~-~~ 1908 (1949)
+..-+|+|++. ++
T Consensus 164 ~pLrdRFgi~~~l~ 177 (233)
T PF05496_consen 164 SPLRDRFGIVLRLE 177 (233)
T ss_dssp HCCCTTSSEEEE--
T ss_pred hhHHhhcceecchh
Confidence 99999999985 54
No 70
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.76 E-value=0.00011 Score=95.03 Aligned_cols=68 Identities=19% Similarity=0.313 Sum_probs=54.4
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhccccc-ccCccccccccccccch
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGLA-QTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~~-~~g~w~~~de~~~l~~~ 1498 (1949)
..|.+++||+|||||++++++|..+|.+++.++|++ +...+.+..+|..+. ...+.+++||++.+...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~ 162 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQ 162 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhc
Confidence 457889999999999999999999999999999876 223455666776654 34689999999987643
No 71
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.76 E-value=8.5e-05 Score=99.40 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=49.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhh---hhccc---------ccccC---ccccccccccccch
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG---NIYKG---------LAQTG---AWGCFDEFNRISVE 1498 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~---~~~~g---------~~~~g---~w~~~de~~~l~~~ 1498 (1949)
.+++||+|+|||++++.+|+.+|++++.++++...|...+. +.+.| +...| ..+++||+++++..
T Consensus 352 i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~ 431 (784)
T PRK10787 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD 431 (784)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc
Confidence 45889999999999999999999999999998877765553 22222 22322 35778888877665
Q ss_pred h
Q psy2654 1499 V 1499 (1949)
Q Consensus 1499 ~ 1499 (1949)
.
T Consensus 432 ~ 432 (784)
T PRK10787 432 M 432 (784)
T ss_pred c
Confidence 3
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=97.75 E-value=0.00014 Score=88.46 Aligned_cols=77 Identities=25% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHHhccC--CCCCCCCCCChhHHHHHHHHHh-c----ceEEEEeCCCCCCHhhhhhhcccccc--------cCccc
Q psy2654 1423 TLSQSLHLNMG--GAPAGPAGTGKTETTKDLGKAI-G----IMVYVFNCSEQMDYRSCGNIYKGLAQ--------TGAWG 1487 (1949)
Q Consensus 1423 ~l~~al~~~~~--~~l~G~~g~GKt~~v~~la~~l-g----~~~~~~n~~~~~~~~~l~~~~~g~~~--------~g~w~ 1487 (1949)
.+...+..+.. .+++||+|||||++++.+|+.+ | ..++.+|.++......+...+...++ ....+
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kvi 103 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIV 103 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEE
Confidence 34444444433 3588999999999999999987 3 34666777765554444433322211 12345
Q ss_pred cccccccccchh
Q psy2654 1488 CFDEFNRISVEV 1499 (1949)
Q Consensus 1488 ~~de~~~l~~~~ 1499 (1949)
++||++.++...
T Consensus 104 iiDE~d~lt~~a 115 (319)
T PLN03025 104 ILDEADSMTSGA 115 (319)
T ss_pred EEechhhcCHHH
Confidence 667777665543
No 73
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.74 E-value=1.8e-05 Score=85.74 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCCCCCCCChhHHHHHHHHHhcc----eEEEEeCCCCCC----Hhhhhhhcc------cccccCccccccccccccc---
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGI----MVYVFNCSEQMD----YRSCGNIYK------GLAQTGAWGCFDEFNRISV--- 1497 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~----~~~~~n~~~~~~----~~~l~~~~~------g~~~~g~w~~~de~~~l~~--- 1497 (1949)
++.||+|+|||++++.||+.++- +++++||++-.+ ...+.+.+. |..+. ..++||||+++.+
T Consensus 7 ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~-gVVllDEidKa~~~~~ 85 (171)
T PF07724_consen 7 LLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG-GVVLLDEIDKAHPSNS 85 (171)
T ss_dssp EEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-TEEEEETGGGCSHTTT
T ss_pred EEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-hhhhhHHHhhcccccc
Confidence 57899999999999999999995 999999999777 333332222 22333 4899999999999
Q ss_pred --------hhhHHHHHHH
Q psy2654 1498 --------EVLSVVAVQV 1507 (1949)
Q Consensus 1498 --------~~ls~~~~~~ 1507 (1949)
.|...+-+.+
T Consensus 86 ~~~~v~~~~V~~~LL~~l 103 (171)
T PF07724_consen 86 GGADVSGEGVQNSLLQLL 103 (171)
T ss_dssp TCSHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHh
Confidence 7777665443
No 74
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.73 E-value=6.7e-05 Score=81.12 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=65.6
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhccccc---------
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKGLA--------- 1481 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~g~~--------- 1481 (1949)
.|.+.++...+-.+.....+++++|++||||+.+++.+-.... .|++.+||+.- +.+.+...+-|..
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~~~~~~~ 83 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL-PEELLESELFGHEKGAFTGARS 83 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HHHHHHHHHEBCSSSSTTTSS
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh-hcchhhhhhhcccccccccccc
Confidence 4677888888888889999999999999999999999988765 59999999964 4444444443321
Q ss_pred --------ccCccccccccccccchhhHHHHHH
Q psy2654 1482 --------QTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1482 --------~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
..|.-+++||++.||+++...+.+.
T Consensus 84 ~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~ 116 (168)
T PF00158_consen 84 DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRV 116 (168)
T ss_dssp EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHH
T ss_pred ccCCceeeccceEEeecchhhhHHHHHHHHHHH
Confidence 2355567777777777776665433
No 75
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.72 E-value=0.00014 Score=85.71 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhc-------ceEEEEeCCCCCC------HhhhhhhcccccccCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIG-------IMVYVFNCSEQMD------YRSCGNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg-------~~~~~~n~~~~~~------~~~l~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
+.+++||||||||++++.+|+.+. .+++.++|++-.. ...+..++..+ .|..+.+||++.+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a--~~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA--LGGVLFIDEAYSLAR 119 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc--cCCEEEEechhhhcc
Confidence 346899999999999999998762 2555666655221 11122222222 256777888887753
No 76
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.70 E-value=0.0002 Score=85.02 Aligned_cols=202 Identities=18% Similarity=0.182 Sum_probs=118.0
Q ss_pred HHHhccC-CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhh---hhhcccccccCcccccc----ccccccch
Q psy2654 1427 SLHLNMG-GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC---GNIYKGLAQTGAWGCFD----EFNRISVE 1498 (1949)
Q Consensus 1427 al~~~~~-~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l---~~~~~g~~~~g~w~~~d----e~~~l~~~ 1498 (1949)
|+.-..| +++.|+-|||||+++++||..|.---++..|.-+.|...= -..+++-.....|+--. +|--+|..
T Consensus 33 av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ 112 (423)
T COG1239 33 AVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLG 112 (423)
T ss_pred hcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCc
Confidence 4554444 4577999999999999999999988888766544443221 11111111111343222 12223322
Q ss_pred hhHHHHHHHH--HHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceec
Q psy2654 1499 VLSVVAVQVK--SVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM 1576 (1949)
Q Consensus 1499 ~ls~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 1576 (1949)
+-.- -.+. .+..+++.....| .-|-++ .-|+.-..+||+|+++..+..+ +++++..+...+..+
T Consensus 113 ateD--rvvGslDi~ka~~~g~~af---~PGlLa--~AnRGIlYvDEvnlL~d~lvd~-------LLd~aaeG~n~vere 178 (423)
T COG1239 113 ATED--RLVGSLDIEKALEEGPKAF---QPGLLA--RANRGILYVDEVNLLDDHLVDA-------LLDVAAEGVNDVERE 178 (423)
T ss_pred cchh--hhccccCHHHHHhcCcccc---CCcchh--hccCCEEEEeccccccHHHHHH-------HHHHHHhCCceeeeC
Confidence 2111 0111 2344444322222 112222 2233444559999999776543 445556666788888
Q ss_pred cceEEEecCeeEEEEeCCCCCCCCCChhhHhhccccc-ccc-cCCHHHHHHHHHhhhchh-hHHHHHHHHHH
Q psy2654 1577 GENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPC-AMV-VPDFALICEIMLVSEGFQ-EARLLSRKFIT 1645 (1949)
Q Consensus 1577 ~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v-~~~-~pD~~~i~e~~L~~~gf~-~~~~la~k~~~ 1645 (1949)
|..|...-+|-+.+||||. ..+|-+.|+.+|-.. ... ..|...-++|+....-|. ++..+..++..
T Consensus 179 Gisi~hpa~fvligTmNPE---eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~ 247 (423)
T COG1239 179 GISIRHPARFLLIGTMNPE---EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYAD 247 (423)
T ss_pred ceeeccCccEEEEeecCcc---ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999888899999999998 557889999998653 333 347777777777666552 23334444433
No 77
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.70 E-value=7.8e-05 Score=92.01 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=50.2
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhcccc-cccCcccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGL-AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~-~~~g~w~~~de~~~l~ 1496 (1949)
....|++++||+|||||++++++|..++.+++.+.|++-. ....+..+|.-+ ....+.+++||++.+.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA 251 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhc
Confidence 3457889999999999999999999999999999886521 123344444433 2346788888888764
No 78
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.69 E-value=0.00013 Score=87.40 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhccc-ccc
Q psy2654 1536 GAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFR-PCA 1614 (1949)
Q Consensus 1536 g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr-~v~ 1614 (1949)
|.-.++||+|++++.+.+.+...++. ....+...|........|.+.+|+||.. .++|+.|..+|- .|.
T Consensus 129 ~GiL~lDEInrl~~~~q~~Lle~mee-------~~v~v~r~G~~~~~p~rfiviAt~NP~e---~~l~~aLldRF~~~v~ 198 (334)
T PRK13407 129 RGYLYIDEVNLLEDHIVDLLLDVAQS-------GENVVEREGLSIRHPARFVLVGSGNPEE---GELRPQLLDRFGLSVE 198 (334)
T ss_pred CCeEEecChHhCCHHHHHHHHHHHHc-------CCeEEEECCeEEecCCCEEEEecCCccc---CCCCHHHHhhcceEEE
Confidence 34567799999998888766664432 2333445677777888999999999953 359999999985 345
Q ss_pred cccCCH
Q psy2654 1615 MVVPDF 1620 (1949)
Q Consensus 1615 ~~~pD~ 1620 (1949)
+..|..
T Consensus 199 v~~~~~ 204 (334)
T PRK13407 199 VRSPRD 204 (334)
T ss_pred cCCCCc
Confidence 554433
No 79
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.68 E-value=7.5e-05 Score=91.29 Aligned_cols=59 Identities=31% Similarity=0.367 Sum_probs=40.9
Q ss_pred CCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhccccc------ccCccccccccccc
Q psy2654 1436 PAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLA------QTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1436 l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~------~~g~w~~~de~~~l 1495 (1949)
++||+|+|||++++.+++.+|.+++.+||++ .....+...+...+ ..+..+++||++.+
T Consensus 48 l~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 48 HSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred eeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 4899999999999999999999999999988 33333222222111 12345666776665
No 80
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.64 E-value=0.00044 Score=84.95 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=46.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH----hhhhhhcccc---------cccCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY----RSCGNIYKGL---------AQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~----~~l~~~~~g~---------~~~g~w~~~de~~~l~~ 1497 (1949)
..++.||||||||++++.||+.+|.|+..++|+.-+.. .+...++.++ ...+..+++||+++++.
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 46688999999999999999999999999998763221 1122222222 12344688888888876
No 81
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.64 E-value=0.00011 Score=76.82 Aligned_cols=114 Identities=14% Similarity=0.207 Sum_probs=68.5
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEEEE
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWMVM 1846 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~ 1846 (1949)
|+|+||||||||++++.+|+.+ ...+..++... +.+.+...+ ..-+..+++++.... .+.-|++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~-----~~~~~~~~~----~~~i~~~~~~~~~~~--~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSE-----LISSYAGDS----EQKIRDFFKKAKKSA--KPCVLFI 64 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTH-----HHTSSTTHH----HHHHHHHHHHHHHTS--TSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccccccccc-----ccccccccc----ccccccccccccccc--cceeeee
Confidence 7899999999999999999977 22233333332 222221111 112334444432222 3477888
Q ss_pred cCC--CC-----------ccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh-ccceEEE
Q psy2654 1847 DGD--ID-----------PMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV-SRAGILY 1906 (1949)
Q Consensus 1847 Dg~--~d-----------~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v-sr~~~v~ 1906 (1949)
|+- +- ...+..|...+|....- .+++.+|+.+.+...+.|+.. +||....
T Consensus 65 De~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~~i~~~l~~~rf~~~i 128 (132)
T PF00004_consen 65 DEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPDKIDPALLRSRFDRRI 128 (132)
T ss_dssp ETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGGGSCHHHHSTTSEEEE
T ss_pred ccchhcccccccccccccccccceeeecccccccc----------cccceeEEeeCChhhCCHhHHhCCCcEEE
Confidence 841 11 12345555555542221 566889999999999999999 9998653
No 82
>CHL00176 ftsH cell division protein; Validated
Probab=97.61 E-value=7.1e-05 Score=97.47 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=52.3
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhccccc-ccCccccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
...|++++||+|||||.+++++|..+|.|++.++|++-. ..+.+..+|.-+. ...+.+++||++.+..
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 289 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR 289 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh
Confidence 356788999999999999999999999999999998632 2233444555443 3467899999997754
No 83
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.59 E-value=0.0003 Score=89.74 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=66.4
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHH-----------hcceEEEEeCCCCCCHhhhhhh------
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKA-----------IGIMVYVFNCSEQMDYRSCGNI------ 1476 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~-----------lg~~~~~~n~~~~~~~~~l~~~------ 1476 (1949)
+|.+.++...+..+-....++++.|++||||+.+++.+-.. -+.|++.+||..-.+ ..+..-
T Consensus 225 S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseLFG~~~ 303 (538)
T PRK15424 225 SPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAELFGYEE 303 (538)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHhcCCcc
Confidence 46788888888888889999999999999999999999766 567999999987433 222222
Q ss_pred --cccc----------cccCccccccccccccchhhHHHH
Q psy2654 1477 --YKGL----------AQTGAWGCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1477 --~~g~----------~~~g~w~~~de~~~l~~~~ls~~~ 1504 (1949)
|.|+ ...|.-+.+||++.+|.++...+.
T Consensus 304 gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl 343 (538)
T PRK15424 304 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 343 (538)
T ss_pred ccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHH
Confidence 2232 123445778888888877766653
No 84
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00031 Score=86.91 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=76.8
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhcc---CCCcccc-----c-CCCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK---KKPMYND-----L-EPKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~---~~~~~~~-----i-~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
...|++++.||+|+||||+++.+|+.+.-.. ..++-.+ + ...+.+.-+ +++.++...|- +..++..
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~----~~~~~~~~v~~-ir~i~~~ 110 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE----IDAASRTKVEE-MREILDN 110 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE----ecccccCCHHH-HHHHHHH
Confidence 3457899999999999999999999873110 0111000 0 001111111 12221111111 2222222
Q ss_pred HhhcC-CCCCcEEEEcCCCCccchhhHHhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1833 QAQST-GDGPKWMVMDGDIDPMWIESLNTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1833 ~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
....+ ....+.+|+|.. +..--+..|.+| ++ .|+++++||-++++..+.|+..|||-.+.+.
T Consensus 111 ~~~~p~~~~~kviIIDEa-~~l~~~a~naLLk~lEe-------------~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~ 176 (363)
T PRK14961 111 IYYSPSKSRFKVYLIDEV-HMLSRHSFNALLKTLEE-------------PPQHIKFILATTDVEKIPKTILSRCLQFKLK 176 (363)
T ss_pred HhcCcccCCceEEEEECh-hhcCHHHHHHHHHHHhc-------------CCCCeEEEEEcCChHhhhHHHHhhceEEeCC
Confidence 22222 234578999972 222112333333 33 3567889999999999999999999999888
Q ss_pred CCCC-CchhhHHhhh
Q psy2654 1909 PQDL-GWNPYVLSWT 1922 (1949)
Q Consensus 1909 ~~~~-~w~~~~~~w~ 1922 (1949)
+-.. .+..++..++
T Consensus 177 ~l~~~el~~~L~~~~ 191 (363)
T PRK14961 177 IISEEKIFNFLKYIL 191 (363)
T ss_pred CCCHHHHHHHHHHHH
Confidence 6532 2333444433
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00032 Score=88.57 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1421 YITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1421 ~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
...+..++..+..+ +++||+|||||++++.+|+.++.
T Consensus 23 ~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 23 KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 33455566666553 68999999999999999999864
No 86
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0019 Score=83.00 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcceEE--EEeCCCCCCHhhhhhhcccccccCccccccccc
Q psy2654 1419 RCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGIMVY--VFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFN 1493 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~~~~--~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~ 1493 (1949)
.....|..++..+.. .+++||.|||||++++.||+.|+..-- .-.|.. +....++ ..|.+.-+-|+|
T Consensus 23 ~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~---C~sCr~I-----~~G~h~DviEID 94 (830)
T PRK07003 23 HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV---CRACREI-----DEGRFVDYVEMD 94 (830)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc---cHHHHHH-----hcCCCceEEEec
Confidence 344456666776542 358899999999999999999984210 011111 1112222 123333344444
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccc
Q psy2654 1494 RISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRF 1573 (1949)
Q Consensus 1494 ~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 1573 (1949)
-.+..-+..+...+..+.. . ........+++||+..++.+..+.+-.. |..
T Consensus 95 Aas~rgVDdIReLIe~a~~----~-------------P~~gr~KVIIIDEah~LT~~A~NALLKt-------LEE----- 145 (830)
T PRK07003 95 AASNRGVDEMAALLERAVY----A-------------PVDARFKVYMIDEVHMLTNHAFNAMLKT-------LEE----- 145 (830)
T ss_pred ccccccHHHHHHHHHHHHh----c-------------cccCCceEEEEeChhhCCHHHHHHHHHH-------HHh-----
Confidence 3332222222222221110 0 0001123355688888876543322111 111
Q ss_pred eeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHH---Hhhhchh
Q psy2654 1574 NFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIM---LVSEGFQ 1634 (1949)
Q Consensus 1574 ~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~---L~~~gf~ 1634 (1949)
..+++.++++.|- ...||..++++|..+.+..+....|.+.+ +..+|+.
T Consensus 146 --------PP~~v~FILaTtd----~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 146 --------PPPHVKFILATTD----PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred --------cCCCeEEEEEECC----hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 1223444444432 23589999999999999888777766554 3345543
No 87
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.56 E-value=0.0025 Score=82.00 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHh-------c---ceEEEEeCCCCCCHhh
Q psy2654 1418 DRCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAI-------G---IMVYVFNCSEQMDYRS 1472 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~l-------g---~~~~~~n~~~~~~~~~ 1472 (1949)
++....|..++....++ .++|+||||||.+|+.+.+.| + ..++.+||....+...
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 44445555566543342 379999999999999998877 2 4567899977555443
No 88
>PLN03025 replication factor C subunit; Provisional
Probab=97.56 E-value=0.00031 Score=85.43 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=71.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC----CCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST----GDG 1840 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~----~~~ 1840 (1949)
..++++||||+||||+++++|+.+........+..+|+. +..| -.++-..++...... ...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s-----d~~~----------~~~vr~~i~~~~~~~~~~~~~~ 99 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS-----DDRG----------IDVVRNKIKMFAQKKVTLPPGR 99 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc-----cccc----------HHHHHHHHHHHHhccccCCCCC
Confidence 358999999999999999999987321111111112221 1111 012333333332221 134
Q ss_pred CcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1841 PKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1841 ~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
.+.|++|.. +...--..|...++. .|++++++|-+.+...+.|+..|||.++.|.+-.
T Consensus 100 ~kviiiDE~d~lt~~aq~aL~~~lE~-------------~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~ 159 (319)
T PLN03025 100 HKIVILDEADSMTSGAQQALRRTMEI-------------YSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159 (319)
T ss_pred eEEEEEechhhcCHHHHHHHHHHHhc-------------ccCCceEEEEeCCccccchhHHHhhhcccCCCCC
Confidence 578888842 333334555555542 2456789998888889999999999999887643
No 89
>KOG0744|consensus
Probab=97.56 E-value=8.3e-05 Score=83.57 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=30.2
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcc---------eEEEEeCCC
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGI---------MVYVFNCSE 1466 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~---------~~~~~n~~~ 1466 (1949)
-++-.+++||||||||+++|+||+.|.. +++.+||+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs 221 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS 221 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH
Confidence 3455779999999999999999999865 456677766
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.54 E-value=7.8e-05 Score=92.51 Aligned_cols=67 Identities=24% Similarity=0.223 Sum_probs=46.1
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCcccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~ 1496 (1949)
...|.+++||+|||||++++++|+.++.+++.+.+++-.. ...+..+|.-+. ...+.+++||++.+.
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~ 228 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIA 228 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhc
Confidence 3456889999999999999999999999998887654211 111222332222 234578888887764
No 91
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.54 E-value=0.00034 Score=91.55 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=68.6
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhc--------ccc--
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIY--------KGL-- 1480 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~--------~g~-- 1480 (1949)
.|.+.++...+..+.....++++.||+||||+.+++.+.... +.|++.+||..-.+ ..+...+ .|+
T Consensus 202 s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~ 280 (534)
T TIGR01817 202 SPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIA 280 (534)
T ss_pred CHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCc
Confidence 477888888888888899999999999999999999999885 56999999987543 2232222 221
Q ss_pred -------cccCccccccccccccchhhHHHHHH
Q psy2654 1481 -------AQTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1481 -------~~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
...|.-+++||++.++.++...+...
T Consensus 281 ~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~ 313 (534)
T TIGR01817 281 QRKGRFELADGGTLFLDEIGEISPAFQAKLLRV 313 (534)
T ss_pred CCCCcccccCCCeEEEechhhCCHHHHHHHHHH
Confidence 12355678888888888777665443
No 92
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.52 E-value=0.00011 Score=79.36 Aligned_cols=121 Identities=22% Similarity=0.279 Sum_probs=78.7
Q ss_pred HHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCc----ccccccccC---CCCCcccChHH
Q psy2654 1755 VQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTN----DELFGIINP---STREWKDGLFS 1827 (1949)
Q Consensus 1755 ~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~----~el~G~~~~---~~~~w~dG~l~ 1827 (1949)
.++-.+.....+|+|+|++|+||+.+.+++.+...+. ...+..+|-.+++. .+|||.... .....+.|.|.
T Consensus 13 ~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~ 90 (168)
T PF00158_consen 13 EQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLE 90 (168)
T ss_dssp HHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHH
T ss_pred HHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhhhhcchhhhhhhccccccccccccccCCcee
Confidence 3344455667899999999999999988887743222 22344556555553 579997543 22345668775
Q ss_pred HHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC
Q psy2654 1828 CLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS 1889 (1949)
Q Consensus 1828 ~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~ 1889 (1949)
.+=. -=++||+ .+++..-..|-.+|+++....+.+. -..+.++|+|+-|+
T Consensus 91 ~A~~----------GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 91 QANG----------GTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTS 142 (168)
T ss_dssp HTTT----------SEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEES
T ss_pred eccc----------eEEeecchhhhHHHHHHHHHHHHhhchhcccccc--ccccccceEEeecC
Confidence 5321 3488895 5788899999999998876555444 36667999999885
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.52 E-value=0.00063 Score=87.93 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=29.8
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHh----------cceEEEEeCCC
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSE 1466 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~l----------g~~~~~~n~~~ 1466 (1949)
..+++++||+|||||++++.+.+.. +.+++.+||+.
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 4567899999999999999997643 35789999974
No 94
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.00033 Score=89.67 Aligned_cols=132 Identities=14% Similarity=0.290 Sum_probs=75.6
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----ccccCC-CccCcccccccccCCCCCcccCh--HHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDLEP-KAVTNDELFGIINPSTREWKDGL--FSCLI 1830 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i~p-~~~~~~el~G~~~~~~~~w~dG~--l~~~~ 1830 (1949)
...|.+|++||+|+||||+.++|++.++-..+ ..+ +..+.- .+. +++ .+|..+ ..|+ +-.++
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~---Dvi-EIDAas---~rgVDdIReLI 108 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV---DYV-EMDAAS---NRGVDEMAALL 108 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc---eEE-Eecccc---cccHHHHHHHH
Confidence 34688999999999999999999998842111 010 011110 111 111 122221 1232 22333
Q ss_pred HHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1831 REQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1831 r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
....... ....+.||+|.. |..=-+..|.+|.- | | ..|++++|||-+++...+.|..+|||-.+.|.+
T Consensus 109 e~a~~~P~~gr~KVIIIDEa-h~LT~~A~NALLKt---L-----E--EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~ 177 (830)
T PRK07003 109 ERAVYAPVDARFKVYMIDEV-HMLTNHAFNAMLKT---L-----E--EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQ 177 (830)
T ss_pred HHHHhccccCCceEEEEeCh-hhCCHHHHHHHHHH---H-----H--hcCCCeEEEEEECChhhccchhhhheEEEecCC
Confidence 3332222 234588999963 11111344544410 0 0 135689999999999999999999999999976
Q ss_pred CC
Q psy2654 1910 QD 1911 (1949)
Q Consensus 1910 ~~ 1911 (1949)
-.
T Consensus 178 Ls 179 (830)
T PRK07003 178 MP 179 (830)
T ss_pred cC
Confidence 43
No 95
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00038 Score=86.11 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....|..++..+..+ +++||+|||||++++.+|+.++.
T Consensus 26 iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 26 AIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 344577777777654 68999999999999999999875
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00043 Score=88.42 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----ccccCC-CccCcccccccccCCC
Q psy2654 1748 DSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDLEP-KAVTNDELFGIINPST 1818 (1949)
Q Consensus 1748 ~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i~p-~~~~~~el~G~~~~~~ 1818 (1949)
+..+..+......-...|..+++||+|+||||+.+++|+.++-..+ .++ +..+.. .+.+.-++ |+.+
T Consensus 22 ~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei----daas 97 (509)
T PRK14958 22 APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV----DAAS 97 (509)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE----cccc
Confidence 3344444444444456788999999999999999999999842211 110 111111 11111122 2221
Q ss_pred CCcccChHHHHHHHHhh----c-CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC
Q psy2654 1819 REWKDGLFSCLIREQAQ----S-TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL 1891 (1949)
Q Consensus 1819 ~~w~dG~l~~~~r~~~~----~-~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l 1891 (1949)
+ .| ..-+|+... . .....+.+|+|.. +.+.-...|-..|++ .|+++++||-|+|.
T Consensus 98 ~---~~--v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------------pp~~~~fIlattd~ 159 (509)
T PRK14958 98 R---TK--VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------------PPSHVKFILATTDH 159 (509)
T ss_pred c---CC--HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-------------cCCCeEEEEEECCh
Confidence 1 12 122333221 1 2235689999963 233222333333333 46789999999999
Q ss_pred CCCChhhhccceEEEecCCC-CCchhhHHhhhcc
Q psy2654 1892 RTATPATVSRAGILYINPQD-LGWNPYVLSWTDT 1924 (1949)
Q Consensus 1892 ~~asPa~vsr~~~v~~~~~~-~~w~~~~~~w~~~ 1924 (1949)
....|...|||-.+.+.+-. -.+..++..|+..
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 160 HKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred HhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 99988889999999988643 3344555556554
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.51 E-value=0.00036 Score=86.36 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcc--CCCCCCCCCCChhHHHHHHHHHhc-----ceEEEEeCCC
Q psy2654 1419 RCYITLSQSLHLNM--GGAPAGPAGTGKTETTKDLGKAIG-----IMVYVFNCSE 1466 (1949)
Q Consensus 1419 r~~~~l~~al~~~~--~~~l~G~~g~GKt~~v~~la~~lg-----~~~~~~n~~~ 1466 (1949)
.....+..++..+. +.+++||+|||||++++.+|+.+. .+++.+||++
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 34556666677666 566999999999999999999884 3467778765
No 98
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00024 Score=83.27 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=53.4
Q ss_pred HHHHhccC--CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccc-----cCccccccccccccch
Q psy2654 1426 QSLHLNMG--GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQ-----TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1426 ~al~~~~~--~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~-----~g~w~~~de~~~l~~~ 1498 (1949)
.++..+.. .++.|||||||||+++-+|..+|..+..+|... ...+.+..++..+.+ .+..+.+||++|++..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 44554333 458899999999999999999999999998654 245566666655521 1466777888888765
Q ss_pred hhH
Q psy2654 1499 VLS 1501 (1949)
Q Consensus 1499 ~ls 1501 (1949)
-..
T Consensus 120 QQD 122 (436)
T COG2256 120 QQD 122 (436)
T ss_pred hhh
Confidence 433
No 99
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.48 E-value=0.00026 Score=83.97 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=41.0
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcc-------eEEEEeCCCCCC------HhhhhhhcccccccCccccccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGI-------MVYVFNCSEQMD------YRSCGNIYKGLAQTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~-------~~~~~n~~~~~~------~~~l~~~~~g~~~~g~w~~~de~~~l 1495 (1949)
.+.++.||+|||||++++.+|+.+.. +++.++|++-.+ ...+.+++..+ .|.-+++||++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a--~~gvL~iDEi~~L 133 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA--MGGVLFIDEAYYL 133 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc--cCcEEEEechhhh
Confidence 45678999999999999999988743 688888754221 01111222211 3567788888876
No 100
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.47 E-value=0.00011 Score=90.81 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=48.1
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH----hhhhhhcccc---------cccCccccccccccccch
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY----RSCGNIYKGL---------AQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~----~~l~~~~~g~---------~~~g~w~~~de~~~l~~~ 1498 (1949)
.+.+++||+|||||++++.||+.++.|++.++|+.-+.. ..+.+++.++ ...+..+++||+++++..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 456789999999999999999999999999999864321 1223333222 124567788888888654
No 101
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.00061 Score=86.29 Aligned_cols=134 Identities=12% Similarity=0.185 Sum_probs=75.5
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---C----Cccc-----cc-CCCccCcccccccccCCCCCcccChHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---K----PMYN-----DL-EPKAVTNDELFGIINPSTREWKDGLFSC 1828 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~----~~~~-----~i-~p~~~~~~el~G~~~~~~~~w~dG~l~~ 1828 (1949)
...|++|+.||+|+||||+++++|++++-... . ++.. .+ +..+.+.-++ |..++.-.| -+-.
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ei----daas~~~vd-~Ir~ 115 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEI----DAASKTSVD-DIRR 115 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEe----eccCCCCHH-HHHH
Confidence 34579999999999999999999999843211 0 1100 01 1111122222 222211111 1122
Q ss_pred HHHHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEe
Q psy2654 1829 LIREQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYI 1907 (1949)
Q Consensus 1829 ~~r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~ 1907 (1949)
++..+...+ ....+-+|+|.. +..--+..|.+|.- |. ..|+++.+||-|++...+.|+..|||..+.+
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa-~~Ls~~a~naLLk~-----LE-----epp~~~vfI~aTte~~kI~~tI~SRc~~~ef 184 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEV-HMLSKGAFNALLKT-----LE-----EPPPHIIFIFATTEVQKIPATIISRCQRYDL 184 (507)
T ss_pred HHHHHHhccccCCcEEEEEECh-hhcCHHHHHHHHHH-----Hh-----hcCCCEEEEEEeCChHHhhHHHHhcceEEEc
Confidence 222222221 234578889974 22112445555421 11 2477889999999999999999999999988
Q ss_pred cCCC
Q psy2654 1908 NPQD 1911 (1949)
Q Consensus 1908 ~~~~ 1911 (1949)
.+-.
T Consensus 185 ~~ls 188 (507)
T PRK06645 185 RRLS 188 (507)
T ss_pred cCCC
Confidence 7543
No 102
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.45 E-value=0.00074 Score=72.96 Aligned_cols=140 Identities=18% Similarity=0.278 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCc-------ccccCCCccCcccccccccCCCCCccc
Q psy2654 1751 ILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPM-------YNDLEPKAVTNDELFGIINPSTREWKD 1823 (1949)
Q Consensus 1751 ~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~-------~~~i~p~~~~~~el~G~~~~~~~~w~d 1823 (1949)
+..+..++..=...|..++.||+|+||++++..+|+.+.-...... ...+..... .+++ .+.+.... .
T Consensus 6 ~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~--~d~~-~~~~~~~~--~ 80 (162)
T PF13177_consen 6 IELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH--PDFI-IIKPDKKK--K 80 (162)
T ss_dssp HHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C--TTEE-EEETTTSS--S
T ss_pred HHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC--cceE-EEeccccc--c
Confidence 3344444444455689999999999999999999998732211100 000110111 1111 01111110 0
Q ss_pred ChHHHHHHHHhh----cC-CCCCcEEEEcCCCCccchhhHHhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCC
Q psy2654 1824 GLFSCLIREQAQ----ST-GDGPKWMVMDGDIDPMWIESLNTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTAT 1895 (1949)
Q Consensus 1824 G~l~~~~r~~~~----~~-~~~~~Wiv~Dg~~d~~w~e~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~as 1895 (1949)
.+-..-+|+... .+ ....+-+|+|+. |..=.++-|.+| ++ .|+++++|+-++++..+-
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~a-d~l~~~a~NaLLK~LEe-------------pp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEA-DKLTEEAQNALLKTLEE-------------PPENTYFILITNNPSKIL 146 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETG-GGS-HHHHHHHHHHHHS-------------TTTTEEEEEEES-GGGS-
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehH-hhhhHHHHHHHHHHhcC-------------CCCCEEEEEEECChHHCh
Confidence 122333444322 22 234688888853 222224445444 43 356899999999999999
Q ss_pred hhhhccceEEEecC
Q psy2654 1896 PATVSRAGILYINP 1909 (1949)
Q Consensus 1896 Pa~vsr~~~v~~~~ 1909 (1949)
|...|||-.+++.+
T Consensus 147 ~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 147 PTIRSRCQVIRFRP 160 (162)
T ss_dssp HHHHTTSEEEEE--
T ss_pred HHHHhhceEEecCC
Confidence 99999999999985
No 103
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.44 E-value=0.0034 Score=85.46 Aligned_cols=132 Identities=15% Similarity=0.194 Sum_probs=79.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCcc-CcccccccccCCCCCcc---cChHHHHHHHHhhcCCCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAV-TNDELFGIINPSTREWK---DGLFSCLIREQAQSTGDG 1840 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~-~~~el~G~~~~~~~~w~---dG~l~~~~r~~~~~~~~~ 1840 (1949)
..++|+||||+|||++.+++|+.+. ..+.+++.... +..++.|.. ..|. .|-+...++.+ ...
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~-----~~~~~i~~~~~~~~~~i~g~~----~~~~g~~~g~i~~~l~~~----~~~ 414 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALN-----RKFVRFSLGGVRDEAEIRGHR----RTYVGAMPGRIIQGLKKA----KTK 414 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc-----CCeEEEeCCCcccHHHHcCCC----CceeCCCCchHHHHHHHh----CcC
Confidence 4699999999999999999999882 22333332222 234455431 1122 34455555544 223
Q ss_pred CcEEEEcCC--C----CccchhhHHhhhcC--CcceeccC-CceeecCCCceEEEEeCCCCCCChhhhccceEEEecCC
Q psy2654 1841 PKWMVMDGD--I----DPMWIESLNTVMDD--NKVLTLAS-NERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1841 ~~Wiv~Dg~--~----d~~w~e~ln~~ldd--n~~l~l~~-ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~ 1910 (1949)
...|+||.. + ...-...|-.+||+ |+.+.=.. +..+.+ +++-+|+.+..+..+.|+..+||-+|.+.+-
T Consensus 415 ~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~ 492 (775)
T TIGR00763 415 NPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSIDTIPRPLLDRMEVIELSGY 492 (775)
T ss_pred CCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCchhCCHHHhCCeeEEecCCC
Confidence 357899931 1 22224667777875 33221111 222333 3566778888888999999999999988863
No 104
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.43 E-value=0.00019 Score=90.22 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=27.4
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
+....|.+++||+|||||++++++|+.++.+
T Consensus 213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 213 LKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3456788999999999999999999999876
No 105
>CHL00181 cbbX CbbX; Provisional
Probab=97.42 E-value=0.00032 Score=83.09 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=39.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcc-------eEEEEeCCCCCC------HhhhhhhcccccccCcccccccccccc
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGI-------MVYVFNCSEQMD------YRSCGNIYKGLAQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~-------~~~~~n~~~~~~------~~~l~~~~~g~~~~g~w~~~de~~~l~ 1496 (1949)
.+++||||||||++++.+|+.+.. +++.+++++-.. .....+++.. ..|..+++||++.+.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~--a~ggVLfIDE~~~l~ 135 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK--AMGGVLFIDEAYYLY 135 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH--ccCCEEEEEccchhc
Confidence 468899999999999999998742 466666543110 0111122221 136688899998873
No 106
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.41 E-value=0.00093 Score=86.57 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=67.7
Q ss_pred ccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhh--------cccc-
Q psy2654 1413 ITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNI--------YKGL- 1480 (1949)
Q Consensus 1413 ~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~--------~~g~- 1480 (1949)
.+|.+.+++..+..+-....++++.|++||||+.+++.+-... +.|++.+||..-.+ ..+..- |.|+
T Consensus 192 ~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~ 270 (509)
T PRK05022 192 QSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAI 270 (509)
T ss_pred cCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCc
Confidence 3578889999999999999999999999999999999998874 57999999997543 222222 2222
Q ss_pred --------cccCccccccccccccchhhHHHH
Q psy2654 1481 --------AQTGAWGCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1481 --------~~~g~w~~~de~~~l~~~~ls~~~ 1504 (1949)
...|..+++||++.++.++...+.
T Consensus 271 ~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll 302 (509)
T PRK05022 271 SNRSGKFELADGGTLFLDEIGELPLALQAKLL 302 (509)
T ss_pred ccCCcchhhcCCCEEEecChhhCCHHHHHHHH
Confidence 123455778888888877666554
No 107
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.00053 Score=86.81 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....|..++..++- -+++||.|+|||++++.||+.|+.
T Consensus 24 vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 24 VVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34466666766653 367899999999999999999874
No 108
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.41 E-value=0.0006 Score=72.77 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=67.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccCh-HHHHHHHHhhcCCCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGL-FSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~-l~~~~r~~~~~~~~~~~ 1842 (1949)
..+++|+||||+|||++.+.++..+...+ ..+..++.........+. +..+. ....+.. ........
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~ 86 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVA--------ELFGHFLVRLLFE--LAEKAKPG 86 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHH--------HHhhhhhHhHHHH--hhccCCCe
Confidence 67899999999999999999998774221 112222222111110000 01110 0111111 11223457
Q ss_pred EEEEcCCC--CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC--CCChhhhccc-eEEEec
Q psy2654 1843 WMVMDGDI--DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR--TATPATVSRA-GILYIN 1908 (1949)
Q Consensus 1843 Wiv~Dg~~--d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~--~asPa~vsr~-~~v~~~ 1908 (1949)
.+++|..- ++...+.+..++..-.... ..++.+++|+.+.+-. ...+...+|| ..+.+.
T Consensus 87 ~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 87 VLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred EEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 89999643 2333444544444322211 3456788888887766 6677888998 555543
No 109
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00014 Score=90.86 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=54.9
Q ss_pred CCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhh------------hhhcccccccC---ccccccccccccchhh
Q psy2654 1436 PAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC------------GNIYKGLAQTG---AWGCFDEFNRISVEVL 1500 (1949)
Q Consensus 1436 l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l------------~~~~~g~~~~g---~w~~~de~~~l~~~~l 1500 (1949)
|+||||+|||++.+++|+++||+++++...---|.+.+ +|++.|+.++| -...+||+++++.+.-
T Consensus 355 LVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred EECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence 77999999999999999999999999998887777655 57777776665 4589999999987643
No 110
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.40 E-value=0.0011 Score=76.63 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHH--hccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccccccCcccccccc
Q psy2654 1418 DRCYITLSQSLH--LNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEF 1492 (1949)
Q Consensus 1418 ~r~~~~l~~al~--~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~ 1492 (1949)
...+..+-..+. ...+.+++||+|||||++++++++.+ |.+++.++|+.-.+.. ..++.. .+...-+++||+
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~-~~~~~lLvIDdi 99 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--PEVLEG-LEQADLVCLDDV 99 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--HHHHhh-cccCCEEEEeCh
Confidence 334444444332 33456699999999999999999887 4678889987754321 122221 223346778888
Q ss_pred ccccch
Q psy2654 1493 NRISVE 1498 (1949)
Q Consensus 1493 ~~l~~~ 1498 (1949)
+.++..
T Consensus 100 ~~l~~~ 105 (226)
T TIGR03420 100 EAIAGQ 105 (226)
T ss_pred hhhcCC
Confidence 888764
No 111
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.40 E-value=0.00087 Score=82.96 Aligned_cols=149 Identities=14% Similarity=0.200 Sum_probs=80.7
Q ss_pred HHHHHhcCc--EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccc------cCCCC-Ccc-----
Q psy2654 1757 LVELFAVRH--SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGII------NPSTR-EWK----- 1822 (1949)
Q Consensus 1757 l~~~l~~~~--~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~------~~~~~-~w~----- 1822 (1949)
|.+.+..+. +++++||||+|||++++.+++.+........+..+|.. ++++.. ++... .+.
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA-----DFFDQGKKYLVEDPRFAHFLGTDKRI 101 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh-----hhhhcchhhhhcCcchhhhhhhhhhh
Confidence 333444444 79999999999999999999887422111122223321 111110 00000 000
Q ss_pred ----cChHHHHHHHHhhcC--CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCC
Q psy2654 1823 ----DGLFSCLIREQAQST--GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTA 1894 (1949)
Q Consensus 1823 ----dG~l~~~~r~~~~~~--~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~a 1894 (1949)
...+..+++...... ....+-||+|.. +++...+.|..++++ .+++.++||-+++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------------~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 102 RSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------------YSRTCRFIIATRQPSKL 168 (337)
T ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------------ccCCCeEEEEeCChhhC
Confidence 012222222221111 133467899964 344455666666653 13457788888777778
Q ss_pred ChhhhccceEEEecCCCC-CchhhHHhhhc
Q psy2654 1895 TPATVSRAGILYINPQDL-GWNPYVLSWTD 1923 (1949)
Q Consensus 1895 sPa~vsr~~~v~~~~~~~-~w~~~~~~w~~ 1923 (1949)
-|+..|||..+.+.+-.- ....++..++.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 888999999998876442 23444444433
No 112
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.00095 Score=74.55 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=60.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHH
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
++++||||.||||++.-+|+-+|..+.+-...---...+|..++.+ .+-|..+.+||++++++.+-+++-.-
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~-Le~~DVLFIDEIHrl~~~vEE~LYpa 126 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTN-LEEGDVLFIDEIHRLSPAVEEVLYPA 126 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhc-CCcCCeEEEehhhhcChhHHHHhhhh
Confidence 6799999999999999999999999988776665566778888777 67789999999999999888776433
No 113
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.39 E-value=0.00084 Score=81.62 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=75.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
.+++|+||||+|||++++.+|..+. ..+..+ .|..... -|.+...++.. ....++
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~-----~~~~~~----------~~~~~~~-----~~~l~~~l~~~-----~~~~vl 85 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG-----VNLKIT----------SGPALEK-----PGDLAAILTNL-----EEGDVL 85 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEe----------ccchhcC-----chhHHHHHHhc-----ccCCEE
Confidence 4599999999999999999998662 111111 1211111 12334444432 123689
Q ss_pred EEcC--CCCccchhhHHhhhcCCccee-ccCC---c--eeecCCCceEEEEeCCCCCCChhhhccceEE-EecCC
Q psy2654 1845 VMDG--DIDPMWIESLNTVMDDNKVLT-LASN---E--RIALTPSMRLLFEISNLRTATPATVSRAGIL-YINPQ 1910 (1949)
Q Consensus 1845 v~Dg--~~d~~w~e~ln~~lddn~~l~-l~~g---e--~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v-~~~~~ 1910 (1949)
++|. .+++...|.|.+++++.+... +.+| + ++.+|+ +.++..|+....++|+..|||+++ .+++-
T Consensus 86 ~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~li~~t~~~~~l~~~l~sR~~~~~~l~~l 159 (305)
T TIGR00635 86 FIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP-FTLVGATTRAGMLTSPLRDRFGIILRLEFY 159 (305)
T ss_pred EEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCC-eEEEEecCCccccCHHHHhhcceEEEeCCC
Confidence 9995 345666788888888777433 2222 1 234444 667777888888999999999875 46643
No 114
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00014 Score=83.62 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=73.1
Q ss_pred HHHHHHHhcC--cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1755 VQLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1755 ~~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
-.+|+.+.+. .||+|+||||+|||.|.++.|+.. ...+.++. ..||.-.|...+ ++++|+
T Consensus 174 PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvv-----gSElVqKYiGEG--------aRlVRe 235 (406)
T COG1222 174 PELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVV-----GSELVQKYIGEG--------ARLVRE 235 (406)
T ss_pred HHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEec-----cHHHHHHHhccc--------hHHHHH
Confidence 4578877776 689999999999999999999754 11222221 234444443344 788898
Q ss_pred HhhcCCCCCcEEEEcCCCCcc------------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCC
Q psy2654 1833 QAQSTGDGPKWMVMDGDIDPM------------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTA 1894 (1949)
Q Consensus 1833 ~~~~~~~~~~Wiv~Dg~~d~~------------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~a 1894 (1949)
...-.+.+..-|||=..+|+. -+|-||.+ +-.--..++++|+.|.-..-.
T Consensus 236 lF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql------------DGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 236 LFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL------------DGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc------------cCCCCCCCeEEEEecCCcccc
Confidence 876555444445553223222 23333332 122334689999999999999
Q ss_pred Chhhh
Q psy2654 1895 TPATV 1899 (1949)
Q Consensus 1895 sPa~v 1899 (1949)
-||.+
T Consensus 304 DPALL 308 (406)
T COG1222 304 DPALL 308 (406)
T ss_pred Chhhc
Confidence 99885
No 115
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00052 Score=89.81 Aligned_cols=132 Identities=11% Similarity=0.148 Sum_probs=75.7
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCcccccCCCccCcccc----cccccCCCCCcccCh--HHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPMYNDLEPKAVTNDEL----FGIINPSTREWKDGL--FSCLIRE 1832 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~~~~i~p~~~~~~el----~G~~~~~~~~w~dG~--l~~~~r~ 1832 (1949)
+..|..|++||+|+||||+++++|+.++-... .++.. + +.+....+. +-.++..+ ..|+ +-.++.+
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~-C-~sC~~i~~g~~~DviEidAas---~~kVDdIReLie~ 110 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV-C-SSCVEIAQGRFVDLIEVDAAS---RTKVDDTRELLDN 110 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC-c-hHHHHHhcCCCceEEEecccc---ccCHHHHHHHHHH
Confidence 34678899999999999999999998842111 11111 1 111111110 00112211 1221 1222222
Q ss_pred HhhcC-CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1833 QAQST-GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1833 ~~~~~-~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
....+ ....+-||+|.. +...-.+.|-..|++ .|+++++|+-+++...+.|..+|||-.+.|.+
T Consensus 111 v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------------PP~~vrFILaTTe~~kLl~TIlSRCq~f~fkp 177 (944)
T PRK14949 111 VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKS 177 (944)
T ss_pred HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------------cCCCeEEEEECCCchhchHHHHHhheEEeCCC
Confidence 22111 234578899953 344444444444443 36688999999999999999999999999886
Q ss_pred CC
Q psy2654 1910 QD 1911 (1949)
Q Consensus 1910 ~~ 1911 (1949)
-.
T Consensus 178 Ls 179 (944)
T PRK14949 178 LT 179 (944)
T ss_pred CC
Confidence 53
No 116
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.37 E-value=0.00032 Score=84.14 Aligned_cols=178 Identities=15% Similarity=0.078 Sum_probs=94.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEE----EEeCCCCCCHhhhhhhcccccccC--ccccccccc--cccchhhHHHH
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVY----VFNCSEQMDYRSCGNIYKGLAQTG--AWGCFDEFN--RISVEVLSVVA 1504 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~----~~n~~~~~~~~~l~~~~~g~~~~g--~w~~~de~~--~l~~~~ls~~~ 1504 (1949)
|+++.||+|||||++++.+++.+-..-+ -|||.+........ .+.|....| .-....... .+|.++-. .
T Consensus 40 ~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~te--d 116 (350)
T CHL00081 40 GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD-EVREAIQNGETIETEKIKIPMVDLPLGATE--D 116 (350)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch-hhhhhhcccccccceeccccceecCCCCch--h
Confidence 4568899999999999999999864221 23555543322111 122222111 111111211 22332111 0
Q ss_pred HHHHH--HHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEE
Q psy2654 1505 VQVKS--VLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKL 1582 (1949)
Q Consensus 1505 ~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 1582 (1949)
..+.. +..++..... . +..|.+. .-+|.-.++||+|++++.+.+.+...+ ..+...+.-.|.+...
T Consensus 117 ~l~G~iD~~~al~~g~~--~-~~~GlL~--~A~~GiL~lDEInrL~~~~Q~~LLeam-------~e~~~~ier~G~s~~~ 184 (350)
T CHL00081 117 RVCGTIDIEKALTEGVK--A-FEPGLLA--KANRGILYVDEVNLLDDHLVDILLDSA-------ASGWNTVEREGISIRH 184 (350)
T ss_pred hccCcccHHHHhhcCcc--c-ccCCeee--ecCCCEEEecChHhCCHHHHHHHHHHH-------HhCCeEEeeCCeeeec
Confidence 11111 1112222211 1 1112222 124556777999999998877644433 3333344445777778
Q ss_pred ecCeeEEEEeCCCCCCCCCChhhHhhcccc-cccccCC-HHHHHHHHH
Q psy2654 1583 VTTVGMFITMNPGYAGRAELPENLKALFRP-CAMVVPD-FALICEIML 1628 (1949)
Q Consensus 1583 ~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~-v~~~~pD-~~~i~e~~L 1628 (1949)
...|.+.+|+||.. .+||+.|..+|-- +.+..|+ ...-.+++-
T Consensus 185 p~rfiviaT~np~e---g~l~~~LldRf~l~i~l~~~~~~~~e~~il~ 229 (350)
T CHL00081 185 PARFVLVGSGNPEE---GELRPQLLDRFGMHAEIRTVKDPELRVKIVE 229 (350)
T ss_pred CCCEEEEeccCccc---CCCCHHHHHHhCceeecCCCCChHHHHHHHH
Confidence 88999999999962 2599999998863 4555554 344444443
No 117
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00081 Score=85.42 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----cccc-CCCccCcccccccccCCCCCcccC
Q psy2654 1754 VVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDL-EPKAVTNDELFGIINPSTREWKDG 1824 (1949)
Q Consensus 1754 ~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i-~p~~~~~~el~G~~~~~~~~w~dG 1824 (1949)
+...+..-...|+++++||+|+||||+.+++|++++-..+ .++ +..+ +-.+.+.-++-|. ++ .|
T Consensus 27 L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAA----s~---~~ 99 (702)
T PRK14960 27 LSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAA----SR---TK 99 (702)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccc----cc---CC
Confidence 3333333344689999999999999999999999842111 110 0001 1111222222221 11 12
Q ss_pred hHHHHHHHHhh----c-CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChh
Q psy2654 1825 LFSCLIREQAQ----S-TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPA 1897 (1949)
Q Consensus 1825 ~l~~~~r~~~~----~-~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa 1897 (1949)
..-+|+... . .....+-+|+|.. ++..-...|-..|++ .|+++++||-+.+.....|.
T Consensus 100 --VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-------------PP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 100 --VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-------------PPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred --HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------------CCCCcEEEEEECChHhhhHH
Confidence 122333221 1 1234578889963 344434444444443 35678999999999988888
Q ss_pred hhccceEEEecCCC
Q psy2654 1898 TVSRAGILYINPQD 1911 (1949)
Q Consensus 1898 ~vsr~~~v~~~~~~ 1911 (1949)
.+|||-.+.|.+-.
T Consensus 165 IlSRCq~feFkpLs 178 (702)
T PRK14960 165 VISRCLQFTLRPLA 178 (702)
T ss_pred HHHhhheeeccCCC
Confidence 89999999998644
No 118
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.37 E-value=0.00041 Score=91.74 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=84.1
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEE----EEeCCCCCCHh---hhhhhcccccc-cCccccccccccccchhhHHH
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVY----VFNCSEQMDYR---SCGNIYKGLAQ-TGAWGCFDEFNRISVEVLSVV 1503 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~----~~n~~~~~~~~---~l~~~~~g~~~-~g~w~~~de~~~l~~~~ls~~ 1503 (1949)
.|+++.||+|||||++++.|++.+...-+ .|+|.+..... ...++..+... ..-|+ .++.++...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv------~~p~~~t~~- 98 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFV------NLPLGATED- 98 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCee------eCCCCCcHH-
Confidence 35668899999999999999999942211 35676644211 11111111110 01111 122221110
Q ss_pred HHHHHH--HHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEE
Q psy2654 1504 AVQVKS--VLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIK 1581 (1949)
Q Consensus 1504 ~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 1581 (1949)
..+.. +..++..+... + ..|.+. .-+|.-.++||+|+++..+...+...++ .....+.-.|....
