Query psy2654
Match_columns 1949
No_of_seqs 415 out of 2252
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:50:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 6E-168 2E-172 1795.4 63.8 1012 293-1926 22-1072(3245)
2 4akg_A Glutathione S-transfera 100.0 5E-146 2E-150 1573.8 67.8 877 481-1944 216-1115(2695)
3 3vkg_A Dynein heavy chain, cyt 100.0 8.9E-78 3E-82 863.9 46.3 837 999-1909 559-1812(3245)
4 4akg_A Glutathione S-transfera 100.0 1.3E-67 4.4E-72 761.0 46.7 834 1000-1909 601-1775(2695)
5 1r6b_X CLPA protein; AAA+, N-t 99.5 6.9E-13 2.4E-17 180.3 22.2 153 1743-1909 459-652 (758)
6 3pxi_A Negative regulator of g 99.4 4.6E-12 1.6E-16 171.6 18.0 147 1743-1909 492-661 (758)
7 1qvr_A CLPB protein; coiled co 99.3 1.4E-11 4.7E-16 168.6 17.2 155 1744-1909 560-756 (854)
8 3cf2_A TER ATPase, transitiona 99.3 7.4E-12 2.5E-16 164.2 11.9 68 1431-1498 238-312 (806)
9 2r44_A Uncharacterized protein 99.2 6.8E-11 2.3E-15 144.1 14.6 151 1418-1629 33-196 (331)
10 3pxi_A Negative regulator of g 99.2 3.3E-10 1.1E-14 153.5 19.8 132 1434-1627 524-671 (758)
11 1r6b_X CLPA protein; AAA+, N-t 99.1 1.8E-10 6.2E-15 156.5 14.8 125 1045-1188 208-358 (758)
12 3cf2_A TER ATPase, transitiona 98.9 1.1E-09 3.6E-14 143.9 10.2 69 1430-1498 510-585 (806)
13 1ypw_A Transitional endoplasmi 98.9 1.9E-09 6.4E-14 145.2 12.5 68 1430-1497 237-311 (806)
14 1qvr_A CLPB protein; coiled co 98.9 1.8E-09 6E-14 147.8 10.2 124 1046-1188 193-341 (854)
15 1ypw_A Transitional endoplasmi 98.6 2.5E-08 8.4E-13 134.3 7.8 125 1046-1188 240-381 (806)
16 2bjv_A PSP operon transcriptio 98.3 4.3E-07 1.5E-11 106.4 7.1 55 1414-1468 12-69 (265)
17 1ofh_A ATP-dependent HSL prote 98.3 1.6E-06 5.4E-11 104.4 12.1 144 1431-1628 50-212 (310)
18 3nbx_X ATPase RAVA; AAA+ ATPas 98.3 3.8E-06 1.3E-10 105.7 15.3 48 1419-1466 29-78 (500)
19 3n70_A Transport activator; si 98.3 1.5E-07 5.1E-12 98.8 1.8 87 1414-1503 7-96 (145)
20 3f9v_A Minichromosome maintena 98.3 2.4E-07 8.2E-12 120.2 3.7 139 1433-1620 329-480 (595)
21 1hqc_A RUVB; extended AAA-ATPa 98.2 3.5E-06 1.2E-10 102.0 12.8 72 1432-1503 39-110 (324)
22 3pfi_A Holliday junction ATP-d 98.2 2.2E-06 7.4E-11 104.5 10.6 136 1432-1627 56-193 (338)
23 3u61_B DNA polymerase accessor 98.2 7.9E-06 2.7E-10 98.8 14.3 128 1419-1623 33-170 (324)
24 1g8p_A Magnesium-chelatase 38 98.2 8.6E-06 2.9E-10 99.8 14.1 76 1536-1621 145-222 (350)
25 4b4t_J 26S protease regulatory 98.2 2.2E-06 7.6E-11 103.1 8.1 69 1429-1497 180-255 (405)
26 3h4m_A Proteasome-activating n 98.1 2.1E-06 7.3E-11 101.8 7.4 67 1430-1496 50-123 (285)
27 2chg_A Replication factor C sm 98.1 1.2E-05 4.1E-10 91.3 13.3 135 1418-1628 23-171 (226)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.9E-06 6.5E-11 100.8 6.4 69 1430-1498 38-113 (262)
29 2r44_A Uncharacterized protein 98.1 3.4E-06 1.2E-10 102.3 7.8 149 1032-1190 34-196 (331)
30 3vfd_A Spastin; ATPase, microt 98.1 4.7E-06 1.6E-10 103.3 9.0 67 1431-1497 148-221 (389)
31 3m6a_A ATP-dependent protease 98.1 5.3E-06 1.8E-10 106.8 9.6 136 1433-1627 110-262 (543)
32 3co5_A Putative two-component 98.1 7.7E-07 2.6E-11 93.1 1.2 86 1414-1503 10-95 (143)
33 1xwi_A SKD1 protein; VPS4B, AA 98.1 7.1E-06 2.4E-10 98.5 9.7 66 1432-1497 46-119 (322)
34 4b4t_I 26S protease regulatory 98.0 3.9E-06 1.3E-10 101.1 6.8 69 1429-1497 214-289 (437)
35 3syl_A Protein CBBX; photosynt 98.0 2.8E-06 9.6E-11 102.1 5.7 61 1433-1495 69-142 (309)
36 2qp9_X Vacuolar protein sortin 98.0 4.7E-06 1.6E-10 101.6 7.4 68 1431-1498 84-158 (355)
37 4b4t_M 26S protease regulatory 98.0 3.2E-06 1.1E-10 103.6 5.7 68 1429-1496 213-287 (434)
38 4b4t_H 26S protease regulatory 98.0 6.6E-06 2.3E-10 100.2 8.2 69 1429-1497 241-316 (467)
39 3bos_A Putative DNA replicatio 98.0 6.5E-05 2.2E-09 86.3 16.3 87 1410-1499 29-120 (242)
40 4fcw_A Chaperone protein CLPB; 98.0 1.1E-05 3.8E-10 96.9 9.9 71 1433-1503 49-139 (311)
41 1g8p_A Magnesium-chelatase 38 98.0 5E-06 1.7E-10 101.9 6.4 138 1763-1910 44-218 (350)
42 3f8t_A Predicted ATPase involv 98.0 3.3E-05 1.1E-09 93.5 12.7 188 1433-1675 241-460 (506)
43 3d8b_A Fidgetin-like protein 1 98.0 1.3E-05 4.4E-10 97.9 9.4 67 1431-1497 117-190 (357)
44 1ojl_A Transcriptional regulat 97.9 3E-06 1E-10 100.8 3.7 56 1414-1469 8-66 (304)
45 1um8_A ATP-dependent CLP prote 97.9 1.4E-05 4.6E-10 98.8 9.7 67 1432-1498 73-152 (376)
46 4b4t_K 26S protease regulatory 97.9 1E-05 3.6E-10 99.0 8.5 68 1429-1496 204-278 (428)
47 4b4t_L 26S protease subunit RP 97.9 9.6E-06 3.3E-10 99.5 7.9 69 1429-1497 213-288 (437)
48 3eie_A Vacuolar protein sortin 97.9 5.5E-06 1.9E-10 99.8 5.7 68 1432-1499 52-126 (322)
49 3hws_A ATP-dependent CLP prote 97.9 9E-06 3.1E-10 99.8 7.1 69 1430-1498 50-131 (363)
50 1lv7_A FTSH; alpha/beta domain 97.9 1.4E-05 4.6E-10 93.1 7.7 68 1431-1498 45-119 (257)
51 1jbk_A CLPB protein; beta barr 97.9 2.5E-06 8.7E-11 94.4 1.4 78 1419-1496 29-128 (195)
52 3t15_A Ribulose bisphosphate c 97.9 7.5E-06 2.6E-10 96.9 5.1 66 1432-1497 37-113 (293)
53 1sxj_B Activator 1 37 kDa subu 97.9 3.3E-05 1.1E-09 93.3 11.0 134 1419-1628 28-176 (323)
54 2p65_A Hypothetical protein PF 97.9 2.1E-06 7.1E-11 94.5 0.2 78 1419-1496 29-128 (187)
55 3cf0_A Transitional endoplasmi 97.8 7.8E-06 2.7E-10 97.3 4.9 69 1430-1498 48-123 (301)
56 2r62_A Cell division protease 97.8 9.3E-06 3.2E-10 95.2 5.0 68 1431-1498 44-118 (268)
57 3hu3_A Transitional endoplasmi 97.8 7.3E-06 2.5E-10 103.4 4.1 68 1430-1497 237-311 (489)
58 1sxj_D Activator 1 41 kDa subu 97.8 3.6E-05 1.2E-09 94.3 9.7 55 1422-1476 47-109 (353)
59 4fcw_A Chaperone protein CLPB; 97.8 4.6E-05 1.6E-09 91.4 10.5 134 1765-1909 48-215 (311)
60 2zan_A Vacuolar protein sortin 97.8 1.8E-05 6E-10 99.5 6.9 67 1431-1497 167-241 (444)
61 1sxj_A Activator 1 95 kDa subu 97.8 9.2E-05 3.1E-09 95.0 13.4 69 1432-1500 78-165 (516)
62 3b9p_A CG5977-PA, isoform A; A 97.8 5.7E-05 1.9E-09 90.0 10.5 69 1431-1499 54-129 (297)
63 1njg_A DNA polymerase III subu 97.7 8.6E-05 2.9E-09 85.4 11.6 41 1418-1458 29-72 (250)
64 3te6_A Regulatory protein SIR3 97.7 3.5E-05 1.2E-09 90.7 8.2 53 1418-1470 30-94 (318)
65 3nbx_X ATPase RAVA; AAA+ ATPas 97.7 3.4E-05 1.1E-09 97.1 8.5 147 1743-1910 23-182 (500)
66 3t15_A Ribulose bisphosphate c 97.7 4.7E-05 1.6E-09 90.0 8.8 132 1764-1909 36-185 (293)
67 1l8q_A Chromosomal replication 97.7 5.3E-05 1.8E-09 91.4 9.2 66 1432-1497 38-112 (324)
68 1iqp_A RFCS; clamp loader, ext 97.7 5.3E-05 1.8E-09 91.7 8.9 85 1418-1502 31-129 (327)
69 2chq_A Replication factor C sm 97.6 2.2E-05 7.5E-10 94.7 4.4 134 1419-1628 24-171 (319)
70 2v1u_A Cell division control p 97.6 8.4E-05 2.9E-09 92.3 9.8 153 1432-1628 45-211 (387)
71 3pvs_A Replication-associated 97.6 6.1E-05 2.1E-09 94.1 8.4 76 1423-1499 40-122 (447)
72 1d2n_A N-ethylmaleimide-sensit 97.6 2.8E-05 9.7E-10 91.2 4.7 64 1432-1495 65-136 (272)
73 2c9o_A RUVB-like 1; hexameric 97.6 5.9E-05 2E-09 95.3 7.6 67 1432-1498 64-141 (456)
74 3pfi_A Holliday junction ATP-d 97.6 0.00017 5.8E-09 87.6 11.3 121 1765-1911 56-185 (338)
75 4b4t_L 26S protease subunit RP 97.6 3.9E-05 1.3E-09 94.1 5.5 137 1750-1912 199-354 (437)