T Consensus 99 -~l~G~~d~~~~l~~g~~~--~-~~G~L~--~A~~GiL~lDEi~~l~~~~q~~Ll~~le-------~g~~~v~r~g~~~~ 165 (633)
T TIGR02442 99 -RVVGSLDIERALREGEKA--F-QPGLLA--EAHRGILYIDEVNLLDDHLVDVLLDAAA-------MGVNRVEREGLSVS 165 (633)
T ss_pred -HcCCcccHHHHhhcCCee--e-cCccee--ecCCCeEEeChhhhCCHHHHHHHHHHHh-------cCCEEEEECCceee
Confidence 00111 12222222111 1 011111 1234456679999999888766554432 23334445577778
Q ss_pred EecCeeEEEEeCCCCCCCCCChhhHhhccc
Q psy2654 1582 LVTTVGMFITMNPGYAGRAELPENLKALFR 1611 (1949)
Q Consensus 1582 ~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr 1611 (1949)
....|.+.+|+||.. ..||+.|..+|-
T Consensus 166 ~~~~~~lIat~np~e---g~l~~~L~dR~~ 192 (633)
T TIGR02442 166 HPARFVLIGTMNPEE---GDLRPQLLDRFG 192 (633)
T ss_pred ecCCeEEEEecCCCC---CCCCHHHHhhcc
Confidence 888999999999953 269999999994
No 119
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.36 E-value=0.00057 Score=89.21 Aligned_cols=142 Identities=17% Similarity=0.130 Sum_probs=77.7
Q ss_pred HHHHHHhccC-CCCCCCCCCChhHHHHHHHHHhcc--eEEEEeCCCCCCHhhhhhh-cccccccCccccccccccccchh
Q psy2654 1424 LSQSLHLNMG-GAPAGPAGTGKTETTKDLGKAIGI--MVYVFNCSEQMDYRSCGNI-YKGLAQTGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1424 l~~al~~~~~-~~l~G~~g~GKt~~v~~la~~lg~--~~~~~n~~~~~~~~~l~~~-~~g~~~~g~w~~~de~~~l~~~~ 1499 (1949)
++.|+.-..| ++|.|++|||||++++.|++.++. |++.++++...+ .-++.+ +......|.|..
T Consensus 8 ~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d-~L~G~idl~~~~~~g~~~~----------- 75 (589)
T TIGR02031 8 TLLAVDPSLGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTED-RLIGGIDVEESLAGGQRVT----------- 75 (589)
T ss_pred HHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchh-hcccchhhhhhhhcCcccC-----------
Confidence 4456666555 457899999999999999999876 578787632111 111110 000011121110
Q ss_pred hHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccce
Q psy2654 1500 LSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGEN 1579 (1949)
Q Consensus 1500 ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1579 (1949)
..|.+. .-+|.-.++||+|++++.+.+.+...++. +.-.+.=.|..
T Consensus 76 -------------------------~~G~L~--~A~~GvL~lDEi~rl~~~~q~~Ll~al~~-------g~v~i~r~G~~ 121 (589)
T TIGR02031 76 -------------------------QPGLLD--EAPRGVLYVDMANLLDDGLSNRLLQALDE-------GVVIVEREGIS 121 (589)
T ss_pred -------------------------CCCCee--eCCCCcEeccchhhCCHHHHHHHHHHHHc-------CCeEEEECCCc
Confidence 001111 11233344455555555555443333321 11112223666
Q ss_pred EEEecCeeEEEEeCCCCCCCCCChhhHhhcccc
Q psy2654 1580 IKLVTTVGMFITMNPGYAGRAELPENLKALFRP 1612 (1949)
Q Consensus 1580 i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~ 1612 (1949)
.....+|++++|+||.. +...||+.|..+|--
T Consensus 122 ~~~p~~f~lIAt~np~e-~~g~L~~~LldRf~l 153 (589)
T TIGR02031 122 VVHPAKFALIATYDPAE-GGGGLPDHLLDRLAL 153 (589)
T ss_pred eeecCceEEEEecCCcc-ccCCCCHHHHHhccC
Confidence 66777999999999963 223899999988865
No 120
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.00082 Score=84.36 Aligned_cols=144 Identities=11% Similarity=0.216 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCC---Cc-----ccc-cCCCccCcccccccccCCCCC
Q psy2654 1750 FILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK---PM-----YND-LEPKAVTNDELFGIINPSTRE 1820 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~---~~-----~~~-i~p~~~~~~el~G~~~~~~~~ 1820 (1949)
.+..+.+.+..=...|+.|+.||+|+||||+.+++|++++-..+. ++ +.. .+-.+.+.-|+ |+.++
T Consensus 21 vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei----daas~- 95 (491)
T PRK14964 21 LVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI----DAASN- 95 (491)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE----ecccC-
Confidence 333333344333445899999999999999999999987422111 10 011 11122222222 22211
Q ss_pred cccCh--HHHHHHHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChh
Q psy2654 1821 WKDGL--FSCLIREQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPA 1897 (1949)
Q Consensus 1821 w~dG~--l~~~~r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa 1897 (1949)
-|+ +-.++..+...+ ....+.+|+|.. +..--+..|.+|.- | | ..|+++.+||.+++...+.|.
T Consensus 96 --~~vddIR~Iie~~~~~P~~~~~KVvIIDEa-h~Ls~~A~NaLLK~-----L---E--ePp~~v~fIlatte~~Kl~~t 162 (491)
T PRK14964 96 --TSVDDIKVILENSCYLPISSKFKVYIIDEV-HMLSNSAFNALLKT-----L---E--EPAPHVKFILATTEVKKIPVT 162 (491)
T ss_pred --CCHHHHHHHHHHHHhccccCCceEEEEeCh-HhCCHHHHHHHHHH-----H---h--CCCCCeEEEEEeCChHHHHHH
Confidence 121 112222222111 235689999973 22222444544421 0 1 146789999999999999999
Q ss_pred hhccceEEEecCCC
Q psy2654 1898 TVSRAGILYINPQD 1911 (1949)
Q Consensus 1898 ~vsr~~~v~~~~~~ 1911 (1949)
..|||-.+.|.+-.
T Consensus 163 I~SRc~~~~f~~l~ 176 (491)
T PRK14964 163 IISRCQRFDLQKIP 176 (491)
T ss_pred HHHhheeeeccccc
Confidence 99999999987544
No 121
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.36 E-value=0.0013 Score=88.31 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=69.0
Q ss_pred ccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhccc----c-----
Q psy2654 1413 ITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKG----L----- 1480 (1949)
Q Consensus 1413 ~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~g----~----- 1480 (1949)
..|.+.++...+..+.....++++.|++||||+.+++++-+... .|++.+||..-.+ ..+..-+.| .
T Consensus 330 ~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~-~~~~~elfg~~~~~~~~~~ 408 (638)
T PRK11388 330 DSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD-EALAEEFLGSDRTDSENGR 408 (638)
T ss_pred CCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-HHHHHHhcCCCCcCccCCC
Confidence 36788999999999999999999999999999999999988754 6999999987544 222221212 1
Q ss_pred -----cccCccccccccccccchhhHHHHHH
Q psy2654 1481 -----AQTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1481 -----~~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
...|.-+++||++.+|.++...+...
T Consensus 409 ~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~ 439 (638)
T PRK11388 409 LSKFELAHGGTLFLEKVEYLSPELQSALLQV 439 (638)
T ss_pred CCceeECCCCEEEEcChhhCCHHHHHHHHHH
Confidence 12355577888888887777665443
No 122
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0008 Score=83.34 Aligned_cols=137 Identities=17% Similarity=0.291 Sum_probs=77.1
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCcc-----cccCCCccCcccccccccCCCCCcccChHHHHHHHH-
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPMY-----NDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQ- 1833 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~~-----~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~- 1833 (1949)
..|+++++||+|+||||+++++|++++-... .++. ..++... ..+ +..+++.+ ..|+ .-+|+.
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~--~~d-viEIdaas---~~gV--d~IReL~ 110 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGI--SSD-VLEIDAAS---NRGI--ENIRELR 110 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccC--Ccc-ceeechhh---cccH--HHHHHHH
Confidence 4567999999999999999999998843211 1110 0011110 001 12233321 1221 122322
Q ss_pred ---hhcC-CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEe
Q psy2654 1834 ---AQST-GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYI 1907 (1949)
Q Consensus 1834 ---~~~~-~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~ 1907 (1949)
...+ ....+-+|+|.. ++. +..|.+|.- | | ..|.++.+|+.|++...+.|+.+|||-.++|
T Consensus 111 e~l~~~p~~g~~KV~IIDEah~Ls~---~A~NALLKt-----L---E--EPp~~viFILaTte~~kI~~TI~SRCq~~~f 177 (484)
T PRK14956 111 DNVKFAPMGGKYKVYIIDEVHMLTD---QSFNALLKT-----L---E--EPPAHIVFILATTEFHKIPETILSRCQDFIF 177 (484)
T ss_pred HHHHhhhhcCCCEEEEEechhhcCH---HHHHHHHHH-----h---h--cCCCceEEEeecCChhhccHHHHhhhheeee
Confidence 1111 234577888853 233 344444311 1 1 1356888999999999999999999999998
Q ss_pred cCCCCCchhhHHhhhc
Q psy2654 1908 NPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1908 ~~~~~~w~~~~~~w~~ 1923 (1949)
.+-.. .-+..|+.
T Consensus 178 ~~ls~---~~i~~~L~ 190 (484)
T PRK14956 178 KKVPL---SVLQDYSE 190 (484)
T ss_pred cCCCH---HHHHHHHH
Confidence 86542 33444543
No 123
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.00065 Score=87.21 Aligned_cols=137 Identities=16% Similarity=0.240 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCC---Cc-----ccccCCC-ccCcccccccccCCCCCcccC
Q psy2654 1754 VVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK---PM-----YNDLEPK-AVTNDELFGIINPSTREWKDG 1824 (1949)
Q Consensus 1754 ~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~---~~-----~~~i~p~-~~~~~el~G~~~~~~~~w~dG 1824 (1949)
+...+..=...|++|++||+|+||||+.++||+.++-.... .+ +..+... ..+.-+ ++.. ...|
T Consensus 28 L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE----idaA---s~~g 100 (709)
T PRK08691 28 LQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE----IDAA---SNTG 100 (709)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE----Eecc---ccCC
Confidence 33333333445899999999999999999999987422110 00 0111111 111111 1211 2233
Q ss_pred hHHHHHHHHhh----c-CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1825 LFSCLIREQAQ----S-TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1825 ~l~~~~r~~~~----~-~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
+ ..+|+... . .....+.||+|.. |..--+..|.+|.- |- ..|+++++||-+.+...+.|..+
T Consensus 101 V--d~IRelle~a~~~P~~gk~KVIIIDEa-d~Ls~~A~NALLKt-----LE-----EPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 101 I--DNIREVLENAQYAPTAGKYKVYIIDEV-HMLSKSAFNAMLKT-----LE-----EPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred H--HHHHHHHHHHHhhhhhCCcEEEEEECc-cccCHHHHHHHHHH-----HH-----hCCCCcEEEEEeCCccccchHHH
Confidence 2 23333321 1 1234589999973 22112334444310 00 14578899999999999999999
Q ss_pred ccceEEEecCC
Q psy2654 1900 SRAGILYINPQ 1910 (1949)
Q Consensus 1900 sr~~~v~~~~~ 1910 (1949)
|||-.+.|.+-
T Consensus 168 SRC~~f~f~~L 178 (709)
T PRK08691 168 SRCLQFVLRNM 178 (709)
T ss_pred HHHhhhhcCCC
Confidence 99988776543
No 124
>KOG0727|consensus
Probab=97.35 E-value=0.0003 Score=75.85 Aligned_cols=114 Identities=19% Similarity=0.339 Sum_probs=66.6
Q ss_pred HHHHHHHhcC--cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1755 VQLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1755 ~~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
-+||..+... +||+++||||||||.+.++.|... ...+.+++-.. -.+.++| . | .+++|+
T Consensus 178 ~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~firvvgse-fvqkylg----e------g--prmvrd 239 (408)
T KOG0727|consen 178 ADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAAFIRVVGSE-FVQKYLG----E------G--PRMVRD 239 (408)
T ss_pred HHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chheeeeccHH-HHHHHhc----c------C--cHHHHH
Confidence 4678887775 799999999999999999998744 11222232111 1123334 2 2 566676
Q ss_pred HhhcCCCCC-cEEEEcCCCCcc------------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCC
Q psy2654 1833 QAQSTGDGP-KWMVMDGDIDPM------------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRT 1893 (1949)
Q Consensus 1833 ~~~~~~~~~-~Wiv~Dg~~d~~------------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~ 1893 (1949)
...-.+.+. ..|.+|. +|+. .+|-||..= -.--.-|+++|+.|.--..
T Consensus 240 vfrlakenapsiifide-idaiatkrfdaqtgadrevqril~ellnqmd------------gfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 240 VFRLAKENAPSIIFIDE-IDAIATKRFDAQTGADREVQRILIELLNQMD------------GFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHHHhccCCcEEEeeh-hhhHhhhhccccccccHHHHHHHHHHHHhcc------------CcCcccceEEEEecCcccc
Confidence 654444333 3444442 2221 455555431 1233457788888877777
Q ss_pred CChhhh
Q psy2654 1894 ATPATV 1899 (1949)
Q Consensus 1894 asPa~v 1899 (1949)
.-||.+
T Consensus 307 ldpall 312 (408)
T KOG0727|consen 307 LDPALL 312 (408)
T ss_pred cCHhhc
Confidence 777765
No 125
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.35 E-value=0.00032 Score=84.40 Aligned_cols=83 Identities=19% Similarity=0.105 Sum_probs=55.8
Q ss_pred cCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccc-c
Q psy2654 1535 TGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRP-C 1613 (1949)
Q Consensus 1535 ~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~-v 1613 (1949)
+|...++||+|++++.+.+.+...++. ....+.-.|........|.+.+|+||.. .+||+.|..+|-- +
T Consensus 131 ~~GvL~lDEi~~L~~~~Q~~Ll~~l~~-------g~~~v~r~G~~~~~~~r~iviat~np~e---g~l~~~LldRf~l~i 200 (337)
T TIGR02030 131 NRGILYIDEVNLLEDHLVDVLLDVAAS-------GWNVVEREGISIRHPARFVLVGSGNPEE---GELRPQLLDRFGLHA 200 (337)
T ss_pred cCCEEEecChHhCCHHHHHHHHHHHHh-------CCeEEEECCEEEEcCCCEEEEecccccc---CCCCHHHHhhcceEE
Confidence 356678899999998877665554422 2223444577777788999999999962 3599999999974 3
Q ss_pred ccccCCH-HHHHHHH
Q psy2654 1614 AMVVPDF-ALICEIM 1627 (1949)
Q Consensus 1614 ~~~~pD~-~~i~e~~ 1627 (1949)
.+..|+. ..-.+++
T Consensus 201 ~l~~p~~~eer~eIL 215 (337)
T TIGR02030 201 EIRTVRDVELRVEIV 215 (337)
T ss_pred ECCCCCCHHHHHHHH
Confidence 4545533 3333443
No 126
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.35 E-value=9.2e-05 Score=77.95 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=68.1
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcc---eEEEEeCCCCCCHhhhhhhcccccccCcccccc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGI---MVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFD 1490 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~---~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~d 1490 (1949)
+|.+.+....+..+-....++++.|++||||+.+++.+...-++ +++.++|.. ++.+.+.+ + .|.+++++
T Consensus 4 S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-~~~~~l~~----a--~~gtL~l~ 76 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-LPAELLEQ----A--KGGTLYLK 76 (138)
T ss_dssp CHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-TCHHHHHH----C--TTSEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-CcHHHHHH----c--CCCEEEEC
Confidence 46678888899999999999999999999999999999998886 566667765 33333333 2 78889999
Q ss_pred ccccccchhhHHHHHHH
Q psy2654 1491 EFNRISVEVLSVVAVQV 1507 (1949)
Q Consensus 1491 e~~~l~~~~ls~~~~~~ 1507 (1949)
|++.++.+....+.+.+
T Consensus 77 ~i~~L~~~~Q~~L~~~l 93 (138)
T PF14532_consen 77 NIDRLSPEAQRRLLDLL 93 (138)
T ss_dssp CGCCS-HHHHHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHH
Confidence 99999999999887665
No 127
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.34 E-value=0.00032 Score=84.16 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=90.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcc---CC----------C--------------cccccCCCccCcccccccccCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAK---KK----------P--------------MYNDLEPKAVTNDELFGIINPS 1817 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~---~~----------~--------------~~~~i~p~~~~~~el~G~~~~~ 1817 (1949)
++|+|.|+||+||||+.+.++..+.... +. . .-.+--|..+|.+.|+|++|-.
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 7899999999999999999999873110 00 0 0001135566778899987743
Q ss_pred C----C--CcccChHHHHHHHHhhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC
Q psy2654 1818 T----R--EWKDGLFSCLIREQAQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS 1889 (1949)
Q Consensus 1818 ~----~--~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~ 1889 (1949)
. + .++.|++..+= .--+++|.. +++.....|-.+|+++....-..|.....|..+.++ .+.
T Consensus 110 ~~l~~g~~~~~~G~l~~A~----------~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfivi-At~ 178 (334)
T PRK13407 110 RALTRGEKAFEPGLLARAN----------RGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLV-GSG 178 (334)
T ss_pred hhhhcCCeeecCCceEEcC----------CCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEE-ecC
Confidence 2 2 36677664221 134888954 578888888889988876556678888888877444 456
Q ss_pred CC-C-CCChhhhccceEE-Eec
Q psy2654 1890 NL-R-TATPATVSRAGIL-YIN 1908 (1949)
Q Consensus 1890 ~l-~-~asPa~vsr~~~v-~~~ 1908 (1949)
|. . .+.|+.+.|+++. .++
T Consensus 179 NP~e~~l~~aLldRF~~~v~v~ 200 (334)
T PRK13407 179 NPEEGELRPQLLDRFGLSVEVR 200 (334)
T ss_pred CcccCCCCHHHHhhcceEEEcC
Confidence 54 3 3788999999864 344
No 128
>KOG0734|consensus
Probab=97.33 E-value=0.0003 Score=84.00 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=51.0
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhcccc-cccCccccccccccccch
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGL-AQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~-~~~g~w~~~de~~~l~~~ 1498 (1949)
....|++|+||||||||-+++++|.--|.|++....|+ +.....+...|..+ ++.-|.+.+||++.+...
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~k 411 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGK 411 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhccc
Confidence 45678999999999999999999999999999877766 22233344445444 345667777777765443
No 129
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0011 Score=81.70 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=78.1
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccC--CCc-----ccccCCCccCcccccccccCCCCC-cccChHHHHHHHHh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK--KPM-----YNDLEPKAVTNDELFGIINPSTRE-WKDGLFSCLIREQA 1834 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~--~~~-----~~~i~p~~~~~~el~G~~~~~~~~-w~dG~l~~~~r~~~ 1834 (1949)
..|++++.||+|+|||++.+.+|+++.-... .++ ++.+... +..+++ .+.|+... ..| -+-.+++...
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~--~hpD~~-~i~~~~~~i~i~-~iR~l~~~~~ 110 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG--THPDVR-VVAPEGLSIGVD-EVRELVTIAA 110 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC--CCCCEE-EeccccccCCHH-HHHHHHHHHH
Confidence 4688999999999999999999998732110 000 0000000 001110 01111100 011 1223333332
Q ss_pred hcC-CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1835 QST-GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1835 ~~~-~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
..+ ....+.+++|+. +++ +.-|++|.- | | ..|++..+|+-+++...+.|+.+|||-.++|.+-.
T Consensus 111 ~~p~~~~~kViiIDead~m~~---~aanaLLk~-----L---E--ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~ 177 (394)
T PRK07940 111 RRPSTGRWRIVVIEDADRLTE---RAANALLKA-----V---E--EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPS 177 (394)
T ss_pred hCcccCCcEEEEEechhhcCH---HHHHHHHHH-----h---h--cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCC
Confidence 222 234577888852 232 233444421 1 1 13567779999999999999999999999998654
Q ss_pred CCchhhHHhhhc
Q psy2654 1912 LGWNPYVLSWTD 1923 (1949)
Q Consensus 1912 ~~w~~~~~~w~~ 1923 (1949)
. ..+..|+.
T Consensus 178 ~---~~i~~~L~ 186 (394)
T PRK07940 178 V---EAVAEVLV 186 (394)
T ss_pred H---HHHHHHHH
Confidence 2 45666775
No 130
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.32 E-value=0.001 Score=81.39 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=75.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
.+++++||||+|||++++.+|+.+.. .+..++ |.... ..|.+..+++.. .....+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~-----~~~~~~----------~~~~~-----~~~~l~~~l~~l-----~~~~vl 106 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGV-----NIRITS----------GPALE-----KPGDLAAILTNL-----EEGDVL 106 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCC-----CeEEEe----------ccccc-----ChHHHHHHHHhc-----ccCCEE
Confidence 57999999999999999999987721 111111 11000 112344444432 123678
Q ss_pred EEcC--CCCccchhhHHhhhcCCccee-ccCCc-----eeecCCCceEEEEeCCCCCCChhhhccceE-EEecC
Q psy2654 1845 VMDG--DIDPMWIESLNTVMDDNKVLT-LASNE-----RIALTPSMRLLFEISNLRTATPATVSRAGI-LYINP 1909 (1949)
Q Consensus 1845 v~Dg--~~d~~w~e~ln~~lddn~~l~-l~~ge-----~i~~~~~~~~ifE~~~l~~asPa~vsr~~~-v~~~~ 1909 (1949)
++|. .+....-|.+.+++++.+... +.+|. ++.+|+ +.++..|+....++|+..|||++ +.+++
T Consensus 107 ~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~-~~li~at~~~~~l~~~L~sRf~~~~~l~~ 179 (328)
T PRK00080 107 FIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP-FTLIGATTRAGLLTSPLRDRFGIVQRLEF 179 (328)
T ss_pred EEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC-ceEEeecCCcccCCHHHHHhcCeeeecCC
Confidence 8884 345556677888888766432 33322 233444 77899999999999999999986 45554
No 131
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.31 E-value=0.0007 Score=85.40 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhccccc---c--cCccccccccccccchh
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLA---Q--TGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~---~--~g~w~~~de~~~l~~~~ 1499 (1949)
..+++||+|||||++++.+|+.++.+++.++++.. ....+..++..+. . .+..+++||+++++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~ 108 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ 108 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH
Confidence 35588999999999999999999999999998753 2333333333221 1 34456667766665443
No 132
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.31 E-value=0.00048 Score=80.13 Aligned_cols=162 Identities=15% Similarity=0.354 Sum_probs=97.3
Q ss_pred hcCCCcChHHHHHHHHHHHHHhcCcE-EEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCC
Q psy2654 1741 DMKLQPEDSFILKVVQLVELFAVRHS-VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTR 1819 (1949)
Q Consensus 1741 ~~~l~~~~~~~~k~~~l~~~l~~~~~-vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~ 1819 (1949)
.++++..++.+..+..+.+.+...+| .||+|.+||||+|+.+..|-.. . ..+ ..|. ++ .=|| -.
T Consensus 7 ~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~-~----~~~--~~i~-~~--~~y~-----~~ 71 (268)
T PF12780_consen 7 KMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFIC-G----YEV--FQIE-IT--KGYS-----IK 71 (268)
T ss_dssp -------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHT-T----EEE--E-TT-TS--TTTH-----HH
T ss_pred ccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHh-c----cce--EEEE-ee--CCcC-----HH
Confidence 46788888999999999999987654 7999999999999998655433 1 111 1111 11 1122 12
Q ss_pred CcccChHHHHHHHHhhcCCCCCcEEEE-cCC-CCccchhhHHhhhcCCcceeccCCcee---------------------
Q psy2654 1820 EWKDGLFSCLIREQAQSTGDGPKWMVM-DGD-IDPMWIESLNTVMDDNKVLTLASNERI--------------------- 1876 (1949)
Q Consensus 1820 ~w~dG~l~~~~r~~~~~~~~~~~Wiv~-Dg~-~d~~w~e~ln~~lddn~~l~l~~ge~i--------------------- 1876 (1949)
+|++-+ -+++++++.. ..+.-+++ |.. .+..++|.+|++|..+.+..|-++|.+
T Consensus 72 ~f~~dL-k~~~~~ag~~--~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~ 148 (268)
T PF12780_consen 72 DFKEDL-KKALQKAGIK--GKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRE 148 (268)
T ss_dssp HHHHHH-HHHHHHHHCS---S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHH
T ss_pred HHHHHH-HHHHHHHhcc--CCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchH
Confidence 465544 3444444322 22233444 443 478899999999976655444433321
Q ss_pred --------ecCCCceEEEEeCCCCC-------CChhhhccceEEEecCCCCCchhh-----HHhhhcc
Q psy2654 1877 --------ALTPSMRLLFEISNLRT-------ATPATVSRAGILYINPQDLGWNPY-----VLSWTDT 1924 (1949)
Q Consensus 1877 --------~~~~~~~~ifE~~~l~~-------asPa~vsr~~~v~~~~~~~~w~~~-----~~~w~~~ 1924 (1949)
++..|+|+++-.+.... ..||.+++|.|.|+++ |..- ...+++.
T Consensus 149 ~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~----W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 149 SLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDP----WPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES------HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCc----CCHHHHHHHHHHHHHh
Confidence 46689999998877554 5799999999999995 6643 3556554
No 133
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.00074 Score=90.43 Aligned_cols=146 Identities=14% Similarity=0.210 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----ccccC---CCccCcccccccccCCCC
Q psy2654 1751 ILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDLE---PKAVTNDELFGIINPSTR 1819 (1949)
Q Consensus 1751 ~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i~---p~~~~~~el~G~~~~~~~ 1819 (1949)
+..+...+..=...|..|++||+|+||||+.++||+.++=..+ ..+ ++.++ |.+.+.-++-| .+.
T Consensus 24 ~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eida----as~ 99 (824)
T PRK07764 24 TEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDA----ASH 99 (824)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecc----ccc
Confidence 3334444444456789999999999999999999998841111 011 11121 22222222211 110
Q ss_pred CcccChHHHHHHHHh----hc-CCCCCcEEEEcCC--CCccchhhHHhhh---cCCcceeccCCceeecCCCceEEEEeC
Q psy2654 1820 EWKDGLFSCLIREQA----QS-TGDGPKWMVMDGD--IDPMWIESLNTVM---DDNKVLTLASNERIALTPSMRLLFEIS 1889 (1949)
Q Consensus 1820 ~w~dG~l~~~~r~~~----~~-~~~~~~Wiv~Dg~--~d~~w~e~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~ 1889 (1949)
-| ..-+|+.. .. .....+-+|+|.. +.. +..|.|| ++ .|+++.|||-++
T Consensus 100 ---~~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---~a~NaLLK~LEE-------------pP~~~~fIl~tt 158 (824)
T PRK07764 100 ---GG--VDDARELRERAFFAPAESRYKIFIIDEAHMVTP---QGFNALLKIVEE-------------PPEHLKFIFATT 158 (824)
T ss_pred ---CC--HHHHHHHHHHHHhchhcCCceEEEEechhhcCH---HHHHHHHHHHhC-------------CCCCeEEEEEeC
Confidence 01 22233321 11 2245578888852 233 4455554 32 567889999999
Q ss_pred CCCCCChhhhccceEEEecCCCCCchhhHHhhhcc
Q psy2654 1890 NLRTATPATVSRAGILYINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1890 ~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~~ 1924 (1949)
+...+-|...|||-++.|..-.- .-+..||..
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~---~~l~~~L~~ 190 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPP---EVMRGYLER 190 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCH---HHHHHHHHH
Confidence 99999999999999999985421 344455543
No 134
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.30 E-value=0.012 Score=74.48 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=35.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHh-hhhhhcc
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYR-SCGNIYK 1478 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~-~l~~~~~ 1478 (1949)
.+++||+|||||++++.+++.+ +..++.+||....+.. .+..++.
T Consensus 58 ~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 5689999999999999999988 5778999998866543 3344433
No 135
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.30 E-value=0.00061 Score=80.02 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=63.8
Q ss_pred ccchHHHHHHHHH------HHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC------CCHhhhhhhcccccc
Q psy2654 1415 PLTDRCYITLSQS------LHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ------MDYRSCGNIYKGLAQ 1482 (1949)
Q Consensus 1415 ~~t~r~~~~l~~a------l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~------~~~~~l~~~~~g~~~ 1482 (1949)
..++|....++.. ++...+.+|+||+|||||.+++.+|+.+|.++++++..+- -..+.+...|.-|..
T Consensus 126 ~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 126 AFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAAD 205 (413)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHH
Confidence 3455666565554 3445567799999999999999999999999999998773 345667777776643
Q ss_pred ------cCccccccccccccch
Q psy2654 1483 ------TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1483 ------~g~w~~~de~~~l~~~ 1498 (1949)
.-|.+.+||++.+...
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~ 227 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGR 227 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCC
Confidence 4688899999976553
No 136
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.29 E-value=0.00082 Score=73.62 Aligned_cols=151 Identities=20% Similarity=0.143 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhh
Q psy2654 1421 YITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVL 1500 (1949)
Q Consensus 1421 ~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~l 1500 (1949)
...+.-|..-+.+.++.||+|||||.+++.++..|-..-.. ..-+.....++.+ ......- .-.-=-+.++...
T Consensus 12 KrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~-e~le~~~i~s~~~----~~~~~~~-~~~~Pfr~phhs~ 85 (206)
T PF01078_consen 12 KRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEE-EALEVSKIYSVAG----LGPDEGL-IRQRPFRAPHHSA 85 (206)
T ss_dssp HHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS--CCEE-CCESS--S-TT-------S---EE-EE---EEEE-TT-
T ss_pred HHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchH-HHhhhcccccccc----CCCCCce-ecCCCcccCCCCc
Confidence 34444455556788899999999999999999988765432 1111111111111 0000000 0000001122223
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceE
Q psy2654 1501 SVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENI 1580 (1949)
Q Consensus 1501 s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i 1580 (1949)
+..+ +..+. .....|+- +.-++.-..+||+|..+..+++++.+-+++ +.-.+.=.|..+
T Consensus 86 s~~~---------liGgg-~~~~PGei----slAh~GVLflDE~~ef~~~vld~Lr~ple~-------g~v~i~R~~~~~ 144 (206)
T PF01078_consen 86 SEAA---------LIGGG-RPPRPGEI----SLAHRGVLFLDELNEFDRSVLDALRQPLED-------GEVTISRAGGSV 144 (206)
T ss_dssp -HHH---------HHEEG-GGEEE-CG----GGGTTSEEEECETTTS-HHHHHHHHHHHHH-------SBEEEEETTEEE
T ss_pred CHHH---------HhCCC-cCCCcCHH----HHhcCCEEEechhhhcCHHHHHHHHHHHHC-------CeEEEEECCceE
Confidence 3211 10000 00001111 112333344499999998888765555433 333333346667
Q ss_pred EEecCeeEEEEeCC---CCCC
Q psy2654 1581 KLVTTVGMFITMNP---GYAG 1598 (1949)
Q Consensus 1581 ~~~~~~~~f~tmnp---~~~g 1598 (1949)
...-+|-+.+|||| ||.|
T Consensus 145 ~~Pa~f~lv~a~NPcpCG~~~ 165 (206)
T PF01078_consen 145 TYPARFLLVAAMNPCPCGYYG 165 (206)
T ss_dssp EEB--EEEEEEE-S-------
T ss_pred EEecccEEEEEeccccccccc
Confidence 77779999999999 6665
No 137
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00058 Score=86.49 Aligned_cols=147 Identities=12% Similarity=0.222 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc----CC----Cc-----ccccCCCccCcccccccc
Q psy2654 1748 DSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK----KK----PM-----YNDLEPKAVTNDELFGII 1814 (1949)
Q Consensus 1748 ~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~----~~----~~-----~~~i~p~~~~~~el~G~~ 1814 (1949)
+..+..+.+.+..-+..|..|+.||+|+||||+.+.|++.++-.. .. .+ +..|.-. +..+++ .+
T Consensus 22 e~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG--~hpDvi-EI 98 (700)
T PRK12323 22 EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG--RFVDYI-EM 98 (700)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC--CCCcce-Ee
Confidence 344444455555555678999999999999999999999984210 00 00 0001000 001121 12
Q ss_pred cCCCCCcccCh--HHHHHHHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC
Q psy2654 1815 NPSTREWKDGL--FSCLIREQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL 1891 (1949)
Q Consensus 1815 ~~~~~~w~dG~--l~~~~r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l 1891 (1949)
|..+ .-|+ +-.++.+..... ....+-+|+|.. |..=-+..|.+|. .| - ..|++++|||-|++.
T Consensus 99 dAas---~~gVDdIReLie~~~~~P~~gr~KViIIDEa-h~Ls~~AaNALLK---TL--E-----EPP~~v~FILaTtep 164 (700)
T PRK12323 99 DAAS---NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEV-HMLTNHAFNAMLK---TL--E-----EPPEHVKFILATTDP 164 (700)
T ss_pred cccc---cCCHHHHHHHHHHHHhchhcCCceEEEEECh-HhcCHHHHHHHHH---hh--c-----cCCCCceEEEEeCCh
Confidence 2211 1222 112222222211 234578888863 2222355666662 11 1 145688999999999
Q ss_pred CCCChhhhccceEEEecCCC
Q psy2654 1892 RTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1892 ~~asPa~vsr~~~v~~~~~~ 1911 (1949)
..+.|..+|||-.+.|..-.
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls 184 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMP 184 (700)
T ss_pred HhhhhHHHHHHHhcccCCCC
Confidence 99999999999999988654
No 138
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.28 E-value=0.0012 Score=84.53 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=66.3
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHH---hcceEEEEeCCCCCCHhhhhh--------hccccc-
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKA---IGIMVYVFNCSEQMDYRSCGN--------IYKGLA- 1481 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~---lg~~~~~~n~~~~~~~~~l~~--------~~~g~~- 1481 (1949)
+|.+.++...+..+-....++++.|++||||+.+++.+-.. -+.|++.+||..-.+ ..+.. .|.|+.
T Consensus 218 S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG~~~gaftga~~ 296 (526)
T TIGR02329 218 SAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFGYEEGAFTGARR 296 (526)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcCCcccccccccc
Confidence 46788888888888888999999999999999999998765 456999999986433 22222 222322
Q ss_pred ---------ccCccccccccccccchhhHHHHH
Q psy2654 1482 ---------QTGAWGCFDEFNRISVEVLSVVAV 1505 (1949)
Q Consensus 1482 ---------~~g~w~~~de~~~l~~~~ls~~~~ 1505 (1949)
..|.-+.+||++.+|.++...+..
T Consensus 297 ~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~ 329 (526)
T TIGR02329 297 GGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLR 329 (526)
T ss_pred cccccchhhcCCceEEecChHhCCHHHHHHHHH
Confidence 234457788888888777766543
No 139
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0022 Score=82.10 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1421 YITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1421 ~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
...+..++..+.-+ +++||+|||||++++.+|+.++.
T Consensus 25 ~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 25 VRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34566666554432 58899999999999999999964
No 140
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0016 Score=83.14 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....+..++..+..+ +++||+|||||++++.+|+.+..
T Consensus 22 v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 22 VKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455566667766655 78999999999999999999853
No 141
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0013 Score=83.52 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1421 YITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1421 ~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
...|..++..+.. .+++||+|+|||++++.+|+.++.
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4455666666543 368999999999999999999985
No 142
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0012 Score=83.35 Aligned_cols=130 Identities=16% Similarity=0.259 Sum_probs=69.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC---CCcccccCCCccCcccc--cccccCCCCCcccChHHHHHHHH---hh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPMYNDLEPKAVTNDEL--FGIINPSTREWKDGLFSCLIREQ---AQ 1835 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~~~~i~p~~~~~~el--~G~~~~~~~~w~dG~l~~~~r~~---~~ 1835 (1949)
.|+++++||||+||||+++++|+.+..... .++..+-+...+..... +-.+++.. ..|+ .-+|+. ..
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~---~~gi--d~iR~i~~~~~ 110 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS---NRGI--DEIRKIRDAVG 110 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc---cCCH--HHHHHHHHHHh
Confidence 467899999999999999999998742211 11111101111111110 11122211 1222 122321 11
Q ss_pred -cC-CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1836 -ST-GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1836 -~~-~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
.+ ....+-+++|.. +...-.+.|-..|++ .|+++.+++.+.+...+.|+..|||.++.+.+-.
T Consensus 111 ~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------------p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~ 177 (472)
T PRK14962 111 YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------------PPSHVVFVLATTNLEKVPPTIISRCQVIEFRNIS 177 (472)
T ss_pred hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------------CCCcEEEEEEeCChHhhhHHHhcCcEEEEECCcc
Confidence 11 134467888863 111112222222222 3456778888888889999999999999987643
No 143
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0011 Score=85.76 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1419 RCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
.....|..++..+.- .+++||+|+|||++++.||+.++..
T Consensus 23 ~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 23 HVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344466677776554 3588999999999999999998863
No 144
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.00088 Score=78.62 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=26.9
Q ss_pred HHHHHhcC--cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1757 LVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1757 l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|.+++... +..|+.||||+||||+.+++|...
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 45666654 579999999999999999999876
No 145
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0017 Score=80.45 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....+..++..+.. .+++||+|+|||++++.+|+.++.
T Consensus 24 ~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 24 IVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34456666666543 358999999999999999999873
No 146
>CHL00181 cbbX CbbX; Provisional
Probab=97.24 E-value=0.00017 Score=85.41 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=69.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCC--cccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP--MYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~--~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
.++++.||||||||++.+++|..+...+... .+.. ++..+|.|.|...+. .-...+++++ ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-----v~~~~l~~~~~g~~~----~~~~~~l~~a------~gg 124 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-----VTRDDLVGQYIGHTA----PKTKEVLKKA------MGG 124 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-----ecHHHHHHHHhccch----HHHHHHHHHc------cCC
Confidence 3489999999999999999999874432111 1222 223345554432220 0011222222 114
Q ss_pred EEEEcCC-----------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-----CCCCCChhhhccce-EE
Q psy2654 1843 WMVMDGD-----------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-----NLRTATPATVSRAG-IL 1905 (1949)
Q Consensus 1843 Wiv~Dg~-----------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-----~l~~asPa~vsr~~-~v 1905 (1949)
-+++|.. .....++.|..+|++.+ .++++|+.+. .+-...|+..|||. .|
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i 191 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHV 191 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceE
Confidence 5777842 23456677778887643 4566777653 22345699999998 56
Q ss_pred EecCCC
Q psy2654 1906 YINPQD 1911 (1949)
Q Consensus 1906 ~~~~~~ 1911 (1949)
+|.+-.
T Consensus 192 ~F~~~t 197 (287)
T CHL00181 192 DFPDYT 197 (287)
T ss_pred EcCCcC
Confidence 676544
No 147
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.24 E-value=0.00098 Score=77.08 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=50.5
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHH
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~ 1504 (1949)
...+.+++||+|||||++++++++.+ |.+++.++|.+.... + .....+..+++||++.++......+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--~-----~~~~~~~~liiDdi~~l~~~~~~~L~ 111 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--F-----DFDPEAELYAVDDVERLDDAQQIALF 111 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--H-----hhcccCCEEEEeChhhcCchHHHHHH
Confidence 34567799999999999999999875 789999999774322 1 22335678999999988776554443
No 148
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.23 E-value=0.00048 Score=91.14 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=50.9
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC------CCHhhhhhhccccc-ccCcccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ------MDYRSCGNIYKGLA-QTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~------~~~~~l~~~~~g~~-~~g~w~~~de~~~l~ 1496 (1949)
...|.+++||+|||||++++.+|..+|.|++.++|++- .....+...|.-+. ...+.+.+||++.+.
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~ 257 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVG 257 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhh
Confidence 34578899999999999999999999999999999762 23334444554443 346788889987764
No 149
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0023 Score=81.71 Aligned_cols=131 Identities=14% Similarity=0.214 Sum_probs=73.9
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----ccccCCCccCcccccccccCCCCCcccCh--HHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDLEPKAVTNDELFGIINPSTREWKDGL--FSCLIR 1831 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i~p~~~~~~el~G~~~~~~~~w~dG~--l~~~~r 1831 (1949)
...|+++++||+|+||||+.+.+|+.+.-..+ .++ +..+.... ..+++. ++..+ .-|+ +-.++.
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~--~~dlie-idaas---~~gvd~ir~ii~ 109 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNS--FIDLIE-IDAAS---RTGVEETKEILD 109 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCC--CCceEE-eeccc---ccCHHHHHHHHH
Confidence 34577999999999999999999998742111 111 00111100 011111 11111 0111 112222
Q ss_pred HHhhc-CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1832 EQAQS-TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1832 ~~~~~-~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
..... .....+-+|+|.. ++..-.+.|-..|++ .|+++.+||-|+|.....|...|||-++.|.
T Consensus 110 ~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------------pp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~ 176 (546)
T PRK14957 110 NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------------PPEYVKFILATTDYHKIPVTILSRCIQLHLK 176 (546)
T ss_pred HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------------CCCCceEEEEECChhhhhhhHHHheeeEEeC
Confidence 22211 1234578888863 233233333344443 3678899999999999988899999999998
Q ss_pred CCC
Q psy2654 1909 PQD 1911 (1949)
Q Consensus 1909 ~~~ 1911 (1949)
+-.
T Consensus 177 ~Ls 179 (546)
T PRK14957 177 HIS 179 (546)
T ss_pred CCC
Confidence 653
No 150
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.22 E-value=0.013 Score=73.33 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=35.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhc---------ceEEEEeCCCCCCH-hhhhhhcccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIG---------IMVYVFNCSEQMDY-RSCGNIYKGL 1480 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg---------~~~~~~n~~~~~~~-~~l~~~~~g~ 1480 (1949)
+.+++||+|||||++++.+++.+. ..++.+||....+. ..+.+++..+
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQL 99 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355889999999999999998775 46888999886553 3444444444
No 151
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.21 E-value=0.00037 Score=86.55 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRI 1495 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l 1495 (1949)
....|++++||+|||||++++++|..++.+++.+.+++-.+ ...+..+|.-+.. ..+.+.+||++.+
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l 288 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAI 288 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHH
Confidence 34567889999999999999999999999999998876322 2223334433322 3466788887755
No 152
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.21 E-value=0.00085 Score=80.76 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=87.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC----CC-------------------------------cccccCCCccCcc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK----KP-------------------------------MYNDLEPKAVTND 1808 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~----~~-------------------------------~~~~i~p~~~~~~ 1808 (1949)
..+|+|.|++|+||||++++++..+....+ .. .+.. -|..++.+
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-lP~~~t~d 103 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVD-LPLGATED 103 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCC-CCCCCccc
Confidence 467999999999999999999987732110 00 0011 35556667
Q ss_pred cccccccCC----CC--CcccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCC
Q psy2654 1809 ELFGIINPS----TR--EWKDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTP 1880 (1949)
Q Consensus 1809 el~G~~~~~----~~--~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~ 1880 (1949)
.|+|.+|.. ++ .++.|++.++ ....+++|. .+++.....|-.+|+++..-.-..|.....|.
T Consensus 104 ~l~G~~d~~~~l~~g~~~~~~GlL~~A----------~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~ 173 (337)
T TIGR02030 104 RVCGTLDIERALTEGVKAFEPGLLARA----------NRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPA 173 (337)
T ss_pred ceecchhHhhHhhcCCEEeecCcceec----------cCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCC
Confidence 899998632 22 2566765421 125688894 45777778888888887654556677777776
Q ss_pred CceEEEEeCCCC--CCChhhhccceEEE
Q psy2654 1881 SMRLLFEISNLR--TATPATVSRAGILY 1906 (1949)
Q Consensus 1881 ~~~~ifE~~~l~--~asPa~vsr~~~v~ 1906 (1949)
.+ ++.-++|+. ...|+...|+++..
T Consensus 174 r~-iviat~np~eg~l~~~LldRf~l~i 200 (337)
T TIGR02030 174 RF-VLVGSGNPEEGELRPQLLDRFGLHA 200 (337)
T ss_pred CE-EEEeccccccCCCCHHHHhhcceEE
Confidence 65 445556654 48899999999753
No 153
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.012 Score=75.99 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcc---CCCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1420 CYITLSQSLHLNM---GGAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1420 ~~~~l~~al~~~~---~~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
....|..++..+. +.+++||+|+|||++++.||+.++..
T Consensus 24 vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 24 VVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3445666666655 34689999999999999999998753
No 154
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.21 E-value=0.0015 Score=84.74 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=65.1
Q ss_pred ccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhccc----------
Q psy2654 1413 ITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKG---------- 1479 (1949)
Q Consensus 1413 ~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g---------- 1479 (1949)
.+|.+.++...+-.+-....++++.|++||||+.+++++-... +.|++.+||..-.+ ..+...+-|
T Consensus 209 ~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG~~~~~~~~~~ 287 (520)
T PRK10820 209 VSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFGHAPGAYPNAL 287 (520)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcCCCCCCcCCcc
Confidence 3567788888888888889999999999999999999975543 36899999987443 223222212
Q ss_pred -----cc--ccCccccccccccccchhhHHHHH
Q psy2654 1480 -----LA--QTGAWGCFDEFNRISVEVLSVVAV 1505 (1949)
Q Consensus 1480 -----~~--~~g~w~~~de~~~l~~~~ls~~~~ 1505 (1949)
.. ..|.-+++||++.+|+.+...+..
T Consensus 288 ~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~ 320 (520)
T PRK10820 288 EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 320 (520)
T ss_pred cCCCChhhhcCCCEEEEeChhhCCHHHHHHHHH
Confidence 11 224557888888888877765543
No 155
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0032 Score=79.88 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcc---CCCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNM---GGAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~---~~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....+..++..+. +.+++||+|||||++++.+|+.++.
T Consensus 29 vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 29 LVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445566666655 4568999999999999999999975
No 156
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.17 E-value=0.002 Score=86.89 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=65.5
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhccc--------c--
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKG--------L-- 1480 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g--------~-- 1480 (1949)
+|.+.+....+..+-....++++.||+|||||.+++.+.... |.|++.+||..-.+ ..+..-+-| +
T Consensus 382 S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~ 460 (686)
T PRK15429 382 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASA 460 (686)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCccccccccccc
Confidence 567788888888888888899999999999999999997754 57999999986432 222222111 1
Q ss_pred -------cccCccccccccccccchhhHHHHHH
Q psy2654 1481 -------AQTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1481 -------~~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
...|.-+++||++.++.++...+...
T Consensus 461 ~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~ 493 (686)
T PRK15429 461 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRV 493 (686)
T ss_pred chhhHHHhcCCCeEEEechhhCCHHHHHHHHHH
Confidence 12344577778877777776665443
No 157
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.17 E-value=0.002 Score=75.81 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=87.0
Q ss_pred cCCCcChHHHHHHH-HHHHH------HhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccc
Q psy2654 1742 MKLQPEDSFILKVV-QLVEL------FAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGII 1814 (1949)
Q Consensus 1742 ~~l~~~~~~~~k~~-~l~~~------l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~ 1814 (1949)
-+|...+.|..|+. ++..- ++...+++|+||||||||.+.+++|+.+ .+++-.++..+|++.|
T Consensus 119 g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 119 GGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELESEN 188 (413)
T ss_pred CccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhcCc
Confidence 46667777777754 22221 3455789999999999999999999987 2445667778898888
Q ss_pred cCCCCCcccChHHHHHHHHhhcC------CCCCcEEEEcC------CC---Cccchhh-----HHhhhcCCcceeccCCc
Q psy2654 1815 NPSTREWKDGLFSCLIREQAQST------GDGPKWMVMDG------DI---DPMWIES-----LNTVMDDNKVLTLASNE 1874 (1949)
Q Consensus 1815 ~~~~~~w~dG~l~~~~r~~~~~~------~~~~~Wiv~Dg------~~---d~~w~e~-----ln~~lddn~~l~l~~ge 1874 (1949)
...+ .+.+|+..... ......|.+|. .. +...... |-.++|.-....++---
T Consensus 189 vGEs--------Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w 260 (413)
T PLN00020 189 AGEP--------GKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDW 260 (413)
T ss_pred CCcH--------HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccc
Confidence 6554 45555443221 22345666672 11 1111111 22233432222222100
Q ss_pred -eeecCCCceEEEEeCCCCCCChhhhc--cceEE
Q psy2654 1875 -RIALTPSMRLLFEISNLRTATPATVS--RAGIL 1905 (1949)
Q Consensus 1875 -~i~~~~~~~~ifE~~~l~~asPa~vs--r~~~v 1905 (1949)
-..-.+.+.+|..|.+.+.+-||.+- |+--.
T Consensus 261 ~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 261 REKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred cccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 01123568899999999999999987 65443
No 158
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.16 E-value=0.0019 Score=85.17 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=76.5
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcc-------eEEEEeCCCCCCHhh-h-hh--hcccc--cccCccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGI-------MVYVFNCSEQMDYRS-C-GN--IYKGL--AQTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~-------~~~~~n~~~~~~~~~-l-~~--~~~g~--~~~g~w~~~de~~~l 1495 (1949)
+....++++|++||||+.+++.+++...| +...++|........ . +. +-.|+ ...|.-+|+|||+++
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm 569 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC 569 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC
Confidence 45556889999999999999999987544 344444443211000 0 00 00121 122445566666666
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcccccee
Q psy2654 1496 SVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNF 1575 (1949)
Q Consensus 1496 ~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 1575 (1949)
++...+.+. ..+ .+.++.+
T Consensus 570 s~~~Q~aLl----------------------------------------------------EaM---------EqqtIsI 588 (915)
T PTZ00111 570 HNESRLSLY----------------------------------------------------EVM---------EQQTVTI 588 (915)
T ss_pred CHHHHHHHH----------------------------------------------------HHH---------hCCEEEE
Confidence 555544432 211 1122222
Q ss_pred --ccceEEEecCeeEEEEeCCCC---------CCCCCChhhHhhccccccc--ccCCHH
Q psy2654 1576 --MGENIKLVTTVGMFITMNPGY---------AGRAELPENLKALFRPCAM--VVPDFA 1621 (1949)
Q Consensus 1576 --~~~~i~~~~~~~~f~tmnp~~---------~g~~~LP~~lk~~fr~v~~--~~pD~~ 1621 (1949)
.|-...++..|+++++.||-+ .+.-.||+.|.++|=-|.+ ..||..
T Consensus 589 ~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 589 AKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred ecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChH
Confidence 256667888999999999942 1345799999999965544 344433
No 159
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.16 E-value=0.0053 Score=77.58 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHhhhhh-------hcccccccCccccccccccccc
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYRSCGN-------IYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~~l~~-------~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
.+++||+|+|||++++++|+.+ |..++.++|.+-+. ..+.. -+......-..+++||++.+..
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC
Confidence 4689999999999999999987 67788888865221 11110 0111222345677777776643
No 160
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.002 Score=84.53 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1421 YITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1421 ~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
...|..++..+.-. +++||+|||||++++.||+.++..
T Consensus 25 v~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 25 LHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34455666654332 488999999999999999998754
No 161
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0031 Score=80.53 Aligned_cols=132 Identities=14% Similarity=0.203 Sum_probs=73.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCC--Ccccc---cCCCccCcccccccccCCCCCcccChHHHHHHHH---
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK--PMYND---LEPKAVTNDELFGIINPSTREWKDGLFSCLIREQ--- 1833 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~--~~~~~---i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~--- 1833 (1949)
...|.++++||||+||||+++++|+++.-.+.. .+..+ .....-+..+++ .+++.. ..| ...+|+.
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~-el~~~~---~~~--vd~iR~l~~~ 107 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL-EIDAAS---NNS--VEDVRDLREK 107 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE-Eecccc---cCC--HHHHHHHHHH
Confidence 345778999999999999999999988532111 11000 000000001111 111111 112 1223332
Q ss_pred hhc--CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCC
Q psy2654 1834 AQS--TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1834 ~~~--~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~ 1910 (1949)
... .....+.||+|.+ |..--+.+|.+|.. +. ..|+++.+||-+.+...+.|+..|||..+.|.+-
T Consensus 108 ~~~~p~~~~~kVVIIDEa-d~ls~~a~naLLk~-----LE-----ep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~l 175 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEA-HMMSKSAFNALLKT-----LE-----EPPEHVIFILATTEPEKMPPTILSRTQHFRFRRL 175 (504)
T ss_pred HhhccccCCCeEEEEECc-cccCHHHHHHHHHH-----HH-----hCCCCEEEEEEcCChhhCChHHhcceEEEEecCC
Confidence 111 1235689999975 22222344444421 10 1245678888898899999999999999999863
No 162
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0024 Score=80.93 Aligned_cols=139 Identities=13% Similarity=0.202 Sum_probs=79.7
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCC---Ccccc---cCCCccCcccccccccCCCCCcccChHHHHHHHHhh
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK---PMYND---LEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQ 1835 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~---~~~~~---i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~ 1835 (1949)
...|..+++||+|+||||+++++++++.-..+. ++..+ ....+-...+++ ..+..+. -| ...+|+...