76 4b4t_J 26S protease regulatory 97.6 0.00011 3.7E-09 88.5 9.1 136 1750-1912 166-321 (405)
77 3f9v_A Minichromosome maintena 97.6 4.6E-05 1.6E-09 98.8 6.0 126 1766-1907 329-473 (595)
78 2chg_A Replication factor C sm 97.5 0.00012 4.1E-09 82.8 8.4 118 1766-1911 40-162 (226)
79 2z4s_A Chromosomal replication 97.5 0.00014 4.7E-09 91.2 9.5 63 1433-1497 132-208 (440)
80 1njg_A DNA polymerase III subu 97.5 0.00038 1.3E-08 80.0 12.4 133 1764-1911 45-186 (250)
81 3uk6_A RUVB-like 2; hexameric 97.5 8.9E-05 3E-09 91.4 7.3 56 1411-1466 46-107 (368)
82 1hqc_A RUVB; extended AAA-ATPa 97.5 0.00027 9.3E-09 85.2 11.5 123 1764-1911 38-169 (324)
83 2ce7_A Cell division protein F 97.5 0.0001 3.4E-09 92.1 7.2 69 1431-1499 49-124 (476)
84 1ofh_A ATP-dependent HSL prote 97.5 0.00024 8.3E-09 85.1 10.4 134 1763-1911 49-203 (310)
85 3syl_A Protein CBBX; photosynt 97.5 8.2E-05 2.8E-09 89.2 6.2 131 1765-1923 68-218 (309)
86 4b4t_K 26S protease regulatory 97.5 5.9E-05 2E-09 92.4 4.6 130 1752-1907 192-340 (428)
87 4b4t_H 26S protease regulatory 97.5 0.00015 5.3E-09 88.3 8.1 136 1750-1911 227-381 (467)
88 3m6a_A ATP-dependent protease 97.4 0.00029 9.8E-09 90.6 11.0 138 1764-1911 108-254 (543)
89 4b4t_I 26S protease regulatory 97.4 5.6E-05 1.9E-09 91.1 3.7 145 1753-1924 203-368 (437)
90 1sxj_C Activator 1 40 kDa subu 97.4 0.00054 1.8E-08 83.1 12.4 82 1418-1499 31-126 (340)
91 1jbk_A CLPB protein; beta barr 97.4 0.00021 7.3E-09 78.6 7.5 123 1764-1910 43-185 (195)
92 4b4t_M 26S protease regulatory 97.4 6.4E-05 2.2E-09 92.1 3.3 131 1755-1911 204-353 (434)
93 2bjv_A PSP operon transcriptio 97.4 0.00012 4.1E-09 85.5 5.4 138 1757-1908 22-175 (265)
94 3pxg_A Negative regulator of g 97.3 0.00073 2.5E-08 85.3 12.7 150 1762-1943 199-366 (468)
95 2qby_B CDC6 homolog 3, cell di 97.3 0.00022 7.6E-09 88.4 7.9 36 1433-1468 47-93 (384)
96 3h4m_A Proteasome-activating n 97.3 0.0001 3.6E-09 87.1 4.6 125 1762-1911 49-189 (285)
97 1a5t_A Delta prime, HOLB; zinc 97.3 0.00074 2.5E-08 81.5 12.1 143 1763-1925 23-179 (334)
98 2p65_A Hypothetical protein PF 97.3 0.0002 6.8E-09 78.4 6.3 122 1764-1909 43-185 (187)
99 1ny5_A Transcriptional regulat 97.3 0.00068 2.3E-08 83.3 11.6 89 1414-1503 143-251 (387)
100 2chq_A Replication factor C sm 97.3 0.00027 9.2E-09 85.0 7.7 118 1766-1911 40-162 (319)
101 1ojl_A Transcriptional regulat 97.3 0.00035 1.2E-08 82.9 8.4 135 1760-1908 21-171 (304)
102 3pxg_A Negative regulator of g 97.3 9.4E-05 3.2E-09 93.6 3.7 44 1585-1628 291-335 (468)
103 1jr3_A DNA polymerase III subu 97.3 0.00071 2.4E-08 83.4 11.2 40 1418-1457 22-64 (373)
104 3k1j_A LON protease, ATP-depen 97.2 0.00034 1.2E-08 91.6 8.3 40 1418-1457 47-86 (604)
105 3k1j_A LON protease, ATP-depen 97.2 0.00014 4.6E-09 95.4 4.5 68 1842-1909 203-286 (604)
106 1a5t_A Delta prime, HOLB; zinc 97.2 0.00078 2.7E-08 81.3 10.7 44 1414-1457 4-50 (334)
107 1iqp_A RFCS; clamp loader, ext 97.2 0.00042 1.5E-08 83.6 8.4 127 1766-1923 48-179 (327)
108 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00031 1.1E-08 88.2 6.7 67 1431-1497 64-137 (499)
109 1tue_A Replication protein E1; 97.1 0.0018 6E-08 69.9 11.0 124 1750-1908 44-177 (212)
110 1sxj_B Activator 1 37 kDa subu 97.1 0.00061 2.1E-08 82.1 8.6 126 1767-1923 45-176 (323)
111 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00043 1.5E-08 80.6 6.9 138 1762-1924 37-192 (262)
112 3uk6_A RUVB-like 2; hexameric 97.1 0.0013 4.4E-08 80.9 11.4 24 1765-1788 71-94 (368)
113 1sxj_D Activator 1 41 kDa subu 97.1 0.00077 2.6E-08 82.3 9.3 122 1765-1911 59-193 (353)
114 1fnn_A CDC6P, cell division co 97.1 0.00055 1.9E-08 84.9 7.8 41 1433-1473 46-90 (389)
115 1jr3_A DNA polymerase III subu 97.1 0.0024 8.3E-08 78.5 13.6 142 1763-1923 37-188 (373)
116 1sxj_E Activator 1 40 kDa subu 97.1 0.00099 3.4E-08 81.4 9.9 140 1767-1923 39-203 (354)
117 2x8a_A Nuclear valosin-contain 97.1 0.00067 2.3E-08 79.0 7.5 67 1430-1496 43-116 (274)
118 3pvs_A Replication-associated 97.0 0.00097 3.3E-08 83.2 8.5 112 1765-1911 51-166 (447)
119 1sxj_C Activator 1 40 kDa subu 97.0 0.0011 3.9E-08 80.2 8.9 114 1767-1910 49-169 (340)
120 1um8_A ATP-dependent CLP prote 97.0 0.00056 1.9E-08 84.3 6.1 91 1763-1865 71-178 (376)
121 1u0j_A DNA replication protein 97.0 0.0013 4.4E-08 74.6 8.4 122 1764-1922 104-250 (267)
122 1ixz_A ATP-dependent metallopr 96.9 0.0005 1.7E-08 79.5 5.2 67 1431-1497 49-122 (254)
123 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.0018 6.3E-08 77.4 10.1 135 1764-1924 45-194 (322)
124 1iy2_A ATP-dependent metallopr 96.9 0.00086 3E-08 78.7 7.0 66 1431-1496 73-145 (278)
125 2kjq_A DNAA-related protein; s 96.9 0.0019 6.4E-08 67.5 8.7 62 1430-1499 35-99 (149)
126 2r62_A Cell division protease 96.9 0.0018 6.2E-08 75.5 9.4 125 1763-1911 43-184 (268)
127 3hws_A ATP-dependent CLP prote 96.9 0.00034 1.2E-08 85.7 3.3 114 1763-1889 50-189 (363)
128 3b9p_A CG5977-PA, isoform A; A 96.9 0.00094 3.2E-08 79.3 6.9 124 1764-1912 54-191 (297)
129 3u61_B DNA polymerase accessor 96.9 0.0015 5.2E-08 78.5 8.6 128 1033-1185 34-171 (324)
130 3d8b_A Fidgetin-like protein 1 96.9 0.0017 5.9E-08 79.0 9.0 125 1763-1911 116-252 (357)
131 3vfd_A Spastin; ATPase, microt 96.8 0.0015 5E-08 80.8 8.3 140 1764-1923 148-296 (389)
132 3dzd_A Transcriptional regulat 96.8 0.0023 8E-08 77.8 9.7 91 1414-1504 135-243 (368)
133 2zan_A Vacuolar protein sortin 96.8 0.0022 7.6E-08 80.3 9.5 139 1763-1924 166-316 (444)
134 2qby_B CDC6 homolog 3, cell di 96.8 0.0015 5E-08 80.9 7.9 129 1764-1911 45-198 (384)
135 2qp9_X Vacuolar protein sortin 96.8 0.00077 2.6E-08 81.9 5.2 135 1764-1925 84-233 (355)
136 3cf0_A Transitional endoplasmi 96.8 0.0018 6.1E-08 76.8 8.1 127 1756-1911 39-187 (301)
137 1d2n_A N-ethylmaleimide-sensit 96.7 0.0021 7.3E-08 75.0 7.8 119 1764-1908 64-196 (272)
138 3n70_A Transport activator; si 96.7 0.00046 1.6E-08 72.0 1.6 89 1029-1120 9-100 (145)
139 2qby_A CDC6 homolog 1, cell di 96.6 0.0016 5.3E-08 80.7 6.5 39 1432-1470 46-90 (386)
140 1lv7_A FTSH; alpha/beta domain 96.6 0.0063 2.1E-07 70.3 11.2 122 1763-1909 44-181 (257)
141 3eie_A Vacuolar protein sortin 96.6 0.0014 4.7E-08 78.7 5.4 121 1764-1911 51-185 (322)
142 1in4_A RUVB, holliday junction 96.6 0.0022 7.6E-08 77.2 7.1 81 1420-1501 33-120 (334)
143 2ce7_A Cell division protein F 96.6 0.002 7E-08 80.3 6.8 123 1763-1911 48-187 (476)
144 3co5_A Putative two-component 96.6 0.00045 1.5E-08 71.9 0.7 88 1028-1119 11-98 (143)
145 1sxj_E Activator 1 40 kDa subu 96.5 0.004 1.4E-07 75.9 9.1 70 1535-1628 134-203 (354)
146 1tue_A Replication protein E1; 96.5 0.006 2.1E-07 65.8 9.1 30 1433-1462 60-89 (212)
147 3bos_A Putative DNA replicatio 96.4 0.0082 2.8E-07 68.4 10.4 138 1029-1187 35-182 (242)
148 3umf_A Adenylate kinase; rossm 96.4 0.002 6.7E-08 71.5 4.7 27 1762-1788 27-53 (217)
149 2gno_A DNA polymerase III, gam 96.4 0.0077 2.6E-07 71.0 10.1 125 1765-1924 19-150 (305)
150 3hu3_A Transitional endoplasmi 96.4 0.0028 9.7E-08 79.8 6.4 129 1755-1911 227-373 (489)
151 2gno_A DNA polymerase III, gam 96.4 0.0059 2E-07 72.0 8.8 80 1420-1499 5-98 (305)
152 3jvv_A Twitching mobility prot 96.3 0.0068 2.3E-07 72.9 9.1 99 1764-1865 123-221 (356)
153 3sr0_A Adenylate kinase; phosp 96.3 0.0022 7.7E-08 70.8 4.3 23 1766-1788 2-24 (206)
154 2w58_A DNAI, primosome compone 96.3 0.0016 5.4E-08 72.3 3.1 80 1416-1496 33-128 (202)
155 1fnn_A CDC6P, cell division co 96.3 0.013 4.3E-07 72.5 11.4 133 1766-1911 46-194 (389)
156 2v1u_A Cell division control p 96.2 0.0029 1E-07 78.2 5.4 138 1763-1911 43-202 (387)
157 3ec2_A DNA replication protein 96.1 0.0037 1.3E-07 67.8 4.7 26 1764-1789 38-63 (180)
158 1l8q_A Chromosomal replication 96.0 0.009 3.1E-07 71.7 8.1 121 1047-1187 40-174 (324)
159 1in4_A RUVB, holliday junction 95.8 0.016 5.6E-07 69.6 9.1 122 1765-1911 52-181 (334)
160 2dhr_A FTSH; AAA+ protein, hex 95.8 0.037 1.3E-06 69.5 12.4 124 1763-1912 63-203 (499)
161 2qby_A CDC6 homolog 1, cell di 95.5 0.024 8.3E-07 69.7 9.4 133 1764-1911 45-198 (386)
162 3te6_A Regulatory protein SIR3 95.5 0.006 2E-07 71.8 3.4 52 1031-1082 30-93 (318)
163 2z4s_A Chromosomal replication 95.5 0.018 6.1E-07 71.9 7.9 123 1047-1188 133-272 (440)
164 3dzd_A Transcriptional regulat 95.4 0.017 5.8E-07 70.2 7.2 134 1760-1908 148-297 (368)
165 3ec2_A DNA replication protein 95.4 0.0064 2.2E-07 65.9 3.1 88 1415-1504 17-123 (180)
166 1sxj_A Activator 1 95 kDa subu 95.2 0.016 5.5E-07 74.2 6.2 120 1047-1188 80-218 (516)
167 2eyu_A Twitching motility prot 95.2 0.02 6.7E-07 65.9 6.4 31 1761-1791 22-52 (261)
168 1ny5_A Transcriptional regulat 95.0 0.015 5.2E-07 71.2 5.2 144 1750-1907 145-305 (387)
169 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.016 5.3E-07 67.0 4.9 89 1765-1862 5-94 (260)
170 4eaq_A DTMP kinase, thymidylat 94.9 0.021 7E-07 64.4 5.3 27 1764-1790 26-52 (229)
171 1g41_A Heat shock protein HSLU 94.9 0.015 5.3E-07 71.2 4.5 37 1432-1468 51-87 (444)
172 2ewv_A Twitching motility prot 94.8 0.04 1.4E-06 66.9 7.9 90 1763-1856 135-225 (372)
173 2x8a_A Nuclear valosin-contain 94.6 0.014 4.7E-07 67.9 3.0 27 1762-1788 42-68 (274)
174 2qgz_A Helicase loader, putati 94.4 0.019 6.5E-07 67.9 3.8 75 1420-1495 136-226 (308)
175 2kjq_A DNAA-related protein; s 94.4 0.12 4.2E-06 53.6 9.4 58 1047-1112 39-99 (149)
176 1ex7_A Guanylate kinase; subst 94.3 0.019 6.5E-07 61.9 3.1 24 1765-1788 2-25 (186)
177 1ixz_A ATP-dependent metallopr 94.3 0.046 1.6E-06 62.9 6.5 26 1763-1788 48-73 (254)
178 2qen_A Walker-type ATPase; unk 94.2 0.028 9.5E-07 68.2 4.8 47 1419-1467 19-65 (350)
179 2w58_A DNAI, primosome compone 94.1 0.04 1.4E-06 60.8 5.3 26 1765-1790 55-80 (202)
180 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.021 7.2E-07 68.1 3.1 30 1759-1788 166-195 (330)
181 1w5s_A Origin recognition comp 94.0 0.028 9.7E-07 69.9 4.3 38 1433-1470 52-100 (412)
182 1kgd_A CASK, peripheral plasma 94.0 0.027 9.1E-07 60.9 3.4 25 1764-1788 5-29 (180)
183 1lvg_A Guanylate kinase, GMP k 93.9 0.026 8.8E-07 62.1 3.3 25 1764-1788 4-28 (198)
184 3lv8_A DTMP kinase, thymidylat 93.9 0.043 1.5E-06 61.7 5.1 99 1764-1862 27-149 (236)
185 1kag_A SKI, shikimate kinase I 93.8 0.025 8.5E-07 60.7 2.9 25 1764-1788 4-28 (173)
186 2ze6_A Isopentenyl transferase 93.8 0.061 2.1E-06 61.6 6.2 23 1766-1788 3-25 (253)
187 1iy2_A ATP-dependent metallopr 93.7 0.066 2.2E-06 62.5 6.5 26 1763-1788 72-97 (278)
188 2fna_A Conserved hypothetical 93.7 0.044 1.5E-06 66.6 5.1 45 1420-1466 21-65 (357)
189 1ye8_A Protein THEP1, hypothet 93.6 0.033 1.1E-06 59.9 3.4 23 1766-1788 2-24 (178)
190 3kb2_A SPBC2 prophage-derived 93.6 0.034 1.2E-06 59.5 3.4 23 1766-1788 3-25 (173)
191 3vaa_A Shikimate kinase, SK; s 93.5 0.038 1.3E-06 60.8 3.8 27 1762-1788 23-49 (199)
192 3f8t_A Predicted ATPase involv 93.5 0.028 9.5E-07 68.3 2.7 120 1766-1908 241-377 (506)
193 1qhx_A CPT, protein (chloramph 93.3 0.035 1.2E-06 59.8 3.1 24 1765-1788 4-27 (178)
194 3trf_A Shikimate kinase, SK; a 93.3 0.043 1.5E-06 59.6 3.7 25 1764-1788 5-29 (185)
195 2c95_A Adenylate kinase 1; tra 93.3 0.059 2E-06 59.0 4.8 28 1761-1788 6-33 (196)
196 3gmt_A Adenylate kinase; ssgci 93.3 0.057 2E-06 59.9 4.6 23 1766-1788 10-32 (230)
197 1zp6_A Hypothetical protein AT 93.2 0.036 1.2E-06 60.5 3.0 25 1763-1787 8-32 (191)
198 2vhj_A Ntpase P4, P4; non- hyd 93.2 0.077 2.6E-06 61.6 5.7 31 1434-1464 126-156 (331)
199 1s96_A Guanylate kinase, GMP k 93.2 0.041 1.4E-06 61.3 3.4 31 1758-1788 10-40 (219)
200 2c9o_A RUVB-like 1; hexameric 93.1 0.076 2.6E-06 66.7 6.1 26 1764-1789 63-88 (456)
201 1ly1_A Polynucleotide kinase; 93.0 0.042 1.4E-06 59.3 3.0 22 1765-1786 3-24 (181)
202 3ney_A 55 kDa erythrocyte memb 93.0 0.049 1.7E-06 59.1 3.4 25 1764-1788 19-43 (197)
203 3a00_A Guanylate kinase, GMP k 92.9 0.044 1.5E-06 59.6 3.0 24 1765-1788 2-25 (186)
204 3tr0_A Guanylate kinase, GMP k 92.9 0.047 1.6E-06 60.3 3.3 26 1763-1788 6-31 (205)
205 2rhm_A Putative kinase; P-loop 92.9 0.051 1.7E-06 59.4 3.5 25 1764-1788 5-29 (193)
206 1ltq_A Polynucleotide kinase; 92.9 0.054 1.9E-06 64.0 4.0 23 1765-1787 3-25 (301)
207 4tmk_A Protein (thymidylate ki 92.8 0.049 1.7E-06 60.3 3.3 98 1765-1862 4-127 (213)
208 1nks_A Adenylate kinase; therm 92.8 0.055 1.9E-06 59.0 3.6 25 1766-1790 3-27 (194)
209 3uie_A Adenylyl-sulfate kinase 92.8 0.052 1.8E-06 59.8 3.4 26 1764-1789 25-50 (200)
210 1kht_A Adenylate kinase; phosp 92.8 0.054 1.8E-06 59.0 3.5 25 1765-1789 4-28 (192)
211 4eun_A Thermoresistant glucoki 92.8 0.052 1.8E-06 59.8 3.4 25 1764-1788 29-53 (200)
212 3ld9_A DTMP kinase, thymidylat 92.7 0.05 1.7E-06 60.4 3.2 26 1765-1790 22-47 (223)
213 2bbw_A Adenylate kinase 4, AK4 92.7 0.057 1.9E-06 61.7 3.8 24 1765-1788 28-51 (246)
214 3t61_A Gluconokinase; PSI-biol 92.7 0.053 1.8E-06 59.8 3.4 24 1765-1788 19-42 (202)
215 2orw_A Thymidine kinase; TMTK, 92.6 0.071 2.4E-06 57.7 4.2 69 1435-1503 7-96 (184)
216 2qor_A Guanylate kinase; phosp 92.6 0.046 1.6E-06 60.4 2.7 27 1762-1788 10-36 (204)
217 1g41_A Heat shock protein HSLU 92.6 0.045 1.5E-06 67.2 2.8 25 1764-1788 50-74 (444)
218 1via_A Shikimate kinase; struc 92.6 0.057 2E-06 58.0 3.4 23 1766-1788 6-28 (175)
219 3cm0_A Adenylate kinase; ATP-b 92.5 0.06 2.1E-06 58.4 3.4 24 1765-1788 5-28 (186)
220 3tau_A Guanylate kinase, GMP k 92.5 0.06 2.1E-06 59.7 3.4 25 1764-1788 8-32 (208)
221 3iij_A Coilin-interacting nucl 92.5 0.059 2E-06 58.1 3.3 25 1764-1788 11-35 (180)
222 1knq_A Gluconate kinase; ALFA/ 92.4 0.07 2.4E-06 57.2 3.7 24 1765-1788 9-32 (175)
223 3c8u_A Fructokinase; YP_612366 92.4 0.062 2.1E-06 59.6 3.4 26 1764-1789 22-47 (208)
224 2bdt_A BH3686; alpha-beta prot 92.3 0.058 2E-06 58.7 3.0 22 1765-1786 3-24 (189)
225 1z6g_A Guanylate kinase; struc 92.3 0.059 2E-06 60.2 3.1 28 1761-1788 20-47 (218)
226 4hlc_A DTMP kinase, thymidylat 92.3 0.055 1.9E-06 59.6 2.8 24 1766-1789 4-27 (205)
227 1znw_A Guanylate kinase, GMP k 92.3 0.067 2.3E-06 59.2 3.4 29 1760-1788 16-44 (207)
228 2gza_A Type IV secretion syste 92.2 0.17 5.7E-06 61.3 7.1 31 1758-1788 169-199 (361)
229 3foz_A TRNA delta(2)-isopenten 92.2 0.22 7.7E-06 57.5 7.7 31 1434-1466 13-43 (316)
230 2j41_A Guanylate kinase; GMP, 92.1 0.068 2.3E-06 59.1 3.3 25 1764-1788 6-30 (207)