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~-eldaas~---~g--Id~IRelie 107 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII-EMDAASN---RG--IDDIRELIE 107 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE-Eeccccc---cC--HHHHHHHHH
Confidence 345678999999999999999999988422111 11110 000000001111 0011110 02 234454432
Q ss_pred c----C-CCCCcEEEEcCCCCccchhhHHhh---hcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEe
Q psy2654 1836 S----T-GDGPKWMVMDGDIDPMWIESLNTV---MDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYI 1907 (1949)
Q Consensus 1836 ~----~-~~~~~Wiv~Dg~~d~~w~e~ln~~---lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~ 1907 (1949)
. + ....+-+|+|.. +..--++.|.+ |++ .|+++++||-+.+...+-|+..|||-.+.|
T Consensus 108 ~~~~~P~~~~~KVvIIDEa-d~Lt~~A~NALLK~LEE-------------pp~~t~FIL~ttd~~kL~~tI~SRc~~~~F 173 (535)
T PRK08451 108 QTKYKPSMARFKIFIIDEV-HMLTKEAFNALLKTLEE-------------PPSYVKFILATTDPLKLPATILSRTQHFRF 173 (535)
T ss_pred HHhhCcccCCeEEEEEECc-ccCCHHHHHHHHHHHhh-------------cCCceEEEEEECChhhCchHHHhhceeEEc
Confidence 2 1 134578899973 22223444444 333 367899999999999999999999999999
Q ss_pred cCCCCCchhhHHhhhc
Q psy2654 1908 NPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1908 ~~~~~~w~~~~~~w~~ 1923 (1949)
.+-. ..-+..|+.
T Consensus 174 ~~Ls---~~ei~~~L~ 186 (535)
T PRK08451 174 KQIP---QNSIISHLK 186 (535)
T ss_pred CCCC---HHHHHHHHH
Confidence 8754 244555654
No 163
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.0018 Score=83.75 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=75.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----ccccC-CCccCcccccccccCCCCCcccCh--HHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDLE-PKAVTNDELFGIINPSTREWKDGL--FSCLI 1830 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i~-p~~~~~~el~G~~~~~~~~w~dG~--l~~~~ 1830 (1949)
...|..|+.||+|+||||+.+++|+.++-..+ .++ ++.+. -.+.+.-++ +.. +..|+ +-.++
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei----daa---s~~~VddiR~li 108 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI----DAA---SRTKVEDTRELL 108 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee----ccc---ccCCHHHHHHHH
Confidence 44678999999999999999999998843211 111 00010 011111111 221 12231 12222
Q ss_pred HHHhhc-CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEe
Q psy2654 1831 REQAQS-TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYI 1907 (1949)
Q Consensus 1831 r~~~~~-~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~ 1907 (1949)
.+.... .....+-+|+|.. +...-...|-..|++ .|+++++|+-|++...+.|..+|||-.++|
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-------------Pp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f 175 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 (647)
T ss_pred HHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-------------CCCCeEEEEecCCccccchHHHhhheEeeC
Confidence 222221 1234578888953 333223333333443 467889999999999999999999999998
Q ss_pred cCCC
Q psy2654 1908 NPQD 1911 (1949)
Q Consensus 1908 ~~~~ 1911 (1949)
.+-.
T Consensus 176 ~~Ls 179 (647)
T PRK07994 176 KALD 179 (647)
T ss_pred CCCC
Confidence 8654
No 164
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0018 Score=83.50 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=82.0
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----ccccCC---CccCcccccccccCCCCCcccCh
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDLEP---KAVTNDELFGIINPSTREWKDGL 1825 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i~p---~~~~~~el~G~~~~~~~~w~dG~ 1825 (1949)
....=...|..++.||+|+||||+.+++|++++-..+ .++ +..+++ .+.+.-++ |..++ -|
T Consensus 28 ~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei----daas~---~g- 99 (584)
T PRK14952 28 ALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL----DAASH---GG- 99 (584)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe----ccccc---cC-
Confidence 3333345678999999999999999999998842111 111 111222 22222222 22111 02
Q ss_pred HHHHHHHH----hhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc
Q psy2654 1826 FSCLIREQ----AQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS 1900 (1949)
Q Consensus 1826 l~~~~r~~----~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs 1900 (1949)
..-+|+. ...+ ....+-+|+|.. +-.=-+..|.+|. +|- ..|+++.+||-|++...+.|+..|
T Consensus 100 -vd~iRel~~~~~~~P~~~~~KVvIIDEa-h~Lt~~A~NALLK-----~LE-----Epp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 100 -VDDTRELRDRAFYAPAQSRYRIFIVDEA-HMVTTAGFNALLK-----IVE-----EPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred -HHHHHHHHHHHHhhhhcCCceEEEEECC-CcCCHHHHHHHHH-----HHh-----cCCCCeEEEEEeCChHhhHHHHHH
Confidence 1222322 1111 235588999962 2111245555541 111 156688999999999999999999
Q ss_pred cceEEEecCCCCCchhhHHhhhc
Q psy2654 1901 RAGILYINPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1901 r~~~v~~~~~~~~w~~~~~~w~~ 1923 (1949)
||-.+.|.+-.. .-+..|+.
T Consensus 168 Rc~~~~F~~l~~---~~i~~~L~ 187 (584)
T PRK14952 168 RTHHYPFRLLPP---RTMRALIA 187 (584)
T ss_pred hceEEEeeCCCH---HHHHHHHH
Confidence 999999986432 34455654
No 165
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.12 E-value=0.0013 Score=84.98 Aligned_cols=138 Identities=22% Similarity=0.348 Sum_probs=84.1
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccC-----CCcccccCCCc--cC----ccccccccc-CCC---C--------
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-----KPMYNDLEPKA--VT----NDELFGIIN-PST---R-------- 1819 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~-----~~~~~~i~p~~--~~----~~el~G~~~-~~~---~-------- 1819 (1949)
...+|+|+||||+|||++.+++.....+... ...+..+|..+ .+ .+.++|+.. |.. +
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 3578999999999999999999765422111 12233344221 11 134566532 100 0
Q ss_pred CcccChHHHHHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceec-----cCCce----------eecCCCc
Q psy2654 1820 EWKDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTL-----ASNER----------IALTPSM 1882 (1949)
Q Consensus 1820 ~w~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l-----~~ge~----------i~~~~~~ 1882 (1949)
+-+.|.+.. ....-+++| +.+++...+.|-.+|++.+...- ++++. -..|.++
T Consensus 165 ~~~~G~l~~----------a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (531)
T TIGR02902 165 QPKPGAVTR----------AHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADF 234 (531)
T ss_pred cccCchhhc----------cCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccce
Confidence 012232221 122568889 45688888888888887664321 11111 2357788
Q ss_pred eEEEEeC-CCCCCChhhhccceEEEecCC
Q psy2654 1883 RLLFEIS-NLRTATPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1883 ~~ifE~~-~l~~asPa~vsr~~~v~~~~~ 1910 (1949)
|+|..|+ ++..+.|+..|||-.+++.+-
T Consensus 235 rlI~ATt~~p~~L~paLrsR~~~I~f~pL 263 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRSRCVEIFFRPL 263 (531)
T ss_pred EEEEEecCCcccCChHHhhhhheeeCCCC
Confidence 9998875 688899999999999998763
No 166
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0023 Score=82.81 Aligned_cols=146 Identities=16% Similarity=0.275 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc----CC----Cc-----ccccCC-CccCccccccc
Q psy2654 1748 DSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK----KK----PM-----YNDLEP-KAVTNDELFGI 1813 (1949)
Q Consensus 1748 ~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~----~~----~~-----~~~i~p-~~~~~~el~G~ 1813 (1949)
+..+..+.+.+..-...|..++.||+|+||||+.+++|++++-.+ +. ++ +..+.- .+.+.-+
T Consensus 22 e~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~e---- 97 (618)
T PRK14951 22 EHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTE---- 97 (618)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceee----
Confidence 344444445555545668899999999999999999999985211 00 00 111110 1111111
Q ss_pred ccCCCCCcccCh--HHHHHHHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCC
Q psy2654 1814 INPSTREWKDGL--FSCLIREQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISN 1890 (1949)
Q Consensus 1814 ~~~~~~~w~dG~--l~~~~r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~ 1890 (1949)
+|..+ ..|+ +-.++......+ ....+.+|+|.. |..=-+..|.+| |.| | ..|+++.+||-|.|
T Consensus 98 ldaas---~~~Vd~iReli~~~~~~p~~g~~KV~IIDEv-h~Ls~~a~NaLL---KtL-----E--EPP~~~~fIL~Ttd 163 (618)
T PRK14951 98 LDAAS---NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEV-HMLTNTAFNAML---KTL-----E--EPPEYLKFVLATTD 163 (618)
T ss_pred cCccc---ccCHHHHHHHHHHHHhCcccCCceEEEEECh-hhCCHHHHHHHH---Hhc-----c--cCCCCeEEEEEECC
Confidence 12211 2232 222222222222 234589999963 112224455555 111 1 14678899999999
Q ss_pred CCCCChhhhccceEEEecCCC
Q psy2654 1891 LRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1891 l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
...+-|...|||-.+.|.+-.
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls 184 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMA 184 (618)
T ss_pred chhhhHHHHHhceeeecCCCC
Confidence 999999999999999987643
No 167
>PRK06620 hypothetical protein; Validated
Probab=97.11 E-value=0.0015 Score=73.97 Aligned_cols=78 Identities=12% Similarity=0.042 Sum_probs=50.3
Q ss_pred CCCccccccchHHHHHHHHHHHh-c-----cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhccccc
Q psy2654 1408 TPRLVITPLTDRCYITLSQSLHL-N-----MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLA 1481 (1949)
Q Consensus 1408 ~~~~v~t~~t~r~~~~l~~al~~-~-----~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~ 1481 (1949)
-..||.++.....+..+...... . .+.+++||+|+|||++++.+++..+..++. ..... . ...
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-----~----~~~ 83 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-----E----EIL 83 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-----h----hHH
Confidence 45688888777766666554431 1 224799999999999999999988864322 11110 0 112
Q ss_pred ccCcccccccccccc
Q psy2654 1482 QTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1482 ~~g~w~~~de~~~l~ 1496 (1949)
.....+|+||++.+.
T Consensus 84 ~~~d~lliDdi~~~~ 98 (214)
T PRK06620 84 EKYNAFIIEDIENWQ 98 (214)
T ss_pred hcCCEEEEeccccch
Confidence 345678889988653
No 168
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.0015 Score=78.71 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=83.7
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhcc----CCCc-----ccccCCCccCcccccccccCCCC-----CcccChHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK----KKPM-----YNDLEPKAVTNDELFGIINPSTR-----EWKDGLFS 1827 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~----~~~~-----~~~i~p~~~~~~el~G~~~~~~~-----~w~dG~l~ 1827 (1949)
...|+.++.||+|+|||++++.+|+++.-.. ..++ ++.+.... ..+++ .+.|.+. .....+-+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~--HpD~~-~~~p~~~~~~~g~~~~~I~i 95 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGS--HPDFY-EITPLSDEPENGRKLLQIKI 95 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCC--CCCEE-EEecccccccccccCCCcCH
Confidence 5568999999999999999999999873111 0011 01111111 11211 2222211 11111334
Q ss_pred HHHHHHhhc----CC-CCCcEEEEcCCC---CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1828 CLIREQAQS----TG-DGPKWMVMDGDI---DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1828 ~~~r~~~~~----~~-~~~~Wiv~Dg~~---d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
.-+|+.... +. ...+.+| |.|. |+.....|-..|++- |++..+|+-+++...+.|...
T Consensus 96 d~iR~l~~~~~~~p~~~~~kV~i-iEp~~~Ld~~a~naLLk~LEep-------------~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 96 DAVREIIDNVYLTSVRGGLRVIL-IHPAESMNLQAANSLLKVLEEP-------------PPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHHHhhCcccCCceEEE-EechhhCCHHHHHHHHHHHHhC-------------cCCCEEEEEeCChHhChHHHH
Confidence 455554322 22 2335554 5554 555555555555441 345679999999999999999
Q ss_pred ccceEEEecCCCCCchhhHHhhhccC
Q psy2654 1900 SRAGILYINPQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1900 sr~~~v~~~~~~~~w~~~~~~w~~~~ 1925 (1949)
|||-.+.|.+-. ...+..||...
T Consensus 162 SRc~~~~~~~~~---~~~~~~~L~~~ 184 (325)
T PRK08699 162 SRCRKMVLPAPS---HEEALAYLRER 184 (325)
T ss_pred HHhhhhcCCCCC---HHHHHHHHHhc
Confidence 999999998743 35677788654
No 169
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.11 E-value=0.0028 Score=82.18 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=66.2
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhccc--------c--
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKG--------L-- 1480 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~g--------~-- 1480 (1949)
+|.+.++...+..+.....++++.|++||||+.+++.+..... .|++.+||..- +...+...+-| +
T Consensus 144 s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~-~~~~~~~~lfg~~~g~~~~~~~ 222 (469)
T PRK10923 144 APAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI-PKDLIESELFGHEKGAFTGANT 222 (469)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCC-CHHHHHHHhcCCCCCCCCCCCc
Confidence 4667777777777778888899999999999999999988864 69999999875 33333333322 1
Q ss_pred -------cccCccccccccccccchhhHHHHHH
Q psy2654 1481 -------AQTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1481 -------~~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
...|.-+++||++.++.+....+...
T Consensus 223 ~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~ 255 (469)
T PRK10923 223 IRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRV 255 (469)
T ss_pred CCCCCeeECCCCEEEEeccccCCHHHHHHHHHH
Confidence 11244577888888888777665443
No 170
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.10 E-value=0.0025 Score=77.92 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=69.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC--CCCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST--GDGP 1841 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~--~~~~ 1841 (1949)
.+.++++||||+|||++++.+++.. ...+..+|+.. | . .+.+ ...+.+..... ....
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~-----~~~~~~i~~~~-------~-------~-~~~i-~~~l~~~~~~~~~~~~~ 101 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEV-----GAEVLFVNGSD-------C-------R-IDFV-RNRLTRFASTVSLTGGG 101 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh-----CccceEeccCc-------c-------c-HHHH-HHHHHHHHHhhcccCCC
Confidence 4567779999999999999998765 11222334322 1 0 1111 11122211111 1235
Q ss_pred cEEEEcCC--C-CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1842 KWMVMDGD--I-DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1842 ~Wiv~Dg~--~-d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
+-||+|.. + ++...+.|.++++. .++++++|+.+.+...+.|+..|||..+.+..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~-------------~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~ 159 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEA-------------YSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHh-------------cCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence 77888863 2 33344555555543 24678899999999999999999999998844
No 171
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.10 E-value=0.00064 Score=86.21 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh
Q psy2654 1420 CYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI 1455 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l 1455 (1949)
....+..++..+...++.||+|||||++++.++..+
T Consensus 200 ~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 200 AKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred HHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 345566666677778899999999999999999754
No 172
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.10 E-value=0.0027 Score=77.84 Aligned_cols=81 Identities=21% Similarity=0.167 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcc--CCCCCCCCCCChhHHHHHHHHHhcc-----eEEEEeCCCCCCHhhhhhhcccccc-------cC
Q psy2654 1419 RCYITLSQSLHLNM--GGAPAGPAGTGKTETTKDLGKAIGI-----MVYVFNCSEQMDYRSCGNIYKGLAQ-------TG 1484 (1949)
Q Consensus 1419 r~~~~l~~al~~~~--~~~l~G~~g~GKt~~v~~la~~lg~-----~~~~~n~~~~~~~~~l~~~~~g~~~-------~g 1484 (1949)
.....+..++..+. +.+++||+|+|||++++.+++.+.. .++.+|+++......+...+...+. ..
T Consensus 24 ~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 103 (319)
T PRK00440 24 EIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPF 103 (319)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCc
Confidence 34555666666543 2568999999999999999998742 4566666665544433333222211 12
Q ss_pred ccccccccccccchh
Q psy2654 1485 AWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1485 ~w~~~de~~~l~~~~ 1499 (1949)
..+++||++.++.+.
T Consensus 104 ~vviiDe~~~l~~~~ 118 (319)
T PRK00440 104 KIIFLDEADNLTSDA 118 (319)
T ss_pred eEEEEeCcccCCHHH
Confidence 356667766665543
No 173
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0034 Score=79.43 Aligned_cols=126 Identities=15% Similarity=0.250 Sum_probs=72.3
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccC----CCccc-----ccC-CCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK----KPMYN-----DLE-PKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~----~~~~~-----~i~-p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
..|..+++||+|+||||+++.+|+++.-... .++-. .+. ..+.+.-++-|. ..-| ...+|+
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~-------~~~g--id~ir~ 108 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGA-------SHRG--IEDIRQ 108 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecc-------ccCC--HHHHHH
Confidence 3578999999999999999999998842211 01100 000 111111112121 0111 122332
Q ss_pred Hhh-----cCCCCCcEEEEcCCCCccchhhHHhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceE
Q psy2654 1833 QAQ-----STGDGPKWMVMDGDIDPMWIESLNTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGI 1904 (1949)
Q Consensus 1833 ~~~-----~~~~~~~Wiv~Dg~~d~~w~e~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~ 1904 (1949)
... ......+.||+|.. |..--+..|.++ ++ .|+++.+||-+++...+.|+..|||.+
T Consensus 109 i~~~l~~~~~~~~~kvvIIdea-d~lt~~~~n~LLk~lEe-------------p~~~~~~Il~t~~~~kl~~tI~sRc~~ 174 (451)
T PRK06305 109 INETVLFTPSKSRYKIYIIDEV-HMLTKEAFNSLLKTLEE-------------PPQHVKFFLATTEIHKIPGTILSRCQK 174 (451)
T ss_pred HHHHHHhhhhcCCCEEEEEecH-HhhCHHHHHHHHHHhhc-------------CCCCceEEEEeCChHhcchHHHHhceE
Confidence 221 11245689999973 211123334443 32 346778999999999999999999999
Q ss_pred EEecCCC
Q psy2654 1905 LYINPQD 1911 (1949)
Q Consensus 1905 v~~~~~~ 1911 (1949)
|.+.+-.
T Consensus 175 v~f~~l~ 181 (451)
T PRK06305 175 MHLKRIP 181 (451)
T ss_pred EeCCCCC
Confidence 9997543
No 174
>PRK04195 replication factor C large subunit; Provisional
Probab=97.10 E-value=0.0044 Score=79.88 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=69.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCC---CC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTG---DG 1840 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~---~~ 1840 (1949)
.++++|+||||+||||+++++|+.+ ...+..+|+..... ...+..++........ ..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r~---------------~~~i~~~i~~~~~~~sl~~~~ 98 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQRT---------------ADVIERVAGEAATSGSLFGAR 98 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEccccccc---------------HHHHHHHHHHhhccCcccCCC
Confidence 5789999999999999999999876 22223333321110 0123333333222111 24
Q ss_pred CcEEEEcCC--C----CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCCh-hhhccceEEEecCCC
Q psy2654 1841 PKWMVMDGD--I----DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATP-ATVSRAGILYINPQD 1911 (1949)
Q Consensus 1841 ~~Wiv~Dg~--~----d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asP-a~vsr~~~v~~~~~~ 1911 (1949)
.+-||+|.. + |...++.|..+++.. +..+|+-+.+.....| ...+||..|.|.+-.
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---------------~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~ 161 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIKKA---------------KQPIILTANDPYDPSLRELRNACLMIEFKRLS 161 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHcC---------------CCCEEEeccCccccchhhHhccceEEEecCCC
Confidence 578999842 1 224566666666532 3347777777777777 668999999998654
No 175
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.09 E-value=0.0012 Score=91.40 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC
Q psy2654 1424 LSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM 1468 (1949)
Q Consensus 1424 l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~ 1468 (1949)
+-.+++...|++++||+|||||.+||+||...|.|++.+.+++-.
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 344567788999999999999999999999999999999987743
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.00077 Score=71.37 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=48.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcce---EEEEeCCCCCCH--------------------hhhhhhcccccccC-cccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIM---VYVFNCSEQMDY--------------------RSCGNIYKGLAQTG-AWGC 1488 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~---~~~~n~~~~~~~--------------------~~l~~~~~g~~~~g-~w~~ 1488 (1949)
..+++||+|||||++++.+|..++.. ++.++|+..... ..+...+..+.... ..++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999997 888888765432 22223333333333 6666
Q ss_pred ccccccccchhhHH
Q psy2654 1489 FDEFNRISVEVLSV 1502 (1949)
Q Consensus 1489 ~de~~~l~~~~ls~ 1502 (1949)
+||++.+.....+.
T Consensus 84 iDei~~~~~~~~~~ 97 (148)
T smart00382 84 LDEITSLLDAEQEA 97 (148)
T ss_pred EECCcccCCHHHHH
Confidence 77777766655554
No 177
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.003 Score=80.52 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhc
Q psy2654 1420 CYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
....+..++..+..+ +++||+|+|||++++.+|+.+.
T Consensus 24 iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 24 IKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345666777665544 4789999999999999999995
No 178
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.07 E-value=0.0041 Score=83.58 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=78.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCc-cCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKA-VTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~-~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
..++|+||||+||||+.+.+|++++ ..+.+++-.. -+..++.|.-.. -.+=..|-+...++++. ..+.-
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~-----~~~~~i~~~~~~d~~~i~g~~~~-~~g~~~G~~~~~l~~~~----~~~~v 419 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATG-----RKYVRMALGGVRDEAEIRGHRRT-YIGSMPGKLIQKMAKVG----VKNPL 419 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEEcCCCCCHHHhccchhc-cCCCCCcHHHHHHHhcC----CCCCE
Confidence 4699999999999999999999872 2233333222 222344443210 00113566666665542 23356
Q ss_pred EEEcCC--CCcc----chhhHHhhhcCCcceeccC--Cce-eecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1844 MVMDGD--IDPM----WIESLNTVMDDNKVLTLAS--NER-IALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1844 iv~Dg~--~d~~----w~e~ln~~lddn~~l~l~~--ge~-i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
|++|.. +.+. -...|-.+||++...++.. .+. +.+ +++-+|. |.|...++||.++||-+|.+.+
T Consensus 420 illDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~-TaN~~~i~~aLl~R~~ii~~~~ 492 (784)
T PRK10787 420 FLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVA-TSNSMNIPAPLLDRMEVIRLSG 492 (784)
T ss_pred EEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccC-CceEEEE-cCCCCCCCHHHhcceeeeecCC
Confidence 888843 2222 2478888888765444332 121 222 4454444 6666689999999999987653
No 179
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.0025 Score=82.98 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1419 RCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
.....+..++..+..+ +++||+|+|||++++.+|+.+...
T Consensus 25 ~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 25 HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3455677778776544 588999999999999999998753
No 180
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.0048 Score=77.59 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....+..++..+..+ +++||+|+|||++++.+|+.+..
T Consensus 21 vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 21 LVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 444666777766544 48899999999999999998753
No 181
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.06 E-value=0.0048 Score=81.19 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=28.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh----------cceEEEEeCCC
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSE 1466 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l----------g~~~~~~n~~~ 1466 (1949)
..+++||+|||||++++.+++.. +.+++.+||..
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 46789999999999999998766 45789999975
No 182
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.06 E-value=0.00075 Score=80.15 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=66.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCC--CcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKK--PMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~--~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
.+|++.||||||||++.+.+++.+...+.. ..+..++. .++.|.|...+. .-...++.++ ...
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~-----~~l~~~~~g~~~----~~~~~~~~~a------~~g 123 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR-----DDLVGQYIGHTA----PKTKEILKRA------MGG 123 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH-----HHHhHhhcccch----HHHHHHHHHc------cCc
Confidence 479999999999999999999988554321 12333332 344444322221 1112222222 113
Q ss_pred EEEEcCC-----------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-----CCCCCChhhhccce-EE
Q psy2654 1843 WMVMDGD-----------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-----NLRTATPATVSRAG-IL 1905 (1949)
Q Consensus 1843 Wiv~Dg~-----------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-----~l~~asPa~vsr~~-~v 1905 (1949)
-+++|.. .....++.|..+|++.+ .++++|+.+. .+-...|+..|||. .|
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i 190 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHV 190 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEE
Confidence 5677742 12334566667776543 4566777643 22335899999996 46
Q ss_pred EecC
Q psy2654 1906 YINP 1909 (1949)
Q Consensus 1906 ~~~~ 1909 (1949)
+|.+
T Consensus 191 ~fp~ 194 (284)
T TIGR02880 191 DFPD 194 (284)
T ss_pred EeCC
Confidence 6664
No 183
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0026 Score=81.15 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1418 DRCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
+.....+..++..+.. .+++||+|+|||++++.+|+.++.
T Consensus 22 ~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 22 QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445567778877655 348899999999999999998864
No 184
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.05 E-value=0.0021 Score=74.30 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=49.3
Q ss_pred CccccccchHHHHHHHHHHHhc--cCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhcccccccC
Q psy2654 1410 RLVITPLTDRCYITLSQSLHLN--MGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKGLAQTG 1484 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~~--~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~g~~~~g 1484 (1949)
.++.. .-...+..+....... .+.+++||+|||||++++++|+.++ ..+..++++..... ...++.+..+ -
T Consensus 23 ~f~~~-~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~-~ 98 (235)
T PRK08084 23 SFYPG-DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--VPEVLEGMEQ-L 98 (235)
T ss_pred ccccC-ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--hHHHHHHhhh-C
Confidence 45555 3344444444433322 3346899999999999999998765 45666666543221 1122222222 2
Q ss_pred ccccccccccccc
Q psy2654 1485 AWGCFDEFNRISV 1497 (1949)
Q Consensus 1485 ~w~~~de~~~l~~ 1497 (1949)
.++++||++.++.
T Consensus 99 dlliiDdi~~~~~ 111 (235)
T PRK08084 99 SLVCIDNIECIAG 111 (235)
T ss_pred CEEEEeChhhhcC
Confidence 5788888887754
No 185
>KOG0478|consensus
Probab=97.04 E-value=0.0025 Score=79.07 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=91.7
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhh----------hhh-cc-c--ccccCccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC----------GNI-YK-G--LAQTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l----------~~~-~~-g--~~~~g~w~~~de~~~l 1495 (1949)
.....+|+|.+|||||-+.|+.++.+-|=+++=- -+.+...| .+. +. | +++.|...|+||||++
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSG--kGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSG--KGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcceeecC--CccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhh
Confidence 3345789999999999999999999988877532 11111111 111 11 2 2566777888888888
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcccccee
Q psy2654 1496 SVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNF 1575 (1949)
Q Consensus 1496 ~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 1575 (1949)
+...-|++-+-+.+ |.-++. ..
T Consensus 539 ~dStrSvLhEvMEQ------------------------------------------------QTvSIA-----KA----- 560 (804)
T KOG0478|consen 539 SDSTRSVLHEVMEQ------------------------------------------------QTLSIA-----KA----- 560 (804)
T ss_pred hHHHHHHHHHHHHH------------------------------------------------hhhhHh-----hc-----
Confidence 88777665322211 100000 01
Q ss_pred ccceEEEecCeeEEEEeCC---CCCCCC------CChhhHhhcccccccccCCHHHHHHHHHhhhchhhHHHHHHHHHHH
Q psy2654 1576 MGENIKLVTTVGMFITMNP---GYAGRA------ELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITL 1646 (1949)
Q Consensus 1576 ~~~~i~~~~~~~~f~tmnp---~~~g~~------~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~la~k~~~~ 1646 (1949)
|---.+|..+.+.|+-|| -|.-++ .||+.|.++|--|+++.-+... ...+.|+..++.+
T Consensus 561 -GII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE-----------~~Dr~La~HivsL 628 (804)
T KOG0478|consen 561 -GIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDE-----------RSDRRLADHIVAL 628 (804)
T ss_pred -ceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcch-----------hHHHHHHHHHHHh
Confidence 222356777899999999 253333 5899999999998875432222 1245677888887
Q ss_pred HHH
Q psy2654 1647 YSL 1649 (1949)
Q Consensus 1647 ~~~ 1649 (1949)
|-.
T Consensus 629 y~e 631 (804)
T KOG0478|consen 629 YPE 631 (804)
T ss_pred ccc
Confidence 744
No 186
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.04 E-value=0.0013 Score=77.49 Aligned_cols=120 Identities=21% Similarity=0.190 Sum_probs=63.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
.+++|+|||||||||+.+.+|+.+...+.......+ .++..++.|.+...+ ...+++...... ..-|
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v---~~~~~~l~~~~~g~~--------~~~~~~~~~~a~--~~VL 109 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLI---EVERADLVGEYIGHT--------AQKTREVIKKAL--GGVL 109 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceE---EecHHHhhhhhccch--------HHHHHHHHHhcc--CCEE
Confidence 468999999999999999999987443211110111 123345666654433 122222221111 2467
Q ss_pred EEcCCC----------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe-----CCCCCCChhhhccceE-EEec
Q psy2654 1845 VMDGDI----------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI-----SNLRTATPATVSRAGI-LYIN 1908 (1949)
Q Consensus 1845 v~Dg~~----------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~-----~~l~~asPa~vsr~~~-v~~~ 1908 (1949)
++|..- ...-++.|...+++.+ .++.+++.. +.+....|+..|||+. |.+.
T Consensus 110 ~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~ 176 (261)
T TIGR02881 110 FIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP 176 (261)
T ss_pred EEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEEC
Confidence 778421 1223444555555432 223344432 3344567999999964 6776
Q ss_pred CC
Q psy2654 1909 PQ 1910 (1949)
Q Consensus 1909 ~~ 1910 (1949)
+-
T Consensus 177 ~~ 178 (261)
T TIGR02881 177 DY 178 (261)
T ss_pred CC
Confidence 43
No 187
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.04 E-value=0.0044 Score=79.86 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=64.1
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhccccc---------
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKGLA--------- 1481 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~g~~--------- 1481 (1949)
.+...++...+..+.....++++.|++||||+.+++.+-...+ .|++.+||..-.+ ..+...+-|..
T Consensus 145 s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~ 223 (445)
T TIGR02915 145 SPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVK 223 (445)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCcc
Confidence 3556666666666667788889999999999999999877654 6899999997533 44444333311
Q ss_pred --------ccCccccccccccccchhhHHHHHH
Q psy2654 1482 --------QTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1482 --------~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
..|.-+++||++.++.++...+...
T Consensus 224 ~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~ 256 (445)
T TIGR02915 224 QTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRF 256 (445)
T ss_pred CCCCceeECCCCEEEEechhhCCHHHHHHHHHH
Confidence 2244577788888777776665443
No 188
>KOG0989|consensus
Probab=97.03 E-value=0.0016 Score=73.71 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=69.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhh----------
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQ---------- 1835 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~---------- 1835 (1949)
..+++||||+||||++.++|++++- .+......+.-.+ ....|+= +.|...+
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lna---------------SderGis--vvr~Kik~fakl~~~~~ 120 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNA---------------SDERGIS--VVREKIKNFAKLTVLLK 120 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcc---------------ccccccc--chhhhhcCHHHHhhccc
Confidence 4688999999999999999998732 1111111110000 0111111 2221110
Q ss_pred --c--CCCCCcEEEEcC-C-CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1836 --S--TGDGPKWMVMDG-D-IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1836 --~--~~~~~~Wiv~Dg-~-~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
. +.+-.+.||||. + +.+.---+|.+++|+ .+.++|++|=+..++.+-+-.+|||.=+.|.+
T Consensus 121 ~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------------~s~~trFiLIcnylsrii~pi~SRC~KfrFk~ 187 (346)
T KOG0989|consen 121 RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------------FSRTTRFILICNYLSRIIRPLVSRCQKFRFKK 187 (346)
T ss_pred cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------------cccceEEEEEcCChhhCChHHHhhHHHhcCCC
Confidence 0 112238999994 2 333333567777766 24578999999999999999999999988875
No 189
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.01 E-value=0.0027 Score=80.90 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=73.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----cccc-CCCccCcccccccccCCCCCcccCh--HHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDL-EPKAVTNDELFGIINPSTREWKDGL--FSCLI 1830 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i-~p~~~~~~el~G~~~~~~~~w~dG~--l~~~~ 1830 (1949)
...|+.|+.||+|+||||+++.+|+++.-... .++ +..+ ...+.+.-++ ++. +.-|+ +-.++
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI----daa---s~igVd~IReIi 108 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL----DAA---SNNGVDEIRNII 108 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe----ccc---cccCHHHHHHHH
Confidence 34588999999999999999999998842111 000 0001 1111111111 221 11221 12222
Q ss_pred HHHhhcC-CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEe
Q psy2654 1831 REQAQST-GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYI 1907 (1949)
Q Consensus 1831 r~~~~~~-~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~ 1907 (1949)
......+ ....+-+|+|.. +++.-..+|-..|++ .|+++.+||-+++...+-|+..|||-.+.|
T Consensus 109 ~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------------Pp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF 175 (605)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------------PPKHVVFIFATTEFQKIPLTIISRCQRYNF 175 (605)
T ss_pred HHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------------CCCcEEEEEECCChHhhhHHHHhhhhhccc
Confidence 2222211 134578889963 233222333334333 356788999999999998999999999988
Q ss_pred cCC
Q psy2654 1908 NPQ 1910 (1949)
Q Consensus 1908 ~~~ 1910 (1949)
.+-
T Consensus 176 ~~L 178 (605)
T PRK05896 176 KKL 178 (605)
T ss_pred CCC
Confidence 764
No 190
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.98 E-value=0.0044 Score=78.35 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHHHHHHhc---cCCCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCC
Q psy2654 1410 RLVITPLTDRCYITLSQSLHLN---MGGAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSE 1466 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~~---~~~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~ 1466 (1949)
.||..|.....+..+....... .+.+++||+|+|||++++++|+.+ |..++.++|++
T Consensus 106 nFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 106 NFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred ccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4566666555544433332221 245699999999999999999986 45778778754
No 191
>PF13173 AAA_14: AAA domain
Probab=96.98 E-value=0.00046 Score=71.57 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=48.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhc--ceEEEEeCCCCCCHhh----hhhhccccc-ccCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIG--IMVYVFNCSEQMDYRS----CGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg--~~~~~~n~~~~~~~~~----l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
..++.||.|+|||++++++++.+. ..++.+||.+...... +...+.... ..+.++++||+++++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc
Confidence 456889999999999999999887 9999999988544321 223333222 3578888999988863
No 192
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.0033 Score=81.69 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----ccccC-CCccCcccccccccCCCCCcccC
Q psy2654 1754 VVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDLE-PKAVTNDELFGIINPSTREWKDG 1824 (1949)
Q Consensus 1754 ~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i~-p~~~~~~el~G~~~~~~~~w~dG 1824 (1949)
+.+.+..-...|..+++||+|+||||+.+.+|++++-... .++ +..+. ..+.+.-+ +|+.++ .|
T Consensus 28 L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e----idaas~---~~ 100 (559)
T PRK05563 28 LKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE----IDAASN---NG 100 (559)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE----eecccc---CC
Confidence 3333333345788999999999999999999999843211 111 00111 11111111 122211 12
Q ss_pred hHHHHHHHHhh----c-CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1825 LFSCLIREQAQ----S-TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1825 ~l~~~~r~~~~----~-~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
..-+|+... . .....+.+|+|.. +..=.+..|.+|. +| | ..|+++.+||-+++...+.|...
T Consensus 101 --vd~ir~i~~~v~~~p~~~~~kViIIDE~-~~Lt~~a~naLLK-----tL---E--epp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 101 --VDEIRDIRDKVKYAPSEAKYKVYIIDEV-HMLSTGAFNALLK-----TL---E--EPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred --HHHHHHHHHHHhhCcccCCeEEEEEECc-ccCCHHHHHHHHH-----Hh---c--CCCCCeEEEEEeCChhhCcHHHH
Confidence 223333221 1 1235689999973 3332356666653 11 1 12678889999999999988889
Q ss_pred ccceEEEecCCCCCchhhHHhhh
Q psy2654 1900 SRAGILYINPQDLGWNPYVLSWT 1922 (1949)
Q Consensus 1900 sr~~~v~~~~~~~~w~~~~~~w~ 1922 (1949)
|||..+-|.+-. ..-+..|+
T Consensus 168 SRc~~~~f~~~~---~~ei~~~L 187 (559)
T PRK05563 168 SRCQRFDFKRIS---VEDIVERL 187 (559)
T ss_pred hHheEEecCCCC---HHHHHHHH
Confidence 999999887543 23344454
No 193
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0042 Score=80.96 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=74.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCC----Ccccc--cCCCccCcccccccccCCCCCcccCh--HHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK----PMYND--LEPKAVTNDELFGIINPSTREWKDGL--FSCLIREQ 1833 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~----~~~~~--i~p~~~~~~el~G~~~~~~~~w~dG~--l~~~~r~~ 1833 (1949)
...|+.+++||+|+||||+++.+|+++.-.... ++-.+ +...+.+.-++ ++.+ ..|+ +-.+...+
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei----daas---n~~vd~IReLie~~ 110 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM----DAAS---NNGVDEIRELIENV 110 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE----eccc---cCCHHHHHHHHHHH
Confidence 346889999999999999999999987422110 11000 00011111111 1111 1121 12222222
Q ss_pred hhcCC-CCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1834 AQSTG-DGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1834 ~~~~~-~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
...+. ...+-+|+|.. +..=.++.|.+|.. | | ..|+++.+||-+++...+-|+..|||..+.|.+-.
T Consensus 111 ~~~P~~g~~KV~IIDEa-~~LT~~A~NALLKt---L-----E--EPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~ 178 (725)
T PRK07133 111 KNLPTQSKYKIYIIDEV-HMLSKSAFNALLKT---L-----E--EPPKHVIFILATTEVHKIPLTILSRVQRFNFRRIS 178 (725)
T ss_pred HhchhcCCCEEEEEECh-hhCCHHHHHHHHHH---h-----h--cCCCceEEEEEcCChhhhhHHHHhhceeEEccCCC
Confidence 22222 34578888963 22222455555421 0 0 13678889999999999999999999999988643
No 194
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.96 E-value=0.0032 Score=78.56 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1419 RCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
.....+..++..+..+ +++||+|+|||++++.+|+.+..+
T Consensus 21 ~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 21 HIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4455666777766543 589999999999999999998654
No 195
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0014 Score=75.72 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=48.1
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhcccc-cccCccccccccccc
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGL-AQTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~-~~~g~w~~~de~~~l 1495 (1949)
+....|++||||||||||-++|++|+..+-.++.+..|+-. ...-+..+|.=| -+.-+.+.+||++.+
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhh
Confidence 45578999999999999999999999999999999988721 112222222211 234566677777655
No 196
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0058 Score=76.29 Aligned_cols=135 Identities=10% Similarity=0.137 Sum_probs=74.0
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccC--hHHHHHHHHhhcC-CC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDG--LFSCLIREQAQST-GD 1839 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG--~l~~~~r~~~~~~-~~ 1839 (1949)
..++++++||||+|||++++.+++.+............++..+. .+. ....| -+..++.+....+ ..
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~-------l~~---~~~~~~~~i~~l~~~~~~~p~~~ 107 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE-------LDA---ASNNSVDDIRNLIDQVRIPPQTG 107 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE-------ecc---ccCCCHHHHHHHHHHHhhccccC
Confidence 34689999999999999999998876321110000001111110 010 01111 2233333332222 23
Q ss_pred CCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCCchhh
Q psy2654 1840 GPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWNPY 1917 (1949)
Q Consensus 1840 ~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~ 1917 (1949)
..+-|++|.. +.+.-.+.+...|++ .|+++.+|+.+++.....|+..|||.++.+.+-. ..-
T Consensus 108 ~~kiviIDE~~~l~~~~~~~ll~~le~-------------~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~---~~~ 171 (367)
T PRK14970 108 KYKIYIIDEVHMLSSAAFNAFLKTLEE-------------PPAHAIFILATTEKHKIIPTILSRCQIFDFKRIT---IKD 171 (367)
T ss_pred CcEEEEEeChhhcCHHHHHHHHHHHhC-------------CCCceEEEEEeCCcccCCHHHHhcceeEecCCcc---HHH
Confidence 4578889963 222112222222322 2456778999999999999999999998887643 233
Q ss_pred HHhhhc
Q psy2654 1918 VLSWTD 1923 (1949)
Q Consensus 1918 ~~~w~~ 1923 (1949)
+..|+.
T Consensus 172 l~~~l~ 177 (367)
T PRK14970 172 IKEHLA 177 (367)
T ss_pred HHHHHH
Confidence 444554
No 197
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.95 E-value=0.0071 Score=74.20 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=69.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCC---CCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTG---DGP 1841 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~---~~~ 1841 (1949)
.+++|+||||+|||++++.+++.+........+..+++.. .. + ...+...+.+.....+ ...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~-----------~~--~--~~~~~~~i~~~~~~~~~~~~~~ 103 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD-----------ER--G--IDVIRNKIKEFARTAPVGGAPF 103 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc-----------cc--c--hHHHHHHHHHHHhcCCCCCCCc
Confidence 3589999999999999999998763221111111111110 00 0 0122233333322211 235
Q ss_pred cEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1842 KWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1842 ~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
+.|++|+. +.+...+.|...+++ .+++.++||.+.+.....++..+||.++.+.+-.
T Consensus 104 ~vviiDe~~~l~~~~~~~L~~~le~-------------~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~ 162 (319)
T PRK00440 104 KIIFLDEADNLTSDAQQALRRTMEM-------------YSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162 (319)
T ss_pred eEEEEeCcccCCHHHHHHHHHHHhc-------------CCCCCeEEEEeCCccccchhHHHHhheeeeCCCC
Confidence 78999963 233333445555543 2345678888888888888899999999888644
No 198
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0042 Score=80.44 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....|..++..+... +++||.|+|||++++.||+.++.
T Consensus 24 vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 24 VVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445666777766553 57899999999999999999874
No 199
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.94 E-value=0.00092 Score=73.04 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=48.7
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCcccccccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l~ 1496 (1949)
..++.+||+|||||.++++||.-...|++.++..+-.. ...+.+.+.-+.+ +-|.+.+||++-+.
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAia 223 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIA 223 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhh
Confidence 45789999999999999999999999999999876322 3345555554433 46777778877653
No 200
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.92 E-value=0.0067 Score=77.67 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=50.5
Q ss_pred CccccccchHHHHHHHHHHHhc-----cCCCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCH--hhhh---
Q psy2654 1410 RLVITPLTDRCYITLSQSLHLN-----MGGAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDY--RSCG--- 1474 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~~-----~~~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~--~~l~--- 1474 (1949)
.||..+.....+. .+.++..+ .+.+++||+|+|||++++++|+.+ |..++.++|.+-++. ..+.
T Consensus 123 ~fv~g~~n~~a~~-~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~ 201 (450)
T PRK00149 123 NFVVGKSNRLAHA-AALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNT 201 (450)
T ss_pred ccccCCCcHHHHH-HHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCc
Confidence 3455554443433 33333322 235689999999999999999998 556888888653221 0010
Q ss_pred -hhcccccccCccccccccccccc
Q psy2654 1475 -NIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1475 -~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
.-+....+.-..+++||++.+..
T Consensus 202 ~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 202 MEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHHHHHHhcCCEEEEehhhhhcC
Confidence 01111222344677788777643
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0048 Score=75.93 Aligned_cols=122 Identities=21% Similarity=0.339 Sum_probs=76.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhcc-------------------CCCcccccCCCccCcccccccccCCCCCcc
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK-------------------KKPMYNDLEPKAVTNDELFGIINPSTREWK 1822 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~-------------------~~~~~~~i~p~~~~~~el~G~~~~~~~~w~ 1822 (1949)
...|+++++||||+||||++..||+.+.-.. ..+.+..+||......
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~-------------- 87 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI-------------- 87 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--------------
Confidence 3556899999999999999999999874211 0122233333322110
Q ss_pred cChHHHHHHHHhhcCC-----CCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChh
Q psy2654 1823 DGLFSCLIREQAQSTG-----DGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPA 1897 (1949)
Q Consensus 1823 dG~l~~~~r~~~~~~~-----~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa 1897 (1949)
| +....+|+...... ...+-|++|.. |..=.++-|.++ |++ ...|.+.++++-+.+...+-|-
T Consensus 88 ~-i~~~~vr~~~~~~~~~~~~~~~kviiidea-d~mt~~A~nall---k~l-------Eep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 88 D-IIVEQVRELAEFLSESPLEGGYKVVIIDEA-DKLTEDAANALL---KTL-------EEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred c-chHHHHHHHHHHhccCCCCCCceEEEeCcH-HHHhHHHHHHHH---HHh-------ccCCCCeEEEEEcCChhhccch
Confidence 1 45566666544322 34577888852 211123333332 110 1235678899999999999999
Q ss_pred hhccceEEEecC
Q psy2654 1898 TVSRAGILYINP 1909 (1949)
Q Consensus 1898 ~vsr~~~v~~~~ 1909 (1949)
..|||.+++|.+
T Consensus 156 I~SRc~~i~f~~ 167 (325)
T COG0470 156 IRSRCQRIRFKP 167 (325)
T ss_pred hhhcceeeecCC
Confidence 999999999987
No 202
>KOG0744|consensus
Probab=96.92 E-value=0.0012 Score=74.62 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.0
Q ss_pred HhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1761 FAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1761 l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+..++-|+|.||||+||||++|+||.-+
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhh
Confidence 4457889999999999999999999876
No 203
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0033 Score=78.72 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=74.7
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC-----------CCccc-----c-cCCCccCcccccccccCCCCCcccC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-----------KPMYN-----D-LEPKAVTNDELFGIINPSTREWKDG 1824 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~-----------~~~~~-----~-i~p~~~~~~el~G~~~~~~~~w~dG 1824 (1949)
...|++++.||+|+||||+.+++|+.+.-... .++-. . .+-.+.+..++-| .+..=.|-
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~----~~~~~id~ 111 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDA----ASNNSVDD 111 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecc----cccCCHHH
Confidence 34688999999999999999999998832110 00000 0 0001111111111 00000011
Q ss_pred hHHHHHHHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce
Q psy2654 1825 LFSCLIREQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG 1903 (1949)
Q Consensus 1825 ~l~~~~r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~ 1903 (1949)
+..+.......+ ....+-+|+|.. +-.--+..|.+|.- + | ..|+...+||-+++.....|+..|||.
T Consensus 112 -Ir~l~~~~~~~p~~~~~kvvIIdea-~~l~~~~~~~LLk~-----L---E--ep~~~t~~Il~t~~~~kl~~tl~sR~~ 179 (397)
T PRK14955 112 -IRLLRENVRYGPQKGRYRVYIIDEV-HMLSIAAFNAFLKT-----L---E--EPPPHAIFIFATTELHKIPATIASRCQ 179 (397)
T ss_pred -HHHHHHHHhhchhcCCeEEEEEeCh-hhCCHHHHHHHHHH-----H---h--cCCCCeEEEEEeCChHHhHHHHHHHHH
Confidence 111222221111 134477888862 11111334444311 1 0 245678899999999999999999999
Q ss_pred EEEecCCCCCchhhHHhhhc
Q psy2654 1904 ILYINPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1904 ~v~~~~~~~~w~~~~~~w~~ 1923 (1949)
++.+.+-. ..-+..|+.
T Consensus 180 ~v~f~~l~---~~ei~~~l~ 196 (397)
T PRK14955 180 RFNFKRIP---LEEIQQQLQ 196 (397)
T ss_pred HhhcCCCC---HHHHHHHHH
Confidence 99887653 233444544
No 204
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.90 E-value=0.003 Score=70.65 Aligned_cols=146 Identities=18% Similarity=0.289 Sum_probs=80.3
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhcc---CCCcc-----cccCCCccCcccccccccCCCCCcccChHHHHHHHHh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAK---KKPMY-----NDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQA 1834 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~---~~~~~-----~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~ 1834 (1949)
..|.++++||+|+|||++++.+++.+.... +..+. ..+.... ..++. .+++......-..+..++....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~--~~d~~-~~~~~~~~~~~~~i~~i~~~~~ 89 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGN--HPDLH-RLEPEGQSIKVDQVRELVEFLS 89 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC--CCcEE-EeccccCcCCHHHHHHHHHHHc
Confidence 447899999999999999999999874211 11110 0010000 01111 1112111111012222333333
Q ss_pred hcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCC
Q psy2654 1835 QST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLG 1913 (1949)
Q Consensus 1835 ~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~ 1913 (1949)
..+ ....+-||+|.. +..=-+..|.+|.- + |. .|++..+||-+.+...+.|+..|||-++.+.+-.
T Consensus 90 ~~~~~~~~kviiide~-~~l~~~~~~~Ll~~-----l---e~--~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~-- 156 (188)
T TIGR00678 90 RTPQESGRRVVIIEDA-ERMNEAAANALLKT-----L---EE--PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS-- 156 (188)
T ss_pred cCcccCCeEEEEEech-hhhCHHHHHHHHHH-----h---cC--CCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC--
Confidence 222 234578889963 21112334444421 1 21 3567889999999999999999999999988643
Q ss_pred chhhHHhhhccC
Q psy2654 1914 WNPYVLSWTDTR 1925 (1949)
Q Consensus 1914 w~~~~~~w~~~~ 1925 (1949)
..-+..|+...
T Consensus 157 -~~~~~~~l~~~ 167 (188)
T TIGR00678 157 -EEALLQWLIRQ 167 (188)
T ss_pred -HHHHHHHHHHc
Confidence 34567777665
No 205
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.90 E-value=0.0015 Score=71.34 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=72.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
+.|+.+||||+|||.+.++||+.. ++.+ -.+...+|.|.+..+. ++-+++...........|
T Consensus 152 knVLFyGppGTGKTm~Akalane~-----kvp~-----l~vkat~liGehVGdg--------ar~Ihely~rA~~~aPci 213 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEA-----KVPL-----LLVKATELIGEHVGDG--------ARRIHELYERARKAAPCI 213 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhccc-----CCce-----EEechHHHHHHHhhhH--------HHHHHHHHHHHHhcCCeE
Confidence 679999999999999999999644 1111 1233458999987654 666666655555555677
Q ss_pred EEcCCCCcc------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce
Q psy2654 1845 VMDGDIDPM------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG 1903 (1949)
Q Consensus 1845 v~Dg~~d~~------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~ 1903 (1949)
||=..+|+. +.|..|-+|-. =+.|.-..-+=.|-.|.+..-.-||.-||+-
T Consensus 214 vFiDE~DAiaLdRryQelRGDVsEiVNALLTe--------lDgi~eneGVvtIaaTN~p~~LD~aiRsRFE 276 (368)
T COG1223 214 VFIDELDAIALDRRYQELRGDVSEIVNALLTE--------LDGIKENEGVVTIAATNRPELLDPAIRSRFE 276 (368)
T ss_pred EEehhhhhhhhhhhHHHhcccHHHHHHHHHHh--------ccCcccCCceEEEeecCChhhcCHHHHhhhh
Confidence 764333332 56777877632 1122222334456667777778888888863
No 206
>KOG0989|consensus
Probab=96.89 E-value=0.0027 Score=71.88 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=49.9
Q ss_pred HHHHHHHh-ccCCC-CCCCCCCChhHHHHHHHHHhcc----eEEEE--eCCCCCCHhhhhhhcccc--------------
Q psy2654 1423 TLSQSLHL-NMGGA-PAGPAGTGKTETTKDLGKAIGI----MVYVF--NCSEQMDYRSCGNIYKGL-------------- 1480 (1949)
Q Consensus 1423 ~l~~al~~-~~~~~-l~G~~g~GKt~~v~~la~~lg~----~~~~~--n~~~~~~~~~l~~~~~g~-------------- 1480 (1949)
.+..|+.. ..|.+ ++||+|||||+++..+|++|.- |+-+. |.|+.........-.++.
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~ 126 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYP 126 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCC
Confidence 44445554 33333 7899999999999999999876 33333 555543332221111111
Q ss_pred cccCccccccccccccchhhHHHH
Q psy2654 1481 AQTGAWGCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1481 ~~~g~w~~~de~~~l~~~~ls~~~ 1504 (1949)
+.---.++|||++.++.++.+++.
T Consensus 127 ~~~fKiiIlDEcdsmtsdaq~aLr 150 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSDAQAALR 150 (346)
T ss_pred CCcceEEEEechhhhhHHHHHHHH
Confidence 111145788999988888888764
No 207
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.0047 Score=76.26 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=32.5
Q ss_pred eeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHHhhhch
Q psy2654 1586 VGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGF 1633 (1949)
Q Consensus 1586 ~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf 1633 (1949)
.-|++|.|| ..|++.++++|+.+.+..|+...+........|.