231 1cke_A CK, MSSA, protein (cyti 92.1 0.075 2.6E-06 59.8 3.7 25 1764-1788 5-29 (227)
232 2bwj_A Adenylate kinase 5; pho 92.0 0.1 3.6E-06 57.1 4.7 27 1762-1788 10-36 (199)
233 1xjc_A MOBB protein homolog; s 91.9 0.1 3.6E-06 55.0 4.2 27 1765-1791 5-31 (169)
234 1htw_A HI0065; nucleotide-bind 91.9 0.086 2.9E-06 55.3 3.6 25 1764-1788 33-57 (158)
235 3fb4_A Adenylate kinase; psych 91.9 0.076 2.6E-06 59.2 3.4 22 1767-1788 3-24 (216)
236 2yhs_A FTSY, cell division pro 91.9 0.26 8.9E-06 60.9 8.3 32 1765-1796 294-325 (503)
237 2qgz_A Helicase loader, putati 91.8 0.12 4.2E-06 60.9 5.3 26 1764-1789 152-177 (308)
238 3lw7_A Adenylate kinase relate 91.8 0.066 2.3E-06 57.3 2.7 20 1765-1784 2-21 (179)
239 1zak_A Adenylate kinase; ATP:A 91.8 0.081 2.8E-06 59.3 3.5 24 1765-1788 6-29 (222)
240 1e6c_A Shikimate kinase; phosp 91.8 0.082 2.8E-06 56.5 3.3 23 1766-1788 4-26 (173)
241 3hjn_A DTMP kinase, thymidylat 91.7 0.44 1.5E-05 52.0 9.2 26 1767-1792 3-28 (197)
242 3sop_A Neuronal-specific septi 91.7 0.082 2.8E-06 61.0 3.5 24 1765-1788 3-26 (270)
243 3vaa_A Shikimate kinase, SK; s 91.7 0.055 1.9E-06 59.5 1.9 33 1428-1460 22-54 (199)
244 2iyv_A Shikimate kinase, SK; t 91.7 0.084 2.9E-06 57.1 3.4 23 1766-1788 4-26 (184)
245 2cdn_A Adenylate kinase; phosp 91.7 0.083 2.9E-06 58.1 3.4 23 1766-1788 22-44 (201)
246 1zuh_A Shikimate kinase; alpha 91.6 0.093 3.2E-06 55.8 3.6 24 1765-1788 8-31 (168)
247 2jaq_A Deoxyguanosine kinase; 91.6 0.084 2.9E-06 58.2 3.4 23 1766-1788 2-24 (205)
248 3e1s_A Exodeoxyribonuclease V, 91.6 0.19 6.4E-06 64.7 7.0 29 1763-1791 203-231 (574)
249 1tev_A UMP-CMP kinase; ploop, 91.6 0.086 2.9E-06 57.6 3.4 24 1765-1788 4-27 (196)
250 2plr_A DTMP kinase, probable t 91.6 0.085 2.9E-06 58.6 3.4 25 1765-1789 5-29 (213)
251 2v9p_A Replication protein E1; 91.6 0.11 3.6E-06 60.7 4.3 29 1760-1788 122-150 (305)
252 1y63_A LMAJ004144AAA protein; 91.6 0.085 2.9E-06 57.1 3.2 23 1765-1787 11-33 (184)
253 1rj9_A FTSY, signal recognitio 91.5 0.1 3.5E-06 61.3 4.0 32 1764-1795 102-133 (304)
254 1aky_A Adenylate kinase; ATP:A 91.5 0.089 3E-06 58.9 3.4 24 1765-1788 5-28 (220)
255 3b85_A Phosphate starvation-in 91.4 0.13 4.5E-06 56.7 4.6 33 1761-1794 19-51 (208)
256 1np6_A Molybdopterin-guanine d 91.4 0.11 3.8E-06 55.3 3.8 27 1764-1790 6-32 (174)
257 1kag_A SKI, shikimate kinase I 91.3 0.077 2.6E-06 56.7 2.5 29 1432-1460 5-33 (173)
258 3b9q_A Chloroplast SRP recepto 91.3 0.12 4.2E-06 60.6 4.4 31 1764-1794 100-130 (302)
259 3dl0_A Adenylate kinase; phosp 91.3 0.079 2.7E-06 59.1 2.7 22 1767-1788 3-24 (216)
260 1qf9_A UMP/CMP kinase, protein 91.3 0.1 3.5E-06 56.9 3.5 24 1765-1788 7-30 (194)
261 2qm8_A GTPase/ATPase; G protei 91.3 0.16 5.5E-06 60.7 5.5 40 1764-1803 55-94 (337)
262 1gvn_B Zeta; postsegregational 91.2 0.086 2.9E-06 61.5 3.0 24 1765-1788 34-57 (287)
263 1qhx_A CPT, protein (chloramph 91.2 0.079 2.7E-06 56.9 2.5 31 1434-1464 6-36 (178)
264 1svm_A Large T antigen; AAA+ f 91.2 0.14 4.9E-06 61.7 5.0 29 1760-1788 165-193 (377)
265 3tlx_A Adenylate kinase 2; str 91.2 0.16 5.6E-06 57.6 5.3 25 1764-1788 29-53 (243)
266 2og2_A Putative signal recogni 91.2 0.39 1.3E-05 57.4 8.7 32 1764-1795 157-188 (359)
267 3asz_A Uridine kinase; cytidin 91.2 0.1 3.5E-06 57.9 3.5 24 1765-1788 7-30 (211)
268 2pt5_A Shikimate kinase, SK; a 91.2 0.1 3.5E-06 55.4 3.3 23 1766-1788 2-24 (168)
269 4gp7_A Metallophosphoesterase; 91.2 0.083 2.8E-06 56.4 2.6 20 1764-1783 9-28 (171)
270 2yvu_A Probable adenylyl-sulfa 91.1 0.11 3.8E-06 56.3 3.6 28 1764-1791 13-40 (186)
271 1zd8_A GTP:AMP phosphotransfer 91.1 0.087 3E-06 59.3 2.8 24 1765-1788 8-31 (227)
272 1e4v_A Adenylate kinase; trans 91.0 0.11 3.7E-06 57.9 3.5 23 1766-1788 2-24 (214)
273 3a8t_A Adenylate isopentenyltr 91.0 0.12 4.1E-06 60.7 3.9 24 1765-1788 41-64 (339)
274 2i3b_A HCR-ntpase, human cance 90.9 0.11 3.8E-06 56.3 3.3 24 1766-1789 3-26 (189)
275 2wwf_A Thymidilate kinase, put 90.9 0.11 3.9E-06 57.5 3.5 27 1764-1790 10-36 (212)
276 3be4_A Adenylate kinase; malar 90.9 0.12 3.9E-06 57.8 3.5 24 1765-1788 6-29 (217)
277 2vli_A Antibiotic resistance p 90.9 0.08 2.7E-06 57.2 2.1 24 1765-1788 6-29 (183)
278 2xb4_A Adenylate kinase; ATP-b 90.9 0.11 3.8E-06 58.2 3.4 23 1766-1788 2-24 (223)
279 1u5p_A Spectrin alpha chain, b 90.8 3.2 0.00011 45.8 15.4 162 77-238 33-213 (216)
280 3e70_C DPA, signal recognition 90.8 0.13 4.4E-06 61.0 3.9 34 1764-1797 129-162 (328)
281 4eun_A Thermoresistant glucoki 90.8 0.083 2.8E-06 58.1 2.1 29 1432-1460 30-58 (200)
282 1nn5_A Similar to deoxythymidy 90.7 0.13 4.4E-06 57.2 3.8 27 1764-1790 9-35 (215)
283 2j37_W Signal recognition part 90.7 0.86 2.9E-05 57.1 11.5 34 1765-1798 102-135 (504)
284 2z0h_A DTMP kinase, thymidylat 90.7 0.12 4.1E-06 56.6 3.4 25 1766-1790 2-26 (197)
285 1rz3_A Hypothetical protein rb 90.7 0.19 6.4E-06 55.3 5.0 26 1765-1790 23-48 (201)
286 3nwj_A ATSK2; P loop, shikimat 90.7 0.14 4.9E-06 58.1 4.0 25 1764-1788 48-72 (250)
287 3exa_A TRNA delta(2)-isopenten 90.6 0.21 7.1E-06 57.9 5.3 31 1434-1466 6-36 (322)
288 2oap_1 GSPE-2, type II secreti 90.5 0.14 4.7E-06 64.7 4.0 32 1757-1788 253-284 (511)
289 3trf_A Shikimate kinase, SK; a 90.5 0.098 3.4E-06 56.6 2.4 28 1433-1460 7-34 (185)
290 2pbr_A DTMP kinase, thymidylat 90.5 0.13 4.4E-06 56.1 3.4 24 1766-1789 2-25 (195)
291 2v54_A DTMP kinase, thymidylat 90.4 0.12 4.1E-06 56.9 3.1 25 1764-1788 4-28 (204)
292 3uul_A Utrophin; spectrin repe 90.4 1.3 4.3E-05 43.6 10.4 106 137-242 5-114 (118)
293 2if2_A Dephospho-COA kinase; a 90.3 0.13 4.3E-06 56.8 3.1 21 1766-1786 3-23 (204)
294 1ak2_A Adenylate kinase isoenz 90.2 0.14 4.8E-06 57.8 3.4 24 1765-1788 17-40 (233)
295 3tif_A Uncharacterized ABC tra 90.1 0.11 3.6E-06 58.7 2.3 25 1764-1788 31-55 (235)
296 1ukz_A Uridylate kinase; trans 90.1 0.12 4E-06 57.0 2.7 24 1765-1788 16-39 (203)
297 2p5t_B PEZT; postsegregational 90.1 0.098 3.3E-06 59.9 2.0 24 1765-1788 33-56 (253)
298 1gtv_A TMK, thymidylate kinase 90.1 0.089 3E-06 58.5 1.6 25 1766-1790 2-26 (214)
299 3exa_A TRNA delta(2)-isopenten 90.0 0.25 8.4E-06 57.2 5.2 24 1765-1788 4-27 (322)
300 3r20_A Cytidylate kinase; stru 90.0 0.17 5.8E-06 56.5 3.8 25 1764-1788 9-33 (233)
301 2pez_A Bifunctional 3'-phospho 89.9 0.15 5.3E-06 54.7 3.4 26 1764-1789 5-30 (179)
302 2f1r_A Molybdopterin-guanine d 89.9 0.099 3.4E-06 55.6 1.8 26 1765-1790 3-28 (171)
303 1p9r_A General secretion pathw 89.9 0.23 7.8E-06 60.9 5.2 26 1765-1790 168-193 (418)
304 3kb2_A SPBC2 prophage-derived 89.9 0.12 4E-06 55.2 2.4 27 1434-1460 4-30 (173)
305 1jjv_A Dephospho-COA kinase; P 89.8 0.13 4.6E-06 56.7 2.8 21 1766-1786 4-24 (206)
306 2pcj_A ABC transporter, lipopr 89.7 0.12 4.1E-06 57.8 2.3 25 1764-1788 30-54 (224)
307 1vma_A Cell division protein F 89.7 0.19 6.5E-06 58.9 4.1 33 1764-1796 104-136 (306)
308 2qmh_A HPR kinase/phosphorylas 89.7 0.15 5.2E-06 54.7 2.9 25 1764-1788 34-58 (205)
309 3lnc_A Guanylate kinase, GMP k 89.6 0.1 3.5E-06 58.9 1.7 25 1764-1788 27-52 (231)
310 4e22_A Cytidylate kinase; P-lo 89.5 0.15 5E-06 58.4 2.9 25 1764-1788 27-51 (252)
311 1w36_D RECD, exodeoxyribonucle 89.4 0.66 2.3E-05 60.2 9.3 28 1763-1790 163-190 (608)