T Consensus 149 ~fIL~a~~~-----~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~ 191 (394)
T PRK07940 149 VWLLCAPSP-----EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV 191 (394)
T ss_pred eEEEEECCh-----HHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC
Confidence 456666664 4688999999999999999999887665544354
No 208
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.89 E-value=0.00029 Score=77.04 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=67.8
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCC-----cc-----------------cccCCCccCcccccccccCCCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP-----MY-----------------NDLEPKAVTNDELFGIINPSTRE 1820 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~-----~~-----------------~~i~p~~~~~~el~G~~~~~~~~ 1820 (1949)
..|+++++||||||||++.+.+...+..+.... .+ .+--|.+.|...|+|+- ..
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg----~~ 96 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGG----RP 96 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEG----GG
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCC----cC
Confidence 579999999999999999999987653221100 00 01112445556677652 24
Q ss_pred cccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe
Q psy2654 1821 WKDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI 1888 (1949)
Q Consensus 1821 w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~ 1888 (1949)
.+.|.++.+= +--+.+|. ..++..+|.|-..|++.++..--.|..+..|.++-++-.+
T Consensus 97 ~~PGeislAh----------~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~ 156 (206)
T PF01078_consen 97 PRPGEISLAH----------RGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAM 156 (206)
T ss_dssp EEE-CGGGGT----------TSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE
T ss_pred CCcCHHHHhc----------CCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEe
Confidence 5667665432 23578894 4599999999999999887666678888998887555443
No 209
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0078 Score=76.45 Aligned_cols=38 Identities=29% Similarity=0.283 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhc
Q psy2654 1419 RCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
.....+..++..+.-+ +++||+|+|||++++.||+.+.
T Consensus 21 ~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 21 SVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 3445667777777665 5889999999999999999984
No 210
>PRK06893 DNA replication initiation factor; Validated
Probab=96.86 E-value=0.0037 Score=72.01 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=40.9
Q ss_pred CCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccc
Q psy2654 1435 APAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
+++||+|||||++++++|+.+ |..+..++++.... ...+++.++. ...++++||++.+..
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~-~~dlLilDDi~~~~~ 105 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--FSPAVLENLE-QQDLVCLDDLQAVIG 105 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--hhHHHHhhcc-cCCEEEEeChhhhcC
Confidence 588999999999999999886 45777777643211 1113333333 447888999888753
No 211
>KOG2004|consensus
Probab=96.86 E-value=0.00084 Score=83.40 Aligned_cols=84 Identities=21% Similarity=0.334 Sum_probs=60.4
Q ss_pred hHHHHHHHHH-HH-hccCC--CCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhh------------hhhccccc
Q psy2654 1418 DRCYITLSQS-LH-LNMGG--APAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC------------GNIYKGLA 1481 (1949)
Q Consensus 1418 ~r~~~~l~~a-l~-~~~~~--~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l------------~~~~~g~~ 1481 (1949)
+|.+.-|+-+ |+ ...|. |++||||+|||++.+++|++|||.+++|.-.--+|.+.+ ++++.++-
T Consensus 421 eRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK 500 (906)
T KOG2004|consen 421 ERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLK 500 (906)
T ss_pred HHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHH
Confidence 5666555442 22 22333 367999999999999999999999999998877777665 34444444
Q ss_pred cc---CccccccccccccchhhH
Q psy2654 1482 QT---GAWGCFDEFNRISVEVLS 1501 (1949)
Q Consensus 1482 ~~---g~w~~~de~~~l~~~~ls 1501 (1949)
++ +-.+.+||++++....-.
T Consensus 501 ~v~t~NPliLiDEvDKlG~g~qG 523 (906)
T KOG2004|consen 501 KVKTENPLILIDEVDKLGSGHQG 523 (906)
T ss_pred hhCCCCceEEeehhhhhCCCCCC
Confidence 43 567899999999765443
No 212
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.0053 Score=74.15 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=84.6
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhcc---CCCc-----ccccCCCccCcccccccccCCCCCcccChHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK---KKPM-----YNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQ 1833 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~---~~~~-----~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~ 1833 (1949)
+..|+.++.||+|+|||++.+.+|+++.-.. ..++ ++.+...+ ..+++ .+.|+ +-...+=..-+|+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~--HPD~~-~i~~~--~~~~~i~id~iR~l 94 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGS--HPDNF-VLEPE--EADKTIKVDQVREL 94 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC--CCCEE-EEecc--CCCCCCCHHHHHHH
Confidence 4568999999999999999999999983211 1110 11111111 11111 11111 11122334445544
Q ss_pred hh----cC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1834 AQ----ST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1834 ~~----~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
.. .+ ....+.+|+|.. |..=.++-|++|- +| | ..|+++.+|+-+++...+-|...|||-.+.|.
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a-~~m~~~aaNaLLK---~L-----E--EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPA-EAMNRNAANALLK---SL-----E--EPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred HHHHhhccccCCCeEEEECCh-hhCCHHHHHHHHH---HH-----h--CCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 32 12 245577888753 3222355566652 11 1 13467889999999999999999999999997
Q ss_pred CCCCCchhhHHhhhccC
Q psy2654 1909 PQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1909 ~~~~~w~~~~~~w~~~~ 1925 (1949)
+-. ...+..||...
T Consensus 164 ~~~---~~~~~~~L~~~ 177 (328)
T PRK05707 164 LPS---NEESLQWLQQA 177 (328)
T ss_pred CcC---HHHHHHHHHHh
Confidence 643 35667787653
No 213
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.0068 Score=73.71 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHH
Q psy2654 1751 ILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLI 1830 (1949)
Q Consensus 1751 ~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~ 1830 (1949)
+..+.+....=...|..+++||+|+|||++++.+|+++.-... ...+-+...+... ++ ..+=..-+
T Consensus 13 ~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~-------~~~h~D~~~~~~~---~~----~~i~v~~i 78 (313)
T PRK05564 13 KNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ-------QREYVDIIEFKPI---NK----KSIGVDDI 78 (313)
T ss_pred HHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCC-------CCCCCCeEEeccc---cC----CCCCHHHH
Confidence 3333333333345688999999999999999999998721100 0001011111110 00 01112334
Q ss_pred HHHhh----cC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEE
Q psy2654 1831 REQAQ----ST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGIL 1905 (1949)
Q Consensus 1831 r~~~~----~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v 1905 (1949)
|+... .+ ....+.+|+|.. |..=.++-|.+|. +|. ..|+++.+|+-+++...+-|...|||-++
T Consensus 79 r~~~~~~~~~p~~~~~kv~iI~~a-d~m~~~a~naLLK-----~LE-----epp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 79 RNIIEEVNKKPYEGDKKVIIIYNS-EKMTEQAQNAFLK-----TIE-----EPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHHhcCcccCCceEEEEech-hhcCHHHHHHHHH-----Hhc-----CCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 54433 12 245688888873 2222244555552 111 25678889999999999999999999999
Q ss_pred EecCCCCCchhhHHhhhcc
Q psy2654 1906 YINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1906 ~~~~~~~~w~~~~~~w~~~ 1924 (1949)
+|.+-.- .-+..|+..
T Consensus 148 ~~~~~~~---~~~~~~l~~ 163 (313)
T PRK05564 148 KLNRLSK---EEIEKFISY 163 (313)
T ss_pred eCCCcCH---HHHHHHHHH
Confidence 9976322 345667754
No 214
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.85 E-value=0.0018 Score=77.76 Aligned_cols=129 Identities=20% Similarity=0.206 Sum_probs=82.2
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccC--CCccc-------------------------------c-cCCCccCcccc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKK--KPMYN-------------------------------D-LEPKAVTNDEL 1810 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~--~~~~~-------------------------------~-i~p~~~~~~el 1810 (1949)
.||+|.|++|+||||+++.++..+..... ...++ . --|-.++.+.|
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l 118 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRV 118 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhc
Confidence 48999999999999999999887743210 00000 0 01345567789
Q ss_pred cccccCCCCCcc-------cChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCC
Q psy2654 1811 FGIINPSTREWK-------DGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPS 1881 (1949)
Q Consensus 1811 ~G~~~~~~~~w~-------dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~ 1881 (1949)
||++|... .+. .|++.++ ..--+++|. .+++.....|-.+|++...-.-..|.....|..
T Consensus 119 ~G~iD~~~-al~~g~~~~~~GlL~~A----------~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~r 187 (350)
T CHL00081 119 CGTIDIEK-ALTEGVKAFEPGLLAKA----------NRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPAR 187 (350)
T ss_pred cCcccHHH-HhhcCcccccCCeeeec----------CCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCC
Confidence 99987543 233 4443321 224588885 457777777777787654433345766777776
Q ss_pred ceEEEEeCCCCC--CChhhhccceEE
Q psy2654 1882 MRLLFEISNLRT--ATPATVSRAGIL 1905 (1949)
Q Consensus 1882 ~~~ifE~~~l~~--asPa~vsr~~~v 1905 (1949)
+.++. +.|+.. ..|+..-|.+|.
T Consensus 188 fivia-T~np~eg~l~~~LldRf~l~ 212 (350)
T CHL00081 188 FVLVG-SGNPEEGELRPQLLDRFGMH 212 (350)
T ss_pred EEEEe-ccCcccCCCCHHHHHHhCce
Confidence 64444 666543 899999999964
No 215
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.84 E-value=0.019 Score=73.45 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=41.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHhhhhhh-------cccccccCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYRSCGNI-------YKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~~l~~~-------~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
+.+|+|++|+|||.+++++|+.+ |..++.++|.+-++ .....+ |..-...-..+++|+++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGDSFRRRYREMDILLVDDIQFLED 391 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHHHHHHHhhcCCEEEEehhccccC
Confidence 35689999999999999999987 56788888755221 011111 111122345688888887754
No 216
>PRK08727 hypothetical protein; Validated
Probab=96.84 E-value=0.0044 Score=71.56 Aligned_cols=62 Identities=23% Similarity=0.197 Sum_probs=40.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHH---hcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKA---IGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~---lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
+.+++||+|||||+++++++.. -|..+..+++.+... .+...+.+. .+-..+++||++.++.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~l-~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--RLRDALEAL-EGRSLVALDGLESIAG 107 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--hHHHHHHHH-hcCCEEEEeCcccccC
Confidence 4679999999999999999665 355667777654221 222333333 2335688898887764
No 217
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.83 E-value=0.0025 Score=84.37 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=42.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccc------cccCccccccccccccch
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGL------AQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~------~~~g~w~~~de~~~l~~~ 1498 (1949)
.+++||+|||||++++.+|+.++.+++.+||+.. ..+.+...+..+ ...+..+++||+++++..
T Consensus 55 lLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 55 LILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 4588999999999999999999999999998742 222222222211 112345666666666543
No 218
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0015 Score=84.83 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=57.7
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCccccccccccccchh
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~~~~ 1499 (1949)
+....|.+++||+|||||.+++++|..+|.+++.+..++-++ .+.+.++|.-+. ...+.+.|||++.+-+..
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r 351 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGR 351 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccC
Confidence 445568889999999999999999999999999999985333 455666676665 668999999999875543
No 219
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.0071 Score=78.25 Aligned_cols=128 Identities=12% Similarity=0.169 Sum_probs=75.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCC---Ccccc-----cCC-CccCcccccccccCCCCCcccChHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK---PMYND-----LEP-KAVTNDELFGIINPSTREWKDGLFSCLIREQ 1833 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~---~~~~~-----i~p-~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~ 1833 (1949)
..|..+++||+|+||||+++.+|+++.-..+. ++-.+ ++. .+.+..++-| .+ ..| ..-+|+.
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idg----as---~~~--vddIr~l 107 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDG----AS---NTS--VQDVRQI 107 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecC----cc---cCC--HHHHHHH
Confidence 45789999999999999999999998422111 11110 111 1111111211 11 112 2233333
Q ss_pred h----hcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1834 A----QST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1834 ~----~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
. ..+ ....+-+|+|.. +..--+..|.+|.. -| ..|+++.+||-++++..+.|+..|||..+.+.
T Consensus 108 ~e~~~~~p~~~~~KVvIIDEa-~~Ls~~a~naLLK~--------LE--epp~~~vfI~~tte~~kL~~tI~SRc~~~~f~ 176 (563)
T PRK06647 108 KEEIMFPPASSRYRVYIIDEV-HMLSNSAFNALLKT--------IE--EPPPYIVFIFATTEVHKLPATIKSRCQHFNFR 176 (563)
T ss_pred HHHHHhchhcCCCEEEEEECh-hhcCHHHHHHHHHh--------hc--cCCCCEEEEEecCChHHhHHHHHHhceEEEec
Confidence 2 111 245578888862 22222445555422 22 25778999999999999999999999999988
Q ss_pred CC
Q psy2654 1909 PQ 1910 (1949)
Q Consensus 1909 ~~ 1910 (1949)
+-
T Consensus 177 ~l 178 (563)
T PRK06647 177 LL 178 (563)
T ss_pred CC
Confidence 63
No 220
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.81 E-value=0.0085 Score=77.57 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=63.9
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHH---hcceEEEEeCCCCCCHhhhhhhcccc----------
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKA---IGIMVYVFNCSEQMDYRSCGNIYKGL---------- 1480 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~---lg~~~~~~n~~~~~~~~~l~~~~~g~---------- 1480 (1949)
+|...+....+..+.....+.++.|++||||+.+++.+... .+.|++.+||..-.+ ..+...+.|.
T Consensus 149 S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~ 227 (457)
T PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQT 227 (457)
T ss_pred cHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCC
Confidence 45666777777778888888999999999999999998665 457999999987533 3333333221
Q ss_pred -------cccCccccccccccccchhhHHHHH
Q psy2654 1481 -------AQTGAWGCFDEFNRISVEVLSVVAV 1505 (1949)
Q Consensus 1481 -------~~~g~w~~~de~~~l~~~~ls~~~~ 1505 (1949)
...|.-+++||++.++..+...+..
T Consensus 228 ~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~ 259 (457)
T PRK11361 228 LRQGLFERANEGTLLLDEIGEMPLVLQAKLLR 259 (457)
T ss_pred CCCCceEECCCCEEEEechhhCCHHHHHHHHH
Confidence 1123456777777777776665543
No 221
>KOG0729|consensus
Probab=96.81 E-value=0.0029 Score=69.04 Aligned_cols=105 Identities=19% Similarity=0.289 Sum_probs=62.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
..||+++||||+|||.|.++.|+.. ..++.++- -.||.-.|.... .+++|+...-.+.+.-.
T Consensus 211 pkgvllygppgtgktl~aravanrt-----dacfirvi-----gselvqkyvgeg--------armvrelf~martkkac 272 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI-----GSELVQKYVGEG--------ARMVRELFEMARTKKAC 272 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh-----hHHHHHHHhhhh--------HHHHHHHHHHhcccceE
Confidence 4699999999999999999988643 22222211 134444454333 67888876655555445
Q ss_pred EEE-cCCC--------------Ccc----chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1844 MVM-DGDI--------------DPM----WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1844 iv~-Dg~~--------------d~~----w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
||| | .+ |.+ -+|-+|.+ | -.-..-|.+++|.|.-....-||.+
T Consensus 273 iiffd-eidaiggarfddg~ggdnevqrtmleli~ql-d-----------gfdprgnikvlmatnrpdtldpall 334 (435)
T KOG0729|consen 273 IIFFD-EIDAIGGARFDDGAGGDNEVQRTMLELINQL-D-----------GFDPRGNIKVLMATNRPDTLDPALL 334 (435)
T ss_pred EEEee-ccccccCccccCCCCCcHHHHHHHHHHHHhc-c-----------CCCCCCCeEEEeecCCCCCcCHhhc
Confidence 554 5 22 222 33333433 1 1233457788888877777777764
No 222
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.81 E-value=0.0064 Score=69.30 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=51.9
Q ss_pred CccccccchHHHHHHHHHHHhccC-----CCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCH-------hh
Q psy2654 1410 RLVITPLTDRCYITLSQSLHLNMG-----GAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDY-------RS 1472 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~~~~-----~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~-------~~ 1472 (1949)
.+|..+....++ ..+.++..+.+ ..++||+|+|||++++++++.+ |..++.+++.+-++. ..
T Consensus 9 nfv~g~~N~~a~-~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~ 87 (219)
T PF00308_consen 9 NFVVGESNELAY-AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGE 87 (219)
T ss_dssp CS--TTTTHHHH-HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTS
T ss_pred cCCcCCcHHHHH-HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHccc
Confidence 345554433333 44455554433 3589999999999999999875 456777776542110 11
Q ss_pred hhhhcccccccCccccccccccccch
Q psy2654 1473 CGNIYKGLAQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1473 l~~~~~g~~~~g~w~~~de~~~l~~~ 1498 (1949)
+..+. .-...-..+|+|+++.+...
T Consensus 88 ~~~~~-~~~~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 88 IEEFK-DRLRSADLLIIDDIQFLAGK 112 (219)
T ss_dssp HHHHH-HHHCTSSEEEEETGGGGTTH
T ss_pred chhhh-hhhhcCCEEEEecchhhcCc
Confidence 11222 22346678999999998765
No 223
>KOG0728|consensus
Probab=96.81 E-value=0.0014 Score=70.73 Aligned_cols=122 Identities=18% Similarity=0.259 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcC--cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHH
Q psy2654 1752 LKVVQLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCL 1829 (1949)
Q Consensus 1752 ~k~~~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~ 1829 (1949)
.|..+||+++... .||+|+||||+|||.++++.|-.. . +..--++..||.-.|.... ++.
T Consensus 167 vKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~-----c~firvsgselvqk~igeg--------srm 228 (404)
T KOG0728|consen 167 VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----D-----CTFIRVSGSELVQKYIGEG--------SRM 228 (404)
T ss_pred ccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----c-----eEEEEechHHHHHHHhhhh--------HHH
Confidence 3556789988875 589999999999999999988533 1 1112234445554443333 677
Q ss_pred HHHHhhcCC-CCCcEEEEcC-----C--------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCC
Q psy2654 1830 IREQAQSTG-DGPKWMVMDG-----D--------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTAT 1895 (1949)
Q Consensus 1830 ~r~~~~~~~-~~~~Wiv~Dg-----~--------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~as 1895 (1949)
+|+..--.+ ..+..|..|. . -|+++--.|-.+|.. =+-...+.|.++|+.|.-+.-.-
T Consensus 229 vrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq--------ldgfeatknikvimatnridild 300 (404)
T KOG0728|consen 229 VRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ--------LDGFEATKNIKVIMATNRIDILD 300 (404)
T ss_pred HHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh--------ccccccccceEEEEecccccccc
Confidence 776543222 2234455551 1 133332222222211 12346678899999999999999
Q ss_pred hhhh
Q psy2654 1896 PATV 1899 (1949)
Q Consensus 1896 Pa~v 1899 (1949)
||.+
T Consensus 301 ~all 304 (404)
T KOG0728|consen 301 PALL 304 (404)
T ss_pred Hhhc
Confidence 9875
No 224
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.80 E-value=0.0033 Score=82.69 Aligned_cols=139 Identities=17% Similarity=0.326 Sum_probs=78.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC-----CCcccccCCCccCc------ccccccccCCCCCcccChHHHH---
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-----KPMYNDLEPKAVTN------DELFGIINPSTREWKDGLFSCL--- 1829 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~-----~~~~~~i~p~~~~~------~el~G~~~~~~~~w~dG~l~~~--- 1829 (1949)
..+++|+|||||||||++++++.......+ ...+..++-..+.. ..++|... +.....+
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~-------~~~~~~a~~~ 247 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVH-------DPIYQGARRD 247 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCcc-------HHHHHHHHHH
Confidence 457999999999999999999876533221 11223333222211 23555431 1111111
Q ss_pred HHHHhhc-------CCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccC-----Ccee----------ecCCCceEE
Q psy2654 1830 IREQAQS-------TGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLAS-----NERI----------ALTPSMRLL 1885 (1949)
Q Consensus 1830 ~r~~~~~-------~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~-----ge~i----------~~~~~~~~i 1885 (1949)
+...... .....--+++|. .+|+...+.|-.+|++.+.+...+ ++.+ ..|.++.++
T Consensus 248 l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI 327 (615)
T TIGR02903 248 LAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLI 327 (615)
T ss_pred HHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEE
Confidence 1110000 001124688895 458888888999998766543221 1111 123344555
Q ss_pred EEe-CCCCCCChhhhccceEEEecC
Q psy2654 1886 FEI-SNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1886 fE~-~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
.-| .+...+.|+..|||..+++.+
T Consensus 328 ~aTt~~~~~l~~aLrSR~~~i~~~p 352 (615)
T TIGR02903 328 GATTRDPEEINPALRSRCAEVFFEP 352 (615)
T ss_pred EeccccccccCHHHHhceeEEEeCC
Confidence 544 467888999999999999887
No 225
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.80 E-value=0.0061 Score=82.34 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=23.2
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
++.||+|+||||+++.||+.+|.+++
T Consensus 5 ~I~G~~GsGKST~ak~la~~l~~~~~ 30 (712)
T PRK09518 5 AIDGPAGVGKSSVSRALAQYLGYAYL 30 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 47899999999999999999996654
No 226
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0058 Score=78.87 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1419 RCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.....+..++..+.. -+++||+|+|||++++.+|+.++.
T Consensus 23 ~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 23 HVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334456666665443 358899999999999999999874
No 227
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.78 E-value=0.0014 Score=85.73 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=91.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCC----CC--CcccChHHHHHHHHhhcCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPS----TR--EWKDGLFSCLIREQAQSTG 1838 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~----~~--~w~dG~l~~~~r~~~~~~~ 1838 (1949)
-+|+|.|+||+|||++.+.+++.+.. ...++.+.+ +.+...|+|.++.. ++ .|+.|+|..+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~---~~pfv~i~~-~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A--------- 83 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPP---IMPFVELPL-GVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA--------- 83 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCc---CCCeEecCc-ccchhhcccchhhhhhhhcCcccCCCCCeeeC---------
Confidence 37999999999999999999987632 123455554 56778899997522 12 3667776532
Q ss_pred CCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC----CCChhhhccceEE
Q psy2654 1839 DGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR----TATPATVSRAGIL 1905 (1949)
Q Consensus 1839 ~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~----~asPa~vsr~~~v 1905 (1949)
..--+++|. .+++.....|-.+|+++.+-.-..|.....|.++++|- ++|.. ...|+.+.|+++.
T Consensus 84 -~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIA-t~np~e~~g~L~~~LldRf~l~ 154 (589)
T TIGR02031 84 -PRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIA-TYDPAEGGGGLPDHLLDRLALH 154 (589)
T ss_pred -CCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEE-ecCCccccCCCCHHHHHhccCe
Confidence 113477785 45888889999999887765556688889999998885 66653 5889999999983
No 228
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.78 E-value=0.0037 Score=70.22 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=48.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEEE
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWMV 1845 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv 1845 (1949)
.|+++|||||||||+++.|+..+....+...+..-+|.....+...+.+....-++....+..+++.+... .+.+|+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~---~pd~ii 79 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ---DPDVIL 79 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC---CcCEEE
Confidence 47999999999999999988877433221111112232221111111111111122233466666665432 357999
Q ss_pred EcCCCCccchhh
Q psy2654 1846 MDGDIDPMWIES 1857 (1949)
Q Consensus 1846 ~Dg~~d~~w~e~ 1857 (1949)
+|.+-|++-++.
T Consensus 80 ~gEird~e~~~~ 91 (198)
T cd01131 80 VGEMRDLETIRL 91 (198)
T ss_pred EcCCCCHHHHHH
Confidence 999887764443
No 229
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.76 E-value=0.0031 Score=76.28 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=62.1
Q ss_pred ccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh----cceEEEEeCCCCCCHhh---h----hhhcccc---
Q psy2654 1415 PLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI----GIMVYVFNCSEQMDYRS---C----GNIYKGL--- 1480 (1949)
Q Consensus 1415 ~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l----g~~~~~~n~~~~~~~~~---l----~~~~~g~--- 1480 (1949)
|...+...++-..--.+.++++.|++||||+-.++.+...- +.|++.|||..-...-. | .+.|.|+
T Consensus 85 ~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~ 164 (403)
T COG1221 85 PSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGG 164 (403)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCC
Confidence 56677777777766678889999999999999988876554 44999999977433211 2 2335553
Q ss_pred ------cccCccccccccccccchhhHHHH
Q psy2654 1481 ------AQTGAWGCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1481 ------~~~g~w~~~de~~~l~~~~ls~~~ 1504 (1949)
...|.-+.+||+.++|++....+-
T Consensus 165 k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl 194 (403)
T COG1221 165 KAGLFEQANGGTLFLDEIHRLPPEGQEKLL 194 (403)
T ss_pred cCchheecCCCEEehhhhhhCCHhHHHHHH
Confidence 223555677777777777666553
No 230
>PRK15115 response regulator GlrR; Provisional
Probab=96.75 E-value=0.0041 Score=80.08 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=62.6
Q ss_pred ccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccc-----------
Q psy2654 1415 PLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGL----------- 1480 (1949)
Q Consensus 1415 ~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~----------- 1480 (1949)
|...+.+..+..+.....++++.|++||||+.+++.+.+.. +.|++.+||..-. ...+...+.|.
T Consensus 141 ~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~-~~~~~~~lfg~~~~~~~~~~~~ 219 (444)
T PRK15115 141 PLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALP-EQLLESELFGHARGAFTGAVSN 219 (444)
T ss_pred HHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCC-HHHHHHHhcCCCcCCCCCCccC
Confidence 44556666666666667778899999999999999998875 4799999999753 23333333222
Q ss_pred ------cccCccccccccccccchhhHHHHHH
Q psy2654 1481 ------AQTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1481 ------~~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
...|.-+++||++.++.+....+...
T Consensus 220 ~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~ 251 (444)
T PRK15115 220 REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRV 251 (444)
T ss_pred CCCcEEECCCCEEEEEccccCCHHHHHHHHHH
Confidence 11244578888888888776665433
No 231
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.014 Score=71.20 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCcccccCCC----------ccCccccc--
Q psy2654 1747 EDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPMYNDLEPK----------AVTNDELF-- 1811 (1949)
Q Consensus 1747 ~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~~~~i~p~----------~~~~~el~-- 1811 (1949)
++.....+...+..=...|.+++.||+|+||||+.+.+|+.+..... .+. ...+|- +-+..+++
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~-~~~~~~~~c~~c~~i~~~~hPdl~~l 106 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE-TLADPDPASPVWRQIAQGAHPNLLHI 106 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc-ccCCCCCCCHHHHHHHcCCCCCEEEe
Confidence 33444444555555556679999999999999999999998743110 010 001110 00111221
Q ss_pred -ccccCCCCCcccChHHHHHHHHhhc-----CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCce
Q psy2654 1812 -GIINPSTREWKDGLFSCLIREQAQS-----TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMR 1883 (1949)
Q Consensus 1812 -G~~~~~~~~w~dG~l~~~~r~~~~~-----~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~ 1883 (1949)
...++.++....++-+.-+|+.... .....+.||+|.. ++..=.+.|-..|+. .|++..
T Consensus 107 ~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE-------------pp~~~~ 173 (351)
T PRK09112 107 TRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE-------------PPARAL 173 (351)
T ss_pred ecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-------------CCCCce
Confidence 1222222223344555566654322 1234578888853 333323333333322 345667
Q ss_pred EEEEeCCCCCCChhhhccceEEEecCCCCCchhhHHhhhcc
Q psy2654 1884 LLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1884 ~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~~ 1924 (1949)
+|+-+.+.....|...|||-.+.+.+-.- .-+..||..
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~---~~~~~~L~~ 211 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDD---DELKKALSH 211 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCH---HHHHHHHHH
Confidence 77778888899999999999999986432 345666654
No 232
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.73 E-value=0.002 Score=81.78 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=88.0
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCC-------------------c--ccccCC-CccCcccccccccCC
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP-------------------M--YNDLEP-KAVTNDELFGIINPS 1817 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~-------------------~--~~~i~p-~~~~~~el~G~~~~~ 1817 (1949)
+....+.++|+|||||||||+.+.++..+....+.. . -....| .+.+...++|.-
T Consensus 207 aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg--- 283 (499)
T TIGR00368 207 AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG--- 283 (499)
T ss_pred hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc---
Confidence 345678999999999999999999987542111100 0 000122 233445566631
Q ss_pred CCCcccChHHHHHHHHhhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC----
Q psy2654 1818 TREWKDGLFSCLIREQAQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL---- 1891 (1949)
Q Consensus 1818 ~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l---- 1891 (1949)
...+.|.++.+ ..-.+++|.. +++..++.|...|++..+-.-..|..+..|.++++|..+...
T Consensus 284 -~~~~pG~i~lA----------~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~ 352 (499)
T TIGR00368 284 -PIPLPGEISLA----------HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGH 352 (499)
T ss_pred -cccchhhhhcc----------CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCc
Confidence 12456655422 1145777854 578899999999998765444556678899999999988742
Q ss_pred -------------------CCCChhhhccceEEE
Q psy2654 1892 -------------------RTATPATVSRAGILY 1906 (1949)
Q Consensus 1892 -------------------~~asPa~vsr~~~v~ 1906 (1949)
..+|+.++.|+.+..
T Consensus 353 ~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~ 386 (499)
T TIGR00368 353 YGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSV 386 (499)
T ss_pred CCCCcccccCCHHHHHHHhhhccHhHHhhCCEEE
Confidence 369999999999875
No 233
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.73 E-value=0.0041 Score=76.87 Aligned_cols=153 Identities=20% Similarity=0.261 Sum_probs=84.0
Q ss_pred HHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhh
Q psy2654 1756 QLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQ 1835 (1949)
Q Consensus 1756 ~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~ 1835 (1949)
.+..++..+..|+|.||||+|||++++.|+.+....+ .... ++-.-.+..++||..+... .=.+|-+.+. +.+
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~--~~~~fttp~DLfG~l~i~~-~~~~g~f~r~-~~G-- 103 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEY--LMTRFSTPEEVFGPLSIQA-LKDEGRYQRL-TSG-- 103 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccC-ccee--eeeeecCcHHhcCcHHHhh-hhhcCchhhh-cCC--
Confidence 4556677899999999999999999999999874321 1111 1111113458999641100 0002222210 011
Q ss_pred cCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCC-CCC---CChhhhccceEEEecC
Q psy2654 1836 STGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISN-LRT---ATPATVSRAGILYINP 1909 (1949)
Q Consensus 1836 ~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~-l~~---asPa~vsr~~~v~~~~ 1909 (1949)
.-....-+++|. ..++.....|-.+|.+.. .+ +.|+..++|.. +++-.++ |-. .=+|..-|. ++.+.-
T Consensus 104 -~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~-~t-~g~~~~~lp~r--fiv~ATN~LPE~g~~leAL~DRF-liri~v 177 (498)
T PRK13531 104 -YLPEAEIVFLDEIWKAGPAILNTLLTAINERR-FR-NGAHEEKIPMR--LLVTASNELPEADSSLEALYDRM-LIRLWL 177 (498)
T ss_pred -ccccccEEeecccccCCHHHHHHHHHHHHhCe-Ee-cCCeEEeCCCc--EEEEECCCCcccCCchHHhHhhE-EEEEEC
Confidence 000114578884 456667777777776644 34 36777777764 5444443 321 113788899 555443
Q ss_pred CCCC----chhhHHhh
Q psy2654 1910 QDLG----WNPYVLSW 1921 (1949)
Q Consensus 1910 ~~~~----w~~~~~~w 1921 (1949)
.-+. +...+.++
T Consensus 178 p~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 178 DKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCchHHHHHHHHcc
Confidence 3333 34555554
No 234
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0087 Score=78.39 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=76.6
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccC----CCc-----ccccC-CCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK----KPM-----YNDLE-PKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~----~~~-----~~~i~-p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
..|..+++||+|+||||+.+.+|+.+.-... ..+ +..++ -.+.+..++ ++.+..=.| -+-.++.+
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l----d~~~~~~vd-~Ir~li~~ 112 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL----DAASNNSVD-DIRNLIEQ 112 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe----cccccCCHH-HHHHHHHH
Confidence 4578999999999999999999998731100 000 00000 011111111 111000000 12223333
Q ss_pred HhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1833 QAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1833 ~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
....+ ....+.+|+|+. +..=.+..|.+|. . |- ..|++..+||-+++...+.|+..|||.++.|.+-.
T Consensus 113 ~~~~P~~~~~KVvIIdea-~~Ls~~a~naLLK---~--LE-----epp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls 181 (614)
T PRK14971 113 VRIPPQIGKYKIYIIDEV-HMLSQAAFNAFLK---T--LE-----EPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQ 181 (614)
T ss_pred HhhCcccCCcEEEEEECc-ccCCHHHHHHHHH---H--Hh-----CCCCCeEEEEEeCCchhchHHHHhhhheeecCCCC
Confidence 22222 235689999973 1111234444441 0 00 13567889999999999999999999999998643
Q ss_pred CCchhhHHhhhc
Q psy2654 1912 LGWNPYVLSWTD 1923 (1949)
Q Consensus 1912 ~~w~~~~~~w~~ 1923 (1949)
- .-+..|+.
T Consensus 182 ~---~ei~~~L~ 190 (614)
T PRK14971 182 V---ADIVNHLQ 190 (614)
T ss_pred H---HHHHHHHH
Confidence 2 23345553
No 235
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.71 E-value=0.0095 Score=77.51 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=28.0
Q ss_pred HHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1421 YITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1421 ~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
...+-.++..+..+ +++||.|||||++++.+|+.++.
T Consensus 25 ~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 25 TKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34555666655433 46899999999999999999864
No 236
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.0097 Score=72.49 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc---CCC-----cccccCCCccCcccccccccCCCCCccc
Q psy2654 1752 LKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK---KKP-----MYNDLEPKAVTNDELFGIINPSTREWKD 1823 (1949)
Q Consensus 1752 ~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~---~~~-----~~~~i~p~~~~~~el~G~~~~~~~~w~d 1823 (1949)
..+.+....=...|..+++||+|+||+++++.+|+++.-.. ..+ .+..+....+ .++. .+.+++.
T Consensus 16 ~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~h--pD~~-~i~~~~~---- 88 (329)
T PRK08058 16 KMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNH--PDVH-LVAPDGQ---- 88 (329)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCC--CCEE-Eeccccc----
Confidence 33333444334568899999999999999999999873211 110 0111111111 1111 1111111
Q ss_pred ChHHHHHHHHhh----c-CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhh
Q psy2654 1824 GLFSCLIREQAQ----S-TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPAT 1898 (1949)
Q Consensus 1824 G~l~~~~r~~~~----~-~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~ 1898 (1949)
.+-..-+|+... . .....+.+|+|+. |..=.++-|.+|.- | | ..|+++.+||-+++...+-|+.
T Consensus 89 ~i~id~ir~l~~~~~~~~~~~~~kvviI~~a-~~~~~~a~NaLLK~-----L---E--EPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 89 SIKKDQIRYLKEEFSKSGVESNKKVYIIEHA-DKMTASAANSLLKF-----L---E--EPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred cCCHHHHHHHHHHHhhCCcccCceEEEeehH-hhhCHHHHHHHHHH-----h---c--CCCCCceEEEEeCChHhCcHHH
Confidence 122334444332 1 1235689999973 22222344555421 0 1 2567888999999999999999
Q ss_pred hccceEEEecCCCCCchhhHHhhhcc
Q psy2654 1899 VSRAGILYINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1899 vsr~~~v~~~~~~~~w~~~~~~w~~~ 1924 (1949)
.|||-.|++.+-.- .-+..|+..
T Consensus 158 rSRc~~i~~~~~~~---~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPP---ESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCH---HHHHHHHHH
Confidence 99999999986532 234556644
No 237
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.0099 Score=77.87 Aligned_cols=41 Identities=32% Similarity=0.407 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1418 DRCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
+.....|..++..+..+ +++||+|+|||++++.+|+.++..
T Consensus 22 ~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 22 EAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 44556677777766543 689999999999999999999864
No 238
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0048 Score=79.24 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcc--C-CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1421 YITLSQSLHLNM--G-GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1421 ~~~l~~al~~~~--~-~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
...|..++..+. . -+++||+|+|||++++.||+.++.
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 445556666543 2 336899999999999999999974
No 239
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.69 E-value=0.003 Score=79.70 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccc-cccCccccccccccccch
Q psy2654 1420 CYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGL-AQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~-~~~g~w~~~de~~~l~~~ 1498 (1949)
....+..+...+...+++||+|+|||++++.++..+-.. ...+.++...+..+ .|. ...+.| . .-==+-|+.
T Consensus 199 ~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~----~g~e~le~~~i~s~-~g~~~~~~~~-~-~rPfr~ph~ 271 (506)
T PRK09862 199 GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDL----SNEEALESAAILSL-VNAESVQKQW-R-QRPFRSPHH 271 (506)
T ss_pred HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCC----CCcEEEecchhhhh-hccccccCCc-C-CCCccCCCc
Confidence 334444555556667799999999999999998877421 11111111111111 111 111222 0 011122333
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcccccee--c
Q psy2654 1499 VLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNF--M 1576 (1949)
Q Consensus 1499 ~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~--~ 1576 (1949)
..|..+ +..+... ..+..-..-+|.-.++||+|+++..+++.+.+.++. +.+.+ .
T Consensus 272 ~~s~~~---------l~GGg~~-----~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~---------g~v~I~r~ 328 (506)
T PRK09862 272 SASLTA---------MVGGGAI-----PGPGEISLAHNGVLFLDELPEFERRTLDALREPIES---------GQIHLSRT 328 (506)
T ss_pred cchHHH---------HhCCCce-----ehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHc---------CcEEEecC
Confidence 333221 0000000 000111233455667799999998888766655432 23322 2
Q ss_pred cceEEEecCeeEEEEeCC---CCCCC--------------CCChhhHhhcccc-cccccCCHH
Q psy2654 1577 GENIKLVTTVGMFITMNP---GYAGR--------------AELPENLKALFRP-CAMVVPDFA 1621 (1949)
Q Consensus 1577 ~~~i~~~~~~~~f~tmnp---~~~g~--------------~~LP~~lk~~fr~-v~~~~pD~~ 1621 (1949)
|..+....+|++.+|||| ||.+. ..||..|..+|-- |.|..|+..
T Consensus 329 g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 455667889999999999 44442 3577788888875 566667665
No 240
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.69 E-value=0.0011 Score=71.90 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=55.3
Q ss_pred CCCCCCCCcchhHHHHHHhhcc----eEEEeeCCccch----hhhccccc------hhhcccCccccccccccchh----
Q psy2654 1049 PAGPAGTGKTETTKDLGKAIGI----MVYVFNCSEQMD----YRSCGNIY------KGLAQTGAWGCFDEFNRISV---- 1110 (1949)
Q Consensus 1049 ~~gp~gtGKt~~~~~la~~lg~----~~~~~~~~~~~~----~~~~~~~~------~g~~~~g~w~~fde~~~l~~---- 1110 (1949)
+.||+|+|||++++.||+.++. +++.++|++-.+ ...+.+.+ .|....| -++||||+.+..
T Consensus 8 l~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g-VVllDEidKa~~~~~~ 86 (171)
T PF07724_consen 8 LAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG-VVLLDEIDKAHPSNSG 86 (171)
T ss_dssp EESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT-EEEEETGGGCSHTTTT
T ss_pred EECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchh-hhhhHHHhhccccccc
Confidence 5799999999999999999995 899999999888 44444432 2444444 789999999998
Q ss_pred -------hHHHHHHHHHH
Q psy2654 1111 -------EVLSVVAVQVK 1121 (1949)
Q Consensus 1111 -------~~Ls~i~~~l~ 1121 (1949)
.|...+.+.+.
T Consensus 87 ~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 87 GADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhc
Confidence 77665554443
No 241
>KOG0738|consensus
Probab=96.68 E-value=0.0018 Score=75.11 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=49.8
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC-----Hhhhhhhccccc--ccCccccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD-----YRSCGNIYKGLA--QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~-----~~~l~~~~~g~~--~~g~w~~~de~~~l~~ 1497 (1949)
-=.|++++||+|||||-++|++|.-+|.-++.+..+.-++ .+.|.|++--++ -.-+-+.+||++.|+.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHh
Confidence 3478899999999999999999999997666665554322 445666665443 3567788888887654
No 242
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.67 E-value=0.048 Score=68.89 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=37.1
Q ss_pred CccccccchHHHHHHHHHHHh---------ccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCC
Q psy2654 1410 RLVITPLTDRCYITLSQSLHL---------NMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCS 1465 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~---------~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~ 1465 (1949)
.||..+..... ...+.++.. ..|.+++||+|+|||++++++|+.+ |..++.+++.
T Consensus 112 nFv~g~~N~~a-~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 112 NFLVTPENDLP-HRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceeeCCcHHHH-HHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 45555544433 344444432 1346799999999999999999876 6777777654
No 243
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.012 Score=70.72 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc--C-----------CCcccccCCCccCccccccccc
Q psy2654 1749 SFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK--K-----------KPMYNDLEPKAVTNDELFGIIN 1815 (1949)
Q Consensus 1749 ~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~--~-----------~~~~~~i~p~~~~~~el~G~~~ 1815 (1949)
..+..+.+....=...|+.+++||+|+||+++...+|+.+.-.. + ++-++.+.|..... |...
T Consensus 11 ~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~----g~~~ 86 (314)
T PRK07399 11 LAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ----GKLI 86 (314)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc----cccc
Confidence 33344444444444568999999999999999999999873221 0 11111122211100 2110
Q ss_pred CCC--------CCcccChHHHHHHHHh----hcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCc
Q psy2654 1816 PST--------REWKDGLFSCLIREQA----QST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSM 1882 (1949)
Q Consensus 1816 ~~~--------~~w~dG~l~~~~r~~~----~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~ 1882 (1949)
... ......+-..-+|+.. ..+ ....+.+|+|+. |..=.++-|.+|.- +.=||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a-e~m~~~aaNaLLK~-----------LEEPp~~ 154 (314)
T PRK07399 87 TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA-ETMNEAAANALLKT-----------LEEPGNG 154 (314)
T ss_pred chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEch-hhcCHHHHHHHHHH-----------HhCCCCC
Confidence 000 0000112223344432 222 245689999974 11111233444411 1124577
Q ss_pred eEEEEeCCCCCCChhhhccceEEEecCCCCCchhhHHhhhccC
Q psy2654 1883 RLLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1883 ~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~~~ 1925 (1949)
.+|+-+++....-|...|||-.+.|.+-. ...+..||...
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~---~~~~~~~L~~~ 194 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLS---DEQLEQVLKRL 194 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCC---HHHHHHHHHHh
Confidence 89999999999999999999999998643 24556676654
No 244
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0079 Score=78.64 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....+..++..+... +++||+|+|||++++.||+.++.
T Consensus 24 v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 24 VSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 345566666665433 58899999999999999999764
No 245
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.64 E-value=0.0097 Score=74.18 Aligned_cols=127 Identities=13% Similarity=0.231 Sum_probs=70.0
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCccc-----cc-CCCccCcccccccccCCCCCcccC--hHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPMYN-----DL-EPKAVTNDELFGIINPSTREWKDG--LFSCLIR 1831 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~~~-----~i-~p~~~~~~el~G~~~~~~~~w~dG--~l~~~~r 1831 (1949)
..|+++++||||+|||++.+.+++.+..... .++.. .+ ...+.+.- .+++.. ..+ -+..++.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~----~~~~~~---~~~~~~~~~l~~ 107 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI----EIDAAS---NNGVDDIREILD 107 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE----Eeeccc---cCCHHHHHHHHH
Confidence 3477899999999999999999998742211 00000 00 00000000 111110 011 1223333
Q ss_pred HHhhcC-CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1832 EQAQST-GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1832 ~~~~~~-~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
.+...+ ....+.||+|.. +.. +..|.+|.. +.+ .|+++.+||.+.++....|+..|||-.+.+.
T Consensus 108 ~~~~~p~~~~~~vviidea~~l~~---~~~~~Ll~~-----le~-----~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 174 (355)
T TIGR02397 108 NVKYAPSSGKYKVYIIDEVHMLSK---SAFNALLKT-----LEE-----PPEHVVFILATTEPHKIPATILSRCQRFDFK 174 (355)
T ss_pred HHhcCcccCCceEEEEeChhhcCH---HHHHHHHHH-----HhC-----CccceeEEEEeCCHHHHHHHHHhheeEEEcC
Confidence 332222 234578888963 222 234444321 111 3567888999999988889999999988886
Q ss_pred C
Q psy2654 1909 P 1909 (1949)
Q Consensus 1909 ~ 1909 (1949)
+
T Consensus 175 ~ 175 (355)
T TIGR02397 175 R 175 (355)
T ss_pred C
Confidence 4
No 246
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0058 Score=78.82 Aligned_cols=146 Identities=13% Similarity=0.219 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCcc-----cccCCCccCcccccccccCCCCCcc
Q psy2654 1751 ILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPMY-----NDLEPKAVTNDELFGIINPSTREWK 1822 (1949)
Q Consensus 1751 ~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~~-----~~i~p~~~~~~el~G~~~~~~~~w~ 1822 (1949)
+..+......-...|+.++.||+|+||||+.+.+|+.++-..+ .++- ..+... +..+++. ++..++...
T Consensus 25 ~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~--~~~d~~e-i~~~~~~~v 101 (527)
T PRK14969 25 VRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSG--RFVDLIE-VDAASNTQV 101 (527)
T ss_pred HHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC--CCCceeE-eeccccCCH
Confidence 3333333333345688999999999999999999998842111 1100 001000 0011211 122111111
Q ss_pred cChHHHHHHHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhcc
Q psy2654 1823 DGLFSCLIREQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSR 1901 (1949)
Q Consensus 1823 dG~l~~~~r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr 1901 (1949)
|- +-.++......+ ....+-+|+|. +|..--+..|.+|.- | | ..|+++.+||-|+|....-|...||
T Consensus 102 d~-ir~l~~~~~~~p~~~~~kVvIIDE-ad~ls~~a~naLLK~-----L---E--epp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 102 DA-MRELLDNAQYAPTRGRFKVYIIDE-VHMLSKSAFNAMLKT-----L---E--EPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred HH-HHHHHHHHhhCcccCCceEEEEcC-cccCCHHHHHHHHHH-----H---h--CCCCCEEEEEEeCChhhCchhHHHH
Confidence 11 112222222222 23446788886 333333556665521 1 1 1367889999999999998888999
Q ss_pred ceEEEecCCC
Q psy2654 1902 AGILYINPQD 1911 (1949)
Q Consensus 1902 ~~~v~~~~~~ 1911 (1949)
|-.+.|.+-.
T Consensus 170 c~~~~f~~l~ 179 (527)
T PRK14969 170 CLQFNLKQMP 179 (527)
T ss_pred HHHHhcCCCC
Confidence 9999998654
No 247
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.017 Score=73.58 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1418 DRCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
+.....+..+++.+..+ +++||+|+|||++++.+|+.++.
T Consensus 22 ~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 22 EIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34456777788776554 47999999999999999999874
No 248
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.62 E-value=0.0044 Score=76.30 Aligned_cols=114 Identities=15% Similarity=0.229 Sum_probs=63.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc-CCCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS-TGDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~-~~~~~~ 1842 (1949)
...|+|+||||||||+++++||+.+ ...+..++...++...+.|. + .++++..+++..... ......
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l-----~~pf~~~da~~L~~~gyvG~-d------~e~~L~~~~~~~~~~l~~a~~g 183 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL-----NVPFAIADATTLTEAGYVGE-D------VENILLKLLQAADYDVEKAQKG 183 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc-----CCCeEEechhhccccccccc-c------HHHHHHHHHHhCcccHHhcccc
Confidence 4579999999999999999999866 22233333333332334442 1 245677666643110 011224
Q ss_pred EEEEcCC--CCc--------------cchhhHHhhhcCCcceecc-CCceeecCCCceEEEEeCCC
Q psy2654 1843 WMVMDGD--IDP--------------MWIESLNTVMDDNKVLTLA-SNERIALTPSMRLLFEISNL 1891 (1949)
Q Consensus 1843 Wiv~Dg~--~d~--------------~w~e~ln~~lddn~~l~l~-~ge~i~~~~~~~~ifE~~~l 1891 (1949)
.|+||+. +.+ .+...|..+|| +....++ .|.+. .|..-.+++-|+|+
T Consensus 184 IV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~-~~~~~~i~i~TsNi 247 (413)
T TIGR00382 184 IIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRK-HPYQEFIQIDTSNI 247 (413)
T ss_pred eEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccCCCcc-ccCCCeEEEEcCCc
Confidence 6888853 222 36677888885 4444443 33332 22233466666666
No 249
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.62 E-value=0.0041 Score=72.95 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred EEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
|+++|+|||||||+.+.|++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988743
No 250
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.011 Score=73.81 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1419 RCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.....+..++..+.. .+++||+|+|||++++.+|+.++.
T Consensus 24 ~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 24 HITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345566777766543 448999999999999999999876
No 251
>PRK09087 hypothetical protein; Validated
Probab=96.60 E-value=0.0079 Score=68.84 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=47.2
Q ss_pred CCCccccccchHHHHHHHHHHHhccC-CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCcc
Q psy2654 1408 TPRLVITPLTDRCYITLSQSLHLNMG-GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAW 1486 (1949)
Q Consensus 1408 ~~~~v~t~~t~r~~~~l~~al~~~~~-~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w 1486 (1949)
-..||.++.-...+..+........+ .+++||+|+|||++++.+++..|..+ ++.. ......+ .+ ... ..
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~-~~~~~~~----~~-~~~-~~ 90 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDALL--IHPN-EIGSDAA----NA-AAE-GP 90 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHH-HcchHHH----Hh-hhc-Ce
Confidence 45677777666555544332222222 57999999999999999998776542 2221 1111111 11 111 47
Q ss_pred cccccccccc
Q psy2654 1487 GCFDEFNRIS 1496 (1949)
Q Consensus 1487 ~~~de~~~l~ 1496 (1949)
+++|+++.++
T Consensus 91 l~iDDi~~~~ 100 (226)
T PRK09087 91 VLIEDIDAGG 100 (226)
T ss_pred EEEECCCCCC
Confidence 8889988764
No 252
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.59 E-value=0.015 Score=75.47 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=64.2
Q ss_pred ccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhccc--------c-
Q psy2654 1413 ITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKG--------L- 1480 (1949)
Q Consensus 1413 ~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g--------~- 1480 (1949)
.+|...+.+..+..+.....+.++.|++||||+.+++.+.... +.|++.+||..-.+ ..+...+.| +
T Consensus 139 ~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~ 217 (463)
T TIGR01818 139 EAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGAN 217 (463)
T ss_pred cCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCcc
Confidence 3466677777777766777788899999999999999988775 46999999988533 333333222 1
Q ss_pred --------cccCccccccccccccchhhHHHHH
Q psy2654 1481 --------AQTGAWGCFDEFNRISVEVLSVVAV 1505 (1949)
Q Consensus 1481 --------~~~g~w~~~de~~~l~~~~ls~~~~ 1505 (1949)
...|.-+++||++.++.++...+..
T Consensus 218 ~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~ 250 (463)
T TIGR01818 218 TRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLR 250 (463)
T ss_pred cCCCCcEEECCCCeEEEEchhhCCHHHHHHHHH
Confidence 1124457888888888877665543
No 253
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0037 Score=70.79 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=50.4
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH----hhhhhhccccccc---------Cccccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY----RSCGNIYKGLAQT---------GAWGCFDEFNRISV 1497 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~----~~l~~~~~g~~~~---------g~w~~~de~~~l~~ 1497 (1949)
+...++.||||+|||-+++.||+.|..|+.+-.|..-+.. +++.+++.-+.|. ...+.+||+++++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 4567899999999999999999999999999998875442 3344444444333 34578899998754
No 254
>KOG0651|consensus
Probab=96.56 E-value=0.0043 Score=70.06 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=73.4
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
...|++|+||||.|||-+.++.|+.+ .+||--+...++-..|-.. -.+++|+.........+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ss~lv~kyiGE--------saRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVSSALVDKYIGE--------SARLIRDMFRYAREVIP 226 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeHhhhhhhhccc--------HHHHHHHHHHHHhhhCc
Confidence 34689999999999999999999876 4677666666776666444 38899988766666667
Q ss_pred EEEEcCCCCcc------------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1843 WMVMDGDIDPM------------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1843 Wiv~Dg~~d~~------------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
.|+|=.++|+. .+|-+|. +| -...-..+++|+.+.+.+-.=||.+
T Consensus 227 ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnq-md-----------gfd~l~rVk~ImatNrpdtLdpaLl 289 (388)
T KOG0651|consen 227 CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQ-MD-----------GFDTLHRVKTIMATNRPDTLDPALL 289 (388)
T ss_pred eEEeehhhhhhccEEeccccchhHHHHHHHHHHHHh-hc-----------cchhcccccEEEecCCccccchhhc
Confidence 88886666543 2222221 11 1223356778888888887777664
No 255
>PRK13808 adenylate kinase; Provisional
Probab=96.56 E-value=0.0047 Score=73.45 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.7
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|+|||||||||+.+.|+..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 256
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.011 Score=75.17 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=77.8
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCcccccCCCccC---cccccccccCCCCCcccChH-HHHHHHHh
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPMYNDLEPKAVT---NDELFGIINPSTREWKDGLF-SCLIREQA 1834 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~~~~i~p~~~~---~~el~G~~~~~~~~w~dG~l-~~~~r~~~ 1834 (1949)
...|+.+++||+|+||||+.+.+|++++-... .++-.+.|-..++ ..+++ .+|..++ -|+= .+.+++..