312 2onk_A Molybdate/tungstate ABC 89.4 0.15 5.2E-06 57.5 2.9 24 1765-1788 25-48 (240)
313 1m7g_A Adenylylsulfate kinase; 89.4 0.28 9.4E-06 54.4 5.0 28 1762-1789 23-50 (211)
314 2bwj_A Adenylate kinase 5; pho 89.4 0.12 4.2E-06 56.5 2.1 34 1427-1460 8-41 (199)
315 2ga8_A Hypothetical 39.9 kDa p 89.3 0.29 9.9E-06 57.8 5.2 25 1765-1789 25-49 (359)
316 2cbz_A Multidrug resistance-as 89.3 0.13 4.6E-06 58.0 2.3 25 1764-1788 31-55 (237)
317 2r2a_A Uncharacterized protein 89.3 0.22 7.7E-06 54.3 4.0 63 1433-1495 7-99 (199)
318 1via_A Shikimate kinase; struc 89.3 0.15 5.2E-06 54.6 2.6 28 1433-1460 6-33 (175)
319 1zd8_A GTP:AMP phosphotransfer 89.3 0.11 3.8E-06 58.4 1.6 29 1432-1460 8-36 (227)
320 3eph_A TRNA isopentenyltransfe 89.2 0.49 1.7E-05 56.8 7.2 30 1435-1466 6-35 (409)
321 4a74_A DNA repair and recombin 89.2 0.17 5.7E-06 57.0 3.0 26 1763-1788 24-49 (231)
322 3nwj_A ATSK2; P loop, shikimat 89.1 0.19 6.3E-06 57.1 3.3 41 1420-1460 34-77 (250)
323 2qt1_A Nicotinamide riboside k 89.1 0.16 5.3E-06 56.2 2.6 25 1764-1788 21-45 (207)
324 3dm5_A SRP54, signal recogniti 89.0 0.48 1.6E-05 58.0 7.1 35 1765-1799 101-135 (443)
325 3aez_A Pantothenate kinase; tr 89.0 0.21 7E-06 58.9 3.7 27 1764-1790 90-116 (312)
326 2ehv_A Hypothetical protein PH 89.0 0.16 5.6E-06 57.9 2.8 24 1763-1786 29-52 (251)
327 2px0_A Flagellar biosynthesis 88.9 0.26 8.7E-06 57.7 4.4 39 1764-1802 105-144 (296)
328 2w0m_A SSO2452; RECA, SSPF, un 88.9 0.2 6.7E-06 56.5 3.4 28 1763-1790 22-49 (235)
329 1e6c_A Shikimate kinase; phosp 88.9 0.16 5.5E-06 54.2 2.5 27 1434-1460 5-31 (173)
330 3crm_A TRNA delta(2)-isopenten 88.8 0.17 6E-06 59.2 2.9 24 1765-1788 6-29 (323)
331 3cm0_A Adenylate kinase; ATP-b 88.8 0.14 4.7E-06 55.5 1.9 28 1433-1460 6-33 (186)
332 1sgw_A Putative ABC transporte 88.8 0.14 4.7E-06 56.7 1.9 25 1764-1788 35-59 (214)
333 3gfo_A Cobalt import ATP-bindi 88.7 0.15 5.3E-06 58.7 2.3 25 1764-1788 34-58 (275)
334 1b0u_A Histidine permease; ABC 88.7 0.16 5.4E-06 58.4 2.3 25 1764-1788 32-56 (262)
335 1oix_A RAS-related protein RAB 88.7 0.2 6.9E-06 54.5 3.1 22 1765-1786 30-51 (191)
336 2p67_A LAO/AO transport system 88.6 0.34 1.2E-05 58.1 5.4 41 1764-1804 56-96 (341)
337 2orw_A Thymidine kinase; TMTK, 88.6 0.25 8.4E-06 53.4 3.7 29 1841-1869 77-107 (184)
338 1vht_A Dephospho-COA kinase; s 88.6 0.21 7.2E-06 55.7 3.3 23 1764-1786 4-26 (218)
339 2iyv_A Shikimate kinase, SK; t 88.5 0.17 5.7E-06 54.7 2.3 27 1434-1460 5-31 (184)
340 1g6h_A High-affinity branched- 88.4 0.16 5.6E-06 58.1 2.3 25 1764-1788 33-57 (257)
341 1uf9_A TT1252 protein; P-loop, 88.4 0.21 7.2E-06 54.9 3.1 24 1764-1787 8-31 (203)
342 1mv5_A LMRA, multidrug resista 88.4 0.17 5.7E-06 57.5 2.3 25 1764-1788 28-52 (243)
343 2www_A Methylmalonic aciduria 88.4 0.25 8.5E-06 59.4 4.0 40 1765-1804 75-114 (349)
344 3iij_A Coilin-interacting nucl 88.3 0.18 6.3E-06 54.2 2.5 28 1433-1460 13-40 (180)
345 1tq4_A IIGP1, interferon-induc 88.3 0.39 1.4E-05 58.5 5.7 39 1750-1788 54-93 (413)
346 2ff7_A Alpha-hemolysin translo 88.3 0.17 5.8E-06 57.5 2.3 25 1764-1788 35-59 (247)
347 3kta_A Chromosome segregation 88.3 0.21 7.2E-06 53.8 3.0 23 1766-1788 28-50 (182)
348 1zuh_A Shikimate kinase; alpha 88.3 0.2 6.7E-06 53.2 2.7 27 1434-1460 10-36 (168)
349 2olj_A Amino acid ABC transpor 88.3 0.17 5.9E-06 57.9 2.3 25 1764-1788 50-74 (263)
350 3fvq_A Fe(3+) IONS import ATP- 88.3 0.2 6.8E-06 59.7 3.0 24 1765-1788 31-54 (359)
351 2zu0_C Probable ATP-dependent 88.2 0.2 6.8E-06 57.7 2.9 24 1764-1787 46-69 (267)
352 3upu_A ATP-dependent DNA helic 88.2 0.26 9E-06 61.9 4.2 91 1413-1503 26-148 (459)
353 1ji0_A ABC transporter; ATP bi 88.2 0.17 5.9E-06 57.2 2.3 25 1764-1788 32-56 (240)
354 2jeo_A Uridine-cytidine kinase 88.2 0.25 8.6E-06 56.2 3.7 26 1763-1788 24-49 (245)
355 2ghi_A Transport protein; mult 88.2 0.18 6E-06 57.9 2.3 25 1764-1788 46-70 (260)
356 4g1u_C Hemin import ATP-bindin 88.2 0.17 5.9E-06 58.1 2.3 25 1764-1788 37-61 (266)
357 2d2e_A SUFC protein; ABC-ATPas 88.2 0.2 6.9E-06 57.1 2.8 24 1764-1787 29-52 (250)
358 2f9l_A RAB11B, member RAS onco 88.0 0.22 7.6E-06 54.5 3.0 22 1765-1786 6-27 (199)
359 1vpl_A ABC transporter, ATP-bi 88.0 0.18 6.3E-06 57.5 2.3 25 1764-1788 41-65 (256)
360 2pze_A Cystic fibrosis transme 88.0 0.18 6.2E-06 56.6 2.3 25 1764-1788 34-58 (229)
361 2c95_A Adenylate kinase 1; tra 88.0 0.19 6.6E-06 54.8 2.4 28 1433-1460 11-38 (196)
362 2ixe_A Antigen peptide transpo 87.9 0.19 6.4E-06 58.0 2.3 25 1764-1788 45-69 (271)
363 3upu_A ATP-dependent DNA helic 87.9 0.57 1.9E-05 58.8 7.0 38 1755-1792 35-73 (459)
364 3d3q_A TRNA delta(2)-isopenten 87.8 0.2 7E-06 59.0 2.6 32 1433-1466 9-40 (340)
365 2qi9_C Vitamin B12 import ATP- 87.8 0.19 6.6E-06 57.0 2.3 25 1764-1788 26-50 (249)
366 3llm_A ATP-dependent RNA helic 87.7 0.34 1.2E-05 54.6 4.4 29 1757-1785 69-97 (235)
367 2grj_A Dephospho-COA kinase; T 87.7 0.26 8.8E-06 53.5 3.1 23 1766-1788 14-36 (192)
368 2yv5_A YJEQ protein; hydrolase 87.6 0.34 1.2E-05 56.9 4.4 22 1764-1785 165-186 (302)
369 3foz_A TRNA delta(2)-isopenten 87.5 0.29 9.9E-06 56.6 3.5 24 1765-1788 11-34 (316)
370 1odf_A YGR205W, hypothetical 3 87.5 0.27 9.2E-06 57.2 3.4 26 1765-1790 32-57 (290)
371 1z47_A CYSA, putative ABC-tran 87.5 0.23 7.8E-06 59.3 2.8 25 1764-1788 41-65 (355)
372 2ze6_A Isopentenyl transferase 87.5 0.21 7.3E-06 57.0 2.5 27 1434-1460 4-30 (253)
373 2ihy_A ABC transporter, ATP-bi 87.4 0.2 7E-06 57.9 2.3 25 1764-1788 47-71 (279)
374 1zu4_A FTSY; GTPase, signal re 87.4 0.34 1.2E-05 57.2 4.3 39 1764-1802 105-143 (320)
375 3rlf_A Maltose/maltodextrin im 87.4 0.24 8.1E-06 59.6 2.9 25 1764-1788 29-53 (381)
376 2nq2_C Hypothetical ABC transp 87.4 0.21 7.1E-06 57.0 2.3 25 1764-1788 31-55 (253)
377 2cvh_A DNA repair and recombin 87.3 0.25 8.4E-06 55.1 2.9 47 1430-1476 19-65 (220)
378 2yz2_A Putative ABC transporte 87.3 0.21 7.3E-06 57.4 2.3 25 1764-1788 33-57 (266)
379 3kl4_A SRP54, signal recogniti 87.3 0.29 1E-05 59.9 3.6 34 1764-1797 97-130 (433)
380 2it1_A 362AA long hypothetical 87.2 0.24 8.4E-06 59.3 2.9 25 1764-1788 29-53 (362)
381 2yyz_A Sugar ABC transporter, 87.2 0.25 8.4E-06 59.2 2.9 25 1764-1788 29-53 (359)
382 1svm_A Large T antigen; AAA+ f 87.2 0.26 8.9E-06 59.4 3.1 44 1422-1465 160-203 (377)
383 1kht_A Adenylate kinase; phosp 87.2 0.23 7.8E-06 53.9 2.4 23 1434-1456 6-28 (192)
384 2wji_A Ferrous iron transport 87.1 0.27 9.3E-06 51.9 2.9 22 1765-1786 4-25 (165)
385 3d3q_A TRNA delta(2)-isopenten 87.1 0.26 8.8E-06 58.1 2.9 25 1765-1789 8-32 (340)
386 1s35_A Beta-I spectrin, spectr 87.0 5 0.00017 44.1 13.4 163 76-238 29-211 (214)
387 3t61_A Gluconokinase; PSI-biol 86.9 0.24 8.1E-06 54.5 2.4 27 1434-1460 21-47 (202)
388 3tqc_A Pantothenate kinase; bi 86.9 0.55 1.9E-05 55.2 5.6 24 1766-1789 94-117 (321)
389 1z2a_A RAS-related protein RAB 86.9 0.3 1E-05 51.5 3.0 22 1765-1786 6-27 (168)
390 1knq_A Gluconate kinase; ALFA/ 86.9 0.28 9.6E-06 52.4 2.8 27 1434-1460 11-37 (175)
391 2rhm_A Putative kinase; P-loop 86.9 0.21 7.2E-06 54.3 1.9 27 1434-1460 8-34 (193)