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~-eidaas~---~gvd~ir~I~~~~ 111 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI-EIDAASN---RGIDDIRALRDAV 111 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE-EEeCccC---CCHHHHHHHHHHH
Confidence 34578899999999999999999998842111 1111110000000 01111 1122111 1211 12223222
Q ss_pred hcC--CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCC
Q psy2654 1835 QST--GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDL 1912 (1949)
Q Consensus 1835 ~~~--~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~ 1912 (1949)
... ....+-+|+|.. +..-.+..|.+|.- |. ..|+++.+||-++++..+.|+..|||..+.+.+-.
T Consensus 112 ~~~P~~~~~KVvIIDEa-d~Lt~~a~naLLk~-----LE-----epp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls- 179 (486)
T PRK14953 112 SYTPIKGKYKVYIIDEA-HMLTKEAFNALLKT-----LE-----EPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPT- 179 (486)
T ss_pred HhCcccCCeeEEEEECh-hhcCHHHHHHHHHH-----Hh-----cCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCC-
Confidence 221 234578888963 22223444554421 11 13567889999999988888889999999887532
Q ss_pred CchhhHHhhhcc
Q psy2654 1913 GWNPYVLSWTDT 1924 (1949)
Q Consensus 1913 ~w~~~~~~w~~~ 1924 (1949)
..-+..|+..
T Consensus 180 --~~el~~~L~~ 189 (486)
T PRK14953 180 --KEQIKEYLKR 189 (486)
T ss_pred --HHHHHHHHHH
Confidence 2344555544
No 257
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.009 Score=77.63 Aligned_cols=157 Identities=13% Similarity=0.248 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc--C--CCccc----------ccCCCccCcccccc
Q psy2654 1747 EDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK--K--KPMYN----------DLEPKAVTNDELFG 1812 (1949)
Q Consensus 1747 ~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~--~--~~~~~----------~i~p~~~~~~el~G 1812 (1949)
.+..+..+.+.+..=+..|++|+.||+|+||||+.+++|++++-.. . .+.+. +.+-.+.+.-+
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e--- 105 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLE--- 105 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEE---
Confidence 3445555555565556678999999999999999999999884211 0 10000 00111111111
Q ss_pred cccCCCCCcccCh--HHHHHHHHhhcC-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC
Q psy2654 1813 IINPSTREWKDGL--FSCLIREQAQST-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS 1889 (1949)
Q Consensus 1813 ~~~~~~~~w~dG~--l~~~~r~~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~ 1889 (1949)
+++.+ .-|+ +-.++......+ ....+-||+|.. +..--+..|.+|.- |- ..|+++.+||-++
T Consensus 106 -~~a~s---~~gvd~IReIie~~~~~P~~a~~KVvIIDEa-d~Ls~~a~naLLKt-----LE-----ePp~~~~fIl~tt 170 (598)
T PRK09111 106 -MDAAS---HTGVDDIREIIESVRYRPVSARYKVYIIDEV-HMLSTAAFNALLKT-----LE-----EPPPHVKFIFATT 170 (598)
T ss_pred -ecccc---cCCHHHHHHHHHHHHhchhcCCcEEEEEECh-HhCCHHHHHHHHHH-----HH-----hCCCCeEEEEEeC
Confidence 12211 0111 112222221111 234578888862 22222444555421 11 1467889999999
Q ss_pred CCCCCChhhhccceEEEecCCCCCchhhHHhhhcc
Q psy2654 1890 NLRTATPATVSRAGILYINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1890 ~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~~ 1924 (1949)
+.....|...|||-.+.|.+-.- .-+..|+..
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~---~el~~~L~~ 202 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEA---DVLAAHLSR 202 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCH---HHHHHHHHH
Confidence 99999999999999988875432 344555544
No 258
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.53 E-value=0.0079 Score=75.97 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=61.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC-CCCCcE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST-GDGPKW 1843 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~-~~~~~W 1843 (1949)
+.++|+||||+||||+++.+++.. ...+..+++..... .-+..++....... .....-
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~-----~~~~~~l~a~~~~~----------------~~ir~ii~~~~~~~~~g~~~v 95 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT-----DAPFEALSAVTSGV----------------KDLREVIEEARQRRSAGRRTI 95 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEecccccH----------------HHHHHHHHHHHHhhhcCCceE
Confidence 479999999999999999999865 22233333221100 01122222221111 123467
Q ss_pred EEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe-CCC-CCCChhhhccceEEEecCCC
Q psy2654 1844 MVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI-SNL-RTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1844 iv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~-~~l-~~asPa~vsr~~~v~~~~~~ 1911 (1949)
|++|.. +.....+.|-..++++.. .++..+ .+. ....|+..|||.++.+.+-.
T Consensus 96 L~IDEi~~l~~~~q~~LL~~le~~~i---------------ilI~att~n~~~~l~~aL~SR~~~~~~~~ls 152 (413)
T PRK13342 96 LFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENPSFEVNPALLSRAQVFELKPLS 152 (413)
T ss_pred EEEechhhhCHHHHHHHHHHhhcCcE---------------EEEEeCCCChhhhccHHHhccceeeEeCCCC
Confidence 888863 234444555555554322 233332 232 35779999999998888643
No 259
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.53 E-value=0.0034 Score=83.22 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=87.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcc------------------------------CCCcccccCCCccCcccccccc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAK------------------------------KKPMYNDLEPKAVTNDELFGII 1814 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~------------------------------~~~~~~~i~p~~~~~~el~G~~ 1814 (1949)
.+|+|.|++|+|||++.+.|++.+.... ....++.+ |-+.+...|||+.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~-p~~~t~~~l~G~~ 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNL-PLGATEDRVVGSL 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeC-CCCCcHHHcCCcc
Confidence 5899999999999999999998762100 01112222 4555667899987
Q ss_pred cCC----CCC--cccChHHHHHHHHhhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEE
Q psy2654 1815 NPS----TRE--WKDGLFSCLIREQAQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLF 1886 (1949)
Q Consensus 1815 ~~~----~~~--w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~if 1886 (1949)
|.. +++ .+-|+|..+ ..--+++|.. +++...+.|-.+|+++.+-.-..|.....|..+.+|.
T Consensus 105 d~~~~l~~g~~~~~~G~L~~A----------~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIa 174 (633)
T TIGR02442 105 DIERALREGEKAFQPGLLAEA----------HRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIG 174 (633)
T ss_pred cHHHHhhcCCeeecCcceeec----------CCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEE
Confidence 532 112 334544321 1235788854 5788888888888887765566788888888887777
Q ss_pred EeCCCC--CCChhhhccceEE
Q psy2654 1887 EISNLR--TATPATVSRAGIL 1905 (1949)
Q Consensus 1887 E~~~l~--~asPa~vsr~~~v 1905 (1949)
+.|.. ..+|+...|+++.
T Consensus 175 -t~np~eg~l~~~L~dR~~l~ 194 (633)
T TIGR02442 175 -TMNPEEGDLRPQLLDRFGLC 194 (633)
T ss_pred -ecCCCCCCCCHHHHhhcceE
Confidence 55554 4789999999863
No 260
>PRK08118 topology modulation protein; Reviewed
Probab=96.52 E-value=0.0016 Score=70.86 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|+|||||||||+.+.|++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999866
No 261
>PRK06851 hypothetical protein; Provisional
Probab=96.52 E-value=0.025 Score=68.50 Aligned_cols=45 Identities=31% Similarity=0.383 Sum_probs=36.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccc
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGL 1480 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~ 1480 (1949)
-++.|++|||||++++.++..+ |..+.++.|+ +|..+|..++...
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~--~dPdslD~viIPe 264 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG--FDPDSLDMVIIPE 264 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC--CCCCCcceEEecc
Confidence 4578999999999999999988 9999999998 4556666665443
No 262
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.012 Score=73.64 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1421 YITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1421 ~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
...+..++..+.- -+++||+|+|||++++.+|+.++..
T Consensus 25 ~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 25 TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3456667776544 3488999999999999999999753
No 263
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.50 E-value=0.0094 Score=66.62 Aligned_cols=36 Identities=31% Similarity=0.250 Sum_probs=27.7
Q ss_pred HHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1422 ITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1422 ~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
..+..++..+.. -+++||+|+|||++++.+|+.+-.
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 345666766543 348899999999999999998753
No 264
>PRK04132 replication factor C small subunit; Provisional
Probab=96.48 E-value=0.015 Score=77.57 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=81.3
Q ss_pred CCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHhhhhhhccccccc----C---ccccccccccccchhhHHHHHH
Q psy2654 1439 PAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYRSCGNIYKGLAQT----G---AWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1439 ~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~~l~~~~~g~~~~----g---~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
|.+.||||++..||+.+ +..++.+|+++......+..++..+++. | -.+.+||+++++.+...++-..
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~ 653 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT 653 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHH
Confidence 77889999999999998 6689999999987777777777654422 2 3677899888887543333111
Q ss_pred HHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCe
Q psy2654 1507 VKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTV 1586 (1949)
Q Consensus 1507 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~ 1586 (1949)
+ . ...+++
T Consensus 654 l-----------------------------------------------------------E-------------ep~~~~ 661 (846)
T PRK04132 654 M-----------------------------------------------------------E-------------MFSSNV 661 (846)
T ss_pred h-----------------------------------------------------------h-------------CCCCCe
Confidence 1 0 012356
Q ss_pred eEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHH
Q psy2654 1587 GMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIM 1627 (1949)
Q Consensus 1587 ~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~ 1627 (1949)
.++++.|+. ..+++.|+++|..+.+..|+...+.+.+
T Consensus 662 ~FILi~N~~----~kIi~tIrSRC~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 662 RFILSCNYS----SKIIEPIQSRCAIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EEEEEeCCh----hhCchHHhhhceEEeCCCCCHHHHHHHH
Confidence 677777753 3688999999999999999877766554
No 265
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.013 Score=76.65 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC-C----Cc-----ccccCCCccCcccccccccCCC
Q psy2654 1749 SFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-K----PM-----YNDLEPKAVTNDELFGIINPST 1818 (1949)
Q Consensus 1749 ~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~-~----~~-----~~~i~p~~~~~~el~G~~~~~~ 1818 (1949)
..+..+.+.+..-...|+++++||+|+||||+++++|+.+.-... . .+ ++.+.... ..+++. ++.
T Consensus 23 ~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~--h~D~~e-i~~-- 97 (620)
T PRK14948 23 AIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGN--ALDVIE-IDA-- 97 (620)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCC--CccEEE-Eec--
Confidence 333434444443345688999999999999999999998842110 0 00 00010000 001111 111
Q ss_pred CCcccChHHHHHHHHhhc----C-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCC
Q psy2654 1819 REWKDGLFSCLIREQAQS----T-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRT 1893 (1949)
Q Consensus 1819 ~~w~dG~l~~~~r~~~~~----~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~ 1893 (1949)
....| ..-+|+.... + ....+-||+|.. |..=-+..|.+|.- | | ..|+++.+|+-+.|...
T Consensus 98 -~~~~~--vd~IReii~~a~~~p~~~~~KViIIDEa-d~Lt~~a~naLLK~-----L---E--ePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 98 -ASNTG--VDNIRELIERAQFAPVQARWKVYVIDEC-HMLSTAAFNALLKT-----L---E--EPPPRVVFVLATTDPQR 163 (620)
T ss_pred -cccCC--HHHHHHHHHHHhhChhcCCceEEEEECc-cccCHHHHHHHHHH-----H---h--cCCcCeEEEEEeCChhh
Confidence 11223 3344444321 1 134578888862 21112344544310 0 1 24467788999999999
Q ss_pred CChhhhccceEEEecCC
Q psy2654 1894 ATPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1894 asPa~vsr~~~v~~~~~ 1910 (1949)
+-|+..|||.++.|..-
T Consensus 164 llpTIrSRc~~~~f~~l 180 (620)
T PRK14948 164 VLPTIISRCQRFDFRRI 180 (620)
T ss_pred hhHHHHhheeEEEecCC
Confidence 99999999999988744
No 266
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.41 E-value=0.0056 Score=76.36 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=69.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC-CCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST-GDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~-~~~~~ 1842 (1949)
..||+|+||||||||++++++|.... ..+..+ +..++.+.|...+ .+.+|...... ...+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v-----~~~~l~~~~~g~~--------~~~i~~~f~~a~~~~p~ 226 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRV-----VGSELVQKFIGEG--------ARLVRELFELAREKAPS 226 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC-----CCEEEe-----ehHHHhHhhccch--------HHHHHHHHHHHHhcCCe
Confidence 46899999999999999999998662 112222 2334444332211 23333322211 12235
Q ss_pred EEEEcCC--C-----------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cce-EEE
Q psy2654 1843 WMVMDGD--I-----------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RAG-ILY 1906 (1949)
Q Consensus 1843 Wiv~Dg~--~-----------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~~-~v~ 1906 (1949)
.|+||.. + ++.+...++.+|.. -+.+.-..++++|..|.....+.||.+. |+. .|+
T Consensus 227 IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~--------ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~ 298 (389)
T PRK03992 227 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE--------MDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIE 298 (389)
T ss_pred EEEEechhhhhcccccCCCCccHHHHHHHHHHHHh--------ccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEE
Confidence 6777731 0 22233334444421 1111123467899999999989999873 553 577
Q ss_pred ecCCCCC
Q psy2654 1907 INPQDLG 1913 (1949)
Q Consensus 1907 ~~~~~~~ 1913 (1949)
+.+.+..
T Consensus 299 v~~P~~~ 305 (389)
T PRK03992 299 VPLPDEE 305 (389)
T ss_pred ECCCCHH
Confidence 7766543
No 267
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.016 Score=74.84 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1419 RCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.....|..++..+.-+ +++||+|||||++++.||+.++.
T Consensus 20 ~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 20 HVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3445566677765433 48899999999999999999874
No 268
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.034 Score=66.50 Aligned_cols=153 Identities=15% Similarity=0.229 Sum_probs=88.5
Q ss_pred HHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccC--CCc-----ccccCCCccCcccccccccCCCCCcccChH
Q psy2654 1754 VVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK--KPM-----YNDLEPKAVTNDELFGIINPSTREWKDGLF 1826 (1949)
Q Consensus 1754 ~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~--~~~-----~~~i~p~~~~~~el~G~~~~~~~~w~dG~l 1826 (1949)
+.+.++.=+..|+.++.||.|+||+++.+.+|+++.-... ..+ ++.+.. -+..+++- +.|...+ ..+-
T Consensus 15 l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~--g~HPD~~~-i~p~~~~--~~I~ 89 (319)
T PRK06090 15 WKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQS--GNHPDLHV-IKPEKEG--KSIT 89 (319)
T ss_pred HHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHc--CCCCCEEE-EecCcCC--CcCC
Confidence 3344444456689999999999999999999998732110 100 011111 11112211 1121100 0122
Q ss_pred HHHHHHHhhc-----CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhcc
Q psy2654 1827 SCLIREQAQS-----TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSR 1901 (1949)
Q Consensus 1827 ~~~~r~~~~~-----~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr 1901 (1949)
+.-+|+.... .....+.+|+|+. |..=.++-|++|- +| | ..|+++.+|+-+++...+-|..+||
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~a-e~m~~~AaNaLLK---tL-----E--EPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPA-DAMNESASNALLK---TL-----E--EPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecch-hhhCHHHHHHHHH---Hh-----c--CCCCCeEEEEEECChhhChHHHHhc
Confidence 3444543221 1234588888863 2222344556651 11 1 2466788999999999999999999
Q ss_pred ceEEEecCCCCCchhhHHhhhccC
Q psy2654 1902 AGILYINPQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1902 ~~~v~~~~~~~~w~~~~~~w~~~~ 1925 (1949)
|-.+.|.+-. ...+..||...
T Consensus 159 Cq~~~~~~~~---~~~~~~~L~~~ 179 (319)
T PRK06090 159 CQQWVVTPPS---TAQAMQWLKGQ 179 (319)
T ss_pred ceeEeCCCCC---HHHHHHHHHHc
Confidence 9999998644 45677788654
No 269
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.031 Score=67.49 Aligned_cols=149 Identities=17% Similarity=0.266 Sum_probs=87.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhcc----CCC----------------cccccCCCccCccccccccc----CC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK----KKP----------------MYNDLEPKAVTNDELFGIIN----PS 1817 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~----~~~----------------~~~~i~p~~~~~~el~G~~~----~~ 1817 (1949)
+..|+.++.||+|+||+++.+.+|+++.-.. +.+ -++.+.|..... ...|.-| ++
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~-~~~~~~~~~~~~~ 97 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAA-EAPGAADEAKEAD 97 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc-cccccccccccch
Confidence 5568999999999999999999999884211 111 111122211000 0000000 00
Q ss_pred ---CCCc----ccChHHHHHHHHhhc----C-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEE
Q psy2654 1818 ---TREW----KDGLFSCLIREQAQS----T-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLL 1885 (1949)
Q Consensus 1818 ---~~~w----~dG~l~~~~r~~~~~----~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~i 1885 (1949)
.+.. ...+-..-+|+.... + ....+-+|+|. .|..=.++-|.+|- +| | ..|+++.+|
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~-ae~m~~~AaNaLLK---tL-----E--EPp~~t~fi 166 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYP-AEALNVAAANALLK---TL-----E--EPPPGTVFL 166 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEec-hhhcCHHHHHHHHH---Hh-----c--CCCcCcEEE
Confidence 0000 012444555544322 1 23457777774 33333455566662 11 1 367788999
Q ss_pred EEeCCCCCCChhhhccceEEEecCCCCCchhhHHhhhccC
Q psy2654 1886 FEISNLRTATPATVSRAGILYINPQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1886 fE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~~~ 1925 (1949)
+-+++...+=|..+|||-.++|.+-. ...+..||...
T Consensus 167 L~t~~~~~LLpTI~SRcq~i~~~~~~---~~~~~~~L~~~ 203 (342)
T PRK06964 167 LVSARIDRLLPTILSRCRQFPMTVPA---PEAAAAWLAAQ 203 (342)
T ss_pred EEECChhhCcHHHHhcCEEEEecCCC---HHHHHHHHHHc
Confidence 99999999999999999999998654 35677788654
No 270
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.38 E-value=0.0046 Score=78.04 Aligned_cols=152 Identities=13% Similarity=0.199 Sum_probs=76.1
Q ss_pred HHHHHHh--cCcEEEEEecCCCChhHHHHHHHHHHHhccCC---CcccccCCCccCcccccccccCCCCCcccChHHHHH
Q psy2654 1756 QLVELFA--VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK---PMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLI 1830 (1949)
Q Consensus 1756 ~l~~~l~--~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~---~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~ 1830 (1949)
.+|.... ..+||+|+||||||||++++++|+.+...... .....+ .+...++.+.|...+ ...+..++
T Consensus 206 ~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl---~v~~~eLl~kyvGet----e~~ir~iF 278 (512)
T TIGR03689 206 ELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL---NIKGPELLNKYVGET----ERQIRLIF 278 (512)
T ss_pred HHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE---eccchhhcccccchH----HHHHHHHH
Confidence 4455433 45799999999999999999999877321100 011111 122334555443221 11122222
Q ss_pred HHHhhcC-CCCCcEEEEcCCCCccc----------hh--hHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChh
Q psy2654 1831 REQAQST-GDGPKWMVMDGDIDPMW----------IE--SLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPA 1897 (1949)
Q Consensus 1831 r~~~~~~-~~~~~Wiv~Dg~~d~~w----------~e--~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa 1897 (1949)
..+.... .....-|+||. +|..+ .+ .+|.+|. .-.| +.-.+++-+|..|.....+-||
T Consensus 279 ~~Ar~~a~~g~p~IIfIDE-iD~L~~~R~~~~s~d~e~~il~~LL~------~LDg--l~~~~~ViVI~ATN~~d~LDpA 349 (512)
T TIGR03689 279 QRAREKASDGRPVIVFFDE-MDSIFRTRGSGVSSDVETTVVPQLLS------ELDG--VESLDNVIVIGASNREDMIDPA 349 (512)
T ss_pred HHHHHHhhcCCCceEEEeh-hhhhhcccCCCccchHHHHHHHHHHH------Hhcc--cccCCceEEEeccCChhhCCHh
Confidence 2222111 12234566663 11110 01 1233321 1111 1222467788888888899999
Q ss_pred hhc--cceE-EEecCCCCC-chhhHHhhhc
Q psy2654 1898 TVS--RAGI-LYINPQDLG-WNPYVLSWTD 1923 (1949)
Q Consensus 1898 ~vs--r~~~-v~~~~~~~~-w~~~~~~w~~ 1923 (1949)
.+. |+-. |+|+..+.. -+.++..++.
T Consensus 350 LlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 350 ILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred hcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 986 6643 788866532 3344444443
No 271
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.02 Score=72.60 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1420 CYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
....+..++..+.- -+++||+|+|||++++.+|+.+...
T Consensus 25 ~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 25 VVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 34456666766543 3489999999999999999998653
No 272
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.35 E-value=0.0077 Score=77.10 Aligned_cols=132 Identities=21% Similarity=0.311 Sum_probs=83.7
Q ss_pred HHHHHHHHH-HHHhcCcEEEEEecCCCChhHHHHHHHHHHH------hccCCCcccccCCCccC----cccccccccCC-
Q psy2654 1750 FILKVVQLV-ELFAVRHSVFIIGFAGTGKSCVWKTLYKTYV------NAKKKPMYNDLEPKAVT----NDELFGIINPS- 1817 (1949)
Q Consensus 1750 ~~~k~~~l~-~~l~~~~~vll~G~~gsGKTt~~~~La~~~~------~~~~~~~~~~i~p~~~~----~~el~G~~~~~- 1817 (1949)
.+..+.+.. ..-....+|+|.|++||||+++.+.+...+. .......++.+|-.+++ ..+|||+-...
T Consensus 227 ~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaf 306 (538)
T PRK15424 227 QMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAF 306 (538)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccc
Confidence 334444433 3455678999999999999999999987621 11122334455554443 35789964321
Q ss_pred ---CCCcccChHHHHHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe-CCC
Q psy2654 1818 ---TREWKDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI-SNL 1891 (1949)
Q Consensus 1818 ---~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~-~~l 1891 (1949)
....+-|+|..+= .-=++|| |.+++..-..|-++|++.....+.+. -..|-++|+|+.+ .||
T Consensus 307 tga~~~~~~Gl~e~A~----------gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 307 TGSRRGGRAGLFEIAH----------GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCDL 374 (538)
T ss_pred cCccccccCCchhccC----------CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCCH
Confidence 1123445554321 1238889 56788889999999988776655443 4567789999987 455
Q ss_pred CC
Q psy2654 1892 RT 1893 (1949)
Q Consensus 1892 ~~ 1893 (1949)
..
T Consensus 375 ~~ 376 (538)
T PRK15424 375 EE 376 (538)
T ss_pred HH
Confidence 43
No 273
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0032 Score=79.13 Aligned_cols=127 Identities=21% Similarity=0.251 Sum_probs=88.9
Q ss_pred CCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc------------cccchhhcccCc---cccccccccchhhH
Q psy2654 1048 APAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC------------GNIYKGLAQTGA---WGCFDEFNRISVEV 1112 (1949)
Q Consensus 1048 ~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~------------~~~~~g~~~~g~---w~~fde~~~l~~~~ 1112 (1949)
|+.||+|+|||++.+.+|+++||.++.++..---|-..+ |++..|+...|. ..++||++.+..+.
T Consensus 354 cLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~ 433 (782)
T COG0466 354 CLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSF 433 (782)
T ss_pred EEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCC
Confidence 578999999999999999999999999999776664433 778888877765 78999999998766
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccC
Q psy2654 1113 LSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVP 1179 (1949)
Q Consensus 1113 Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~p 1179 (1949)
--.=+..|-.++|--+...-+=+++.-..+| +.+-|.+|.|.- ..+|.-|.....-|.+...
T Consensus 434 rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl----~tIP~PLlDRMEiI~lsgY 495 (782)
T COG0466 434 RGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSL----DTIPAPLLDRMEVIRLSGY 495 (782)
T ss_pred CCChHHHHHhhcCHhhcCchhhccccCccch-hheEEEeecCcc----ccCChHHhcceeeeeecCC
Confidence 5555566666666654443222333333333 234455677763 3588888877766665443
No 274
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.015 Score=76.64 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=72.0
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC----CCc-----cccc-CCCccCcccccccccCCCCCcccChHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK----KPM-----YNDL-EPKAVTNDELFGIINPSTREWKDGLFSCLIR 1831 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~----~~~-----~~~i-~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r 1831 (1949)
...|.++++||+|+||||+++.+++.+.-... ..+ +..+ +..+.+.-++ ++. +..-..-+|
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i----~~~-----~~~~vd~ir 106 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM----DAA-----SHTSVDDAR 106 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE----ecc-----ccCCHHHHH
Confidence 34577899999999999999999998742110 000 0000 0011111111 111 001122233
Q ss_pred HHh----hc-CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEE
Q psy2654 1832 EQA----QS-TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILY 1906 (1949)
Q Consensus 1832 ~~~----~~-~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~ 1906 (1949)
+.. .. .....+-||+|.. +..=-+.+|.+|.- |- ..|+++.+||.+.++....|...|||-.+.
T Consensus 107 ~ii~~~~~~p~~~~~kVvIIDEa-~~L~~~a~naLLk~-----LE-----epp~~tv~Il~t~~~~kll~tI~SR~~~i~ 175 (585)
T PRK14950 107 EIIERVQFRPALARYKVYIIDEV-HMLSTAAFNALLKT-----LE-----EPPPHAIFILATTEVHKVPATILSRCQRFD 175 (585)
T ss_pred HHHHHHhhCcccCCeEEEEEeCh-HhCCHHHHHHHHHH-----Hh-----cCCCCeEEEEEeCChhhhhHHHHhccceee
Confidence 322 11 1234578999973 11112444544321 10 124678899999999999999999999999
Q ss_pred ecCCC
Q psy2654 1907 INPQD 1911 (1949)
Q Consensus 1907 ~~~~~ 1911 (1949)
|.+-.
T Consensus 176 f~~l~ 180 (585)
T PRK14950 176 FHRHS 180 (585)
T ss_pred CCCCC
Confidence 87543
No 275
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.023 Score=73.71 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1419 RCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.....+..++..+..+ +++||+|+|||++++.||+.++.
T Consensus 23 ~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 23 FVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 3445677778776655 58899999999999999999975
No 276
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.0096 Score=77.85 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=77.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----cccc-CCCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YNDL-EPKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~~i-~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
...|..+++||+|+||||+.+.+|++++-..+ .++ +..+ +-.+.+.-++-| .++ -| ..-+|+
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~----~s~---~~--v~~ir~ 106 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDG----ASN---TG--VDDIRE 106 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeec----cCc---cC--HHHHHH
Confidence 34688999999999999999999999842211 010 0001 111111112111 110 01 112222
Q ss_pred H----hhcC-CCCCcEEEEcCCCCccchhhHHhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceE
Q psy2654 1833 Q----AQST-GDGPKWMVMDGDIDPMWIESLNTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGI 1904 (1949)
Q Consensus 1833 ~----~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~ 1904 (1949)
. ...+ ....+-+|+|.. |..=.+..|.+| ++ .|+++.+||-|++...+.|...|||-.
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev-~~Lt~~a~naLLk~LEe-------------pp~~~~fIl~t~~~~kl~~tI~SRc~~ 172 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEV-HMLSTNAFNALLKTLEE-------------PPPHVKFIFATTEPHKVPITILSRCQR 172 (576)
T ss_pred HHHHHHhccccCCceEEEEECh-hhCCHHHHHHHHHHHHc-------------CCCCeEEEEEeCChhhhhHHHHHhhhh
Confidence 2 1111 234578888973 211123344443 33 367899999999999999999999999
Q ss_pred EEecCCCCCchhhHHhhhc
Q psy2654 1905 LYINPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1905 v~~~~~~~~w~~~~~~w~~ 1923 (1949)
+.|.+-.. .-+..|+.
T Consensus 173 ~~f~~l~~---~~i~~~L~ 188 (576)
T PRK14965 173 FDFRRIPL---QKIVDRLR 188 (576)
T ss_pred hhcCCCCH---HHHHHHHH
Confidence 98875432 33445554
No 277
>KOG0741|consensus
Probab=96.32 E-value=0.0073 Score=72.66 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=48.4
Q ss_pred HHHhcCc--EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhh-
Q psy2654 1759 ELFAVRH--SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQ- 1835 (1949)
Q Consensus 1759 ~~l~~~~--~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~- 1835 (1949)
+.+...| |++|+||||+|||-+.+-+.+.++. =.||-+.-.|.+..|...+.+=.--+|..+=++-..
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA---------rePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNA---------REPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcC---------CCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 3345554 9999999999999999998877632 246667777777777655522111122111111111
Q ss_pred cCCCCCcEEEEc
Q psy2654 1836 STGDGPKWMVMD 1847 (1949)
Q Consensus 1836 ~~~~~~~Wiv~D 1847 (1949)
.....-+.||||
T Consensus 320 g~~SgLHIIIFD 331 (744)
T KOG0741|consen 320 GANSGLHIIIFD 331 (744)
T ss_pred CccCCceEEEeh
Confidence 122344899999
No 278
>KOG0743|consensus
Probab=96.30 E-value=0.003 Score=75.76 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=51.6
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCcccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNR 1494 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~ 1494 (1949)
.+|=+|+||||||||+.|.++|..|+.-++-++.++-.+-..|.+++..+ ...+.+++.+++.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t-~~kSIivIEDIDc 297 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLAT-PNKSILLIEDIDC 297 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhC-CCCcEEEEeeccc
Confidence 56668999999999999999999999999999998877777777766544 4566777777664
No 279
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.026 Score=67.64 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=88.1
Q ss_pred HHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc---CCCc-----ccccCCCccCcccccccccCCCCCcccChHH
Q psy2654 1756 QLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK---KKPM-----YNDLEPKAVTNDELFGIINPSTREWKDGLFS 1827 (1949)
Q Consensus 1756 ~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~---~~~~-----~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~ 1827 (1949)
+.+..-...|+.++.||+|+||+++.+.+|+++.-.. ...+ ++.+.... ..+++- +.|.. ...+=.
T Consensus 16 ~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~--HPD~~~-i~p~~---~~~I~i 89 (325)
T PRK06871 16 QAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGN--HPDFHI-LEPID---NKDIGV 89 (325)
T ss_pred HHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC--CCCEEE-Ecccc---CCCCCH
Confidence 3333345569999999999999999999999883211 1111 11111111 112211 11210 012335
Q ss_pred HHHHHHhhc----C-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccc
Q psy2654 1828 CLIREQAQS----T-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRA 1902 (1949)
Q Consensus 1828 ~~~r~~~~~----~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~ 1902 (1949)
.-+|+.... + ....+.+|+|+. |.-=.++-|++|- +| | ..|+++.+|+-+++...+-|..+|||
T Consensus 90 d~iR~l~~~~~~~~~~g~~KV~iI~~a-~~m~~~AaNaLLK---tL-----E--EPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 90 DQVREINEKVSQHAQQGGNKVVYIQGA-ERLTEAAANALLK---TL-----E--EPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred HHHHHHHHHHhhccccCCceEEEEech-hhhCHHHHHHHHH---Hh-----c--CCCCCeEEEEEECChHhCchHHHhhc
Confidence 556654322 2 245578888863 2222355566651 11 1 24678889999999999999999999
Q ss_pred eEEEecCCCCCchhhHHhhhcc
Q psy2654 1903 GILYINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1903 ~~v~~~~~~~~w~~~~~~w~~~ 1924 (1949)
-.+.+.+-.- ..+..||..
T Consensus 159 ~~~~~~~~~~---~~~~~~L~~ 177 (325)
T PRK06871 159 QTWLIHPPEE---QQALDWLQA 177 (325)
T ss_pred eEEeCCCCCH---HHHHHHHHH
Confidence 9999987533 456667755
No 280
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.02 Score=76.97 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1420 CYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
....|..++..+.. -+++||.|||||++++.||+.|..
T Consensus 23 v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 23 VTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 34456666666544 358899999999999999999974
No 281
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.26 E-value=0.0059 Score=77.13 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=89.9
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCC--------------------C--cccccCCCccCcccccccccCC
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK--------------------P--MYNDLEPKAVTNDELFGIINPS 1817 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~--------------------~--~~~~i~p~~~~~~el~G~~~~~ 1817 (1949)
+....+.++|+||||||||++.+.++..+....+. . +-.+--|.+.|..-|+|.=
T Consensus 206 aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg--- 282 (506)
T PRK09862 206 TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG--- 282 (506)
T ss_pred eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC---
Confidence 34467899999999999999999998654211110 0 0011112334445566641
Q ss_pred CCCcccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC----
Q psy2654 1818 TREWKDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL---- 1891 (1949)
Q Consensus 1818 ~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l---- 1891 (1949)
...+.|.++.+ ..-.+++|. ..++..++.|...|++..+-.-..|..+..|.++++|-.+.-.
T Consensus 283 -~~~~pG~l~~A----------~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 283 -AIPGPGEISLA----------HNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred -ceehhhHhhhc----------cCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 12344554432 124688895 4588899999999998887656677778899999888777543
Q ss_pred -----------------CCCChhhhccceE-EEecCC
Q psy2654 1892 -----------------RTATPATVSRAGI-LYINPQ 1910 (1949)
Q Consensus 1892 -----------------~~asPa~vsr~~~-v~~~~~ 1910 (1949)
...|++.+.|+.| |.+++.
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~ 388 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLP 388 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCC
Confidence 2478899999998 456543
No 282
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.015 Score=75.77 Aligned_cols=139 Identities=16% Similarity=0.252 Sum_probs=76.0
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC-----------CCc-----ccccCC-CccCcccccccccCCCCCcccC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-----------KPM-----YNDLEP-KAVTNDELFGIINPSTREWKDG 1824 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~-----------~~~-----~~~i~p-~~~~~~el~G~~~~~~~~w~dG 1824 (1949)
...|+.|+.||+|+||||+.+.+|+++.-... ..+ +..+.. .+.+..++ +..+ ..|
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~----d~~s---~~~ 108 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEF----DAAS---NNS 108 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEe----cccc---cCC
Confidence 44588999999999999999999998832110 000 000000 11111111 1111 011
Q ss_pred hHHHHHHHHhhc-----CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1825 LFSCLIREQAQS-----TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1825 ~l~~~~r~~~~~-----~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
..-+|+.... ....++-+|+|.. +..-.+..|.+|.- |- ..|+++.+||-+++...+-|+..
T Consensus 109 --vd~Ir~l~e~~~~~P~~~~~KVvIIdEa-d~Lt~~a~naLLK~-----LE-----ePp~~tv~IL~t~~~~kLl~TI~ 175 (620)
T PRK14954 109 --VDDIRQLRENVRYGPQKGRYRVYIIDEV-HMLSTAAFNAFLKT-----LE-----EPPPHAIFIFATTELHKIPATIA 175 (620)
T ss_pred --HHHHHHHHHHHHhhhhcCCCEEEEEeCh-hhcCHHHHHHHHHH-----Hh-----CCCCCeEEEEEeCChhhhhHHHH
Confidence 1223332211 1234578888862 22222344444421 00 13456778888999999999999
Q ss_pred ccceEEEecCCCCCchhhHHhhhc
Q psy2654 1900 SRAGILYINPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1900 sr~~~v~~~~~~~~w~~~~~~w~~ 1923 (1949)
|||-+|.|.+-.- .-+..|+.
T Consensus 176 SRc~~vef~~l~~---~ei~~~L~ 196 (620)
T PRK14954 176 SRCQRFNFKRIPL---DEIQSQLQ 196 (620)
T ss_pred hhceEEecCCCCH---HHHHHHHH
Confidence 9999999976432 33455554
No 283
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.26 E-value=0.0068 Score=70.09 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=23.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..+++|+||||||||++.++++.....
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 358999999999999999999887643
No 284
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.26 E-value=0.0016 Score=68.02 Aligned_cols=73 Identities=25% Similarity=0.320 Sum_probs=50.7
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHh--------cceEEEEeCCCCCCHhhhhh----------------------hcccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAI--------GIMVYVFNCSEQMDYRSCGN----------------------IYKGL 1480 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~l--------g~~~~~~n~~~~~~~~~l~~----------------------~~~g~ 1480 (1949)
...++++||+|+|||++++.+++.+ ..+++.++|....+...+.+ +...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4456689999999999999999999 88999999988665443321 11122
Q ss_pred cccCc-cccccccccc-cchhhHHH
Q psy2654 1481 AQTGA-WGCFDEFNRI-SVEVLSVV 1503 (1949)
Q Consensus 1481 ~~~g~-w~~~de~~~l-~~~~ls~~ 1503 (1949)
.+.+. .+++||++.+ +.+.+..+
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l 108 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFL 108 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHH
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHH
Confidence 33344 7899999999 76666655
No 285
>KOG0737|consensus
Probab=96.25 E-value=0.019 Score=67.12 Aligned_cols=84 Identities=26% Similarity=0.264 Sum_probs=59.7
Q ss_pred ccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhh------hhcccc--cc
Q psy2654 1411 LVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG------NIYKGL--AQ 1482 (1949)
Q Consensus 1411 ~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~------~~~~g~--~~ 1482 (1949)
.|+-|+-.+-+..-..-++...|++|+||+|||||-+++++|+-.|-.+..+..+.-++ +-++ +.+--+ --
T Consensus 107 ~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~-KWfgE~eKlv~AvFslAsKl 185 (386)
T KOG0737|consen 107 LVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS-KWFGEAQKLVKAVFSLASKL 185 (386)
T ss_pred HHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-hhHHHHHHHHHHHHhhhhhc
Confidence 45556655555555555667889999999999999999999999999999999988777 3222 111111 22
Q ss_pred cCccccccccccc
Q psy2654 1483 TGAWGCFDEFNRI 1495 (1949)
Q Consensus 1483 ~g~w~~~de~~~l 1495 (1949)
.++.+.+||++..
T Consensus 186 ~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 186 QPSIIFIDEVDSF 198 (386)
T ss_pred CcceeehhhHHHH
Confidence 4666777777643
No 286
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.24 E-value=0.0055 Score=69.86 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|+|||||||||+.+.||+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 287
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.023 Score=74.00 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcc---CCCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1420 CYITLSQSLHLNM---GGAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1420 ~~~~l~~al~~~~---~~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
....+..++..+. +.+++||+|+|||++++.||+.++..
T Consensus 32 ~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 32 MVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3455666666655 34588999999999999999998754
No 288
>PRK06893 DNA replication initiation factor; Validated
Probab=96.23 E-value=0.0091 Score=68.82 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
+..++|+||||||||.+.+++++.....
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3457999999999999999999887544
No 289
>PRK14529 adenylate kinase; Provisional
Probab=96.23 E-value=0.0094 Score=67.30 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=47.7
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhccC--CCcccccCCCccCcccc------cccccCCCCCcccChHHHHHHHHhhcCC
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKK--KPMYNDLEPKAVTNDEL------FGIINPSTREWKDGLFSCLIREQAQSTG 1838 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~~--~~~~~~i~p~~~~~~el------~G~~~~~~~~w~dG~l~~~~r~~~~~~~ 1838 (1949)
|+|.|||||||||..+.|++.++-..- ...++..-+......+. -|.+.| |-+...++++......
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvp------dei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVP------DDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcch------HHHHHHHHHHHHhccC
Confidence 889999999999999999988732110 00000000111111111 133333 2355666666554443
Q ss_pred CCCcEEEEcCCC-CccchhhHHhhhc
Q psy2654 1839 DGPKWMVMDGDI-DPMWIESLNTVMD 1863 (1949)
Q Consensus 1839 ~~~~Wiv~Dg~~-d~~w~e~ln~~ld 1863 (1949)
..- +||||-. ...=++.|...|.
T Consensus 77 -~~g-~iLDGfPRt~~Qa~~l~~~l~ 100 (223)
T PRK14529 77 -KNG-WLLDGFPRNKVQAEKLWEALQ 100 (223)
T ss_pred -CCc-EEEeCCCCCHHHHHHHHHHHH
Confidence 323 6679954 5556677666654
No 290
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.22 E-value=0.0075 Score=78.01 Aligned_cols=126 Identities=19% Similarity=0.284 Sum_probs=79.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccc-cCCCccCccccccc--ccCCCCCcc--cChHHHHHHHHhhcCCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYND-LEPKAVTNDELFGI--INPSTREWK--DGLFSCLIREQAQSTGD 1839 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~-i~p~~~~~~el~G~--~~~~~~~w~--dG~l~~~~r~~~~~~~~ 1839 (1949)
-.|+|+|+||+|||++.+.+++...+. .+.. ..+. ...|.+. .++.+++|. -|.+.. .
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~----~~~~~~~~~---~~~l~~~~~~~~~~g~~~~~~G~l~~----------A 299 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRA----VYTTGKGSS---AVGLTAAVTRDPETREFTLEGGALVL----------A 299 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcc----eEcCCCCCC---cCCccccceEccCcceEEecCccEEe----------c
Confidence 479999999999999999999865221 1111 1111 1112221 222344443 444332 1
Q ss_pred CCcEEEEcC--CCCccchhhHHhhhcCCcceec-cCCceeecCCCceEEEEeCCCC-------------CCChhhhccce
Q psy2654 1840 GPKWMVMDG--DIDPMWIESLNTVMDDNKVLTL-ASNERIALTPSMRLLFEISNLR-------------TATPATVSRAG 1903 (1949)
Q Consensus 1840 ~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l-~~ge~i~~~~~~~~ifE~~~l~-------------~asPa~vsr~~ 1903 (1949)
..--+++|. .+++.-...|..+|++..+ ++ ..|....+|..+++|-.+.-.. +.+|+.+||+.
T Consensus 300 ~~Gil~iDEi~~l~~~~q~~L~e~me~~~i-~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFd 378 (509)
T smart00350 300 DNGVCCIDEFDKMDDSDRTAIHEAMEQQTI-SIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFD 378 (509)
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHhcCEE-EEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCcee
Confidence 124577784 3466677788888876544 44 3577888999998887765432 69999999999
Q ss_pred EEEec
Q psy2654 1904 ILYIN 1908 (1949)
Q Consensus 1904 ~v~~~ 1908 (1949)
|+++-
T Consensus 379 Li~~~ 383 (509)
T smart00350 379 LLFVV 383 (509)
T ss_pred eEEEe
Confidence 98754
No 291
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.026 Score=67.50 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=87.8
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCC--Cc---ccccCCCccCccccccc-ccCCCCC--cccChHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK--PM---YNDLEPKAVTNDELFGI-INPSTRE--WKDGLFSCLIREQ 1833 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~--~~---~~~i~p~~~~~~el~G~-~~~~~~~--w~dG~l~~~~r~~ 1833 (1949)
...|+.++.||+|+||++++..+|+++.-.... .. .+.+. +-+..+++=- ..|+..+ -+-.+-...+|+.
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~--~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIA--AGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHh--cCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 456899999999999999999999987321100 00 00111 1111122100 0121100 0112556667766
Q ss_pred hhc----C-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1834 AQS----T-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1834 ~~~----~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
... + ....+.+|+|. .|..=.++-|.+|- +| | ..|+++.+|+-+++...+-|...|||-.+.|.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~-ae~m~~~AaNaLLK---tL-----E--EPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~ 170 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDP-ADAINRAACNALLK---TL-----E--EPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170 (319)
T ss_pred HHHHhhCcccCCcEEEEecc-HhhhCHHHHHHHHH---Hh-----h--CCCCCCeEEEEECChhhCchHHHhhheEeeCC
Confidence 532 1 23558888884 33333355566662 11 1 24567889999999999999999999999998
Q ss_pred CCCCCchhhHHhhhccC
Q psy2654 1909 PQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1909 ~~~~~w~~~~~~w~~~~ 1925 (1949)
+-.- ..+..||...
T Consensus 171 ~~~~---~~~~~~L~~~ 184 (319)
T PRK08769 171 LPPA---HEALAWLLAQ 184 (319)
T ss_pred CcCH---HHHHHHHHHc
Confidence 6332 5677888654
No 292
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.19 E-value=0.017 Score=69.16 Aligned_cols=80 Identities=10% Similarity=-0.006 Sum_probs=48.2
Q ss_pred cccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCC-CCCCC--CCChhhHhhccccccc
Q psy2654 1539 GCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGR--AELPENLKALFRPCAM 1615 (1949)
Q Consensus 1539 ~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp-~~~g~--~~LP~~lk~~fr~v~~ 1615 (1949)
..++|+-.++.+.+..+-..++. +.+...|....+.-+.-+++|+|| .|..+ .+.+++|+.++.-+.+
T Consensus 240 ~~f~Ei~K~~~~~l~~LL~~~qE---------~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~v 310 (361)
T smart00763 240 LEFVEMFKADIKFLHPLLTATQE---------GNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKV 310 (361)
T ss_pred EEEeehhcCCHHHHHHHhhhhhc---------ceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeC
Confidence 34488888888877654444332 333333332233444578999999 45544 2448999999997776
Q ss_pred ccC-CHHHHHHHH
Q psy2654 1616 VVP-DFALICEIM 1627 (1949)
Q Consensus 1616 ~~p-D~~~i~e~~ 1627 (1949)
.=| ++..=++|+
T Consensus 311 pY~l~~~~E~~Iy 323 (361)
T smart00763 311 PYCLRVSEEAQIY 323 (361)
T ss_pred CCcCCHHHHHHHH
Confidence 533 444433433
No 293
>PRK05642 DNA replication initiation factor; Validated
Probab=96.19 E-value=0.0078 Score=69.50 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=41.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
+.+++||+|+|||++++++|+.+ |+.++.+++.+-+.. ...++..+ .....+++|+++.++.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~-~~~d~LiiDDi~~~~~ 111 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--GPELLDNL-EQYELVCLDDLDVIAG 111 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--hHHHHHhh-hhCCEEEEechhhhcC
Confidence 44688999999999999998754 678888877553321 12222222 2335788888887653
No 294
>KOG0726|consensus
Probab=96.18 E-value=0.0069 Score=67.33 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=65.8
Q ss_pred HHHHHHhcC--cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHH
Q psy2654 1756 QLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQ 1833 (1949)
Q Consensus 1756 ~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~ 1833 (1949)
++|+-+... .||||+|+||+|||.+.++.|+..+. ...+ +.-.||.-.|-. || .+++|+.
T Consensus 209 E~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA----TFlR------vvGseLiQkylG------dG--pklvRql 270 (440)
T KOG0726|consen 209 EYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA----TFLR------VVGSELIQKYLG------DG--PKLVREL 270 (440)
T ss_pred HHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch----hhhh------hhhHHHHHHHhc------cc--hHHHHHH
Confidence 467766665 69999999999999999998864421 1111 112233333322 33 5666766
Q ss_pred hhcCCCCCcEEEEcCCCCcc------------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCC
Q psy2654 1834 AQSTGDGPKWMVMDGDIDPM------------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTAT 1895 (1949)
Q Consensus 1834 ~~~~~~~~~Wiv~Dg~~d~~------------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~as 1895 (1949)
.+-......=|||=..+|+. -+|-||.+=. .--...+++|+.|.-+...-
T Consensus 271 F~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG------------FdsrgDvKvimATnrie~LD 338 (440)
T KOG0726|consen 271 FRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG------------FDSRGDVKVIMATNRIETLD 338 (440)
T ss_pred HHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC------------ccccCCeEEEEecccccccC
Confidence 54433222335543222222 4566665421 11123578888888888888
Q ss_pred hhhhc
Q psy2654 1896 PATVS 1900 (1949)
Q Consensus 1896 Pa~vs 1900 (1949)
||.+-
T Consensus 339 PaLiR 343 (440)
T KOG0726|consen 339 PALIR 343 (440)
T ss_pred HhhcC
Confidence 88753
No 295
>PRK07261 topology modulation protein; Provisional
Probab=96.17 E-value=0.0092 Score=65.25 Aligned_cols=22 Identities=41% Similarity=0.807 Sum_probs=20.3
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|+|+|||||||+.+.|++.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 296
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.15 E-value=0.0046 Score=76.55 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHHHh--cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHh
Q psy2654 1757 LVELFA--VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQA 1834 (1949)
Q Consensus 1757 l~~~l~--~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~ 1834 (1949)
+|..+. ...||+|+||||||||++++++|.... ..+..+.+ .++...|...+ ...+..+++.+.
T Consensus 170 ~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~fi~i~~-----s~l~~k~~ge~----~~~lr~lf~~A~ 235 (398)
T PTZ00454 170 LYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATFIRVVG-----SEFVQKYLGEG----PRMVRDVFRLAR 235 (398)
T ss_pred HHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEeh-----HHHHHHhcchh----HHHHHHHHHHHH
Confidence 444443 357999999999999999999998651 11222221 23333332211 112223333321
Q ss_pred hcCCCCCcEEEEcCC-------------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc-
Q psy2654 1835 QSTGDGPKWMVMDGD-------------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS- 1900 (1949)
Q Consensus 1835 ~~~~~~~~Wiv~Dg~-------------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs- 1900 (1949)
...+.-|+||.. .+......+..+|.. -+.+.-..++.+|+.|.....+-||.+.
T Consensus 236 ---~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~--------ld~~~~~~~v~VI~aTN~~d~LDpAllR~ 304 (398)
T PTZ00454 236 ---ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ--------MDGFDQTTNVKVIMATNRADTLDPALLRP 304 (398)
T ss_pred ---hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH--------hhccCCCCCEEEEEecCCchhCCHHHcCC
Confidence 123356777741 011222223333321 0111223467899999999999999864
Q ss_pred -cc-eEEEecCCC
Q psy2654 1901 -RA-GILYINPQD 1911 (1949)
Q Consensus 1901 -r~-~~v~~~~~~ 1911 (1949)
|. -.|++...+
T Consensus 305 GRfd~~I~~~~P~ 317 (398)
T PTZ00454 305 GRLDRKIEFPLPD 317 (398)
T ss_pred CcccEEEEeCCcC
Confidence 43 236776544
No 297
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.27 Score=60.36 Aligned_cols=64 Identities=28% Similarity=0.323 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHhccCC--CCCCCCCCChhHHHHHHHHHhcce-----EEEEeCCCC-CCHhhhhhhccccc
Q psy2654 1418 DRCYITLSQSLHLNMGG--APAGPAGTGKTETTKDLGKAIGIM-----VYVFNCSEQ-MDYRSCGNIYKGLA 1481 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~--~l~G~~g~GKt~~v~~la~~lg~~-----~~~~n~~~~-~~~~~l~~~~~g~~ 1481 (1949)
+++...+.-+++...|. +++||+|||||.+++.+++.+-.. ++.+||... +.++.+.+++..+.
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 44445566666666664 488999999999999999998887 899999874 55666777766554
No 298
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.14 E-value=0.01 Score=73.68 Aligned_cols=114 Identities=14% Similarity=0.214 Sum_probs=63.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhh-cCCCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQ-STGDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~-~~~~~~~ 1842 (1949)
..+|+|+||||||||++.++||+.+ ...+..++...++...+.|.- .++++..+++...- -......
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l-----~~pf~~id~~~l~~~gyvG~d-------~e~~l~~l~~~~~~~~~~a~~g 175 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL-----DVPFAIADATTLTEAGYVGED-------VENILLKLLQAADYDVEKAQRG 175 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCCceecchhhcccCCcccch-------HHHHHHHHHHhccccHHHcCCc
Confidence 4679999999999999999999876 233444554444433344431 12244443332110 0012335
Q ss_pred EEEEcCC--CCc--------------cchhhHHhhhcCCcceeccC-CceeecCCCceEEEEeCCC
Q psy2654 1843 WMVMDGD--IDP--------------MWIESLNTVMDDNKVLTLAS-NERIALTPSMRLLFEISNL 1891 (1949)
Q Consensus 1843 Wiv~Dg~--~d~--------------~w~e~ln~~lddn~~l~l~~-ge~i~~~~~~~~ifE~~~l 1891 (1949)
-|++|.. +.. .+...|-.+|| +....+|. |.+ ..|..-.+++-|+|+
T Consensus 176 Ii~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v~~~gg~-~~~~~~~~~i~t~ni 239 (412)
T PRK05342 176 IVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE-GTVASVPPQGGR-KHPQQEFIQVDTTNI 239 (412)
T ss_pred EEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh-cCeEEeCCCCCc-CcCCCCeEEeccCCc
Confidence 7888842 111 25577888886 55556653 332 222233456666665
No 299
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.12 E-value=0.036 Score=71.47 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccc-----------
Q psy2654 1415 PLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGL----------- 1480 (1949)
Q Consensus 1415 ~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~----------- 1480 (1949)
+.....+..+...-....+++++|++||||+.+++.+-... +.|++.+||..-. ...+...+.|.