392 2pjz_A Hypothetical protein ST 86.8 0.24 8E-06 56.8 2.3 25 1764-1788 30-54 (263)
393 1v43_A Sugar-binding transport 86.8 0.27 9.1E-06 59.2 2.9 25 1764-1788 37-61 (372)
394 2dyk_A GTP-binding protein; GT 86.8 0.3 1E-05 51.0 3.0 21 1766-1786 3-23 (161)
395 3lw7_A Adenylate kinase relate 86.8 0.25 8.7E-06 52.6 2.5 27 1434-1461 4-30 (179)
396 1f2t_A RAD50 ABC-ATPase; DNA d 86.7 0.35 1.2E-05 50.1 3.4 23 1766-1788 25-47 (149)
397 1tev_A UMP-CMP kinase; ploop, 86.7 0.24 8.3E-06 53.9 2.3 27 1434-1460 6-32 (196)
398 1sq5_A Pantothenate kinase; P- 86.7 0.5 1.7E-05 55.7 5.1 26 1764-1789 80-105 (308)
399 3ake_A Cytidylate kinase; CMP 86.7 0.33 1.1E-05 53.5 3.4 22 1767-1788 5-26 (208)
400 1y63_A LMAJ004144AAA protein; 86.7 0.25 8.7E-06 53.3 2.4 27 1434-1460 13-40 (184)
401 2ce2_X GTPase HRAS; signaling 86.6 0.32 1.1E-05 51.0 3.1 21 1766-1786 5-25 (166)
402 1zp6_A Hypothetical protein AT 86.6 0.12 3.9E-06 56.4 -0.4 33 1432-1464 10-42 (191)
403 1g29_1 MALK, maltose transport 86.6 0.27 9.3E-06 59.2 2.8 25 1764-1788 29-53 (372)
404 2cdn_A Adenylate kinase; phosp 86.6 0.26 8.9E-06 54.1 2.5 27 1434-1460 23-49 (201)
405 2zej_A Dardarin, leucine-rich 86.6 0.25 8.7E-06 53.2 2.3 22 1765-1786 3-24 (184)
406 3tqf_A HPR(Ser) kinase; transf 86.4 0.4 1.4E-05 50.0 3.5 23 1764-1786 16-38 (181)
407 1kao_A RAP2A; GTP-binding prot 86.4 0.33 1.1E-05 51.0 3.0 22 1765-1786 4-25 (167)
408 2qag_B Septin-6, protein NEDD5 86.3 0.33 1.1E-05 59.2 3.3 21 1767-1787 45-65 (427)
409 3gd7_A Fusion complex of cysti 86.3 0.3 1E-05 59.1 3.0 25 1764-1788 47-71 (390)
410 2pt5_A Shikimate kinase, SK; a 86.3 0.3 1E-05 51.7 2.6 27 1434-1460 3-29 (168)
411 1uj2_A Uridine-cytidine kinase 86.2 0.3 1E-05 55.8 2.9 24 1765-1788 23-46 (252)
412 1zak_A Adenylate kinase; ATP:A 86.2 0.19 6.3E-06 56.3 1.0 27 1433-1459 7-33 (222)
413 2jaq_A Deoxyguanosine kinase; 86.2 0.29 1E-05 53.7 2.6 27 1434-1460 3-29 (205)
414 3uun_A Dystrophin; triple heli 86.2 3.4 0.00012 40.4 10.3 103 138-240 6-112 (119)
415 1u0l_A Probable GTPase ENGC; p 86.2 0.39 1.3E-05 56.4 3.8 23 1764-1786 169-191 (301)
416 2vli_A Antibiotic resistance p 86.1 0.22 7.7E-06 53.6 1.6 27 1434-1460 8-34 (183)
417 1u4q_A Spectrin alpha chain, b 86.1 14 0.00049 43.3 17.7 164 77-240 33-215 (322)
418 2qen_A Walker-type ATPase; unk 86.0 0.5 1.7E-05 56.9 4.8 24 1764-1787 31-54 (350)
419 1g16_A RAS-related protein SEC 86.0 0.36 1.2E-05 50.9 3.1 21 1766-1786 5-25 (170)
420 3d31_A Sulfate/molybdate ABC t 86.0 0.22 7.6E-06 59.3 1.6 25 1764-1788 26-50 (348)
421 2gj8_A MNME, tRNA modification 85.9 0.35 1.2E-05 51.5 3.0 22 1765-1786 5-26 (172)
422 2ged_A SR-beta, signal recogni 85.9 0.35 1.2E-05 52.5 3.0 22 1765-1786 49-70 (193)
423 2cvh_A DNA repair and recombin 85.9 0.35 1.2E-05 53.9 3.1 24 1763-1786 19-42 (220)
424 2bbs_A Cystic fibrosis transme 85.9 0.29 9.8E-06 56.9 2.4 25 1764-1788 64-88 (290)
425 2fz4_A DNA repair protein RAD2 85.9 0.41 1.4E-05 54.0 3.7 36 1430-1465 107-142 (237)
426 2v3c_C SRP54, signal recogniti 85.9 0.38 1.3E-05 59.3 3.6 38 1765-1802 100-137 (432)
427 3nh6_A ATP-binding cassette SU 85.8 0.2 6.8E-06 58.6 1.1 25 1764-1788 80-104 (306)
428 3ice_A Transcription terminati 85.8 0.42 1.5E-05 56.6 3.7 40 1752-1791 162-201 (422)
429 1wms_A RAB-9, RAB9, RAS-relate 85.8 0.36 1.2E-05 51.4 3.0 22 1765-1786 8-29 (177)
430 1ek0_A Protein (GTP-binding pr 85.7 0.37 1.3E-05 50.8 3.0 22 1765-1786 4-25 (170)
431 1u8z_A RAS-related protein RAL 85.7 0.37 1.3E-05 50.6 3.0 22 1765-1786 5-26 (168)
432 1z0j_A RAB-22, RAS-related pro 85.7 0.37 1.3E-05 50.8 3.0 22 1765-1786 7-28 (170)
433 4edh_A DTMP kinase, thymidylat 85.6 0.43 1.5E-05 52.7 3.5 28 1764-1791 6-33 (213)
434 1z08_A RAS-related protein RAB 85.5 0.38 1.3E-05 50.8 3.0 22 1765-1786 7-28 (170)
435 1c1y_A RAS-related protein RAP 85.5 0.38 1.3E-05 50.5 3.0 22 1765-1786 4-25 (167)
436 1zj6_A ADP-ribosylation factor 85.5 0.62 2.1E-05 50.2 4.7 23 1764-1786 16-38 (187)
437 2nzj_A GTP-binding protein REM 85.5 0.37 1.3E-05 51.2 2.9 22 1765-1786 5-26 (175)
438 3uie_A Adenylyl-sulfate kinase 85.4 0.41 1.4E-05 52.4 3.3 30 1434-1463 28-60 (200)
439 1aky_A Adenylate kinase; ATP:A 85.4 0.34 1.2E-05 54.0 2.7 27 1434-1460 7-33 (220)
440 3tui_C Methionine import ATP-b 85.4 0.35 1.2E-05 57.7 2.9 25 1764-1788 54-78 (366)
441 2erx_A GTP-binding protein DI- 85.3 0.38 1.3E-05 50.9 2.9 22 1765-1786 4-25 (172)
442 1qf9_A UMP/CMP kinase, protein 85.3 0.3 1E-05 53.1 2.1 27 1434-1460 9-35 (194)
443 2pez_A Bifunctional 3'-phospho 85.3 0.44 1.5E-05 51.1 3.4 30 1434-1463 8-40 (179)
444 3q72_A GTP-binding protein RAD 85.3 0.37 1.3E-05 50.6 2.8 20 1766-1785 4-23 (166)
445 1cr0_A DNA primase/helicase; R 85.2 0.42 1.4E-05 56.1 3.5 30 1762-1791 33-62 (296)
446 2npi_A Protein CLP1; CLP1-PCF1 85.2 0.44 1.5E-05 59.2 3.7 32 1762-1793 136-167 (460)
447 3fb4_A Adenylate kinase; psych 85.1 0.33 1.1E-05 53.9 2.4 26 1435-1460 4-29 (216)
448 1ky3_A GTP-binding protein YPT 85.1 0.41 1.4E-05 51.2 3.0 22 1765-1786 9-30 (182)
449 1lw7_A Transcriptional regulat 85.1 0.31 1E-05 59.2 2.3 25 1764-1788 170-194 (365)
450 4b3f_X DNA-binding protein smu 85.1 0.46 1.6E-05 62.5 4.1 29 1760-1788 201-229 (646)
451 1j8m_F SRP54, signal recogniti 85.1 0.56 1.9E-05 54.8 4.3 38 1764-1801 98-135 (297)
452 3q85_A GTP-binding protein REM 85.0 0.4 1.4E-05 50.6 2.9 20 1766-1785 4-23 (169)
453 1ly1_A Polynucleotide kinase; 85.0 0.3 1E-05 52.3 2.0 26 1434-1459 5-31 (181)
454 2wjg_A FEOB, ferrous iron tran 85.0 0.39 1.3E-05 51.8 2.9 22 1765-1786 8-29 (188)
455 3dl0_A Adenylate kinase; phosp 85.0 0.33 1.1E-05 53.9 2.3 26 1435-1460 4-29 (216)
456 2fn4_A P23, RAS-related protei 85.0 0.43 1.5E-05 50.9 3.1 22 1765-1786 10-31 (181)
457 1n0w_A DNA repair protein RAD5 84.9 0.39 1.3E-05 54.3 3.0 26 1761-1786 21-46 (243)
458 2qnr_A Septin-2, protein NEDD5 84.9 0.38 1.3E-05 56.5 2.8 24 1764-1787 18-41 (301)
459 3eph_A TRNA isopentenyltransfe 84.9 0.45 1.6E-05 57.1 3.5 25 1765-1789 3-27 (409)
460 2rcn_A Probable GTPase ENGC; Y 84.8 0.43 1.5E-05 56.9 3.2 23 1764-1786 215-237 (358)
461 1gvn_B Zeta; postsegregational 84.8 0.33 1.1E-05 56.5 2.3 31 1434-1464 36-66 (287)
462 1r2q_A RAS-related protein RAB 84.8 0.44 1.5E-05 50.2 3.0 22 1765-1786 7-28 (170)
463 2f6r_A COA synthase, bifunctio 84.7 0.4 1.4E-05 55.7 2.9 22 1765-1786 76-97 (281)
464 2vhj_A Ntpase P4, P4; non- hyd 84.7 0.49 1.7E-05 55.0 3.6 24 1764-1787 123-146 (331)
465 1nrj_B SR-beta, signal recogni 84.6 0.43 1.5E-05 53.0 3.0 22 1765-1786 13-34 (218)
466 3p32_A Probable GTPase RV1496/ 84.6 0.47 1.6E-05 57.2 3.6 39 1765-1803 80-118 (355)
467 3cr8_A Sulfate adenylyltranfer 84.6 0.44 1.5E-05 60.5 3.4 29 1762-1790 367-395 (552)
468 2z0h_A DTMP kinase, thymidylat 84.6 0.45 1.5E-05 51.8 3.2 29 1435-1463 4-35 (197)
469 1cke_A CK, MSSA, protein (cyti 84.5 0.42 1.4E-05 53.5 2.9 27 1434-1460 8-34 (227)
470 3v9p_A DTMP kinase, thymidylat 84.5 0.43 1.5E-05 53.1 2.9 28 1764-1791 25-52 (227)
471 2y8e_A RAB-protein 6, GH09086P 84.5 0.47 1.6E-05 50.5 3.1 22 1765-1786 15-36 (179)
472 1oxx_K GLCV, glucose, ABC tran 84.5 0.24 8.2E-06 59.3 0.9 25 1764-1788 31-55 (353)
473 1svi_A GTP-binding protein YSX 84.4 0.45 1.5E-05 51.7 3.0 22 1765-1786 24-45 (195)
474 2wsm_A Hydrogenase expression/ 84.4 0.79 2.7E-05 51.0 5.1 40 1748-1788 15-54 (221)
475 1m2o_B GTP-binding protein SAR 84.4 0.51 1.7E-05 51.1 3.4 23 1764-1786 23-45 (190)
476 1r8s_A ADP-ribosylation factor 84.4 0.47 1.6E-05 49.7 3.0 20 1767-1786 3-22 (164)
477 1ye8_A Protein THEP1, hypothet 84.3 0.44 1.5E-05 51.0 2.8 30 1435-1464 4-33 (178)
478 1q3t_A Cytidylate kinase; nucl 84.3 0.5 1.7E-05 53.3 3.4 24 1765-1788 17-40 (236)
479 3crm_A TRNA delta(2)-isopenten 84.3 0.43 1.5E-05 55.9 2.8 29 1434-1462 8-36 (323)
480 3hr8_A Protein RECA; alpha and 84.2 0.51 1.7E-05 56.3 3.6 30 1764-1793 61-90 (356)
481 2b8t_A Thymidine kinase; deoxy 84.2 2.8 9.5E-05 46.4 9.3 98 1764-1866 12-117 (223)
482 4dsu_A GTPase KRAS, isoform 2B 84.2 0.47 1.6E-05 51.1 3.0 22 1765-1786 5-26 (189)
483 1upt_A ARL1, ADP-ribosylation 84.2 0.48 1.6E-05 50.0 3.0 23 1764-1786 7-29 (171)
484 1ls1_A Signal recognition part 84.1 0.64 2.2E-05 54.3 4.3 38 1764-1801 98-135 (295)
485 1m7b_A RND3/RHOE small GTP-bin 84.1 0.49 1.7E-05 50.9 3.1 22 1765-1786 8-29 (184)
486 3bc1_A RAS-related protein RAB 84.1 0.47 1.6E-05 51.3 3.0 22 1765-1786 12-33 (195)
487 3be4_A Adenylate kinase; malar 84.1 0.37 1.3E-05 53.6 2.2 27 1434-1460 8-34 (217)
488 1ukz_A Uridylate kinase; trans 84.0 0.44 1.5E-05 52.3 2.8 27 1434-1460 18-44 (203)
489 2dr3_A UPF0273 protein PH0284; 84.0 0.54 1.9E-05 53.3 3.6 26 1763-1788 22-47 (247)
490 3tlx_A Adenylate kinase 2; str 84.0 0.42 1.4E-05 54.2 2.6 27 1434-1460 32-58 (243)
491 2xb4_A Adenylate kinase; ATP-b 84.0 0.43 1.5E-05 53.3 2.6 27 1434-1460 3-29 (223)
492 1jjv_A Dephospho-COA kinase; P 84.0 0.36 1.2E-05 53.2 2.0 26 1434-1460 5-30 (206)
493 2oil_A CATX-8, RAS-related pro 83.9 0.48 1.6E-05 51.4 3.0 22 1765-1786 26-47 (193)
494 4e22_A Cytidylate kinase; P-lo 83.9 0.46 1.6E-05 54.2 2.9 27 1434-1460 30-56 (252)
495 1nlf_A Regulatory protein REPA 83.9 0.51 1.8E-05 54.8 3.4 28 1762-1789 28-55 (279)
496 1pui_A ENGB, probable GTP-bind 83.9 0.29 1E-05 54.0 1.2 23 1764-1786 26-48 (210)
497 2cxx_A Probable GTP-binding pr 83.8 0.49 1.7E-05 51.0 3.0 21 1766-1786 3-23 (190)
498 2hxs_A RAB-26, RAS-related pro 83.8 0.48 1.6E-05 50.5 2.9 22 1765-1786 7-28 (178)
499 2lkc_A Translation initiation 83.8 0.47 1.6E-05 50.5 2.8 23 1764-1786 8-30 (178)
500 2grj_A Dephospho-COA kinase; T 83.8 0.48 1.7E-05 51.3 2.9 28 1433-1460 14-41 (192)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=6.2e-168 Score=1795.41 Aligned_cols=1012 Identities=31% Similarity=0.528 Sum_probs=845.3
Q ss_pred hhhHHHHHHHHhhhhcCCccccccccCCCCcccccccccccccccchhHHHhhcCCCCCCCcchhhhhhHhhhhccccCC
Q psy2654 293 ENMEEEQTMVEEKESVAPTAEQEEDDGGDNFDRDESVDLDMDKKSDEDDERKKLLKPPSDEPIDMDVYGAASEMGSEAAP 372 (1949)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (1949)
..+..+.+.+..+..+|..+...+. .-+.|+...|.+++.+.++...+...+..+.+......+++
T Consensus 22 ~~l~~~~~el~~l~~~w~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------- 87 (3245)
T 3vkg_A 22 GGKVPVEEEIQDLKAVWVELSNTWQ-EIDSLKETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSA------------- 87 (3245)
T ss_dssp --------------------------CHHHHHHCCTTTCCC-------------------------C-------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChhhcCHHHHHHHHHHHHHHHHhCcchhhhhHH-------------
Confidence 4445555555566666655533332 22224445555666666554444333333333333333333
Q ss_pred CchhhhchhhhhhhhchhhhhhhcCCCChhhhhhhhHHHHHHHHhHhHHHhhccccccCCCCCCCcEEEEEEecCCCeee
Q psy2654 373 LPDILEHTEVADIGENEDDALSAVPGMPDEFDQESSSQNLKLTSRVHLVYITDEMCHTDFSNKAPLFRVSFSLEEPDLVF 452 (1949)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~~l~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 452 (1949)
+..+...++.+...++.+..|.++.++.|||..++...+.. +
T Consensus 88 ------~~~l~~~i~~f~~~lpll~~L~n~~~~~RHW~~l~~~~g~~--------------------------------~ 129 (3245)
T 3vkg_A 88 ------FDHAQNLIKIYLKGNAIITDLHSEAIKDRHWKILKKRLNTN--------------------------------W 129 (3245)
T ss_dssp ------HHHHHHHHHHHHHHTHHHHHTTSTTCCHHHHHHHHHHTTCC--------------------------------C
T ss_pred ------HHHHHHHHHHHHHHhHHHHHhCCccccHHHHHHHHHHhCCC--------------------------------C
Confidence 34455666777777788888888888888888887553320 1
Q ss_pred ccCCCCCchhhHhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHhhccceeeEeeeccccCccccccHHHHHHHHHHHHH
Q psy2654 453 TPTLNFNDEAEEESLCSQLKEIIEDITDMGVKIKRVAKRTENTYKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQV 532 (1949)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~A~~e~~ie~~l~~~~~~w~~~~f~~~~~~~~~~~~l~~~~ei~~~led~~~ 532 (1949)
.+. +++++.+++..+..+.+.|++|+..|++|..||+.|++|.+.|+.++|++.+|+ ++..+++++|+|++.|+||++
T Consensus 130 ~~~-~~tL~~ll~~~l~~~~~~i~~I~~~A~~E~~iE~~L~~i~~~W~~~~f~~~~~~-~~~~ll~~~dei~~~led~~~ 207 (3245)
T 3vkg_A 130 IIT-ELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQ-RKCKLVRGWDDLFNKLAEHLN 207 (3245)
T ss_dssp CTT-SCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCEEEEET-TTEEEEECHHHHHHHHHHHHH
T ss_pred Ccc-CCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEecc-CCeeEeCCHHHHHHHHHHHHH
Confidence 122 588999999999999999999999999999999999999999999999999996 467889999999999999999
Q ss_pred HHHhhhcCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q psy2654 533 QLQNMASSKFVGYFQKEVNEWQIKLSNADAVISIWIEVQRTWQHLESIFIGSDDIRQQLPEDSRRFDATDKAFRALAQDM 612 (1949)
Q Consensus 533 ~l~~m~~s~~~~~f~~~v~~w~~~L~~~~~il~~w~~vQ~~W~~Le~iF~~s~di~~~Lp~e~~~F~~vd~~~~~i~~~~ 612 (1949)
.+++|++|+|+++|+++|..|+++|..+.++++.|.+||++|+|||+||.+++||++|||.|+++|+.||+.|+.+|+++
T Consensus 208 ~l~sm~~S~~~~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im~~~ 287 (3245)
T 3vkg_A 208 SISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKV 287 (3245)
T ss_dssp HHHHTTSSTTTTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred hcCCceeEeccCcchHHHHHHHHHHHHHHHHHHHHHHHhhccccCccccCChhhHHHHHhcCCCCCccCCCCCCchh---
Q psy2654 613 HKTPNVVIGTNKPGLYEKLETIQKDLTKCEKALAQYLETKKLTYPRFYFVSSSDLLDILANGNNPEAFRPGKDGKIN--- 689 (1949)
Q Consensus 613 ~~~p~v~~~~~~~~~~~~L~~~~~~L~~~~k~L~~yLe~kR~~FPRfyFlS~~dlL~ils~~~~p~~~~~~~~~~~~--- 689 (1949)
.++|+|+.+|+.+++++.|+++++.|+.|||+|++|||+||..|||||||||+|||+|||+++||..+|+|...++.
T Consensus 288 ~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~FPRFyFlSd~eLLeILs~~~dp~~vq~hl~K~F~~I~ 367 (3245)
T 3vkg_A 288 SGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLA 367 (3245)
T ss_dssp HHSCBHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHGGGCGGGTGGGGGGTCSSCC
T ss_pred hcCCceEeecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhccCcHHHHHHHHcCCChHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999754332
Q ss_pred -------HHHHHhHhhhcCCccccCCCCCc--cchhhHHHHHHHH-HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHH
Q psy2654 690 -------VKIAQGMYAKDGEYVEFNGDCDC--SGQANKASTEMIE-MEDVLNKLMEQAALFEINKPDFKALANARKDLKM 759 (1949)
Q Consensus 690 -------~~~~~~~~s~~ge~v~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~l~~~~~el~~ 759 (1949)
...+.||+|.+||.|+|..|+.+ .+.++.|+..+.. |...++.+.+.+.