T Consensus 146 ~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~~~lfg~~~~~~~~~~~~ 224 (441)
T PRK10365 146 PAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLESELFGHEKGAFTGADKR 224 (441)
T ss_pred HHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHHHHhcCCCCCCcCCCCcC
Confidence 44555555555555566778899999999999999997654 4789999999643 35555444332
Q ss_pred ------cccCccccccccccccchhhHHH
Q psy2654 1481 ------AQTGAWGCFDEFNRISVEVLSVV 1503 (1949)
Q Consensus 1481 ------~~~g~w~~~de~~~l~~~~ls~~ 1503 (1949)
...|.-+++||++.+++.+...+
T Consensus 225 ~~g~~~~a~~gtl~ldei~~l~~~~q~~l 253 (441)
T PRK10365 225 REGRFVEADGGTLFLDEIGDISPMMQVRL 253 (441)
T ss_pred CCCceeECCCCEEEEeccccCCHHHHHHH
Confidence 11245577888888887766544
No 300
>PRK14526 adenylate kinase; Provisional
Probab=96.12 E-value=0.012 Score=66.31 Aligned_cols=89 Identities=12% Similarity=0.238 Sum_probs=46.8
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhc---cCCCcccccCCCc---cCcccc--cccccCCCCCcccChHHHHHHHHhhcCC
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNA---KKKPMYNDLEPKA---VTNDEL--FGIINPSTREWKDGLFSCLIREQAQSTG 1838 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~---~~~~~~~~i~p~~---~~~~el--~G~~~~~~~~w~dG~l~~~~r~~~~~~~ 1838 (1949)
++|+|||||||||+.+.||+.+.-. .+...-..+...+ -...++ -|.+.|+ -+..+++.+......
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd------~~~~~lv~~~l~~~~ 76 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD------SITIKIVEDKINTIK 76 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCCh------HHHHHHHHHHHhccc
Confidence 7899999999999999999865211 0000000111111 111222 1333332 255566666554433
Q ss_pred CCCcEEEEcCCC-CccchhhHHhhh
Q psy2654 1839 DGPKWMVMDGDI-DPMWIESLNTVM 1862 (1949)
Q Consensus 1839 ~~~~Wiv~Dg~~-d~~w~e~ln~~l 1862 (1949)
....||+ ||-. +..=++.|...+
T Consensus 77 ~~~g~il-DGfPR~~~Qa~~l~~~~ 100 (211)
T PRK14526 77 NNDNFIL-DGFPRNINQAKALDKFL 100 (211)
T ss_pred ccCcEEE-ECCCCCHHHHHHHHHhc
Confidence 3445655 9964 545556665544
No 301
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.014 Score=75.14 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=72.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccC---CCc-----cc-ccCCCccCcccccccccCCCCCcccChHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK---KPM-----YN-DLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQ 1833 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~---~~~-----~~-~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~ 1833 (1949)
..|.+|+.||+|+||||+.+++|+++.-... ..+ +. +.+-.+.+.-++-| .+ .-|+ ..+|+.
T Consensus 37 i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~----a~---~~~I--d~iR~L 107 (624)
T PRK14959 37 VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG----AS---NRGI--DDAKRL 107 (624)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec----cc---ccCH--HHHHHH
Confidence 3578999999999999999999998842110 110 00 01112222222211 11 1121 222322
Q ss_pred ---hh-c-CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1834 ---AQ-S-TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1834 ---~~-~-~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
.. . .....+.||+|.. |..=-+..|.+|.- | | ..++++.+||-+.+...+.|...|||-.+.|.
T Consensus 108 ~~~~~~~p~~g~~kVIIIDEa-d~Lt~~a~naLLk~-----L---E--EP~~~~ifILaTt~~~kll~TI~SRcq~i~F~ 176 (624)
T PRK14959 108 KEAIGYAPMEGRYKVFIIDEA-HMLTREAFNALLKT-----L---E--EPPARVTFVLATTEPHKFPVTIVSRCQHFTFT 176 (624)
T ss_pred HHHHHhhhhcCCceEEEEECh-HhCCHHHHHHHHHH-----h---h--ccCCCEEEEEecCChhhhhHHHHhhhhccccC
Confidence 11 1 1234589999964 11112334554421 0 0 02457889999999888888889999999887
Q ss_pred CCC
Q psy2654 1909 PQD 1911 (1949)
Q Consensus 1909 ~~~ 1911 (1949)
+-.
T Consensus 177 pLs 179 (624)
T PRK14959 177 RLS 179 (624)
T ss_pred CCC
Confidence 543
No 302
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.037 Score=72.86 Aligned_cols=38 Identities=32% Similarity=0.393 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhc
Q psy2654 1419 RCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
.....|..++..+.-+ +++||+|+|||++++.||+.++
T Consensus 23 ~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 23 HVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445566777766554 6899999999999999999996
No 303
>KOG2028|consensus
Probab=96.05 E-value=0.015 Score=66.73 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=65.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEEE
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWMV 1845 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv 1845 (1949)
.++|-||||+||||+.+.++... +...++.|...+++.. +.+ .-|+|.++-+... -..++=|+
T Consensus 164 SmIlWGppG~GKTtlArlia~ts----k~~SyrfvelSAt~a~---------t~d-vR~ife~aq~~~~---l~krkTil 226 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTS----KKHSYRFVELSATNAK---------TND-VRDIFEQAQNEKS---LTKRKTIL 226 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhc----CCCceEEEEEeccccc---------hHH-HHHHHHHHHHHHh---hhcceeEE
Confidence 68999999999999999999765 3344444544443311 111 1233443333221 12233344
Q ss_pred -EcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCC-CChhhhccceEEEecCCC
Q psy2654 1846 -MDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRT-ATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1846 -~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~-asPa~vsr~~~v~~~~~~ 1911 (1949)
+|. +.+.|..--|-=.-.+-+|..+.+... |+|.+. .--|.+|||.++-+..-.
T Consensus 227 FiDE------iHRFNksQQD~fLP~VE~G~I~lIGAT------TENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 227 FIDE------IHRFNKSQQDTFLPHVENGDITLIGAT------TENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred EeHH------hhhhhhhhhhcccceeccCceEEEecc------cCCCccchhHHHHhccceeEeccCC
Confidence 454 466776655533333446665544322 333332 446789999999887543
No 304
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.05 E-value=0.0081 Score=74.68 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=65.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC-CCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST-GDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~-~~~~~ 1842 (1949)
..||+|+||||||||+++++++..+. ..+..+. ..++.+.+.. --...++...... ...+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~-----~~~~~v~-----~~~l~~~~~g--------~~~~~i~~~f~~a~~~~p~ 217 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVV-----GSELVRKYIG--------EGARLVREIFELAKEKAPS 217 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC-----CCEEecc-----hHHHHHHhhh--------HHHHHHHHHHHHHHhcCCc
Confidence 46899999999999999999998651 1122221 1223222211 1122233322111 12235
Q ss_pred EEEEcCC-------------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cce-EEE
Q psy2654 1843 WMVMDGD-------------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RAG-ILY 1906 (1949)
Q Consensus 1843 Wiv~Dg~-------------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~~-~v~ 1906 (1949)
.|++|.. .++.....++.+|.. -+.+.-++++++|..+.....+.|+.+. |+. .|+
T Consensus 218 il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~--------ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~ 289 (364)
T TIGR01242 218 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE--------LDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIE 289 (364)
T ss_pred EEEhhhhhhhccccccCCCCccHHHHHHHHHHHHH--------hhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEE
Confidence 6788831 122222334444321 0111223578899999999888888874 543 566
Q ss_pred ecCCC
Q psy2654 1907 INPQD 1911 (1949)
Q Consensus 1907 ~~~~~ 1911 (1949)
+...+
T Consensus 290 v~~P~ 294 (364)
T TIGR01242 290 VPLPD 294 (364)
T ss_pred eCCcC
Confidence 76544
No 305
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.061 Score=65.28 Aligned_cols=154 Identities=16% Similarity=0.249 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhc---cCCCc-----ccccCCCccCcccccccccCCCCCcccC
Q psy2654 1753 KVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNA---KKKPM-----YNDLEPKAVTNDELFGIINPSTREWKDG 1824 (1949)
Q Consensus 1753 k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~---~~~~~-----~~~i~p~~~~~~el~G~~~~~~~~w~dG 1824 (1949)
++.+.++.-+..|+.++.||+|+||+++...+|+++.=. +...+ ++.+.. -+..+++ .+.|+.. ...
T Consensus 13 ~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~--g~HPD~~-~i~p~~~--~~~ 87 (334)
T PRK07993 13 QLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQA--GTHPDYY-TLTPEKG--KSS 87 (334)
T ss_pred HHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCCCCEE-EEecccc--ccc
Confidence 344455555667999999999999999999999988311 11110 011110 1111211 1112211 012
Q ss_pred hHHHHHHHHhhc----C-CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1825 LFSCLIREQAQS----T-GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1825 ~l~~~~r~~~~~----~-~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
+-..-+|+.... + ....+.+|+|+. |.-=.++-|++|- +| | ..|+++.+|+-+++...+-|..+
T Consensus 88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~a-e~m~~~AaNaLLK---tL-----E--EPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 88 LGVDAVREVTEKLYEHARLGGAKVVWLPDA-ALLTDAAANALLK---TL-----E--EPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEcch-HhhCHHHHHHHHH---Hh-----c--CCCCCeEEEEEECChhhChHHHH
Confidence 334555554322 2 245678888863 2222244456651 11 1 14667889999999999999999
Q ss_pred ccceEEEecCCCCCchhhHHhhhccC
Q psy2654 1900 SRAGILYINPQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1900 sr~~~v~~~~~~~~w~~~~~~w~~~~ 1925 (1949)
|||-.+++.+-. ...+..||...
T Consensus 157 SRCq~~~~~~~~---~~~~~~~L~~~ 179 (334)
T PRK07993 157 SRCRLHYLAPPP---EQYALTWLSRE 179 (334)
T ss_pred hccccccCCCCC---HHHHHHHHHHc
Confidence 999999998743 46778898543
No 306
>KOG0727|consensus
Probab=96.03 E-value=0.0031 Score=68.37 Aligned_cols=68 Identities=22% Similarity=0.198 Sum_probs=50.0
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC------CCHhhhhhhccccc-ccCcccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ------MDYRSCGNIYKGLA-QTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~------~~~~~l~~~~~g~~-~~g~w~~~de~~~l~ 1496 (1949)
-..+|++++||+|||||.++|++|+...-.++.++.|+- -....+.-+|+=+. .+.+.+.+||++.+.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaia 261 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIA 261 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHh
Confidence 346899999999999999999999999999999998872 22333333444332 235667778877553
No 307
>PLN02674 adenylate kinase
Probab=96.02 E-value=0.014 Score=66.80 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|.|||||||||..+.||+.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 569999999999999999999866
No 308
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.02 E-value=0.031 Score=76.05 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=119.1
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHH
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~ 1504 (1949)
.....|.+++-++|+.-|..+..||+..| +.+..+...++-+. ...+.+..+++.|.|+++.+++..+ .-|..+.
T Consensus 113 s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~~~-~a~~~l~~a~~~G~Wv~L~N~HL~~-~wl~~Le 190 (707)
T PF03028_consen 113 SSPTTPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQGP-EAEKALKEAAKEGHWVLLQNCHLAP-SWLPQLE 190 (707)
T ss_dssp TTTTC-EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHHHH-HHHHHHHHHHHHTSEEEEETGGGGC-CCHHCHH
T ss_pred cCCCCceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCchHH-HHHHHHHHHhcCCeEEEcccchhHH-HHHHHHH
Confidence 34456667778899999999999999999 99999998877666 6788999999999999999999885 3455444
Q ss_pred HHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEec
Q psy2654 1505 VQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVT 1584 (1949)
Q Consensus 1505 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 1584 (1949)
..+..+. . ..|+
T Consensus 191 ~~l~~~~------------------------------------------------------------------~--~~h~ 202 (707)
T PF03028_consen 191 KKLESLS------------------------------------------------------------------P--EIHP 202 (707)
T ss_dssp HHHHC-S------------------------------------------------------------------S--TTST
T ss_pred HHHhccc------------------------------------------------------------------c--cccc
Confidence 3332110 0 4599
Q ss_pred CeeEEEEeCCCCCCCCCChhhHhhcccccccccCC-HHHHHHHHHhh--hchh-h------HHHHHHHHHHHHHHHHH--
Q psy2654 1585 TVGMFITMNPGYAGRAELPENLKALFRPCAMVVPD-FALICEIMLVS--EGFQ-E------ARLLSRKFITLYSLCKE-- 1652 (1949)
Q Consensus 1585 ~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD-~~~i~e~~L~~--~gf~-~------~~~la~k~~~~~~~~~~-- 1652 (1949)
+||+|+|..|.- .+|.+|....+.|....|. +.....-.+.. ..+. . .+.+.-.+.-|...+.+
T Consensus 203 ~FRL~lt~~~~~----~~P~~lL~~s~kv~~E~p~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~ 278 (707)
T PF03028_consen 203 NFRLFLTSEPSP----SFPISLLQSSIKVTYEPPPGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERR 278 (707)
T ss_dssp T-EEEEEEESST----TS-HHHHHCSEEEEE---SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCcc----cCCHHHHHcccceeeCChhHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999843 3999999999888887664 54433333332 1221 1 12222222223333333
Q ss_pred Hh---cCCCCCCCchhhHHHHHHhhcccccCC--CCCcHHHHHHHHHhh-hcCCCCC-cccHHHHHHhHhccC
Q psy2654 1653 LL---SKQDHYDWGLRAIKSVLVVAGSLKRGD--RQRPEDQVLMRALRD-FNIPKII-TEDLQVFMGLIGDLF 1718 (1949)
Q Consensus 1653 ~~---s~~~~~~~~lr~l~~vl~~a~~~~~~~--~~~~e~~~l~~a~~~-~~~~~l~-~~d~~~~~~l~~~~f 1718 (1949)
.+ .-...|+|+-..++..+.......... ...+ -..+...+.. .+-.++. ..|..++..++..+|
T Consensus 279 ~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ip-w~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f 350 (707)
T PF03028_consen 279 RYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIP-WDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFF 350 (707)
T ss_dssp HCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTT-HHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHS
T ss_pred hcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCc-HHHHHHHhhhceecCeeccHHHHHHHHHHHHHHc
Confidence 22 234579998777766655443322111 1111 1112222222 2444443 346677777766665
No 309
>KOG1969|consensus
Probab=96.01 E-value=0.0078 Score=75.50 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCcc---------ccccccccccchhhHHHH
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAW---------GCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w---------~~~de~~~l~~~~ls~~~ 1504 (1949)
.+|+||+|.||||++.-+|+..|..++.+|.|+.-....+..-+.++.+..+. +++||++-.+....-++-
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHH
Confidence 46999999999999999999999999999999998888887777776655443 578999999966666554
Q ss_pred HHH
Q psy2654 1505 VQV 1507 (1949)
Q Consensus 1505 ~~~ 1507 (1949)
+.+
T Consensus 409 slv 411 (877)
T KOG1969|consen 409 SLV 411 (877)
T ss_pred HHH
Confidence 444
No 310
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.037 Score=67.97 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc---CC---------------CcccccCCCccCccc
Q psy2654 1748 DSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK---KK---------------PMYNDLEPKAVTNDE 1809 (1949)
Q Consensus 1748 ~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~---~~---------------~~~~~i~p~~~~~~e 1809 (1949)
+.....+.+.+..=...|+.++.||+|+||+++...+|+.+.-.. .. ..++.+. +-+..+
T Consensus 25 ~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~~HPD 102 (365)
T PRK07471 25 AAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AGAHGG 102 (365)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--ccCCCC
Confidence 333344444455455678999999999999999999999883211 00 0000010 111122
Q ss_pred cccc---ccCCCCCcccChHHHHHHHHhhc-----CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCC
Q psy2654 1810 LFGI---INPSTREWKDGLFSCLIREQAQS-----TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPS 1881 (1949)
Q Consensus 1810 l~G~---~~~~~~~w~dG~l~~~~r~~~~~-----~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~ 1881 (1949)
++-- .+..+...+..|-+.-+|+.... .....+.||+|.. |..=.++.|.+|. .| | ..|++
T Consensus 103 l~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDea-d~m~~~aanaLLK---~L-----E--epp~~ 171 (365)
T PRK07471 103 LLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTA-DEMNANAANALLK---VL-----E--EPPAR 171 (365)
T ss_pred eEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEech-HhcCHHHHHHHHH---HH-----h--cCCCC
Confidence 2211 11111123344555666765432 1234578888862 2222355566651 11 1 12456
Q ss_pred ceEEEEeCCCCCCChhhhccceEEEecCCCCCchhhHHhhhccC
Q psy2654 1882 MRLLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1882 ~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~~~ 1925 (1949)
..+|+-+.+....-|...|||-.|.+.+-. ..-+..|+...
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~---~~~i~~~L~~~ 212 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLA---PEDVIDALAAA 212 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCC---HHHHHHHHHHh
Confidence 678888888888889999999999998643 24566777653
No 311
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.99 E-value=0.01 Score=72.11 Aligned_cols=144 Identities=20% Similarity=0.225 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCC---CCCc
Q psy2654 1749 SFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPS---TREW 1821 (1949)
Q Consensus 1749 ~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~---~~~w 1821 (1949)
.+..-..++-.+.....+|+|.|++||||+++.+++.....+.. ..+..+|-.+++ ..++||.-... ...-
T Consensus 7 ~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~--~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~ 84 (329)
T TIGR02974 7 AFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQ--GPLVKLNCAALSENLLDSELFGHEAGAFTGAQKR 84 (329)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccC--CCeEEEeCCCCChHHHHHHHhccccccccCcccc
Confidence 33344445555666788999999999999999998876543322 233445444443 25678853210 1112
Q ss_pred ccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-CCC------
Q psy2654 1822 KDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-NLR------ 1892 (1949)
Q Consensus 1822 ~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-~l~------ 1892 (1949)
+.|.+..+ ..-=++||+ .++...-..|-.+|++...-.+ |..-..+.++|+|+.+. ||.
T Consensus 85 ~~G~~~~a----------~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~at~~~l~~~~~~g 152 (329)
T TIGR02974 85 HQGRFERA----------DGGTLFLDELATASLLVQEKLLRVIEYGEFERV--GGSQTLQVDVRLVCATNADLPALAAEG 152 (329)
T ss_pred cCCchhhC----------CCCEEEeCChHhCCHHHHHHHHHHHHcCcEEec--CCCceeccceEEEEechhhHHHHhhcC
Confidence 34544322 113388884 5688888888899988765444 33336678899999873 332
Q ss_pred CCChhhhccceEEE
Q psy2654 1893 TATPATVSRAGILY 1906 (1949)
Q Consensus 1893 ~asPa~vsr~~~v~ 1906 (1949)
...|....|++.+.
T Consensus 153 ~fr~dL~~rl~~~~ 166 (329)
T TIGR02974 153 RFRADLLDRLAFDV 166 (329)
T ss_pred chHHHHHHHhcchh
Confidence 23466677775543
No 312
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.98 E-value=0.0082 Score=66.82 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|+|||||||||+.+.||+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999876
No 313
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.98 E-value=0.011 Score=75.91 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=78.9
Q ss_pred HHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCC----CCCcccChHHHHH
Q psy2654 1759 ELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPS----TREWKDGLFSCLI 1830 (1949)
Q Consensus 1759 ~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~----~~~w~dG~l~~~~ 1830 (1949)
.......+|+|.|++||||+++.+.+.....+. ...+..+|-.+++ ..+|||+-... ....+.|+|..+=
T Consensus 230 ~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~--~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~ 307 (526)
T TIGR02329 230 LYARSDATVLILGESGTGKELVAQAIHQLSGRR--DFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH 307 (526)
T ss_pred HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC--CCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC
Confidence 445567899999999999999999987654222 2234445544443 25789864321 1123445554221
Q ss_pred HHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe-CCCCC
Q psy2654 1831 REQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI-SNLRT 1893 (1949)
Q Consensus 1831 r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~-~~l~~ 1893 (1949)
.-=++|| +.++...-..|-++|.++....+.+.+ ..|.++|+|+-+ .||..
T Consensus 308 ----------gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~--~~~~dvRiIaat~~~l~~ 361 (526)
T TIGR02329 308 ----------RGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTE--PVPVDVRVVAATHCALTT 361 (526)
T ss_pred ----------CceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCc--eeeecceEEeccCCCHHH
Confidence 1238889 567888899999999887766554444 567789999987 34543
No 314
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.98 E-value=0.018 Score=57.46 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
|.|+||||+|||++.+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988743
No 315
>PLN02842 nucleotide kinase
Probab=95.97 E-value=0.01 Score=74.30 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEecCCCChhHHHHHHHHHH
Q psy2654 1768 FIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1768 ll~G~~gsGKTt~~~~La~~~ 1788 (1949)
||.|+|||||||..+.|++.+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~l 21 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKF 21 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHh
Confidence 689999999999999999876
No 316
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.017 Score=59.44 Aligned_cols=99 Identities=14% Similarity=0.239 Sum_probs=56.4
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhcc----C---------C--CcccccCCCccCcccc----------cccccCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAK----K---------K--PMYNDLEPKAVTNDEL----------FGIINPS 1817 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~----~---------~--~~~~~i~p~~~~~~el----------~G~~~~~ 1817 (1949)
...-|.+.|+||+||||+++-++..+...+ + . .-+.+++-.+= ...+ .|.|--+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg-~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATG-EEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCC-ceEEEEEcCCCCcccceEEee
Confidence 345689999999999999999998874331 0 0 00111111000 0001 1222111
Q ss_pred CCCcccChHHHHHHHHhhcCCCCCcEEEEc--CCC---CccchhhHHhhhcCCcc
Q psy2654 1818 TREWKDGLFSCLIREQAQSTGDGPKWMVMD--GDI---DPMWIESLNTVMDDNKV 1867 (1949)
Q Consensus 1818 ~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~---d~~w~e~ln~~lddn~~ 1867 (1949)
. +--+-+...++|++... ..-||.| ||+ ...+.+.+..+|++.+.
T Consensus 83 v-~~le~i~~~al~rA~~~----aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp 132 (179)
T COG1618 83 V-EGLEEIAIPALRRALEE----ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP 132 (179)
T ss_pred H-HHHHHHhHHHHHHHhhc----CCEEEEecccchhhccHHHHHHHHHHhcCCCc
Confidence 0 11111445555655333 4789999 887 68899999999976663
No 317
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.93 E-value=0.039 Score=68.32 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=69.4
Q ss_pred ccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcc---eEEEEeCCCCCCH---hhh----hhhccccc-
Q psy2654 1413 ITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGI---MVYVFNCSEQMDY---RSC----GNIYKGLA- 1481 (1949)
Q Consensus 1413 ~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~---~~~~~n~~~~~~~---~~l----~~~~~g~~- 1481 (1949)
-+|.+.+.+..+..+-.+..++++.|++||||-.+++++=+.-.| |++.+||..-... +.| .+.|.|+.
T Consensus 146 ~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~ 225 (464)
T COG2204 146 ESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAIT 225 (464)
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCccc
Confidence 468899999999999999999999999999999999988777766 9999999763221 112 24555553
Q ss_pred --------ccCccccccccccccchhhHHH
Q psy2654 1482 --------QTGAWGCFDEFNRISVEVLSVV 1503 (1949)
Q Consensus 1482 --------~~g~w~~~de~~~l~~~~ls~~ 1503 (1949)
..|.-+.+||+..+|.++...+
T Consensus 226 ~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kL 255 (464)
T COG2204 226 RRIGRFEQANGGTLFLDEIGEMPLELQVKL 255 (464)
T ss_pred ccCcceeEcCCceEEeeccccCCHHHHHHH
Confidence 2466677788888777766544
No 318
>PRK10536 hypothetical protein; Provisional
Probab=95.88 E-value=0.03 Score=63.73 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=90.2
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCC-C----cccChHHHH-----
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTR-E----WKDGLFSCL----- 1829 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~-~----w~dG~l~~~----- 1829 (1949)
++..+.-|++.||+|||||++..+++...... +......+....++..+.+|++ |.+- | |---+.-.+
T Consensus 70 al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~ge~LGfL-PG~~~eK~~p~~~pi~D~L~~~~~ 147 (262)
T PRK10536 70 AIESKQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQADEDLGFL-PGDIAEKFAPYFRPVYDVLVRRLG 147 (262)
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCchhhhCcC-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 44556789999999999999999988743212 2222233344456778888887 3322 1 322111111
Q ss_pred ---HHHHh---------------hcCCCCCcEEEEcCC--CCccchhhHHhhhc-CCcceeccCCceeecCCCceEEEEe
Q psy2654 1830 ---IREQA---------------QSTGDGPKWMVMDGD--IDPMWIESLNTVMD-DNKVLTLASNERIALTPSMRLLFEI 1888 (1949)
Q Consensus 1830 ---~r~~~---------------~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~ld-dn~~l~l~~ge~i~~~~~~~~ifE~ 1888 (1949)
++... ....=...+||+|.. +++.-+..+.+=+. +.+.+.+.+-..|-+|.. ..
T Consensus 148 ~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~~-----~~ 222 (262)
T PRK10536 148 ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRG-----VK 222 (262)
T ss_pred hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCCC-----CC
Confidence 11110 001113479999964 45555555554444 444455566666666642 12
Q ss_pred CCCCCCChhh--hccceEEEecCCCCCchhhHHhhhcc
Q psy2654 1889 SNLRTATPAT--VSRAGILYINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1889 ~~l~~asPa~--vsr~~~v~~~~~~~~w~~~~~~w~~~ 1924 (1949)
+-|.+|.=.. ...+|+|+++.+++-=.++++.|+..
T Consensus 223 sGL~~~~~~~k~~~~~~~i~l~~~d~vRs~l~~~~~~a 260 (262)
T PRK10536 223 SGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHA 260 (262)
T ss_pred CCHHHHHHHhCCCCceEEEEEecCceEecHHHHHHHHH
Confidence 3333333222 46799999998888778888888754
No 319
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.031 Score=68.18 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1418 DRCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
+.....+..+++.+.. .+++||.|+|||++++.+|+.+..
T Consensus 29 ~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 29 EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4566788888888875 558899999999999999999866
No 320
>PRK06217 hypothetical protein; Validated
Probab=95.88 E-value=0.012 Score=65.26 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|.|+|||||||+.+.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999865
No 321
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.86 E-value=0.015 Score=75.32 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=80.6
Q ss_pred HHHHHHh-ccC-CCCCCCCCCChhHHHHHHHHHhcc--eEEEEeCCCCCCHhhhhhhc--------------ccccc--c
Q psy2654 1424 LSQSLHL-NMG-GAPAGPAGTGKTETTKDLGKAIGI--MVYVFNCSEQMDYRSCGNIY--------------KGLAQ--T 1483 (1949)
Q Consensus 1424 l~~al~~-~~~-~~l~G~~g~GKt~~v~~la~~lg~--~~~~~n~~~~~~~~~l~~~~--------------~g~~~--~ 1483 (1949)
++.|+.- ..| +++.|+.||||++.++.|+..|.- |++.. +.+.+...|.+-+ .|+.. .
T Consensus 16 ~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~--p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah 93 (584)
T PRK13406 16 ALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRL--PPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD 93 (584)
T ss_pred HHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccC--CCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc
Confidence 3445555 554 558899999999999999999986 54433 3333333322111 12111 1
Q ss_pred CccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHh
Q psy2654 1484 GAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1563 (1949)
Q Consensus 1484 g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~ 1563 (1949)
|..+.+||+|++++.+++.+ .+-++
T Consensus 94 ~GvL~lDe~n~~~~~~~~aL----------------------------------------------------leame--- 118 (584)
T PRK13406 94 GGVLVLAMAERLEPGTAARL----------------------------------------------------AAALD--- 118 (584)
T ss_pred CCEEEecCcccCCHHHHHHH----------------------------------------------------HHHHh---
Confidence 33444444444444444443 33222
Q ss_pred hhhhhcccccee--ccceEEEecCeeEEEEeCC-CCCCCCCChhhHhhcccc-cccccCCHH
Q psy2654 1564 DSVKMRKSRFNF--MGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRP-CAMVVPDFA 1621 (1949)
Q Consensus 1564 ~~l~~~~~~~~~--~~~~i~~~~~~~~f~tmnp-~~~g~~~LP~~lk~~fr~-v~~~~pD~~ 1621 (1949)
.+.+.+ +|.++.....|.+.+|+|| .|. ..||+.|..+|-- |.+..|+..
T Consensus 119 ------~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lLDRf~l~v~v~~~~~~ 172 (584)
T PRK13406 119 ------TGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAALADRLAFHLDLDGLALR 172 (584)
T ss_pred ------CCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHhHhheEEEEEcCCCChH
Confidence 233444 5788888889999999998 465 5799999998864 455555444
No 322
>PF13173 AAA_14: AAA domain
Probab=95.84 E-value=0.017 Score=59.97 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=67.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
++..++|.||.||||||+++.+++.+. ....+..+|-.... ..+..+ .+ +...+++.. .....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~---~~~~~~------~~--~~~~~~~~~---~~~~~ 63 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR---DRRLAD------PD--LLEYFLELI---KPGKK 63 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH---HHHHhh------hh--hHHHHHHhh---ccCCc
Confidence 357899999999999999999987662 11112222211111 111000 01 233333331 12558
Q ss_pred EEEEcCCC-CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCC----ChhhhccceEEEecC
Q psy2654 1843 WMVMDGDI-DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTA----TPATVSRAGILYINP 1909 (1949)
Q Consensus 1843 Wiv~Dg~~-d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~a----sPa~vsr~~~v~~~~ 1909 (1949)
.|++|..- -+.|.+.++.+.|+. +++++++..++.... +-+...|+..+.|.|
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~--------------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~P 121 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNG--------------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYP 121 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhc--------------cCceEEEEccchHHHhhcccccCCCeEEEEEECC
Confidence 99999643 468999999999863 234555555544433 344567777777765
No 323
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.061 Score=70.69 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhc
Q psy2654 1420 CYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
....+..++..+.- -+++||.|+|||++++.+|+.+.
T Consensus 25 ~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 25 LTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456677766543 34889999999999999999984
No 324
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.019 Score=70.66 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
..+++||+|+|||+++..||+.++
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999999
No 325
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.80 E-value=0.02 Score=74.26 Aligned_cols=124 Identities=13% Similarity=0.198 Sum_probs=65.0
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
...|++|+||||||||++++++|... ...+..++ ..++...+...+ ..-+..++..+. ...+.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~-----~~~~~~i~-----~~~~~~~~~g~~----~~~l~~~f~~a~---~~~p~ 149 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSIS-----GSDFVEMFVGVG----ASRVRDLFEQAK---KNAPC 149 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc-----CCCeeecc-----HHHHHHHHhccc----HHHHHHHHHHHH---hcCCC
Confidence 34689999999999999999999754 12222222 222322221111 011223333321 12335
Q ss_pred EEEEcCC-------------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cc-eEEE
Q psy2654 1843 WMVMDGD-------------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RA-GILY 1906 (1949)
Q Consensus 1843 Wiv~Dg~-------------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~-~~v~ 1906 (1949)
.|++|.. .+..+-..+|.+|.. - +.+.-.+.+.+|..|.....+-||.++ |+ ..|+
T Consensus 150 Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~------~--d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~ 221 (495)
T TIGR01241 150 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE------M--DGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVV 221 (495)
T ss_pred EEEEechhhhhhccccCcCCccHHHHHHHHHHHhh------h--ccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEE
Confidence 7788842 112233344444321 0 011112346678888888889999886 44 3466
Q ss_pred ecCCC
Q psy2654 1907 INPQD 1911 (1949)
Q Consensus 1907 ~~~~~ 1911 (1949)
+...+
T Consensus 222 i~~Pd 226 (495)
T TIGR01241 222 VDLPD 226 (495)
T ss_pred cCCCC
Confidence 66544
No 326
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.018 Score=72.23 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc---CCCcccccCCCccCcccccc--cccCCCCCccc
Q psy2654 1749 SFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK---KKPMYNDLEPKAVTNDELFG--IINPSTREWKD 1823 (1949)
Q Consensus 1749 ~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~---~~~~~~~i~p~~~~~~el~G--~~~~~~~~w~d 1823 (1949)
.++..+......=+..|+-++.||-|+||||+.|++|++++-.. ..++-.+.+.++++..-+.- .+|..++.
T Consensus 23 ~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~--- 99 (515)
T COG2812 23 HVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNT--- 99 (515)
T ss_pred HHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhcc---
Confidence 34444445555556779999999999999999999999995332 22332222223332210000 01222222
Q ss_pred ChHHHHHHHHhhc-----CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhh
Q psy2654 1824 GLFSCLIREQAQS-----TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPAT 1898 (1949)
Q Consensus 1824 G~l~~~~r~~~~~-----~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~ 1898 (1949)
| +.=+|+.... .....|-+|+|. ++-.=-.+.|.+|-- | | ..|+++.+||.|++...+-|-.
T Consensus 100 g--VddiR~i~e~v~y~P~~~ryKVyiIDE-vHMLS~~afNALLKT---L-----E--EPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 100 G--VDDIREIIEKVNYAPSEGRYKVYIIDE-VHMLSKQAFNALLKT---L-----E--EPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred C--hHHHHHHHHHhccCCccccceEEEEec-HHhhhHHHHHHHhcc---c-----c--cCccCeEEEEecCCcCcCchhh
Confidence 2 2334444322 123457888886 222223566777721 1 1 4578999999999999998888
Q ss_pred hccceEEEec
Q psy2654 1899 VSRAGILYIN 1908 (1949)
Q Consensus 1899 vsr~~~v~~~ 1908 (1949)
+|||--..+.
T Consensus 167 lSRcq~f~fk 176 (515)
T COG2812 167 LSRCQRFDFK 176 (515)
T ss_pred hhcccccccc
Confidence 9999987765
No 327
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.75 E-value=0.0092 Score=80.20 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=77.0
Q ss_pred HHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCCCCcccChHHHHH
Q psy2654 1755 VQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPSTREWKDGLFSCLI 1830 (1949)
Q Consensus 1755 ~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~~~w~dG~l~~~~ 1830 (1949)
.++-.+.....+|+|.|+|||||+++.+++.....+.. ..+..+|-.+++ ..+|||+.......-.-|.|..+
T Consensus 339 ~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~--~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a- 415 (638)
T PRK11388 339 HFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAA--GPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA- 415 (638)
T ss_pred HHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccC--CCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC-
Confidence 34444556778999999999999999999887653322 233445544443 36799976332222333443211
Q ss_pred HHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC
Q psy2654 1831 REQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS 1889 (1949)
Q Consensus 1831 r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~ 1889 (1949)
..-=++|| +.++...-..|-.+|+++....+ |..-..|-++|+|+.+.
T Consensus 416 ---------~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 416 ---------HGGTLFLEKVEYLSPELQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTT 465 (638)
T ss_pred ---------CCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEecc
Confidence 11338888 45688888899999987766544 33345556789999764
No 328
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.74 E-value=0.013 Score=61.96 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
++.++|+|||||||||+.+.++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 46799999999999999999998773
No 329
>KOG0745|consensus
Probab=95.73 E-value=0.0067 Score=71.40 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=52.1
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC-------CHhh-hhhhcccc------cccCcccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM-------DYRS-CGNIYKGL------AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~-------~~~~-l~~~~~g~------~~~g~w~~~de~~~l~ 1496 (1949)
+..+++.||+|+|||-+++-||+.|..|+++..|..-+ |.++ +.+++..+ +|.| .+.+||++++.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqG-IVflDEvDKi~ 304 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQG-IVFLDEVDKIT 304 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcC-eEEEehhhhhc
Confidence 45688999999999999999999999999999998843 3333 44444433 3444 57889999986
Q ss_pred chh
Q psy2654 1497 VEV 1499 (1949)
Q Consensus 1497 ~~~ 1499 (1949)
..+
T Consensus 305 ~~~ 307 (564)
T KOG0745|consen 305 KKA 307 (564)
T ss_pred ccC
Confidence 443
No 330
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.039 Score=66.73 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.|.-...+..+...=+...+-+++||+|+|||++++.+|+.+-.
T Consensus 5 yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 5 YPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 47777777777765333334558899999999999999999863
No 331
>PLN02459 probable adenylate kinase
Probab=95.70 E-value=0.02 Score=65.82 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.++|+|||||||||..+.||+.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48889999999999999999876
No 332
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.70 E-value=0.11 Score=68.51 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1418 DRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
+.....+..|+..+...+++||+|||||++++.+|+.++..
T Consensus 24 ~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 24 EEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34556677788888888899999999999999999999865
No 333
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.68 E-value=0.0084 Score=61.54 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|.|||||||||+.+.||+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999977
No 334
>PRK02496 adk adenylate kinase; Provisional
Probab=95.67 E-value=0.0093 Score=66.42 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+++.|||||||||+.+.|++.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999876
No 335
>KOG0652|consensus
Probab=95.67 E-value=0.024 Score=62.02 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..||+++||||+|||.+.++.|.-.
T Consensus 205 PKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred CCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3699999999999999999877543
No 336
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.66 E-value=0.015 Score=70.54 Aligned_cols=141 Identities=23% Similarity=0.295 Sum_probs=89.2
Q ss_pred HHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccC----CCccCcccccccccC---CCCCcccChHH
Q psy2654 1755 VQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE----PKAVTNDELFGIINP---STREWKDGLFS 1827 (1949)
Q Consensus 1755 ~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~----p~~~~~~el~G~~~~---~~~~w~dG~l~ 1827 (1949)
.|+-..--...+|||.|+||+||+.+.+.+.....+....+.+ .+| +.+.-..+|||.--. ...+=+-|+|.
T Consensus 92 eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI-~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe 170 (403)
T COG1221 92 EQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFI-AFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFE 170 (403)
T ss_pred HHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEE-EEEHHHhCcCHHHHHHhccccceeecccCCcCchhe
Confidence 3333334456799999999999999999998554442233322 222 222223458885211 12334556654
Q ss_pred HHHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-CCCCCChh--hhcc-
Q psy2654 1828 CLIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-NLRTATPA--TVSR- 1901 (1949)
Q Consensus 1828 ~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-~l~~asPa--~vsr- 1901 (1949)
.+= .--+.+| +.+.+..-|.|=++||++-.-.+.+ .=+.+.++|+++.|. |+..+-=+ ++-|
T Consensus 171 ~A~----------GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r 238 (403)
T COG1221 171 QAN----------GGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATTEDLEEAVLAGADLTRR 238 (403)
T ss_pred ecC----------CCEEehhhhhhCCHhHHHHHHHHHHcCceEecCC--CCCcCCCceeeeccccCHHHHHHhhcchhhh
Confidence 321 1347788 6778999999999999987655544 668899999999984 44444433 5444
Q ss_pred ceEEEec
Q psy2654 1902 AGILYIN 1908 (1949)
Q Consensus 1902 ~~~v~~~ 1908 (1949)
+..+.+.
T Consensus 239 l~~~~I~ 245 (403)
T COG1221 239 LNILTIT 245 (403)
T ss_pred hcCceec
Confidence 6555544
No 337
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.65 E-value=0.024 Score=71.75 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=36.4
Q ss_pred CccccccchHHHHHHHHHHHhc-----cCCCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCC
Q psy2654 1410 RLVITPLTDRCYITLSQSLHLN-----MGGAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSE 1466 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~~-----~~~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~ 1466 (1949)
.||..|.-...+ ..+.++..+ .|.+++||+|+|||++++++|+.+ |..++.+++.+
T Consensus 116 nFv~g~~n~~A~-~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 116 NFVIGSSNEQAF-IAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred cccCCCcHHHHH-HHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 355555433333 344444332 234589999999999999999965 46777777644
No 338
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.64 E-value=0.015 Score=66.47 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.8
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|.|||||||||+.+.||+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 339
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.63 E-value=0.02 Score=65.26 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|.|||||||||+.+.||+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999865
No 340
>KOG0482|consensus
Probab=95.62 E-value=0.039 Score=66.26 Aligned_cols=206 Identities=20% Similarity=0.239 Sum_probs=124.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEe-CCCCC--CHhhhhhhccc---------ccccCccccccccccccchh-
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFN-CSEQM--DYRSCGNIYKG---------LAQTGAWGCFDEFNRISVEV- 1499 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n-~~~~~--~~~~l~~~~~g---------~~~~g~w~~~de~~~l~~~~- 1499 (1949)
.++|.|.||+-|+-+.+++.+.--|-++.-- .|.+. ....|.--+.| +...|...|+|||+++...-
T Consensus 377 NicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR 456 (721)
T KOG0482|consen 377 NICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR 456 (721)
T ss_pred eEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh
Confidence 3678999999999999999999888877653 34433 23333322222 24567788999999886542
Q ss_pred ---hHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceec
Q psy2654 1500 ---LSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM 1576 (1949)
Q Consensus 1500 ---ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 1576 (1949)
=+++.||--+|-. .
T Consensus 457 tAIHEVMEQQTISIaK---------------------------------------------------------------A 473 (721)
T KOG0482|consen 457 TAIHEVMEQQTISIAK---------------------------------------------------------------A 473 (721)
T ss_pred HHHHHHHHhhhhhhhh---------------------------------------------------------------h
Confidence 2233333222210 0
Q ss_pred cceEEEecCeeEEEEeCCCCC---CC------CCChhhHhhcccccccc--cCCHH---HHHHHHHhh------------
Q psy2654 1577 GENIKLVTTVGMFITMNPGYA---GR------AELPENLKALFRPCAMV--VPDFA---LICEIMLVS------------ 1630 (1949)
Q Consensus 1577 ~~~i~~~~~~~~f~tmnp~~~---g~------~~LP~~lk~~fr~v~~~--~pD~~---~i~e~~L~~------------ 1630 (1949)
|-.-.+|..+.|.+.-||-|+ -| -.||.+|.++|--+.++ .||.. .+++.+.+-
T Consensus 474 GI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fe 553 (721)
T KOG0482|consen 474 GINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFE 553 (721)
T ss_pred ccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCC
Confidence 223345667788888899542 22 25899999999887663 45543 233333211
Q ss_pred ----------------hchhhHHHHHHHHHHHHHHHHHHh-cCCCCCCCchhhHHHHHHhhcccccCCC-CCcHHHHHHH
Q psy2654 1631 ----------------EGFQEARLLSRKFITLYSLCKELL-SKQDHYDWGLRAIKSVLVVAGSLKRGDR-QRPEDQVLMR 1692 (1949)
Q Consensus 1631 ----------------~gf~~~~~la~k~~~~~~~~~~~~-s~~~~~~~~lr~l~~vl~~a~~~~~~~~-~~~e~~~l~~ 1692 (1949)
....-+..|+..++..|-.+++.- +..++.--+.|++-.+++.+..+.|-.. +.-+..=+-.
T Consensus 554 pl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~E 633 (721)
T KOG0482|consen 554 PLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNE 633 (721)
T ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 122335668889999997777654 3333333478999999998766544321 1112223455
Q ss_pred HHhhhcCCC
Q psy2654 1693 ALRDFNIPK 1701 (1949)
Q Consensus 1693 a~~~~~~~~ 1701 (1949)
|+|.+-+++
T Consensus 634 ALRLme~sK 642 (721)
T KOG0482|consen 634 ALRLMEMSK 642 (721)
T ss_pred HHHHHHhhh
Confidence 666665554
No 341
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.065 Score=69.93 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1420 CYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
....+..+++.+.- -+++||+|+|||++++.||+.+...
T Consensus 24 i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 24 ITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34456667776544 3488999999999999999999764
No 342
>PRK05642 DNA replication initiation factor; Validated
Probab=95.56 E-value=0.013 Score=67.67 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.+++|+||+|+|||.+.++++....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999987664
No 343
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.55 E-value=0.0062 Score=75.86 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...||+|+||||||||++++++|..+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999999865
No 344
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.55 E-value=0.073 Score=62.34 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=80.5
Q ss_pred HHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHh
Q psy2654 1755 VQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQA 1834 (1949)
Q Consensus 1755 ~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~ 1834 (1949)
.+..+.=...|+.++.||.|+||++++..+|+.+.-......+..+. +-+..+++ .+.|+... ..+=..-+|+..
T Consensus 10 ~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~--~~~HPD~~-~i~p~~~~--~~I~idqiR~l~ 84 (290)
T PRK05917 10 IQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKIS--QKIHPDIH-EFSPQGKG--RLHSIETPRAIK 84 (290)
T ss_pred HHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHh--cCCCCCEE-EEecCCCC--CcCcHHHHHHHH
Confidence 33444445678999999999999999999999873211111111110 00111221 11122110 012233344432
Q ss_pred h----cCC-CCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1835 Q----STG-DGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1835 ~----~~~-~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
. .+. ...+.+|+|+. |..=.++-|++|- +| | ..|+++.+|+-+++...+-|...|||-.+.|.+
T Consensus 85 ~~~~~~p~e~~~kv~ii~~a-d~mt~~AaNaLLK---~L-----E--EPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~ 153 (290)
T PRK05917 85 KQIWIHPYESPYKIYIIHEA-DRMTLDAISAFLK---VL-----E--DPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPM 153 (290)
T ss_pred HHHhhCccCCCceEEEEech-hhcCHHHHHHHHH---Hh-----h--cCCCCeEEEEEeCChhhCcHHHHhcceEEEccc
Confidence 2 222 34577787753 2223355566651 11 1 256788999999999999999999999999986
Q ss_pred C
Q psy2654 1910 Q 1910 (1949)
Q Consensus 1910 ~ 1910 (1949)
.
T Consensus 154 ~ 154 (290)
T PRK05917 154 E 154 (290)
T ss_pred h
Confidence 4
No 345
>KOG0743|consensus
Probab=95.53 E-value=0.037 Score=66.75 Aligned_cols=41 Identities=10% Similarity=0.309 Sum_probs=31.6
Q ss_pred EEEEeCCCCCCChhhhccceE---EEecCCCC-CchhhHHhhhcc
Q psy2654 1884 LLFEISNLRTATPATVSRAGI---LYINPQDL-GWNPYVLSWTDT 1924 (1949)
Q Consensus 1884 ~ifE~~~l~~asPa~vsr~~~---v~~~~~~~-~w~~~~~~w~~~ 1924 (1949)
+||.|......=||.+-+-.| |||+-+.+ ..+-++...|..
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 689999999999999984443 88887774 366677777655
No 346
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.52 E-value=0.011 Score=64.12 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEecCCCChhHHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
|+|.|+||+||||+++-+++.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999988874
No 347
>PRK06526 transposase; Provisional
Probab=95.50 E-value=0.014 Score=67.87 Aligned_cols=86 Identities=14% Similarity=0.197 Sum_probs=51.5
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
.+++++|+||||+|||.+...++......+..+.+ ++..+++..+.. .+.+|-+...+++.. ...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-------~t~~~l~~~l~~---~~~~~~~~~~l~~l~-----~~d 161 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-------ATAAQWVARLAA---AHHAGRLQAELVKLG-----RYP 161 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-------hhHHHHHHHHHH---HHhcCcHHHHHHHhc-----cCC
Confidence 46789999999999999999998776443322222 122233222211 123454555555432 237
Q ss_pred EEEEcCC----CCccchhhHHhhhc
Q psy2654 1843 WMVMDGD----IDPMWIESLNTVMD 1863 (1949)
Q Consensus 1843 Wiv~Dg~----~d~~w~e~ln~~ld 1863 (1949)
.+|+|.. .++.+.+-|..+++
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~ 186 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVS 186 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHH
Confidence 8999943 35666666777775
No 348
>PRK14530 adenylate kinase; Provisional
Probab=95.50 E-value=0.022 Score=65.17 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|+|||||||||+.+.||+.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999877
No 349
>CHL00176 ftsH cell division protein; Validated
Probab=95.47 E-value=0.034 Score=72.96 Aligned_cols=124 Identities=13% Similarity=0.201 Sum_probs=68.7
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc-CCCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS-TGDGP 1841 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~-~~~~~ 1841 (1949)
...||+|+||||+|||++++++|... ...+..++. .++...+. |.-.+.+|+.... ....+
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~-----~~p~i~is~-----s~f~~~~~--------g~~~~~vr~lF~~A~~~~P 276 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSISG-----SEFVEMFV--------GVGAARVRDLFKKAKENSP 276 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-----CCCeeeccH-----HHHHHHhh--------hhhHHHHHHHHHHHhcCCC
Confidence 35689999999999999999998755 122222222 22221111 1112223332222 12234
Q ss_pred cEEEEcCC-------------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccc---eEE
Q psy2654 1842 KWMVMDGD-------------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRA---GIL 1905 (1949)
Q Consensus 1842 ~Wiv~Dg~-------------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~---~~v 1905 (1949)
..|++|.. .+..+-..||.+|..-. | +.-.+++.+|..|......-||.+.++ -.|
T Consensus 277 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d------g--~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I 348 (638)
T CHL00176 277 CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD------G--FKGNKGVIVIAATNRVDILDAALLRPGRFDRQI 348 (638)
T ss_pred cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc------c--ccCCCCeeEEEecCchHhhhhhhhccccCceEE
Confidence 67788842 12334455666662210 1 112345778888888888889988633 456
Q ss_pred EecCCCC
Q psy2654 1906 YINPQDL 1912 (1949)
Q Consensus 1906 ~~~~~~~ 1912 (1949)
+++..+.
T Consensus 349 ~v~lPd~ 355 (638)
T CHL00176 349 TVSLPDR 355 (638)
T ss_pred EECCCCH
Confidence 7775543
No 350
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.012 Score=62.59 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
-|++.|+|||||||..+.||+++.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3799999999999999999999854
No 351
>PRK14528 adenylate kinase; Provisional
Probab=95.44 E-value=0.02 Score=63.58 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|++.|||||||||+.+.|++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 352
>PRK14532 adenylate kinase; Provisional
Probab=95.42 E-value=0.023 Score=63.45 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|+|||||||||+.+.||+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999866
No 353
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.41 E-value=0.012 Score=63.13 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=45.6
Q ss_pred EEecCCCChhHHHHHHHHHHHhccCCCcccccCC----------CccCcccccccccCCCCCc-ccChHHHHHHHHhhcC
Q psy2654 1769 IIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP----------KAVTNDELFGIINPSTREW-KDGLFSCLIREQAQST 1837 (1949)
Q Consensus 1769 l~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p----------~~~~~~el~G~~~~~~~~w-~dG~l~~~~r~~~~~~ 1837 (1949)
|+|||||||||+.+.||+.++ +.++++ .+-...++-..++ .++. -|.++..++++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-------~~~is~~~llr~~~~~~s~~g~~i~~~l~--~g~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-------LVHISVGDLLREEIKSDSELGKQIQEYLD--NGELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-------SEEEEHHHHHHHHHHTTSHHHHHHHHHHH--TTSS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC-------cceechHHHHHHHHhhhhHHHHHHHHHHH--hhccchHHHHHHHHHHHHhhh
Confidence 689999999999999999772 111111 0000011111111 1122 2446777777665544
Q ss_pred CCCCcEEEEcCC-CCccchhhHHhhh
Q psy2654 1838 GDGPKWMVMDGD-IDPMWIESLNTVM 1862 (1949)
Q Consensus 1838 ~~~~~Wiv~Dg~-~d~~w~e~ln~~l 1862 (1949)
.. .+-+|+||- -+..-++.+..++
T Consensus 72 ~~-~~g~ildGfPrt~~Qa~~l~~~~ 96 (151)
T PF00406_consen 72 PC-NRGFILDGFPRTLEQAEALEEIL 96 (151)
T ss_dssp GT-TTEEEEESB-SSHHHHHHHHHHH
T ss_pred cc-cceeeeeeccccHHHHHHHHHHH
Confidence 33 355567984 4666666666655
No 354
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.38 E-value=0.053 Score=66.50 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
+.-|++.|||||||||+++++...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34578999999999999999988764
No 355
>PRK14527 adenylate kinase; Provisional
Probab=95.34 E-value=0.025 Score=63.34 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+++|||||||||+.+.|++.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999866
No 356
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.32 E-value=0.028 Score=68.47 Aligned_cols=143 Identities=21% Similarity=0.247 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCCC---C
Q psy2654 1748 DSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPSTR---E 1820 (1949)
Q Consensus 1748 ~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~~---~ 1820 (1949)
+.+..-..++..+...+.+|+|.|++||||+++.+.+.....+.. ..+..+|-.+++ ..++||.-..... .
T Consensus 13 ~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~--~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~ 90 (326)
T PRK11608 13 NSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAALNENLLDSELFGHEAGAFTGAQK 90 (326)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccC--CCeEEEeCCCCCHHHHHHHHccccccccCCccc
Confidence 344444555666667788999999999999999998875442222 233344444443 3567885321100 0
Q ss_pred cccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-CC------
Q psy2654 1821 WKDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-NL------ 1891 (1949)
Q Consensus 1821 w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-~l------ 1891 (1949)
=.-|.+.. + ..-=+++|+ .++...-+.|-.+++++....+ |..-..+.++|+|+-++ +|
T Consensus 91 ~~~g~l~~----a------~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~s~~~l~~l~~~ 158 (326)
T PRK11608 91 RHPGRFER----A------DGGTLFLDELATAPMLVQEKLLRVIEYGELERV--GGSQPLQVNVRLVCATNADLPAMVAE 158 (326)
T ss_pred ccCCchhc----c------CCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCchhHHHHHHc
Confidence 01243321 1 112378885 4677778888889988764333 43346777899999763 33
Q ss_pred CCCChhhhccceE
Q psy2654 1892 RTATPATVSRAGI 1904 (1949)
Q Consensus 1892 ~~asPa~vsr~~~ 1904 (1949)
....+....|++.
T Consensus 159 g~f~~dL~~~l~~ 171 (326)
T PRK11608 159 GKFRADLLDRLAF 171 (326)
T ss_pred CCchHHHHHhcCC
Confidence 2344666667644
No 357
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.32 E-value=0.052 Score=72.29 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..++|+||||+||||+.+++++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999865
No 358
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.32 E-value=0.018 Score=69.84 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.9
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ 1467 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~ 1467 (1949)
.+.+++||+|||||++++.||+.+|.|++.++++.-
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 567799999999999999999999999999998753
No 359
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0088 Score=72.55 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=76.0
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHHH--------------hccC-----C-C---cccccCCCccCccccccc
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYV--------------NAKK-----K-P---MYNDLEPKAVTNDELFGI 1813 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~--------------~~~~-----~-~---~~~~i~p~~~~~~el~G~ 1813 (1949)
|..+....|+++++||||||||.+++-|...+- ...+ . . .-.+--|.+.|...|.|.
T Consensus 191 leiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGG 270 (490)
T COG0606 191 LEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGG 270 (490)
T ss_pred HHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCC
Confidence 344556789999999999999999987754320 1111 0 0 111223455777888887
Q ss_pred ccCCCCCcccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe
Q psy2654 1814 INPSTREWKDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI 1888 (1949)
Q Consensus 1814 ~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~ 1888 (1949)
+ +.-..|-++.+ .+--+.||. ......+|+|..=|++++..----|-.+..|-+|-+++.+
T Consensus 271 G----~~p~PGeIsLA----------H~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~Am 333 (490)
T COG0606 271 G----GVPRPGEISLA----------HNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAM 333 (490)
T ss_pred C----CCCCCCceeee----------cCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhc
Confidence 6 33445544432 113467784 4467788888888888776555556668888888877765
No 360
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.28 E-value=0.0074 Score=76.31 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=66.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
.+++|+||||+|||.+.++++..+........+..++.... ..++...+. .|-........ ......+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f-~~~~~~~~~-------~~~~~~f~~~~----~~~~dvL 198 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-LNDLVDSMK-------EGKLNEFREKY----RKKVDVL 198 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHHHHh-------cccHHHHHHHH----HhcCCEE
Confidence 57999999999999999999987744322222222221110 111222211 11111111111 1123789
Q ss_pred EEcCCC---C-----ccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce---EEEecCCCC
Q psy2654 1845 VMDGDI---D-----PMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG---ILYINPQDL 1912 (1949)
Q Consensus 1845 v~Dg~~---d-----~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~---~v~~~~~~~ 1912 (1949)
++|.+- + ..+.+.+|.+.+.++.+.+.+.. + ..++....|..+||+. ++.+.+.+.
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~----~--------p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR----E--------PQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCC----C--------HHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 999652 2 23555566666655433222211 0 0246677899999997 777776664
No 361
>PRK08116 hypothetical protein; Validated
Probab=95.26 E-value=0.02 Score=67.44 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=46.2
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCH----------hhhhhhcccccccCcccccccc--cccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDY----------RSCGNIYKGLAQTGAWGCFDEF--NRIS 1496 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~----------~~l~~~~~g~~~~g~w~~~de~--~~l~ 1496 (1949)
.|.+++||+|||||.++.++|+.+ |.+++.++.++-++. .....++..+. ....+++||+ +..+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~-~~dlLviDDlg~e~~t 193 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV-NADLLILDDLGAERDT 193 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc-CCCEEEEecccCCCCC
Confidence 457799999999999999999986 889988886542210 11112333333 4457999999 4444
Q ss_pred chhhHH
Q psy2654 1497 VEVLSV 1502 (1949)
Q Consensus 1497 ~~~ls~ 1502 (1949)
....+.
T Consensus 194 ~~~~~~ 199 (268)
T PRK08116 194 EWAREK 199 (268)
T ss_pred HHHHHH
Confidence 444433
No 362
>PRK09183 transposase/IS protein; Provisional
Probab=95.25 E-value=0.028 Score=65.79 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=47.8
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHH---hcceEEEEeCCCCCC-H------hhhhhhcccccccCccccccccccccc
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKA---IGIMVYVFNCSEQMD-Y------RSCGNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~---lg~~~~~~n~~~~~~-~------~~l~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
+..+...+++||+|||||+++..+|.. -|..+..+++.+-.. . ..+...+......-..+++||+...+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCC
Confidence 455667789999999999999999765 487888887654221 1 112333433333446789999987654
Q ss_pred h
Q psy2654 1498 E 1498 (1949)
Q Consensus 1498 ~ 1498 (1949)
.
T Consensus 179 ~ 179 (259)
T PRK09183 179 S 179 (259)
T ss_pred C
Confidence 4
No 363
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.25 E-value=0.021 Score=64.33 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|.|||||||||+.+.||+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999875
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.23 E-value=0.028 Score=67.47 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPM 1796 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~ 1796 (1949)
+.-|+||||||.||||.+--||..+....++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~k 235 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKK 235 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcc
Confidence 667899999999999999999988763333333
No 365
>PRK08181 transposase; Validated
Probab=95.14 E-value=0.043 Score=64.17 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=53.8
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
..+.+++|+||||+|||.+..+++......+..+.+. +..+|+..+.. .+.+|-+...++... ..
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-------~~~~L~~~l~~---a~~~~~~~~~l~~l~-----~~ 168 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-------RTTDLVQKLQV---ARRELQLESAIAKLD-----KF 168 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-------eHHHHHHHHHH---HHhCCcHHHHHHHHh-----cC
Confidence 3567899999999999999999998764433222221 22345444321 134455555555542 23
Q ss_pred cEEEEcCC----CCccchhhHHhhhc
Q psy2654 1842 KWMVMDGD----IDPMWIESLNTVMD 1863 (1949)
Q Consensus 1842 ~Wiv~Dg~----~d~~w~e~ln~~ld 1863 (1949)
..+|+|.. .++.+.+.|-.+++
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin 194 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELIS 194 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHH
Confidence 78999932 35666667777765
No 366
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.18 Score=59.97 Aligned_cols=140 Identities=12% Similarity=0.163 Sum_probs=83.8
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc---CC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS---TG 1838 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~---~~ 1838 (1949)
...|..+++|+.|.||+++++.+++++.-.... .+++...+ +-+-.+++.+ +.+=..-+|+.... .+
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~----~~~~~~~p--~n~~~~d~~g----~~i~vd~Ir~l~~~~~~~~ 85 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQIT----NLNEQELP--ANIILFDIFD----KDLSKSEFLSAINKLYFSS 85 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCC----CCCCCCCC--cceEEeccCC----CcCCHHHHHHHHHHhccCC
Confidence 356889999999999999999999987211100 01111111 0111112111 01112334443322 12
Q ss_pred ---CCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCCch
Q psy2654 1839 ---DGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWN 1915 (1949)
Q Consensus 1839 ---~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~ 1915 (1949)
...+-+|+|++ +..-.++.|++|.- | | ..|+++.+||-+.+...+-|...|||-+|.+.+-. .
T Consensus 86 ~~~~~~KvvII~~~-e~m~~~a~NaLLK~-----L---E--EPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~---~ 151 (299)
T PRK07132 86 FVQSQKKILIIKNI-EKTSNSLLNALLKT-----I---E--EPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD---Q 151 (299)
T ss_pred cccCCceEEEEecc-cccCHHHHHHHHHH-----h---h--CCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC---H
Confidence 36688999984 33334556666531 1 1 25678889998889999999889999999998643 3
Q ss_pred hhHHhhhccC
Q psy2654 1916 PYVLSWTDTR 1925 (1949)
Q Consensus 1916 ~~~~~w~~~~ 1925 (1949)
..+..||..+
T Consensus 152 ~~l~~~l~~~ 161 (299)
T PRK07132 152 QKILAKLLSK 161 (299)
T ss_pred HHHHHHHHHc
Confidence 5667777654
No 367
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.017 Score=65.58 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=46.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC-CCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST-GDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~-~~~~~ 1842 (1949)
...|+|+||||||||.+.++||+.+ .+.+.+-+.-++|-.-|.|. =.+-++.+++..+.-+- +..+-
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L-----nVPFaiADATtLTEAGYVGE-------DVENillkLlqaadydV~rAerG 164 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL-----NVPFAIADATTLTEAGYVGE-------DVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh-----CCCeeeccccchhhccccch-------hHHHHHHHHHHHcccCHHHHhCC
Confidence 4579999999999999999999988 33333334444444444453 34557888877653221 12234
Q ss_pred EEEEc
Q psy2654 1843 WMVMD 1847 (1949)
Q Consensus 1843 Wiv~D 1847 (1949)
.|.+|
T Consensus 165 IIyID 169 (408)
T COG1219 165 IIYID 169 (408)
T ss_pred eEEEe
Confidence 56667
No 368
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=95.08 E-value=0.037 Score=66.40 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=90.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcc----CCCccc-----------------------------cc-CCCccCcccc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAK----KKPMYN-----------------------------DL-EPKAVTNDEL 1810 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~----~~~~~~-----------------------------~i-~p~~~~~~el 1810 (1949)
-||+|-|+.|.||||++++|+..+.... -...++ .+ -|-..|-+.+
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 4899999999999999999998762111 011111 12 2444444559
Q ss_pred cccccCC------CCCcccChHHHHHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCc
Q psy2654 1811 FGIINPS------TREWKDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSM 1882 (1949)
Q Consensus 1811 ~G~~~~~------~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~ 1882 (1949)
.|++|+. ...++.|+|.++=|.. +-+| +.+|+.....|-.++..+....=..|-.+..|-++
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGI----------lYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~f 188 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGI----------LYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARF 188 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCE----------EEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccE
Confidence 9999852 2248888887765443 7889 56688888888888877655556677777777776
Q ss_pred eEEEEeCCCC--CCChhhhccceEEEe
Q psy2654 1883 RLLFEISNLR--TATPATVSRAGILYI 1907 (1949)
Q Consensus 1883 ~~ifE~~~l~--~asPa~vsr~~~v~~ 1907 (1949)
++.-|.|.. .+.|-..-|+|+---
T Consensus 189 -vligTmNPEeGeLrpqLlDRfg~~v~ 214 (423)
T COG1239 189 -LLIGTMNPEEGELRPQLLDRFGLEVD 214 (423)
T ss_pred -EEEeecCccccccchhhHhhhcceee
Confidence 555666654 588999999987653
No 369
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.07 E-value=0.022 Score=64.15 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred CCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhccccchhhcccCccccccccccchhhHHHHHHHHHHHHH--
Q psy2654 1047 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL-- 1124 (1949)
Q Consensus 1047 ~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~-- 1124 (1949)
..++||+|.|||++..-+|..+|.-+.+.+-.-.-..-.+..++.+ ...|..+.+||+.|++..+-+++-..++++.
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~-Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD 133 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTN-LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD 133 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhc-CCcCCeEEEehhhhcChhHHHHhhhhhhheeEE
Confidence 3578999999999999999999998887766554445555566665 5678899999999999998888877777653
Q ss_pred ---------HHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhcccccccc-CchhHHHHHhhhc
Q psy2654 1125 ---------DSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVV-PDFALICEIMLVS 1191 (1949)
Q Consensus 1125 ---------~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~-pd~~~i~~~~l~~ 1191 (1949)
.+.|...|.|.++|-+ ...| .|..-|+..|--+..+. ...+.+.+|..-+
T Consensus 134 I~IG~gp~Arsv~ldLppFTLIGAT------------Tr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~ 193 (332)
T COG2255 134 IIIGKGPAARSIRLDLPPFTLIGAT------------TRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRS 193 (332)
T ss_pred EEEccCCccceEeccCCCeeEeeec------------cccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHH
Confidence 1223334556655532 2222 56777888887776554 2444444444333
No 370
>PRK08233 hypothetical protein; Provisional
Probab=95.05 E-value=0.023 Score=63.23 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|.|.|+|||||||+.+.|+..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 457888999999999999999876
No 371
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.03 E-value=0.014 Score=65.73 Aligned_cols=88 Identities=15% Similarity=0.258 Sum_probs=49.7
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCccccccccc------C---------CCCCcccChHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIIN------P---------STREWKDGLFS 1827 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~------~---------~~~~w~dG~l~ 1827 (1949)
....+++.|+|||||||++..+...+. ...+..|||..+- .++-.|+ + ....|.+.++.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r--~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFR--QFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGG--GGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHH--HhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999877652 3334556655433 2221111 1 11227777777
Q ss_pred HHHHHHhhcCCCCCcEEEEcCCC-CccchhhHHhhhcC
Q psy2654 1828 CLIREQAQSTGDGPKWMVMDGDI-DPMWIESLNTVMDD 1864 (1949)
Q Consensus 1828 ~~~r~~~~~~~~~~~Wiv~Dg~~-d~~w~e~ln~~ldd 1864 (1949)
.++.+. .=||+||.. ++.++..+-..+-.
T Consensus 88 ~a~~~~--------~nii~E~tl~~~~~~~~~~~~~k~ 117 (199)
T PF06414_consen 88 YAIENR--------YNIIFEGTLSNPSKLRKLIREAKA 117 (199)
T ss_dssp HHHHCT----------EEEE--TTSSHHHHHHHHHHHC
T ss_pred HHHHcC--------CCEEEecCCCChhHHHHHHHHHHc
Confidence 777765 449999988 56666655444433
No 372
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.02 E-value=0.021 Score=63.81 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+++|||||||||+.+.|++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999866
No 373
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.01 E-value=0.13 Score=58.48 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=68.7
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCC---cccC---hHHHHHH---HH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTRE---WKDG---LFSCLIR---EQ 1833 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~---w~dG---~l~~~~r---~~ 1833 (1949)
...-++++|++|||||+++..|.......- ..+..+.| ...+++++++-|+--. =.|+ .+.+... +.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~--~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~ 87 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITP--EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKY 87 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEec--CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHH
Confidence 335788999999999999999876552211 12222334 2234455544332100 0111 2222222 11
Q ss_pred hh----cCCCCCcEEEEcCCCCccch-hhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEe
Q psy2654 1834 AQ----STGDGPKWMVMDGDIDPMWI-ESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYI 1907 (1949)
Q Consensus 1834 ~~----~~~~~~~Wiv~Dg~~d~~w~-e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~ 1907 (1949)
.. .....+.-||||.-.+...- +.+..++ .+|.+ -++.++|=++.-..++|.+-+-+-.+.+
T Consensus 88 ~~k~~~~k~~~~~LiIlDD~~~~~~k~~~l~~~~--------~~gRH----~~is~i~l~Q~~~~lp~~iR~n~~y~i~ 154 (241)
T PF04665_consen 88 IKKSPQKKNNPRFLIILDDLGDKKLKSKILRQFF--------NNGRH----YNISIIFLSQSYFHLPPNIRSNIDYFII 154 (241)
T ss_pred hhhhcccCCCCCeEEEEeCCCCchhhhHHHHHHH--------hcccc----cceEEEEEeeecccCCHHHhhcceEEEE
Confidence 11 11133568888865442111 1122222 23443 3578999999999999988776666653
No 374
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.01 E-value=0.02 Score=69.50 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=33.3
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM 1468 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~ 1468 (1949)
...+++||+|+|||++++.||+.+|.|++.++|+.-+
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhc
Confidence 4567899999999999999999999999999998644
No 375
>PLN02200 adenylate kinase family protein
Probab=95.00 E-value=0.029 Score=64.60 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|||||||||+.+.||+.+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 376
>KOG0742|consensus
Probab=95.00 E-value=0.03 Score=65.32 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=62.8
Q ss_pred CCccccccchHHHHHHHHHHHh-------ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC--CC---Hhhhhhh
Q psy2654 1409 PRLVITPLTDRCYITLSQSLHL-------NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ--MD---YRSCGNI 1476 (1949)
Q Consensus 1409 ~~~v~t~~t~r~~~~l~~al~~-------~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~--~~---~~~l~~~ 1476 (1949)
..+|+.|..++-+..|+.|-.+ .+..+.+||||||||-.++.||+.-|.-..++...+- +. ...+.++
T Consensus 355 ~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~l 434 (630)
T KOG0742|consen 355 EGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKL 434 (630)
T ss_pred CCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHH
Confidence 4688999999999998887653 3447799999999999999999999987777765552 11 2234556
Q ss_pred cccccc--cCcccccccccc
Q psy2654 1477 YKGLAQ--TGAWGCFDEFNR 1494 (1949)
Q Consensus 1477 ~~g~~~--~g~w~~~de~~~ 1494 (1949)
|.-+.+ .|-.+.+||.+-
T Consensus 435 FDWakkS~rGLllFIDEADA 454 (630)
T KOG0742|consen 435 FDWAKKSRRGLLLFIDEADA 454 (630)
T ss_pred HHHHhhcccceEEEehhhHH
Confidence 665533 366777777663
No 377
>PRK08116 hypothetical protein; Validated
Probab=94.98 E-value=0.02 Score=67.36 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.1
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
.+.|++|+|+||+|||.+..++++.+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999987543
No 378
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.96 E-value=0.035 Score=64.89 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=70.4
Q ss_pred CCccccccchHHHHHHHHHHHhccC-CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhh----hhhhcc--ccc
Q psy2654 1409 PRLVITPLTDRCYITLSQSLHLNMG-GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRS----CGNIYK--GLA 1481 (1949)
Q Consensus 1409 ~~~v~t~~t~r~~~~l~~al~~~~~-~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~----l~~~~~--g~~ 1481 (1949)
-.+|+-+-+-+-+..+.++++..+| .+|+|.+|+||+++++-.|.+.|..++.+..+.+.+.+. |..++. |+-
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~ 87 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIK 87 (268)
T ss_dssp ------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS
T ss_pred cceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhcc
Confidence 4677778888888999999998877 459999999999999999999999999999888877654 455554 333
Q ss_pred ccCccccccccccccchhhHHHHHH
Q psy2654 1482 QTGAWGCFDEFNRISVEVLSVVAVQ 1506 (1949)
Q Consensus 1482 ~~g~w~~~de~~~l~~~~ls~~~~~ 1506 (1949)
....-+.+++-+.....-|..+...
T Consensus 88 ~~~~vfll~d~qi~~~~fLe~in~L 112 (268)
T PF12780_consen 88 GKPTVFLLTDSQIVDESFLEDINSL 112 (268)
T ss_dssp -S-EEEEEECCCSSSCHHHHHHHHH
T ss_pred CCCeEEEecCcccchHhHHHHHHHH
Confidence 3456677788777777777766544
No 379
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.96 E-value=0.034 Score=72.24 Aligned_cols=136 Identities=21% Similarity=0.241 Sum_probs=82.0
Q ss_pred HHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCc----ccccccccC---CCCCcccChHHH
Q psy2654 1756 QLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTN----DELFGIINP---STREWKDGLFSC 1828 (1949)
Q Consensus 1756 ~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~----~el~G~~~~---~~~~w~dG~l~~ 1828 (1949)
++-.+.....+|+|.|++||||+.+.+++.....+. ...+..+|-.+++. .+|||+-.. ...+.+.|+|..
T Consensus 219 ~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~--~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~ 296 (520)
T PRK10820 219 QARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG--KKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ 296 (520)
T ss_pred HHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh
Confidence 334455568899999999999999999976544222 22334455444432 478986421 112355676643
Q ss_pred HHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-CCCC------CChhhh
Q psy2654 1829 LIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-NLRT------ATPATV 1899 (1949)
Q Consensus 1829 ~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-~l~~------asPa~v 1899 (1949)
+= .-=++||+ .+++..-..|-.+|.++..-. -|+.-..+.++|+|+-++ +|.. ..+...
T Consensus 297 a~----------~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~ 364 (520)
T PRK10820 297 AN----------GGSVLLDEIGEMSPRMQAKLLRFLNDGTFRR--VGEDHEVHVDVRVICATQKNLVELVQKGEFREDLY 364 (520)
T ss_pred cC----------CCEEEEeChhhCCHHHHHHHHHHHhcCCccc--CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 21 12388884 567777778888887765332 344445667899999763 3322 345556
Q ss_pred ccceEE
Q psy2654 1900 SRAGIL 1905 (1949)
Q Consensus 1900 sr~~~v 1905 (1949)
.|...+
T Consensus 365 ~rL~~~ 370 (520)
T PRK10820 365 YRLNVL 370 (520)
T ss_pred hhcCee
Confidence 664433
No 380
>KOG3595|consensus
Probab=94.93 E-value=0.4 Score=69.45 Aligned_cols=207 Identities=20% Similarity=0.216 Sum_probs=119.3
Q ss_pred CcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcce-EEEeeCCccchhhhccccchhhc---ccC
Q psy2654 1022 PRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIM-VYVFNCSEQMDYRSCGNIYKGLA---QTG 1097 (1949)
Q Consensus 1022 ~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~-~~~~~~~~~~~~~~~~~~~~g~~---~~g 1097 (1949)
+.+|.|-.+.|.=..+...+..+.+....||+|+|||-++..-....--. ++..|-+-.++......++...+ .+|
T Consensus 105 ~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~~~~~~~~k~~~~ 184 (1395)
T KOG3595|consen 105 DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRSG 184 (1395)
T ss_pred ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHHHHHHHHHHhccc
Confidence 56666777777766676777777889999999999998887765553321 12233322222222222211110 011
Q ss_pred cc---------ccccccccchhhHHHHHHHHHHHHHHHHhhhc--cccccccC-ccccccccceeeecCCCCCCCCCCch
Q psy2654 1098 AW---------GCFDEFNRISVEVLSVVAVQVKSVLDSVKMRK--SRFNFMGE-NIKLVTTVGMFITMNPGYAGRAELPE 1165 (1949)
Q Consensus 1098 ~w---------~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~--~rf~f~~~-~i~l~~~~~~f~t~n~~~~~~~~lp~ 1165 (1949)
.| +.+|++|. ..+.....+ ..++.+|+-. .-||-.+. ......+..++..|||...|+..+|+
T Consensus 185 ~~~~~~~~~~~~f~ddinm---p~~~~yg~q--~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~ 259 (1395)
T KOG3595|consen 185 NYGPPLGKKLVLFVDDINM---PALDKYGDQ--PPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITE 259 (1395)
T ss_pred CCCCCCCceeEEEEeccCC---chhhhcCCc--cHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccH
Confidence 12 23455553 222222111 1222222221 12222222 22334556677889998889999999
Q ss_pred hHhhhccccccccCchhHHHHHh--hhccc-------hhhhhhhhhhHHHHhhhhhhhccc---ccccccccchhhheee
Q psy2654 1166 NLKALFRPCAMVVPDFALICEIM--LVSEG-------FQEARLLSRKFITLYSLCKELLSK---QDHYDWGLRAIKSVLV 1233 (1949)
Q Consensus 1166 ~l~~~fr~i~~~~pd~~~i~~~~--l~~~g-------~~~~~~l~~kl~~~~~~~~~~~s~---~~~~~~glr~~~~v~~ 1233 (1949)
-+...|..+++..|+......|. +...+ ......+...++.+|..+.+-+.. ..||-|.+|.+..++.
T Consensus 260 r~~r~f~~~~~~~~~~~sl~~if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~ 339 (1395)
T KOG3595|consen 260 RFLRHFLIVSLNYPSQESLTQIFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQ 339 (1395)
T ss_pred HHHHHeeeEeeCCCChhhHHHHHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhhee
Confidence 99999999999999866555442 22222 223555777888888776655543 2489999888877654
No 381
>KOG0731|consensus
Probab=94.91 E-value=0.015 Score=75.24 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=35.8
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ 1467 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~ 1467 (1949)
.-..|++|+||+|||||-++|++|.--|.|++.++.|+-
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 346889999999999999999999999999999998884
No 382
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.90 E-value=0.038 Score=66.23 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=25.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
.++.++|+|||||||||+.+.|++.+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999999855
No 383
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=94.87 E-value=0.013 Score=71.33 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=24.6
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEE
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVF 1462 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~ 1462 (1949)
..-.+++|.+||||+.+.++.++...+-+++-
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~ 88 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSVYTS 88 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEEEEE
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceEEEC
Confidence 34467899999999999999988888777554
No 384
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=94.87 E-value=0.041 Score=67.90 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=84.9
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHH---hcceEEEEeCCCCCC---Hhh----hhhhccccccc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKA---IGIMVYVFNCSEQMD---YRS----CGNIYKGLAQT 1483 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~---lg~~~~~~n~~~~~~---~~~----l~~~~~g~~~~ 1483 (1949)
+|.+.+....+-.+-.+...+++.|++||||--.++++=+. -+.|++.+||.---. .+. -.+.|.||...
T Consensus 251 S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~ 330 (560)
T COG3829 251 SPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKG 330 (560)
T ss_pred CHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccC
Confidence 46777888888888888999999999999999887766554 456999999965211 111 24667777777
Q ss_pred CccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHh
Q psy2654 1484 GAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1563 (1949)
Q Consensus 1484 g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~ 1563 (1949)
|-=+.|+. -+|.-+.+|||+.+|.+.-..+-..++.
T Consensus 331 GK~GlfE~------------------------------------------A~gGTLFLDEIgempl~LQaKLLRVLQE-- 366 (560)
T COG3829 331 GKPGLFEL------------------------------------------ANGGTLFLDEIGEMPLPLQAKLLRVLQE-- 366 (560)
T ss_pred CCCcceee------------------------------------------ccCCeEEehhhccCCHHHHHHHHHHHhh--
Confidence 66665532 1234455678777776654333332221
Q ss_pred hhhhhccccceeccceEEEecCeeEEEEeCC
Q psy2654 1564 DSVKMRKSRFNFMGENIKLVTTVGMFITMNP 1594 (1949)
Q Consensus 1564 ~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp 1594 (1949)
..|.--|.+-...-++|+.+++|-
T Consensus 367 -------kei~rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 367 -------KEIERVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred -------ceEEecCCCCceeeEEEEEeccCc
Confidence 222222444445668999999995
No 385
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.028 Score=61.45 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCCCCccc-ChHHHHHHHHhhcCCCC
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPSTREWKD-GLFSCLIREQAQSTGDG 1840 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~~~w~d-G~l~~~~r~~~~~~~~~ 1840 (1949)
-|+|+|||||||||+.+.|++.+.-.. .....+...++. .....-.|- +.++|.+ ++...++..........
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h--lstgd~~r~~~~~~t~lg~~~k~~i-~~g~lv~d~i~~~~v~~rl~~~d~~ 78 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH--LDTGDILRAAIAERTELGEEIKKYI-DKGELVPDEIVNGLVKERLDEADCK 78 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE--EcHhHHhHhhhccCChHHHHHHHHH-HcCCccchHHHHHHHHHHHHhhccc
Confidence 489999999999999999998752110 000011111111 111111111 2234443 45545665544433222
Q ss_pred CcEEEEcCC-CCccchhhHHhhhcC
Q psy2654 1841 PKWMVMDGD-IDPMWIESLNTVMDD 1864 (1949)
Q Consensus 1841 ~~Wiv~Dg~-~d~~w~e~ln~~ldd 1864 (1949)
.=+||||. -...-.+.+.+.|..
T Consensus 79 -~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 79 -AGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred -CeEEEeCCCCcHHHHHHHHHHHHH
Confidence 23556664 466677888877755
No 386
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.83 E-value=0.021 Score=60.65 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+++|||||||||+++.|++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7999999999999999999755
No 387
>PRK08118 topology modulation protein; Reviewed
Probab=94.83 E-value=0.017 Score=62.77 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=28.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeC
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNC 1464 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~ 1464 (1949)
.+++||+|+||||+++.||+.+|.+++-+++
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 4688999999999999999999999887764
No 388
>KOG0739|consensus
Probab=94.82 E-value=0.016 Score=64.84 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=53.2
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhccccc-ccCccccccccccccchh
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGLA-QTGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~~-~~g~w~~~de~~~l~~~~ 1499 (1949)
+|.+|+||+||||+-++|++|---+.-++.+..|+-+ +.+-+.++|.=+. +.-+.+.+||++.++...
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r 241 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSR 241 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCC
Confidence 6788999999999999999999999999998888743 3444455555443 346888889999886554
No 389
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=94.82 E-value=0.021 Score=61.80 Aligned_cols=97 Identities=18% Similarity=0.356 Sum_probs=47.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCccc-------c-cCCCccCcccccccccCCCCCccc-C----hHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYN-------D-LEPKAVTNDELFGIINPSTREWKD-G----LFSCLIR 1831 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~-------~-i~p~~~~~~el~G~~~~~~~~w~d-G----~l~~~~r 1831 (1949)
+-|+|-|+|+|||||+.+.|...+. .+-++ . +.|+.....+ .+++. .++.+ | .+..++.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~----~p~~~l~~D~f~~~~~~~~~~~~~---g~~~~-~~~~~~~~~~~~~~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP----EPWLHLSVDTFVDMMPPGRYRPGD---GLEPA-GDRPDGGPLFRRLYAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS----S-EEEEEHHHHHHHS-GGGGTSTT---SEEEE-TTSEEE-HHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc----CCeEEEecChHHhhcCcccccCCc---ccccc-ccCCchhHHHHHHHHHHH
Confidence 4689999999999999999998651 11111 0 1111111000 01000 01111 2 2233444
Q ss_pred HHhhcCCCCCcEEEEcCCC-Cccc-hhhHHhhhcCCccee
Q psy2654 1832 EQAQSTGDGPKWMVMDGDI-DPMW-IESLNTVMDDNKVLT 1869 (1949)
Q Consensus 1832 ~~~~~~~~~~~Wiv~Dg~~-d~~w-~e~ln~~lddn~~l~ 1869 (1949)
.+..........+|+|+.+ ++.| .+.+..+|++-+++.
T Consensus 74 ~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~ 113 (174)
T PF07931_consen 74 AAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLF 113 (174)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEE
T ss_pred HHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEE
Confidence 4333322334789999665 6666 677888898777654
No 390
>KOG0738|consensus
Probab=94.81 E-value=0.052 Score=63.52 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHHHHHhcC-cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1754 VVQLVELFAVR-HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1754 ~~~l~~~l~~~-~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-++|.-+... +||+++||||+|||.+.+++|..+
T Consensus 234 mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 234 MPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 34556655544 599999999999999999999766
No 391
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.79 E-value=0.18 Score=63.07 Aligned_cols=25 Identities=44% Similarity=0.577 Sum_probs=22.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.+++|+||||+|||++++.+++.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 392
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.78 E-value=0.045 Score=71.09 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=75.9
Q ss_pred HHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCC---CCcccChHHH
Q psy2654 1756 QLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPST---REWKDGLFSC 1828 (1949)
Q Consensus 1756 ~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~---~~w~dG~l~~ 1828 (1949)
++-..-..+.+|+|.|++||||+++.+.+.....+. ...+..+|-.+++ ..+|||.-...- ..-+.|.+..
T Consensus 202 ~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~ 279 (509)
T PRK05022 202 EIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFEL 279 (509)
T ss_pred HHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhh
Confidence 344455567899999999999999999998765332 2234445544443 257898642110 1123344322
Q ss_pred HHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC
Q psy2654 1829 LIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS 1889 (1949)
Q Consensus 1829 ~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~ 1889 (1949)
+ ..--++|| +.+++..-..|-.+|+++..-.+.+. -..+.++|+|+-+.
T Consensus 280 ----a------~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~ 330 (509)
T PRK05022 280 ----A------DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATN 330 (509)
T ss_pred ----c------CCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCC--cceecceEEEEecC
Confidence 1 12458899 45788888888889987765444333 35667899999874
No 393
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.75 E-value=0.052 Score=64.71 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=39.0
Q ss_pred CccccccchHHHHHHHHHHHhccC-CCCCCCCCCChhHHHHHHHHHhc
Q psy2654 1410 RLVITPLTDRCYITLSQSLHLNMG-GAPAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~~~~-~~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
.+..|+...++...+..++....| ++++||+|+|||++++.+++.+.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 356677778888888888876665 55899999999999999999886
No 394
>PRK10536 hypothetical protein; Provisional
Probab=94.73 E-value=0.2 Score=57.27 Aligned_cols=149 Identities=11% Similarity=0.068 Sum_probs=80.8
Q ss_pred cccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHH-Hh--cceEEEEeCCCCCCHhhhhhhcccccccCc--c
Q psy2654 1412 VITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGK-AI--GIMVYVFNCSEQMDYRSCGNIYKGLAQTGA--W 1486 (1949)
Q Consensus 1412 v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~-~l--g~~~~~~n~~~~~~~~~l~~~~~g~~~~g~--w 1486 (1949)
.+.|.+..-.. +..++....-+.+.||+|||||.++.++|. ++ |..-.++=+.+..+.....+++.|-...-. |
T Consensus 56 ~i~p~n~~Q~~-~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 56 PILARNEAQAH-YLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred cccCCCHHHHH-HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 35565554444 444666666777889999999999999998 44 333333335666666667777776543211 1
Q ss_pred --ccccccccc-cchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHh
Q psy2654 1487 --GCFDEFNRI-SVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1563 (1949)
Q Consensus 1487 --~~~de~~~l-~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~ 1563 (1949)
-++|.+..+ ..+- +...+......+.+..-.-+-|-.-...++++||.-.++++.+..+-+
T Consensus 135 ~~pi~D~L~~~~~~~~----------~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt------ 198 (262)
T PRK10536 135 FRPVYDVLVRRLGASF----------MQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT------ 198 (262)
T ss_pred HHHHHHHHHHHhChHH----------HHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh------
Confidence 122222221 1100 000011112223333222222334456788889997777766543332
Q ss_pred hhhhhccccceeccceEEEecCeeEEEEeCC
Q psy2654 1564 DSVKMRKSRFNFMGENIKLVTTVGMFITMNP 1594 (1949)
Q Consensus 1564 ~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp 1594 (1949)
.+.+++.++++-+|
T Consensus 199 -----------------R~g~~sk~v~~GD~ 212 (262)
T PRK10536 199 -----------------RLGENVTVIVNGDI 212 (262)
T ss_pred -----------------hcCCCCEEEEeCCh
Confidence 23567778888776
No 395
>PRK06762 hypothetical protein; Provisional
Probab=94.72 E-value=0.025 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 396
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.66 E-value=0.11 Score=62.88 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=50.2
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCH-hh--------hhhhcccccccCccccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDY-RS--------CGNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~-~~--------l~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
.+.+.+++||+|||||.++.++|+.+ |+.++.++..+-++. .. ....+.. ...-..+++|++.....
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~-l~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL-LINCDLLIIDDLGTEKI 260 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH-hccCCEEEEeccCCCCC
Confidence 34667799999999999999999987 777877776553221 00 0001122 23346789999966543
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q psy2654 1498 EVLSVVAVQVKSVLDSVKM 1516 (1949)
Q Consensus 1498 ~~ls~~~~~~~~i~~~~~~ 1516 (1949)
.-.. .+.+..|.+....
T Consensus 261 t~~~--~~~Lf~iin~R~~ 277 (329)
T PRK06835 261 TEFS--KSELFNLINKRLL 277 (329)
T ss_pred CHHH--HHHHHHHHHHHHH
Confidence 3221 2344455454433
No 397
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.61 E-value=0.019 Score=58.98 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=23.7
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
++.||+|+||||+++.||+.+|-+++
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPVI 28 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 47899999999999999999997765
No 398
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.57 E-value=0.02 Score=65.94 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=26.6
Q ss_pred EEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC
Q psy2654 1769 IIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT 1806 (1949)
Q Consensus 1769 l~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~ 1806 (1949)
++|||||||||.++.+.+.+...+..+.+..++|.+-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~ 38 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVEN 38 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcc
Confidence 58999999999999999998666666667777786653
No 399
>PRK08727 hypothetical protein; Validated
Probab=94.56 E-value=0.065 Score=61.96 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..+++|+||||||||.+.++++....+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999887643
No 400
>PF13245 AAA_19: Part of AAA domain
Probab=94.53 E-value=0.047 Score=50.30 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHhcCcEEEEEecCCCChhH-HHHHHHHHH
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSC-VWKTLYKTY 1788 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt-~~~~La~~~ 1788 (1949)
++..+..++|.||||||||+ +.+.++...
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44423445669999999995 455555444
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.52 E-value=0.055 Score=59.54 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=50.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccc--------cCCCCCcccChHHHHHHHHhhc-
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGII--------NPSTREWKDGLFSCLIREQAQS- 1836 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~--------~~~~~~w~dG~l~~~~r~~~~~- 1836 (1949)
.++++||||+||||+...++..+...+..+.+...++-.....+.++.+ .+...+. | ...+.++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGK-D--PVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCC-C--HHHHHHHHHHHH
Confidence 4789999999999999999988765543333333333221111111111 0000010 1 22222222111
Q ss_pred CCCCCcEEEEcCCC----CccchhhHHhhhc
Q psy2654 1837 TGDGPKWMVMDGDI----DPMWIESLNTVMD 1863 (1949)
Q Consensus 1837 ~~~~~~Wiv~Dg~~----d~~w~e~ln~~ld 1863 (1949)
......+||+|.+- |+.+++.+..+.+
T Consensus 79 ~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~ 109 (173)
T cd03115 79 REENFDVVIVDTAGRLQIDENLMEELKKIKR 109 (173)
T ss_pred HhCCCCEEEEECcccchhhHHHHHHHHHHHh
Confidence 12344689999443 5678888877654
No 402
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.51 E-value=0.048 Score=71.65 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=79.2
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCCC---CcccChHHHH
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPSTR---EWKDGLFSCL 1829 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~~---~w~dG~l~~~ 1829 (1949)
+..+.....+|+|.|++||||+++.+.+.....+. ...+..+|-.+++ ..+|||.-..... ..+-|.+..+
T Consensus 212 ~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a 289 (534)
T TIGR01817 212 ARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELA 289 (534)
T ss_pred HHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccccc
Confidence 33444567899999999999999999998755322 2234445544443 3568886421110 1123333211
Q ss_pred HHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-CCC------CCChhhhc
Q psy2654 1830 IREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-NLR------TATPATVS 1900 (1949)
Q Consensus 1830 ~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-~l~------~asPa~vs 1900 (1949)
..-=++||+ .+++..-..|-.+|++.....+.++ -..+.++|+|+.+. +|. ...+....
T Consensus 290 ----------~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~ 357 (534)
T TIGR01817 290 ----------DGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY 357 (534)
T ss_pred ----------CCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH
Confidence 113388885 4677777888888887664433332 35667899999763 332 23445555
Q ss_pred cceEE
Q psy2654 1901 RAGIL 1905 (1949)
Q Consensus 1901 r~~~v 1905 (1949)
|+..+
T Consensus 358 rl~~~ 362 (534)
T TIGR01817 358 RINVV 362 (534)
T ss_pred HhcCC
Confidence 65543
No 403
>PRK13949 shikimate kinase; Provisional
Probab=94.51 E-value=0.025 Score=61.61 Aligned_cols=23 Identities=30% Similarity=0.736 Sum_probs=21.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|+|+|||||||+.+.||+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999877
No 404
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.074 Score=64.77 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=23.9
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..+..++|+||||+||||++..||..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998653
No 405
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.48 E-value=0.024 Score=71.69 Aligned_cols=125 Identities=14% Similarity=0.277 Sum_probs=64.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
..+++|+||||+|||.+.++++..+........+..++.... ..++.+.+ .++......+.. . ....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~-~~~~~~~~-------~~~~~~~~~~~~-~----~~dl 202 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF-TNDFVNAL-------RNNKMEEFKEKY-R----SVDL 202 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH-HHHHHHHH-------HcCCHHHHHHHH-H----hCCE
Confidence 357999999999999999999988754322222333332111 11122221 122222222221 1 1268
Q ss_pred EEEcCC--C--C----ccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce---EEEecCCCC
Q psy2654 1844 MVMDGD--I--D----PMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG---ILYINPQDL 1912 (1949)
Q Consensus 1844 iv~Dg~--~--d----~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~---~v~~~~~~~ 1912 (1949)
+++|.. + . ..+...+|.+.+.++.+.+.+.. + ..++....|.+.||++ .|.+.+.+.
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~----~--------p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR----P--------PKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC----C--------HHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 999943 1 1 12344455555544432222111 0 1235567789999994 577877664
Q ss_pred C
Q psy2654 1913 G 1913 (1949)
Q Consensus 1913 ~ 1913 (1949)
.
T Consensus 271 ~ 271 (405)
T TIGR00362 271 E 271 (405)
T ss_pred H
Confidence 3
No 406
>KOG0728|consensus
Probab=94.47 E-value=0.086 Score=57.54 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC
Q psy2654 1427 SLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE 1466 (1949)
Q Consensus 1427 al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~ 1466 (1949)
.+.+..|++|+||+|||||-+++++|...-..++++..|+
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 4556789999999999999999999999999999988776
No 407
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.46 E-value=0.057 Score=55.47 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1753 KVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1753 k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
-..+|...+..+..|+|.|+.|+||||+++.+++.+.
T Consensus 11 l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 11 FGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3445666677778899999999999999999999873
No 408
>KOG1533|consensus
Probab=94.46 E-value=0.029 Score=61.05 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=74.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCc--------cCcccccccccCCC--CCcccChHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKA--------VTNDELFGIINPST--REWKDGLFSCLIREQ 1833 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~--------~~~~el~G~~~~~~--~~w~dG~l~~~~r~~ 1833 (1949)
..|.+++|||||||||-+.-..+.++..+.+.-++.++|.. +++.++.+.-+-.. +---.|-+.-.|...
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l 81 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYL 81 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHH
Confidence 35789999999999999888888887777666666666643 33334433211000 000012222222211
Q ss_pred h--------hcCCCCCcEEEEcCCCCccch---hhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccc
Q psy2654 1834 A--------QSTGDGPKWMVMDGDIDPMWI---ESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRA 1902 (1949)
Q Consensus 1834 ~--------~~~~~~~~Wiv~Dg~~d~~w~---e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~ 1902 (1949)
. +..+...+.++||.|-..+.- .+++.++..= -.+|=|+..-+-+-..+=++.-+.+|-..+|-.
T Consensus 82 ~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~L----ek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~ 157 (290)
T KOG1533|consen 82 EANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKL----EKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLA 157 (290)
T ss_pred HhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHH----HHcCceEEEEEeeeceeeCChHHHHHHHHHHHH
Confidence 1 011234589999987643311 2333333110 001222211111112333444455666777778
Q ss_pred eEEEecCCCCCc
Q psy2654 1903 GILYINPQDLGW 1914 (1949)
Q Consensus 1903 ~~v~~~~~~~~w 1914 (1949)
+|+.|+-..+.-
T Consensus 158 tMl~melphVNv 169 (290)
T KOG1533|consen 158 TMLHMELPHVNV 169 (290)
T ss_pred HHHhhcccchhh
Confidence 888887665543
No 409
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.45 E-value=0.027 Score=61.84 Aligned_cols=87 Identities=17% Similarity=0.337 Sum_probs=51.4
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
...++++|+||||+|||.+..+++......+..+.+ ++..+|+..+.. .+.+|-..+.++.....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f-------~~~~~L~~~l~~---~~~~~~~~~~~~~l~~~----- 109 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLF-------ITASDLLDELKQ---SRSDGSYEELLKRLKRV----- 109 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE-------EEHHHHHHHHHC---CHCCTTHCHHHHHHHTS-----
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeE-------eecCceeccccc---cccccchhhhcCccccc-----
Confidence 456899999999999999999999876553222222 234456655532 24455555566655322
Q ss_pred cEEEEc--CC--CCccchhhHHhhhc
Q psy2654 1842 KWMVMD--GD--IDPMWIESLNTVMD 1863 (1949)
Q Consensus 1842 ~Wiv~D--g~--~d~~w~e~ln~~ld 1863 (1949)
.-+|+| |. .+....+.|-.++|
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~ 135 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIID 135 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHH
T ss_pred cEecccccceeeecccccccchhhhh
Confidence 679999 32 34445555555654
No 410
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.39 E-value=0.29 Score=57.74 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=28.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP 1802 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p 1802 (1949)
.+.++++||||+||||++..||..+...+.++.+...++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 357899999999999999999988755443343333343
No 411
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.33 Score=59.48 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=50.2
Q ss_pred CccccccchHHHHHHHHHHHh-----ccCCCCCCCCCCChhHHHHHHHHHhcceEE---EEeCCCCCCHhhhhhhccccc
Q psy2654 1410 RLVITPLTDRCYITLSQSLHL-----NMGGAPAGPAGTGKTETTKDLGKAIGIMVY---VFNCSEQMDYRSCGNIYKGLA 1481 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~-----~~~~~l~G~~g~GKt~~v~~la~~lg~~~~---~~n~~~~~~~~~l~~~~~g~~ 1481 (1949)
.||.+|..+..+. ++.++.. ..|..++||+|.|||.++++++........ ++..+. ...+..+...+.
T Consensus 88 nFv~g~~N~~A~a-a~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s---e~f~~~~v~a~~ 163 (408)
T COG0593 88 NFVVGPSNRLAYA-AAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS---EDFTNDFVKALR 163 (408)
T ss_pred heeeCCchHHHHH-HHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH---HHHHHHHHHHHH
Confidence 5777777555544 4444444 445569999999999999999887654332 333222 112222222222
Q ss_pred c----------cCccccccccccccch
Q psy2654 1482 Q----------TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1482 ~----------~g~w~~~de~~~l~~~ 1498 (1949)
. +-.-+|+|+++.+...
T Consensus 164 ~~~~~~Fk~~y~~dlllIDDiq~l~gk 190 (408)
T COG0593 164 DNEMEKFKEKYSLDLLLIDDIQFLAGK 190 (408)
T ss_pred hhhHHHHHHhhccCeeeechHhHhcCC
Confidence 2 3456788888776554
No 412
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.36 E-value=0.02 Score=73.40 Aligned_cols=123 Identities=15% Similarity=0.279 Sum_probs=64.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
.+++|+||||+|||.+.++++..+........+..++.... ..++.+.+. ++......... .....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~-~~~~~~~~~-------~~~~~~~~~~~-----~~~dlL 215 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF-TNDFVNALR-------NNTMEEFKEKY-----RSVDVL 215 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH-HHHHHHHHH-------cCcHHHHHHHH-----hcCCEE
Confidence 57999999999999999999988754322222222322221 122222221 12222222211 123689
Q ss_pred EEcCC--C--Cc----cchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce---EEEecCCCC
Q psy2654 1845 VMDGD--I--DP----MWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG---ILYINPQDL 1912 (1949)
Q Consensus 1845 v~Dg~--~--d~----~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~---~v~~~~~~~ 1912 (1949)
++|.. + .. .....+|.+.+.++.+.+.+.. || .+|....|++.||+. ++.+.+.+.
T Consensus 216 iiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~----~p--------~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 216 LIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR----PP--------KELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC----CH--------HHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 99943 1 22 3445556666655433222211 11 224456789999994 566665543
No 413
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.36 E-value=0.14 Score=58.71 Aligned_cols=131 Identities=12% Similarity=0.098 Sum_probs=77.6
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhcc-CCC-----cccccCCCccCcccccccccCCCCCcccChHHHHHHHHhh
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK-KKP-----MYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQ 1835 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~-~~~-----~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~ 1835 (1949)
...|+.+++||+|+||..++..+|+++.=.. ..+ .+..+.... ..+++= +.|.. ..+-..-+|+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~--HPDl~~-i~p~~----~~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGK--YNDFYL-IFDQK----NPIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCC--CCCEEE-ecCCc----ccCCHHHHHHHHH
Confidence 3578999999999999999999998872111 110 011111111 111111 01111 1233344444332
Q ss_pred ----cC--CCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecC
Q psy2654 1836 ----ST--GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINP 1909 (1949)
Q Consensus 1836 ----~~--~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~ 1909 (1949)
.+ ....+.+|+|+. |..=.++-|++|- .| | ..|+++.+|+-+++...+-|..+|||-.+++.+
T Consensus 78 ~l~~~s~e~~~~KV~II~~a-e~m~~~AaNaLLK---~L-----E--EPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~ 146 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGI-EKLNKQSANSLLK---LI-----E--EPPKNTYGIFTTRNENNILNTILSRCVQYVVLS 146 (261)
T ss_pred HHccCchhcCCCEEEEeccH-hhhCHHHHHHHHH---hh-----c--CCCCCeEEEEEECChHhCchHhhhheeeeecCC
Confidence 22 134688888863 2223356677762 11 1 256788899999999999999999999999865
Q ss_pred C
Q psy2654 1910 Q 1910 (1949)
Q Consensus 1910 ~ 1910 (1949)
.
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 4
No 414
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.35 E-value=0.36 Score=59.93 Aligned_cols=138 Identities=13% Similarity=0.255 Sum_probs=70.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCC---ccCc----c-----cccccccCCCCCcccChHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPK---AVTN----D-----ELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~---~~~~----~-----el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
..|+++|++||||||++..||..+...+.++.+...+|- ++.. . .+|+.+.. .| ...+.++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~-----~d--p~~i~~~ 173 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTE-----SD--PVKIASE 173 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCC-----CC--HHHHHHH
Confidence 468999999999999999999887654444443333331 1110 0 11222111 01 1222222
Q ss_pred Hhhc-CCCCCcEEEEc--CCC--CccchhhHHhhhc---CCc-ceeccC--Cc-------ee-ecCCCceEEEEeCCCCC
Q psy2654 1833 QAQS-TGDGPKWMVMD--GDI--DPMWIESLNTVMD---DNK-VLTLAS--NE-------RI-ALTPSMRLLFEISNLRT 1893 (1949)
Q Consensus 1833 ~~~~-~~~~~~Wiv~D--g~~--d~~w~e~ln~~ld---dn~-~l~l~~--ge-------~i-~~~~~~~~ifE~~~l~~ 1893 (1949)
+... .......|++| |.. |..+++.|..+.+ ... .|.+.. |+ .+ ..-+-..+|+.=-|-+.
T Consensus 174 ~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 174 GVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGHA 253 (429)
T ss_pred HHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCCC
Confidence 2211 12345889999 333 6678888877654 222 233322 21 11 11122345554333221
Q ss_pred -----CChhhhccceEEEecC
Q psy2654 1894 -----ATPATVSRAGILYINP 1909 (1949)
Q Consensus 1894 -----asPa~vsr~~~v~~~~ 1909 (1949)
.|-+..+.+.+.|+..
T Consensus 254 rgG~aLs~~~~t~~PI~fig~ 274 (429)
T TIGR01425 254 KGGGALSAVAATKSPIIFIGT 274 (429)
T ss_pred CccHHhhhHHHHCCCeEEEcC
Confidence 3455567888888875
No 415
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.33 E-value=0.05 Score=64.65 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=37.7
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCC------cccccCCCccCccccccccc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP------MYNDLEPKAVTNDELFGIIN 1815 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~------~~~~i~p~~~~~~el~G~~~ 1815 (1949)
...||++.||||+||||..++||.-++..++.+ +--.+.|.-.-...++|.+.
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsPRDl~v~~eITQYs~l~g~me 320 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESPRDLQVSPEITQYSPLEGDME 320 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCcccccCChhhhhcccccCchh
Confidence 357999999999999999999999997765422 22234444444466777653
No 416
>PRK12377 putative replication protein; Provisional
Probab=94.30 E-value=0.056 Score=62.41 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=41.4
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHh--------hhhhhcccccccCccccccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYR--------SCGNIYKGLAQTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~--------~l~~~~~g~~~~g~w~~~de~~~l 1495 (1949)
.+.++.||+|||||.++.++|+.+ |+.++.++..+-++.- ....++.. ...-..+++||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~-l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE-LCKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH-hcCCCEEEEcCCCCC
Confidence 345689999999999999999988 5667766664422100 11122222 346678999999543
No 417
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.29 E-value=0.041 Score=62.49 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=24.7
Q ss_pred hcCcE-EEEEecCCCChhHHHHHHHHHHHhccC
Q psy2654 1762 AVRHS-VFIIGFAGTGKSCVWKTLYKTYVNAKK 1793 (1949)
Q Consensus 1762 ~~~~~-vll~G~~gsGKTt~~~~La~~~~~~~~ 1793 (1949)
...+| |++.|||||||||.+.++...+|+...
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~ 154 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKA 154 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCC
Confidence 34444 788899999999999888888865443
No 418
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.29 E-value=0.035 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|.|+|||||||+.+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 419
>KOG2004|consensus
Probab=94.24 E-value=0.046 Score=68.71 Aligned_cols=127 Identities=19% Similarity=0.232 Sum_probs=80.5
Q ss_pred CCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc------------cccchhhccc---CccccccccccchhhH
Q psy2654 1048 APAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC------------GNIYKGLAQT---GAWGCFDEFNRISVEV 1112 (1949)
Q Consensus 1048 ~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~------------~~~~~g~~~~---g~w~~fde~~~l~~~~ 1112 (1949)
+..||+|.|||+..+.+|++|||-|+.|+-.--.|...+ |++..|+-.+ +--.++||++.+....
T Consensus 442 Cf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~ 521 (906)
T KOG2004|consen 442 CFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGH 521 (906)
T ss_pred EEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCC
Confidence 578999999999999999999999999998766664443 4444444333 3477899999887544
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccC
Q psy2654 1113 LSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVP 1179 (1949)
Q Consensus 1113 Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~p 1179 (1949)
--.=+..|-.++|--+...--=+++.--+++.. .-|..|.|. ...||+.|+....-|.+.-.
T Consensus 522 qGDPasALLElLDPEQNanFlDHYLdVp~DLSk-VLFicTAN~----idtIP~pLlDRMEvIelsGY 583 (906)
T KOG2004|consen 522 QGDPASALLELLDPEQNANFLDHYLDVPVDLSK-VLFICTANV----IDTIPPPLLDRMEVIELSGY 583 (906)
T ss_pred CCChHHHHHHhcChhhccchhhhccccccchhh-eEEEEeccc----cccCChhhhhhhheeeccCc
Confidence 333344455555544332111122232223222 223456666 35899999888777766543
No 420
>KOG0480|consensus
Probab=94.23 E-value=0.05 Score=67.52 Aligned_cols=170 Identities=20% Similarity=0.288 Sum_probs=102.1
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhh----------h--hcccc--cccCcccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG----------N--IYKGL--AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~----------~--~~~g~--~~~g~w~~~de~~~l~ 1496 (1949)
-..++++|.|||||+-..|+.+..+-|-+++--- .++.+.|. - +=.|| ...+...|+|||+++.
T Consensus 378 Dinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGk--aSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd 455 (764)
T KOG0480|consen 378 DINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGK--ASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMD 455 (764)
T ss_pred CceEEEeCCCCccHHHHHHHHhccCCcceEecCc--ccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccC
Confidence 3347799999999999999999999998887532 22222221 0 11233 4456778999999997
Q ss_pred c----hhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcccc
Q psy2654 1497 V----EVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSR 1572 (1949)
Q Consensus 1497 ~----~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~ 1572 (1949)
. ...+++-||--+| ++.
T Consensus 456 ~~dqvAihEAMEQQtISI----------------------aKA------------------------------------- 476 (764)
T KOG0480|consen 456 VKDQVAIHEAMEQQTISI----------------------AKA------------------------------------- 476 (764)
T ss_pred hHhHHHHHHHHHhheehh----------------------eec-------------------------------------
Confidence 7 2344554443222 111
Q ss_pred ceeccceEEEecCeeEEEEeCC--C-CCCCCCChhhH------hhcccccccccCCHHHHHHHHHhhhchhhHHHHHHHH
Q psy2654 1573 FNFMGENIKLVTTVGMFITMNP--G-YAGRAELPENL------KALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKF 1643 (1949)
Q Consensus 1573 ~~~~~~~i~~~~~~~~f~tmnp--~-~~g~~~LP~~l------k~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~la~k~ 1643 (1949)
|-.=.++.-..|.|.-|| | |.-.+.|-+|+ .++|-=+.+..-|... .....+|+.|
T Consensus 477 ----Gv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE-----------~~D~~ia~hI 541 (764)
T KOG0480|consen 477 ----GVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNE-----------VVDYAIARHI 541 (764)
T ss_pred ----ceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCch-----------HHHHHHHHHH
Confidence 222334555678888899 3 65555555554 4566655554433332 2234566777
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhHHHHHHhhcccc
Q psy2654 1644 ITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLK 1678 (1949)
Q Consensus 1644 ~~~~~~~~~~~s~~~~~~~~lr~l~~vl~~a~~~~ 1678 (1949)
+..-....+....+ ..|.++.++.-+++|...+
T Consensus 542 ld~h~~i~~~~~~~--~~~~~e~vrkYi~yAR~~~ 574 (764)
T KOG0480|consen 542 LDLHRGIDDATERV--CVYTLEQVRKYIRYARNFK 574 (764)
T ss_pred HHHhcccccccccc--ccccHHHHHHHHHHHHhcC
Confidence 77644444433322 4577888888888886443
No 421
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.23 E-value=0.19 Score=61.32 Aligned_cols=39 Identities=28% Similarity=0.184 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhc
Q psy2654 1418 DRCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
+..+..+..++..+..+ +++||+|+||+++++.+|+.+-
T Consensus 12 ~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 12 PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 34555677777765432 4889999999999999999974
No 422
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.20 E-value=0.059 Score=60.65 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
.-|.|.|++||||||+.+.|++.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 458999999999999999999998654
No 423
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.19 E-value=0.041 Score=49.79 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|.+.|+|||||||+.+.|+..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999876
No 424
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.19 E-value=0.03 Score=57.89 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~ 1786 (1949)
-|||+||+|||||||++.|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999875
No 425
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.18 E-value=0.4 Score=62.97 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1418 DRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
+.....+..++..+...+++||+|||||++++.+|+.++..
T Consensus 37 ~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 37 EHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 34555677788888888899999999999999999998753
No 426
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.17 E-value=0.22 Score=58.60 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHhcCcE-EEEEecCCCChhHHHHHHHHHHH
Q psy2654 1757 LVELFAVRHS-VFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1757 l~~~l~~~~~-vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
|.+++...+| |++.|||||||||+++++...+.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3445555554 89999999999999999877663
No 427
>KOG2028|consensus
Probab=94.17 E-value=0.076 Score=61.30 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHhccCCC--CCCCCCCChhHHHHHHHHHhcceEEEE
Q psy2654 1424 LSQSLHLNMGGA--PAGPAGTGKTETTKDLGKAIGIMVYVF 1462 (1949)
Q Consensus 1424 l~~al~~~~~~~--l~G~~g~GKt~~v~~la~~lg~~~~~~ 1462 (1949)
+-.++..++.+. +-||+|||||++++-||..--.+-+.|
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrf 193 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRF 193 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEE
Confidence 344566777655 569999999999999999998884444
No 428
>PF13245 AAA_19: Part of AAA domain
Probab=94.15 E-value=0.063 Score=49.50 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=28.0
Q ss_pred HHHHHHhccCCC-CCCCCCCChhHHH-HHHHHHh------cceEEEEeCCC
Q psy2654 1424 LSQSLHLNMGGA-PAGPAGTGKTETT-KDLGKAI------GIMVYVFNCSE 1466 (1949)
Q Consensus 1424 l~~al~~~~~~~-l~G~~g~GKt~~v-~~la~~l------g~~~~~~n~~~ 1466 (1949)
+..|++ ..+.+ +.||||||||+++ ..++..+ |+.+.++..+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~ 52 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTR 52 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCH
Confidence 344666 55555 4899999999555 5555555 67787775443
No 429
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.13 E-value=0.047 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..+|.||+||||||++.++.-++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988766
No 430
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.13 E-value=0.3 Score=58.71 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.|.-...+..+..++..++. -+++||.|+||+++++++|+.+-.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 47778889999999988664 337899999999999999999854
No 431
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.12 E-value=0.22 Score=56.11 Aligned_cols=101 Identities=23% Similarity=0.356 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
.+.|+|.|+.||||||+++++...+...+ .+++-+....+ + -|..++..... .+ .+.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L------~------------~l~~l~~~l~~--~~-~kF 108 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDL------G------------DLPELLDLLRD--RP-YKF 108 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHh------c------------cHHHHHHHHhc--CC-CCE
Confidence 46799999999999999999998885432 23322222211 1 24555554431 12 355
Q ss_pred EEE-cCC----CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhh
Q psy2654 1844 MVM-DGD----IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPAT 1898 (1949)
Q Consensus 1844 iv~-Dg~----~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~ 1898 (1949)
||| |.. -|+.+ -.|-++||.. .-..|+|+ +|..|+|-.+.-|-+
T Consensus 109 Ilf~DDLsFe~~d~~y-k~LKs~LeGg---------le~~P~Nv-liyATSNRRHLv~E~ 157 (249)
T PF05673_consen 109 ILFCDDLSFEEGDTEY-KALKSVLEGG---------LEARPDNV-LIYATSNRRHLVPES 157 (249)
T ss_pred EEEecCCCCCCCcHHH-HHHHHHhcCc---------cccCCCcE-EEEEecchhhccchh
Confidence 665 532 24443 5677777642 22344444 555565555554444
No 432
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.07 E-value=0.035 Score=60.36 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.4
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.....|.|+||+||||||+++++..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456799999999999999999874
No 433
>KOG0745|consensus
Probab=94.06 E-value=0.035 Score=65.63 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=42.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQA 1834 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~ 1834 (1949)
...|+|+||+|||||-+.++||+.+ .+.+.+.+--.+|-.-|.|. =.+.++.+++..+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGe-------DVEsvi~KLl~~A~ 284 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGE-------DVESVIQKLLQEAE 284 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccc-------cHHHHHHHHHHHcc
Confidence 3569999999999999999999988 44455555555555545553 34567888877654
No 434
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.04 E-value=0.25 Score=60.16 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhc
Q psy2654 1418 DRCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
++....+..++..+..+ +++||.|+|||++++.+|+.+-
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 44555677777766543 4889999999999999999873
No 435
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.04 E-value=0.085 Score=71.44 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=72.2
Q ss_pred HHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCC-C--CcccChHHH
Q psy2654 1756 QLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPST-R--EWKDGLFSC 1828 (1949)
Q Consensus 1756 ~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~-~--~w~dG~l~~ 1828 (1949)
++-.+...+.+|+|.|+||||||++.+.+.....+.+ ..+..+|-.+++ ..++||...... + .-.-|.+.
T Consensus 391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~--~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le- 467 (686)
T PRK15429 391 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNN--RRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE- 467 (686)
T ss_pred HHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCC--CCeEEEecccCChhHhhhhhcCcccccccccccchhhHHH-
Confidence 3444556677999999999999999998876543222 233334433332 356888643210 0 01112221
Q ss_pred HHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe
Q psy2654 1829 LIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI 1888 (1949)
Q Consensus 1829 ~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~ 1888 (1949)
.+ ..-=++||+ .++...-..|-.+|++...-.+.++ -..+.++|+|+-+
T Consensus 468 ---~a------~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t 518 (686)
T PRK15429 468 ---LA------DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAAT 518 (686)
T ss_pred ---hc------CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeC
Confidence 11 113488884 5688888899999988664444333 3566789999887
No 436
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.054 Score=66.55 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=83.2
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccc---cccccCCCCCcccChHHHHHHHHhhcCC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDEL---FGIINPSTREWKDGLFSCLIREQAQSTG 1838 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el---~G~~~~~~~~w~dG~l~~~~r~~~~~~~ 1838 (1949)
....-|-|+|++||||||+++.+++++.-..+.....-..+.+++.+.+ ++.... +-.+|+..+|+.-.-.+
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Q-----r~hlF~~Tlr~NL~lA~ 436 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQ-----RVHLFSGTLRDNLRLAN 436 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhcc-----chHHHHHHHHHHHhhcC
Confidence 3456699999999999999999999874443444444444444443323 222222 23567777777622111
Q ss_pred C----CCcEEEEcCCCCccch----hhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCC
Q psy2654 1839 D----GPKWMVMDGDIDPMWI----ESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1839 ~----~~~Wiv~Dg~~d~~w~----e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~ 1910 (1949)
. ..-|=+++-.-=...+ +.||+-+|+.+. .|+-||+=++. +.-+.+.-..++-+|+.
T Consensus 437 ~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~-~LSGGE~rRLA--------------lAR~LL~dapl~lLDEP 501 (573)
T COG4987 437 PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR-RLSGGERRRLA--------------LARALLHDAPLWLLDEP 501 (573)
T ss_pred CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC-cCCchHHHHHH--------------HHHHHHcCCCeEEecCC
Confidence 1 1112222200000011 345667766554 56777742221 11233444556777766
Q ss_pred CCCchhhHHhhhccCCChhHHHHHHHHHHhhccccc
Q psy2654 1911 DLGWNPYVLSWTDTRESESEKNILMGLFDKLTPRTS 1946 (1949)
Q Consensus 1911 ~~~w~~~~~~w~~~~~~~~~~~~l~~l~~~~~~~~~ 1946 (1949)
..|. .+..|.++|+.+|+..=.+|+
T Consensus 502 TegL-----------D~~TE~~vL~ll~~~~~~kTl 526 (573)
T COG4987 502 TEGL-----------DPITERQVLALLFEHAEGKTL 526 (573)
T ss_pred cccC-----------ChhhHHHHHHHHHHHhcCCeE
Confidence 6553 344578889888877655543
No 437
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.92 E-value=0.097 Score=60.48 Aligned_cols=68 Identities=12% Similarity=0.041 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCcchhHHHHHHhh---cceEEEeeCCccchhhhccccchhhcccCccccccccccchhhHHHHHHHHH
Q psy2654 1046 GGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQV 1120 (1949)
Q Consensus 1046 ~~~~~gp~gtGKt~~~~~la~~l---g~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l 1120 (1949)
+-.+.||+|||||++++.+++.+ |..+++++|.+..... .....+...++|+++.++.+....+...+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~liiDdi~~l~~~~~~~L~~~~ 114 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF-------DFDPEAELYAVDDVERLDDAQQIALFNLF 114 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-------hhcccCCEEEEeChhhcCchHHHHHHHHH
Confidence 34579999999999999999875 6678899987754321 11234567899999998876654444333
No 438
>PHA02624 large T antigen; Provisional
Probab=93.92 E-value=0.2 Score=63.52 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1748 DSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1748 ~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..+..-+..+...+-.+++++++|||||||||++..|++.+
T Consensus 415 ~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L 455 (647)
T PHA02624 415 DVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC 455 (647)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34444445555555667899999999999999999999877
No 439
>KOG0731|consensus
Probab=93.91 E-value=0.079 Score=68.78 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHhcC--cEEEEEecCCCChhHHHHHHHHH
Q psy2654 1756 QLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1756 ~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
+-|+.+..+ +||+|+||||||||.+.++.|..
T Consensus 334 ~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 334 EQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred HHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc
Confidence 346666654 79999999999999999998863
No 440
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.86 E-value=0.082 Score=57.99 Aligned_cols=125 Identities=16% Similarity=0.205 Sum_probs=65.4
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC---c---ccccccccCCCC----CcccChHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT---N---DELFGIINPSTR----EWKDGLFSCLIRE 1832 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~---~---~el~G~~~~~~~----~w~dG~l~~~~r~ 1832 (1949)
....+.|+||+||||||++++++.......+... ++...++ . ..-.|++.+... ...|-+++.-.++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL---IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE---ECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 3567999999999999999999986532222211 1111111 0 111222211110 1111122222222
Q ss_pred Hh---hcCCCCCcEEEEcCCC---CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEE
Q psy2654 1833 QA---QSTGDGPKWMVMDGDI---DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGIL 1905 (1949)
Q Consensus 1833 ~~---~~~~~~~~Wiv~Dg~~---d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v 1905 (1949)
-. ..--..+..+++|.|. |+...+.+..+|..-+ ....+|+-+.++..+ +. ..|+.++
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-------------~~~tii~~sh~~~~~-~~-~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALA-------------KGKTVIVIAHRLSTI-RD-ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-------------CCCEEEEEecCHHHH-Hh-CCEEEEE
Confidence 11 1112345899999875 8888888877774310 124577888887766 33 4454433
No 441
>KOG1532|consensus
Probab=93.86 E-value=0.063 Score=59.72 Aligned_cols=142 Identities=18% Similarity=0.344 Sum_probs=81.9
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCC--------ccCcc------cccccccCCCCCcccChHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPK--------AVTND------ELFGIINPSTREWKDGLFS 1827 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~--------~~~~~------el~G~~~~~~~~w~dG~l~ 1827 (1949)
+.+.+++++|=+||||||..+-|...+...+..+-+..++|. .+++- |..-.|.. +-+-||.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L---GPNGgI~T 93 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL---GPNGGIVT 93 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC---CCCcchhh
Confidence 345678999999999999999998777544443433334443 33321 22222211 22234433
Q ss_pred HH------HHH---HhhcCCCCCcEEEEcCCCC----------ccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe
Q psy2654 1828 CL------IRE---QAQSTGDGPKWMVMDGDID----------PMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI 1888 (1949)
Q Consensus 1828 ~~------~r~---~~~~~~~~~~Wiv~Dg~~d----------~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~ 1888 (1949)
.+ +-+ .........+|+++|-|-. +..+|.|-|. -++=++.-+
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass------------------~ptvv~Yvv 155 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASS------------------FPTVVVYVV 155 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhc------------------CCeEEEEEe
Confidence 21 111 1111223458999995532 1122333222 233478889
Q ss_pred CCCCCCChhhh-c----cceE---------EEecCCCCCchhhHHhhhcc
Q psy2654 1889 SNLRTATPATV-S----RAGI---------LYINPQDLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1889 ~~l~~asPa~v-s----r~~~---------v~~~~~~~~w~~~~~~w~~~ 1924 (1949)
+.....+|+|. | -|+| |-++-.++.=..++.-|+..
T Consensus 156 Dt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~D 205 (366)
T KOG1532|consen 156 DTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTD 205 (366)
T ss_pred cCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHH
Confidence 99999999993 3 3544 44888888888888889854
No 442
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.85 E-value=0.15 Score=58.67 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=50.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCC---------HhhhhhhcccccccCccccccccccccchhh
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMD---------YRSCGNIYKGLAQTGAWGCFDEFNRISVEVL 1500 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~---------~~~l~~~~~g~~~~g~w~~~de~~~l~~~~l 1500 (1949)
|.++.||+|||||+++.++|..+ |+.++.+...+-+. .....+++..+. .-..+++||+......-.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~-~~dlLvIDDig~~~~s~~ 179 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS-NVDLLVIDEIGVQTESRY 179 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc-cCCEEEEeCCCCCCCCHH
Confidence 55699999999999999999998 78888886644221 011223333333 566899999987764322
Q ss_pred HHHHHHHHHHHHH
Q psy2654 1501 SVVAVQVKSVLDS 1513 (1949)
Q Consensus 1501 s~~~~~~~~i~~~ 1513 (1949)
+ ...+..|.+.
T Consensus 180 ~--~~~l~~Ii~~ 190 (244)
T PRK07952 180 E--KVIINQIVDR 190 (244)
T ss_pred H--HHHHHHHHHH
Confidence 2 1344445444
No 443
>PRK06620 hypothetical protein; Validated
Probab=93.85 E-value=0.15 Score=57.79 Aligned_cols=131 Identities=12% Similarity=0.126 Sum_probs=74.9
Q ss_pred CcceecCchhhHHHHHHHHHHH-hcC-----CCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhccccchhhcc
Q psy2654 1022 PRLVITPLTDRCYITLSQSLHL-NMG-----GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQ 1095 (1949)
Q Consensus 1022 ~rlv~tp~~~r~~~~l~~al~~-~~~-----~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~~~~~~g~~~ 1095 (1949)
+.+|..+....+|..+.+.-.. ... -.+.||+|+|||++++.+++..+..+ .......+ ....
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~~~---------~~~~ 84 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFFNE---------EILE 84 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhhch---------hHHh
Confidence 5577777777777666554321 111 36799999999999999998887533 22211111 1112
Q ss_pred cCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhcc---
Q psy2654 1096 TGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFR--- 1172 (1949)
Q Consensus 1096 ~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr--- 1172 (1949)
.....|+|+++++... .+-.+.+..+.... .+.+|.+.....- .+ +.|++.+.
T Consensus 85 ~~d~lliDdi~~~~~~-------~lf~l~N~~~e~g~---------------~ilits~~~p~~l-~l-~~L~SRl~~gl 140 (214)
T PRK06620 85 KYNAFIIEDIENWQEP-------ALLHIFNIINEKQK---------------YLLLTSSDKSRNF-TL-PDLSSRIKSVL 140 (214)
T ss_pred cCCEEEEeccccchHH-------HHHHHHHHHHhcCC---------------EEEEEcCCCcccc-ch-HHHHHHHhCCc
Confidence 3457899999976432 22333333332211 1333333222222 36 56888888
Q ss_pred ccccccCchhHHHHH
Q psy2654 1173 PCAMVVPDFALICEI 1187 (1949)
Q Consensus 1173 ~i~~~~pd~~~i~~~ 1187 (1949)
.+.+..||.+.+..+
T Consensus 141 ~~~l~~pd~~~~~~~ 155 (214)
T PRK06620 141 SILLNSPDDELIKIL 155 (214)
T ss_pred eEeeCCCCHHHHHHH
Confidence 667778888775544
No 444
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.83 E-value=0.038 Score=61.95 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+.-|-|+||+||||||+.+++|...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4569999999999999999999765
No 445
>PRK08181 transposase; Validated
Probab=93.82 E-value=0.074 Score=62.23 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=53.1
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCH-------hhhhhhcccccccCccccccccccccc
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDY-------RSCGNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~-------~~l~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
+..+.+.+++||+|||||.++.++|..+ |..++.++..+-++. ..+.+.+..+ ..-..+++||+...+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l-~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL-DKFDLLILDDLAYVTK 181 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH-hcCCEEEEeccccccC
Confidence 4466678899999999999999999644 777877776442110 1112222222 2346799999988765
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q psy2654 1498 EVLSVVAVQVKSVLDSVKMR 1517 (1949)
Q Consensus 1498 ~~ls~~~~~~~~i~~~~~~~ 1517 (1949)
.- .-...+..+.+....+
T Consensus 182 ~~--~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 182 DQ--AETSVLFELISARYER 199 (269)
T ss_pred CH--HHHHHHHHHHHHHHhC
Confidence 42 2233455555544333
No 446
>PHA02774 E1; Provisional
Probab=93.81 E-value=0.24 Score=62.58 Aligned_cols=140 Identities=20% Similarity=0.327 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHH
Q psy2654 1749 SFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSC 1828 (1949)
Q Consensus 1749 ~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~ 1828 (1949)
.|...+..+....-.+.+++++||||+|||.+.-.|++.+. ...+..+|-+ ++-| | .
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~--------------s~Fw----L-q 475 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK--------------SHFW----L-Q 475 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc--------------cccc----c-c
Confidence 34444444444444457999999999999999999998762 2222223321 1223 1 1
Q ss_pred HHHHHhhcCCCCCcEEEEcCCCCc--cchh-hHHhhhcCCcceecc----CCceeecCCCceEEEEeCCCCC----CChh
Q psy2654 1829 LIREQAQSTGDGPKWMVMDGDIDP--MWIE-SLNTVMDDNKVLTLA----SNERIALTPSMRLLFEISNLRT----ATPA 1897 (1949)
Q Consensus 1829 ~~r~~~~~~~~~~~Wiv~Dg~~d~--~w~e-~ln~~lddn~~l~l~----~ge~i~~~~~~~~ifE~~~l~~----asPa 1897 (1949)
-+. +.+.+|+|..-.+ .|++ .|..+||.|. +++- +--.+..|| +|+.+ |+.- .=..
T Consensus 476 pl~--------d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~-v~lD~Khk~~~q~k~pP---lIITS-N~d~~~~~~~~y 542 (613)
T PHA02774 476 PLA--------DAKIALLDDATHPCWDYIDTYLRNALDGNP-VSIDCKHKAPVQIKCPP---LLITS-NIDVKAEDRYKY 542 (613)
T ss_pred hhc--------cCCEEEEecCcchHHHHHHHHHHHHcCCCc-ceeeecccCcccccCCC---EEEec-CCCcccchhhHH
Confidence 111 2278999977555 4666 7888888873 2221 122233333 23322 2221 2345
Q ss_pred hhccceEEEecCC--------------CCCchhhHHhhhcc
Q psy2654 1898 TVSRAGILYINPQ--------------DLGWNPYVLSWTDT 1924 (1949)
Q Consensus 1898 ~vsr~~~v~~~~~--------------~~~w~~~~~~w~~~ 1924 (1949)
.-||.-.++|... +-.|++|++..-..
T Consensus 543 L~sRi~~f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~ 583 (613)
T PHA02774 543 LHSRITVFEFPNPFPLDENGNPVFELTDANWKSFFERLWSQ 583 (613)
T ss_pred hhhhEEEEECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHH
Confidence 5788888886532 23699999885443
No 447
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.80 E-value=0.058 Score=64.55 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
|..++..+..+++.|+|||||||++++|+..+.
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 556677788999999999999999999998763
No 448
>KOG1534|consensus
Probab=93.77 E-value=0.046 Score=58.42 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=33.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKA 1804 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~ 1804 (1949)
.+.++++.||+||||||-...+-......+....++.+.|.+
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 356899999999999999999988887666666666665543
No 449
>KOG1970|consensus
Probab=93.76 E-value=0.057 Score=66.15 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=32.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCccccccc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGI 1813 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~ 1813 (1949)
+-.+|.||+||||||.++.|++.+ +.....-+||-.....+.++.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskel----g~~~~Ew~Npi~~~~~~~~h~ 155 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKEL----GYQLIEWSNPINLKEPENLHN 155 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhh----CceeeeecCCccccccccccc
Confidence 467899999999999999999987 222233456655555555543
No 450
>KOG0991|consensus
Probab=93.73 E-value=0.043 Score=59.45 Aligned_cols=68 Identities=26% Similarity=0.319 Sum_probs=52.9
Q ss_pred CCCCCCCChhHHHHHHHHHh-cc----eEEEEeCCCCCCHhhhhhhcccccccC--------ccccccccccccchhhHH
Q psy2654 1436 PAGPAGTGKTETTKDLGKAI-GI----MVYVFNCSEQMDYRSCGNIYKGLAQTG--------AWGCFDEFNRISVEVLSV 1502 (1949)
Q Consensus 1436 l~G~~g~GKt~~v~~la~~l-g~----~~~~~n~~~~~~~~~l~~~~~g~~~~g--------~w~~~de~~~l~~~~ls~ 1502 (1949)
+.||||||||+++..||+.| |. -+..+|.|+.-....+.+-++-.+|.. -.+.+||.+.+......+
T Consensus 53 isGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQA 132 (333)
T KOG0991|consen 53 ISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQA 132 (333)
T ss_pred eeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHH
Confidence 66999999999999999864 52 467889999888888877777766653 346889999887765554
Q ss_pred H
Q psy2654 1503 V 1503 (1949)
Q Consensus 1503 ~ 1503 (1949)
+
T Consensus 133 l 133 (333)
T KOG0991|consen 133 L 133 (333)
T ss_pred H
Confidence 4
No 451
>KOG0991|consensus
Probab=93.73 E-value=0.062 Score=58.32 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-..+++.||||+||||++.+||..+
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHH
Confidence 3468999999999999999999976
No 452
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=93.73 E-value=0.098 Score=67.96 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=95.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCC------CCcccChHHHHHHHHhhcCCC
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPST------REWKDGLFSCLIREQAQSTGD 1839 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~------~~w~dG~l~~~~r~~~~~~~~ 1839 (1949)
||+|-|+.|+||||+++.|+..+.. ...+ +-=|.++|..-|+|+.|-.. ..+..|+|+.+=
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~---~~p~-r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah--------- 93 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPA---GTPL-RRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD--------- 93 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCC---CCCc-ccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---------
Confidence 8999999999999999999987621 1112 23356788899999986311 126677765432
Q ss_pred CCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC----CCCChhhhccceEEEecCCCCC
Q psy2654 1840 GPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL----RTATPATVSRAGILYINPQDLG 1913 (1949)
Q Consensus 1840 ~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l----~~asPa~vsr~~~v~~~~~~~~ 1913 (1949)
+--+++|. ..++..++.|-..|++..+-.--.|..+..|..|-+|- +++- ..++|+.+-|++|. ++-..+.
T Consensus 94 -~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIa-t~~~~~~~~~L~~~lLDRf~l~-v~v~~~~ 170 (584)
T PRK13406 94 -GGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVA-LDEGAEEDERAPAALADRLAFH-LDLDGLA 170 (584)
T ss_pred -CCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEe-cCCChhcccCCCHHhHhheEEE-EEcCCCC
Confidence 24588894 45999999999999988775556888999999986555 4332 34999999999974 4433344
Q ss_pred ch
Q psy2654 1914 WN 1915 (1949)
Q Consensus 1914 w~ 1915 (1949)
+.
T Consensus 171 ~~ 172 (584)
T PRK13406 171 LR 172 (584)
T ss_pred hH
Confidence 33
No 453
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.73 E-value=0.036 Score=55.29 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccch
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~ 1498 (1949)
.++||+|+|||++++.||+.+++.+-.-....-..-..-..++.|-. .-.-+++|||......
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~-~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ-GQPVVIIDDFGQDNDG 64 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC-CCcEEEEeecCccccc
Confidence 57899999999999999999986551111111001111223444444 3355889999988865
No 454
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.72 E-value=0.3 Score=61.88 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=27.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP 1802 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p 1802 (1949)
..++|+||||+|||++++.+++.+........+..+|.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 56999999999999999999987754432333444443
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.71 E-value=0.045 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLY 1785 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La 1785 (1949)
...+.|+||+||||||+.+++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999976
No 456
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.71 E-value=0.16 Score=61.39 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=26.0
Q ss_pred HHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1759 ELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1759 ~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.++..+..++++||+||||||++++|+..+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 355677899999999999999999998765
No 457
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.69 E-value=0.04 Score=65.67 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-+.|+||+||||||+++++|...
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999754
No 458
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=93.68 E-value=0.071 Score=65.91 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCCCCcccCh
Q psy2654 1750 FILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPSTREWKDGL 1825 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~~~w~dG~ 1825 (1949)
+..-+...-..-....+|+|.|+||+||..+.+..-+...+..+ .+..+|=.|+. -.||||+- .|.
T Consensus 254 m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~--PFIaiNCaAiPe~LlESELFGye--------~GA 323 (560)
T COG3829 254 MLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANG--PFIAINCAAIPETLLESELFGYE--------KGA 323 (560)
T ss_pred HHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCC--CeEEEecccCCHHHHHHHHhCcC--------Ccc
Confidence 33333344445556789999999999999998888776644432 34455544444 47899974 344
Q ss_pred HHHHHHHHhhc--CCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe-CCCCC
Q psy2654 1826 FSCLIREQAQS--TGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI-SNLRT 1893 (1949)
Q Consensus 1826 l~~~~r~~~~~--~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~-~~l~~ 1893 (1949)
|+=+.+.|... .-...-=|.|| |+++-..---|-+||-+.....+.+.+ ..|-.+|+|-.| .||..
T Consensus 324 FTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~--~~~vDVRIIAATN~nL~~ 394 (560)
T COG3829 324 FTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTK--PIPVDVRIIAATNRNLEK 394 (560)
T ss_pred ccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCC--ceeeEEEEEeccCcCHHH
Confidence 44444432110 00111237889 777777777788999988887776666 556689999877 34443
No 459
>PRK13695 putative NTPase; Provisional
Probab=93.63 E-value=0.14 Score=56.25 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
-|.|.|++||||||+.+.++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999887654
No 460
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.52 Score=56.56 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.|.-...+..+..++..++.+ ++.||.|+||+++++.+|+.+-.
T Consensus 5 yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 477788889999999877754 48899999999999999998853
No 461
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.61 E-value=0.091 Score=67.22 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+-.+|.|||||||||++++||+.+
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999987
No 462
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=0.66 Score=56.47 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHHhccCC---CCCCCCCCChhHHHHHHHHHhc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~---~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
-|.....+..+.+++..++.+ +++||.|+||++++.++|+.+-
T Consensus 4 yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 377788899999999886653 3889999999999999999974
No 463
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=93.53 E-value=0.45 Score=46.95 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCccCCcCCHHHHHHHHHHHHHHhccccchhhcchhHHHHHHHHHHcCCCCCHHHHHHH
Q psy2654 136 MDSVINSLNELKDFIEEADKGLATPLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQLLKLYDIEFPEETYLML 215 (1949)
Q Consensus 136 ~~~~~~~l~~l~~~i~~~~~~L~~~~~p~~le~l~~~m~~l~~i~~~~~~~e~~~~~i~e~~~lL~~y~v~v~~e~~~~~ 215 (1949)
...+...++++...|......|.....|.+++++...+..+..+..........+..|.+...-|...+-.-++.....+
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 45667788899999999999996554478999999999999999999999999999999999999777777778888899
Q ss_pred hhhHHHHHHHHHHHHhhhhhcc
Q psy2654 216 QELPDRWANTKKIATSVKTAAQ 237 (1949)
Q Consensus 216 ~~l~~~w~~l~~~~~~~~~~l~ 237 (1949)
..+...|..+...+......|.
T Consensus 83 ~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 83 EELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999998888766553
No 464
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.19 Score=65.35 Aligned_cols=182 Identities=19% Similarity=0.258 Sum_probs=107.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEe-CCCCCCHh--hh-----hh-hcc-cc--cccCccccccccccccchhh
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFN-CSEQMDYR--SC-----GN-IYK-GL--AQTGAWGCFDEFNRISVEVL 1500 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n-~~~~~~~~--~l-----~~-~~~-g~--~~~g~w~~~de~~~l~~~~l 1500 (1949)
-++|+|.|||||+.+.+.+++..-+-+++-- +|.+.... .. +. .+. || ...|..+|+|||++++.+.-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr 400 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR 400 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHH
Confidence 3679999999999999999999999887653 33332211 11 11 111 22 34566678888888777655
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceec--cc
Q psy2654 1501 SVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM--GE 1578 (1949)
Q Consensus 1501 s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~ 1578 (1949)
.++-. ++ .+.++.+. |-
T Consensus 401 ~aihE-------aM------------------------------------------------------EQQtIsIaKAGI 419 (682)
T COG1241 401 VAIHE-------AM------------------------------------------------------EQQTISIAKAGI 419 (682)
T ss_pred HHHHH-------HH------------------------------------------------------HhcEeeecccce
Confidence 54311 11 11122222 32
Q ss_pred eEEEecCeeEEEEeCCC---CCCC------CCChhhHhhcccccccc--cCCH---HHHHHHHHhhhc------------
Q psy2654 1579 NIKLVTTVGMFITMNPG---YAGR------AELPENLKALFRPCAMV--VPDF---ALICEIMLVSEG------------ 1632 (1949)
Q Consensus 1579 ~i~~~~~~~~f~tmnp~---~~g~------~~LP~~lk~~fr~v~~~--~pD~---~~i~e~~L~~~g------------ 1632 (1949)
.-.++.-|.+.|.-||. |..+ -.||+.|.++|=-+.+. .||- ..|++.+|...-
T Consensus 420 ~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~ 499 (682)
T COG1241 420 TATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDG 499 (682)
T ss_pred eeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccc
Confidence 33456778899999994 3333 25899999999987764 4443 357777665431
Q ss_pred -----------h-------------hhHHHHHHHHHHHHHHHHHHh---cCCCCCCCchhhHHHHHHhhc
Q psy2654 1633 -----------F-------------QEARLLSRKFITLYSLCKELL---SKQDHYDWGLRAIKSVLVVAG 1675 (1949)
Q Consensus 1633 -----------f-------------~~~~~la~k~~~~~~~~~~~~---s~~~~~~~~lr~l~~vl~~a~ 1675 (1949)
. .-.....+++..+|-..++.- +....+-.+-|.+-++++.+-
T Consensus 500 ~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLae 569 (682)
T COG1241 500 VDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAE 569 (682)
T ss_pred ccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHH
Confidence 1 112224555666666665532 123345566777777777653
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.52 E-value=0.067 Score=59.53 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHhcCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1758 VELFAVRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1758 ~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..++..+..++++||+||||||++++|+....
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34566678899999999999999999998663
No 466
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.51 E-value=0.061 Score=59.99 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=24.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP 1795 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~ 1795 (1949)
+.++++||+|+||||.+--||..+...+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v 32 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKV 32 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--E
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccc
Confidence 4689999999999999999998775443333
No 467
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.49 E-value=0.11 Score=62.67 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.4
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..+.|.|+|++|+|||+++..++...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~ 43 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDL 43 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHH
T ss_pred CeEEEEEEcCCcCCcceeeeeccccc
Confidence 35689999999999999999888663
No 468
>KOG0054|consensus
Probab=93.48 E-value=0.05 Score=75.63 Aligned_cols=118 Identities=25% Similarity=0.386 Sum_probs=72.1
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccc-------------c-cc----ccCCCCCcccC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDEL-------------F-GI----INPSTREWKDG 1824 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el-------------~-G~----~~~~~~~w~dG 1824 (1949)
-+.=|=|||.|||||||++.+|-+.....++...+..++-..+...+| | |. +||- +++.|.
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~ 1243 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDD 1243 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHH
Confidence 345589999999999999999988765444444433333333333222 2 22 2231 245554
Q ss_pred hHHHHHHHHhh-----c-----------------------------CCCCCcEEEEcC---CCCcc--------------
Q psy2654 1825 LFSCLIREQAQ-----S-----------------------------TGDGPKWMVMDG---DIDPM-------------- 1853 (1949)
Q Consensus 1825 ~l~~~~r~~~~-----~-----------------------------~~~~~~Wiv~Dg---~~d~~-------------- 1853 (1949)
-+=.++.++.- . --...+.+|+|. .+|+.
T Consensus 1244 ~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~ 1323 (1381)
T KOG0054|consen 1244 EIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK 1323 (1381)
T ss_pred HHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc
Confidence 44444433210 0 011348999995 35554
Q ss_pred ------chhhHHhhhcCCcceeccCCceeecCCC
Q psy2654 1854 ------WIESLNTVMDDNKVLTLASNERIALTPS 1881 (1949)
Q Consensus 1854 ------w~e~ln~~lddn~~l~l~~ge~i~~~~~ 1881 (1949)
.+.+||+++|-.|+|-|.+|.......+
T Consensus 1324 dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1324 DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred CCeEEEEeeccchhhhcCeEEEeeCCeEeecCCh
Confidence 6788899999999999999987665544
No 469
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.45 E-value=0.077 Score=64.54 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
++|+|+||||||||++.+.||+.+
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999977
No 470
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.44 E-value=0.15 Score=63.17 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHhccCCC--CCCCCCCChhHHHHHHHHHhcce--EEEEeCCCCCCHhhh------hhhcc-cccccCcc
Q psy2654 1418 DRCYITLSQSLHLNMGGA--PAGPAGTGKTETTKDLGKAIGIM--VYVFNCSEQMDYRSC------GNIYK-GLAQTGAW 1486 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~--l~G~~g~GKt~~v~~la~~lg~~--~~~~n~~~~~~~~~l------~~~~~-g~~~~g~w 1486 (1949)
.+.|..+..++....|.. +.||+|||||.+++.+...+... .+.+-++.+.-...+ .+.|. |+..
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~---- 82 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINN---- 82 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccc----
Confidence 567777778887666654 77999999999999998888442 333334443333222 11111 1100
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhh
Q psy2654 1487 GCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLD 1564 (1949)
Q Consensus 1487 ~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~ 1564 (1949)
.+.+.+..+..+ ......+.-+++++||+..++..++..+...+..+..
T Consensus 83 ---~~~~~~~~~~~~--------------------------~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 83 ---NEKSQCKISKNS--------------------------RLRERLRKADVLIIDEISMVSADMLDAIDRRLRDIRK 131 (364)
T ss_pred ---cccccccccccc--------------------------hhhhhhhhheeeecccccchhHHHHHHHHHhhhhhhc
Confidence 011111111111 1122334456778899999999998888777766553
No 471
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.42 E-value=0.062 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.+..++|+||||+|||++++.+++.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 456799999999999999999998774
No 472
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.40 E-value=0.074 Score=63.59 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=28.4
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
|..++..+..+++.|||||||||+.++|+..+.
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 455667788999999999999999999998764
No 473
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.39 E-value=0.046 Score=61.25 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=23.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
++.++|.||||||||++++.+..++...
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 4578889999999999999999888554
No 474
>PRK03839 putative kinase; Provisional
Probab=93.38 E-value=0.056 Score=59.90 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|.|+|||||||+.+.||+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 475
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.37 E-value=0.055 Score=57.38 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.6
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
....-|+++||+||||||+.+.+|..+
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 445679999999999999999999765
No 476
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.35 E-value=0.094 Score=55.70 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1754 VVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1754 ~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
+..|.+.+.. +.++|+|++|+||||+++.|...
T Consensus 26 ~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 26 IEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 3345555666 89999999999999999998753
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.34 E-value=0.055 Score=60.29 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|+||+||||||+.+.|+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998754
No 478
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.34 E-value=0.044 Score=63.45 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=34.9
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhc--ceEEEEeCCCCCC
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIG--IMVYVFNCSEQMD 1469 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg--~~~~~~n~~~~~~ 1469 (1949)
.+.|+++.||+|||||.++-.+|+-|| .|++.++.|+-.+
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 567788999999999999999999999 6888888888544
No 479
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.32 E-value=0.052 Score=57.89 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=21.4
Q ss_pred EEEEecCCCChhHHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
|+++|+|||||||+.+.|+..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 480
>KOG3079|consensus
Probab=93.32 E-value=0.24 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|+++|+|||||=|.+.-++.-+
T Consensus 8 ~~IifVlGGPGsgKgTqC~kiv~ky 32 (195)
T KOG3079|consen 8 PPIIFVLGGPGSGKGTQCEKIVEKY 32 (195)
T ss_pred CCEEEEEcCCCCCcchHHHHHHHHc
Confidence 3468999999999999887777644
No 481
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.32 E-value=0.21 Score=60.21 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE 1801 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~ 1801 (1949)
...++++||+|+||||++..||..+...++.+.+...+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45789999999999999999999886544444333333
No 482
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=93.28 E-value=0.14 Score=68.11 Aligned_cols=130 Identities=17% Similarity=0.121 Sum_probs=75.4
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCccccccc---ccCCCCCcc--cChHHHHHHHHhhc
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGI---INPSTREWK--DGLFSCLIREQAQS 1836 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~---~~~~~~~w~--dG~l~~~~r~~~~~ 1836 (1949)
.....|+|+|+||+|||++.+.+++...+.. +..-.|. +.-.+-+. .++.+++|. -|.+..+
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~----ytsG~~~--s~vgLTa~~~~~d~~tG~~~le~GaLvlA------- 556 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSI----YTSGKSS--SSVGLTASIKFNESDNGRAMIQPGAVVLA------- 556 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccc----cCCCCCC--ccccccchhhhcccccCcccccCCcEEEc-------
Confidence 4456899999999999999999987542110 0000000 00011111 122234453 3433211
Q ss_pred CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceecc-CCceeecCCCceEEEEeCCC-------------CCCChhhhc
Q psy2654 1837 TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLA-SNERIALTPSMRLLFEISNL-------------RTATPATVS 1900 (1949)
Q Consensus 1837 ~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~-~ge~i~~~~~~~~ifE~~~l-------------~~asPa~vs 1900 (1949)
..--+++|.. +++.--..|..+|+...+ ++. .|-...++..+++|-.+.-. -+.+|+.+|
T Consensus 557 ---dgGtL~IDEidkms~~~Q~aLlEaMEqqtI-sI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 557 ---NGGVCCIDELDKCHNESRLSLYEVMEQQTV-TIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred ---CCCeEEecchhhCCHHHHHHHHHHHhCCEE-EEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 1124666743 455555667777766443 443 47778888888888776543 247899999
Q ss_pred cceEEEec
Q psy2654 1901 RAGILYIN 1908 (1949)
Q Consensus 1901 r~~~v~~~ 1908 (1949)
|+-+||+-
T Consensus 633 RFDLIf~l 640 (915)
T PTZ00111 633 RFDLIYLV 640 (915)
T ss_pred hhcEEEEe
Confidence 99998854
No 483
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.27 E-value=0.051 Score=55.82 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1417 TDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1417 t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
|.+.-..++..+..+.-.++.|+.|+|||++++.+++.+|..
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344445555555555556799999999999999999999965
No 484
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.27 E-value=0.14 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
++|+||||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999887754
No 485
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.24 E-value=0.063 Score=59.14 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.4
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
....|+|+|+|||||||+.+.||+.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999977
No 486
>KOG1533|consensus
Probab=93.24 E-value=0.06 Score=58.65 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=32.4
Q ss_pred ccCCCCCCCCCCChhHHHH---HHHHHhcceEEEEeCCCCCC
Q psy2654 1431 NMGGAPAGPAGTGKTETTK---DLGKAIGIMVYVFNCSEQMD 1469 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~---~la~~lg~~~~~~n~~~~~~ 1469 (1949)
.+|-+++||||+||||-+. ++=+++||++.++|.++.-|
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd 43 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAND 43 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCccc
Confidence 4577889999999999884 55678899999999988644
No 487
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.24 E-value=0.037 Score=65.41 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHH----hccCCCCCCCCCCChhHHHHHHHHHhc--ceEEEEeCCCCCC
Q psy2654 1416 LTDRCYITLSQSLH----LNMGGAPAGPAGTGKTETTKDLGKAIG--IMVYVFNCSEQMD 1469 (1949)
Q Consensus 1416 ~t~r~~~~l~~al~----~~~~~~l~G~~g~GKt~~v~~la~~lg--~~~~~~n~~~~~~ 1469 (1949)
-.++..--+..-++ .+++.++.||+|||||.++-++|+.|| .|++.++.|+-.+
T Consensus 31 ~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 31 KAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp HHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred HHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 34444444444444 345678999999999999999999999 7999999888543
No 488
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.20 E-value=0.4 Score=57.54 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
-|.-...+..+..++..++- -+++||.|+||++++..+|+.+-.
T Consensus 6 yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 6 SPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 46677888999999987764 348899999999999999998864
No 489
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.19 E-value=0.16 Score=63.84 Aligned_cols=93 Identities=20% Similarity=0.300 Sum_probs=52.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH-h-ccCCCcccccCCCccC-c------ccccccccCCCCCcccChHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV-N-AKKKPMYNDLEPKAVT-N------DELFGIINPSTREWKDGLFSCLIREQA 1834 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~-~-~~~~~~~~~i~p~~~~-~------~el~G~~~~~~~~w~dG~l~~~~r~~~ 1834 (1949)
...++++||+|+||||++..||..+. . .+.++.+...+|--.. . .+..|. |........-+...+++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~v--p~~~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI--PVEVVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCC--ceEccCCHHhHHHHHHHh-
Confidence 45799999999999999999998775 2 2223333334442110 0 111221 000001111233444432
Q ss_pred hcCCCCCcEEEEcCC----CCccchhhHHhhhc
Q psy2654 1835 QSTGDGPKWMVMDGD----IDPMWIESLNTVMD 1863 (1949)
Q Consensus 1835 ~~~~~~~~Wiv~Dg~----~d~~w~e~ln~~ld 1863 (1949)
....+|++|.+ .|..-++.|..+++
T Consensus 298 ----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 298 ----RDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred ----CCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 23589999944 36677788888887
No 490
>PRK07261 topology modulation protein; Provisional
Probab=93.15 E-value=0.063 Score=58.69 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVF 1462 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~ 1462 (1949)
.+++|++|+||||+++.||..+|-+.+..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 35789999999999999999999886644
No 491
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.11 E-value=0.038 Score=61.89 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-|.|+||+||||||+.+.++..-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4459999999999999999998654
No 492
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.09 E-value=0.34 Score=59.35 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.9
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
.+--|+++|||||||||++++|+..++.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456999999999999999999988743
No 493
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.09 E-value=0.13 Score=61.54 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=51.1
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
...|++|+||+|+|||.+..++|..+...+..+.+. +..+|+..+- ..+.||-+...++... ...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~-------~~~~l~~~lk---~~~~~~~~~~~l~~l~-----~~d 219 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL-------HFPEFIRELK---NSISDGSVKEKIDAVK-----EAP 219 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE-------EHHHHHHHHH---HHHhcCcHHHHHHHhc-----CCC
Confidence 357999999999999999999999886443222222 1123332221 1234454555555442 238
Q ss_pred EEEEc--CCC-Cccch--hhHHhhhcC
Q psy2654 1843 WMVMD--GDI-DPMWI--ESLNTVMDD 1864 (1949)
Q Consensus 1843 Wiv~D--g~~-d~~w~--e~ln~~ldd 1864 (1949)
.+|+| |.. -+.|. +-|..+++.
T Consensus 220 lLiIDDiG~e~~s~~~~~~ll~~Il~~ 246 (306)
T PRK08939 220 VLMLDDIGAEQMSSWVRDEVLGVILQY 246 (306)
T ss_pred EEEEecCCCccccHHHHHHHHHHHHHH
Confidence 89999 422 34454 345666653
No 494
>PRK06921 hypothetical protein; Provisional
Probab=93.07 E-value=0.25 Score=58.16 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=41.7
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHh----cceEEEEeCCCCCCH-----hhhhhhcccccccCcccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAI----GIMVYVFNCSEQMDY-----RSCGNIYKGLAQTGAWGCFDEFNR 1494 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~l----g~~~~~~n~~~~~~~-----~~l~~~~~g~~~~g~w~~~de~~~ 1494 (1949)
..+.+++||+|+|||.++.++|+.+ |..++.+...+.++. ..+...+.. ...-..+++||+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~-~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNR-MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHH-hcCCCEEEEecccc
Confidence 4557799999999999999999986 667777775442221 111122222 23467899999944
No 495
>KOG0737|consensus
Probab=93.04 E-value=0.061 Score=63.09 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=26.7
Q ss_pred HHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1758 VELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1758 ~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...++-..||+|+||||||||.|.+++|+..
T Consensus 121 g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea 151 (386)
T KOG0737|consen 121 GKLLRPPKGILLYGPPGTGKTMLAKAIAKEA 151 (386)
T ss_pred cccccCCccceecCCCCchHHHHHHHHHHHc
Confidence 4556677899999999999999999999854
No 496
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.02 E-value=0.14 Score=61.61 Aligned_cols=97 Identities=8% Similarity=0.077 Sum_probs=54.0
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCc-------cccccc-ccCCCCCcccChHHHHHHHHh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTN-------DELFGI-INPSTREWKDGLFSCLIREQA 1834 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~-------~el~G~-~~~~~~~w~dG~l~~~~r~~~ 1834 (1949)
.+..++++||+||||||++..||..+...+..+.+...+|-.... .+..|- +... -...-+..+++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHHHHHHHHHH
Confidence 356789999999999999999997664433333333344422111 111221 0000 01112334444332
Q ss_pred hcCCCCCcEEEEcCC----CCccchhhHHhhhcC
Q psy2654 1835 QSTGDGPKWMVMDGD----IDPMWIESLNTVMDD 1864 (1949)
Q Consensus 1835 ~~~~~~~~Wiv~Dg~----~d~~w~e~ln~~ldd 1864 (1949)
. ......|++|.+ .|..+++.|..+++.
T Consensus 282 ~--~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~ 313 (407)
T PRK12726 282 Y--VNCVDHILIDTVGRNYLAEESVSEISAYTDV 313 (407)
T ss_pred h--cCCCCEEEEECCCCCccCHHHHHHHHHHhhc
Confidence 1 123478999943 477888888887764
No 497
>PRK14531 adenylate kinase; Provisional
Probab=93.02 E-value=0.077 Score=58.88 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
++-|+++|||||||||+.+.||+.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999876
No 498
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.02 E-value=0.071 Score=59.05 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..++|+|||||||||+.+.|+..+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999876
No 499
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.02 E-value=0.1 Score=62.82 Aligned_cols=32 Identities=16% Similarity=0.446 Sum_probs=27.7
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|..++..+..+++.|+|||||||+.++|+..+
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44566778899999999999999999999765
No 500
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.062 Score=68.43 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=50.4
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccc-cccCccccccccccccch
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGL-AQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~-~~~g~w~~~de~~~l~~~ 1498 (1949)
....|++++||+|||||.++|+.|.-.|.|++.+..|+-.. .+...-.|..+ .+.-|.+.+||++.....
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~ 257 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQ 257 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccc
Confidence 67789999999999999999999999999999888777322 22222233333 234567777777765443
Done!