T Consensus 368 ~l~f~~~~~~i~~m~S~eGE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~--------------------- 426 (3245)
T 3vkg_A 368 NLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESL--------------------- 426 (3245)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEEEEESSSSCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred eEEecCCCCEEEEEEcCCCCEEEeCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 12356999999999999999843 5789998877643 4444433221110
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHhHHHHhhcChhh
Q psy2654 760 AKLIWDYILVIQGWMLDWKETLWKKIDSEAMDMELKKFTKELRTLDKDLRNWDIFLQLESEIKNMIAALKAVTELQNPAI 839 (1949)
Q Consensus 760 ~~~lw~~~~~~~~~~~~w~~~~w~~id~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~lp~i~~l~~~~~ 839 (1949)
..+. .+. ..+..
T Consensus 427 ---------------~~~~------------------------~~~-----------------------------~~~~~ 438 (3245)
T 3vkg_A 427 ---------------QHFN------------------------QVD-----------------------------VNDHS 438 (3245)
T ss_dssp ---------------HHHT------------------------SCC-----------------------------TTCHH
T ss_pred ---------------HHHh------------------------hcc-----------------------------ccCcc
Confidence 0000 000 00000
Q ss_pred hhhHHHHHHHhhceeeecCCcccHHHHHhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcceEEEEEeeccccccc
Q psy2654 840 RDRHWEELMSVTKVKFSIDDSTTLKDLLDLELYKFEEEVKTIVDKSVKEQQMEKVLKDFDKVWSTLEFEYDIHARTKTPL 919 (1949)
Q Consensus 840 r~rhW~~l~~~~~~~~~~~~~~tl~~ll~l~l~~~~~~i~~i~~~a~~E~~ie~~L~~~~~~W~~~~f~~~~~~~~~~~l 919 (1949)
....| +..|+.++..++.+..+...+|.++.+... .
T Consensus 439 ~~~~w--------------------------~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~----------------~-- 474 (3245)
T 3vkg_A 439 KYSEW--------------------------VDNYPTQLVLLTSQIVWSTQVDQALGGGTL----------------Q-- 474 (3245)
T ss_dssp HHHHH--------------------------HHTSCHHHHHHHHHHHHHHHHHHHHTTSCS----------------C--
T ss_pred cHHHH--------------------------HHHCcHHHHHHHHHheeHHHHHHHHHhccc----------------c--
Confidence 11122 456788888889999999999998853210 0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhhHHHhhhhhccccc
Q psy2654 920 LRCSEELIEMLEENQINQLNALIVLLLGELTVGDRQKIMTICTIDVHSRDVVAKLIL-QKIESSGAFMWQSQLRHRWDKE 998 (1949)
Q Consensus 920 l~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~~~~~k~~~li~~~~~~rd~~~~l~~-~~i~~~~~f~W~~qlr~~~~~~ 998 (1949)
-.+....++.+.+.+..+++.++..+++++++..|.++.++|+++||+||+++.|+. .+|.+..+|+|++||||||+++
T Consensus 475 ~~~~~~~l~~~~~~~~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~RDvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~ 554 (3245)
T 3vkg_A 475 QSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDAT 554 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSTTCHHHHTSEEEEECSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHhhhheeeccc
Confidence 001234567778888899999999999999999999999999999999999999999 9999999999999999999754
Q ss_pred cccchhccchhhhcccccccccCCcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCC
Q psy2654 999 VGDCFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCS 1078 (1949)
Q Consensus 999 ~~~~~i~~~~~~~~y~~Ey~g~~~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~ 1078 (1949)
..++
T Consensus 555 ~~~~---------------------------------------------------------------------------- 558 (3245)
T 3vkg_A 555 QENV---------------------------------------------------------------------------- 558 (3245)
T ss_dssp SSSS----------------------------------------------------------------------------
T ss_pred cCCc----------------------------------------------------------------------------
Confidence 2100
Q ss_pred ccchhhhccccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCC
Q psy2654 1079 EQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYA 1158 (1949)
Q Consensus 1079 ~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~ 1158 (1949)
T Consensus 559 -------------------------------------------------------------------------------- 558 (3245)
T 3vkg_A 559 -------------------------------------------------------------------------------- 558 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhhheeeecccc
Q psy2654 1159 GRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSL 1238 (1949)
Q Consensus 1159 ~~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~v 1238 (1949)
T Consensus 559 -------------------------------------------------------------------------------- 558 (3245)
T 3vkg_A 559 -------------------------------------------------------------------------------- 558 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhHHHHHHhHHHHHHHHHHhhcCCCchhhhhcCCcchhhhcchhhhhhHHHHHHHHHHHHHHHHHHHhccceEEE
Q psy2654 1239 KNWLNNVTDSMRRTGIHCMSLAVAAYDEKPREQWLFDYPGQTALCGTQIWWTTEVSICFARLEEGYENALKDYNKKQFII 1318 (1949)
Q Consensus 1239 ~~wl~~l~~~m~~tl~~~~~~~~~~~~~~~~~~w~~~~p~Qv~l~~~qi~wt~~i~~~~~~~~~~~~~~l~~~~~~~~lv 1318 (1949)
T Consensus 559 -------------------------------------------------------------------------------- 558 (3245)
T 3vkg_A 559 -------------------------------------------------------------------------------- 558 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCchHHHHHHHHHHHhccCCCcccccccccccccchhcccccccceeecCccccCCccccccccCcceEeecccee
Q psy2654 1319 GFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGRYSDSGFLSYGSLLGDCFANICDAEF 1398 (1949)
Q Consensus 1319 ~~~~~gk~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~w~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1398 (1949)
.+.|.|+|++++|
T Consensus 559 -------------------------------------------------------------------~~~~~v~~~~~~f 571 (3245)
T 3vkg_A 559 -------------------------------------------------------------------LHKLVIHMANATF 571 (3245)
T ss_dssp -------------------------------------------------------------------GGGEEEEETTEEE
T ss_pred -------------------------------------------------------------------CceEEEEEcCcee
Confidence 1247899999999
Q ss_pred ccccccccCCCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcc
Q psy2654 1399 KFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYK 1478 (1949)
Q Consensus 1399 ~y~~ey~g~~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~ 1478 (1949)
+|||||+|+++|+|+||+|||||.++++|++.+.||++.||+|||||+++++||+++|++|++|||++++|++.|+++|.
T Consensus 572 ~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~ 651 (3245)
T 3vkg_A 572 YYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFV 651 (3245)
T ss_dssp ECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHH
T ss_pred cCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHH
Q psy2654 1479 GLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQ 1558 (1949)
Q Consensus 1479 g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~ 1558 (1949)
|++++|+|+|||||||++.++||++++++..|+.+++.
T Consensus 652 G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~------------------------------------------ 689 (3245)
T 3vkg_A 652 GLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKE------------------------------------------ 689 (3245)
T ss_dssp HHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred hHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHc------------------------------------------
Confidence 99999999999999999999999999998888776553
Q ss_pred HHhHhhhhhhccccceec-cceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHHhhhchhhHH
Q psy2654 1559 VKSVLDSVKMRKSRFNFM-GENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEAR 1637 (1949)
Q Consensus 1559 ~~~~~~~l~~~~~~~~~~-~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~ 1637 (1949)
...++.|. |.+|+++|+|++|+||||||+||++||+|||++||||+|+.||...|+|++|++.||.+++
T Consensus 690 ----------~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~ 759 (3245)
T 3vkg_A 690 ----------NSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAE 759 (3245)
T ss_dssp ----------TCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHTTTCSCHH
T ss_pred ----------CCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHHcccchHH
Confidence 34556666 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhhHHHHHHhhcccccCC--------CC------------CcHHHHHHHHHhhh
Q psy2654 1638 LLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGD--------RQ------------RPEDQVLMRALRDF 1697 (1949)
Q Consensus 1638 ~la~k~~~~~~~~~~~~s~~~~~~~~lr~l~~vl~~a~~~~~~~--------~~------------~~e~~~l~~a~~~~ 1697 (1949)
.||+|++.+|++|++++|+|.|||||||++|+||+.||.++|.. ++ .+|+.++++|++++
T Consensus 760 ~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~ 839 (3245)
T 3vkg_A 760 VLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDT 839 (3245)
T ss_dssp HHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987 44 46889999999999
Q ss_pred cCCCCCcccHHHHHHhHhccCCCCCCCCCCchhHHHHHHHHHHhcCCCcChHHHHHHHHHHHHHhcCcEEEEEecCCCCh
Q psy2654 1698 NIPKIITEDLQVFMGLIGDLFPALDVPRKRDIDFEKQVRQATIDMKLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGK 1777 (1949)
Q Consensus 1698 ~~~~l~~~d~~~~~~l~~~~fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~l~~~l~~~~~vll~G~~gsGK 1777 (1949)
++|+|+.+|.++|.+|+.|+||++..|..++..+.+++.++|.+.+|++++.|+.|++|||+++.+||||||||||||||
T Consensus 840 nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGK 919 (3245)
T 3vkg_A 840 MIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGK 919 (3245)
T ss_dssp TTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSH
T ss_pred ccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccC-CCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC---CCCCcEEEEcCCCCcc
Q psy2654 1778 SCVWKTLYKTYVNAKK-KPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST---GDGPKWMVMDGDIDPM 1853 (1949)
Q Consensus 1778 Tt~~~~La~~~~~~~~-~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~---~~~~~Wiv~Dg~~d~~ 1853 (1949)
||+|++|++|+++..+ ....+++||||+|.++|||.+|+.|+||+||+|++++|+.+... ...++|||||||+||.
T Consensus 920 Tt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~ 999 (3245)
T 3vkg_A 920 TTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPE 999 (3245)
T ss_dssp HHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHH
T ss_pred HHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHH
Confidence 9999999999987643 45677899999999999999999999999999999999987532 3456899999999999
Q ss_pred chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCCchhhHHhhhccCC
Q psy2654 1854 WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLSWTDTRE 1926 (1949)
Q Consensus 1854 w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~w~~~~~ 1926 (1949)
|||+|||||||||.|||||||||++||+||+||||+||++||||||||||||||+++++||+|++.||+++++
T Consensus 1000 WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcGmVy~~~~~l~~~~~~~swl~~~~ 1072 (3245)
T 3vkg_A 1000 WVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTLS 1072 (3245)
T ss_dssp HHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSEEEECCTTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhhheeeeEEEEcccccCchHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998643
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=5e-146 Score=1573.84 Aligned_cols=877 Identities=26% Similarity=0.451 Sum_probs=776.1
Q ss_pred HhhhhhhhhhhhHHHHhhccceeeEeeeccccCccccccHHHHHHHHHHHHHHHHhhhcCcchhhHHHHHHHHHHHHhhH
Q psy2654 481 MGVKIKRVAKRTENTYKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQVQLQNMASSKFVGYFQKEVNEWQIKLSNA 560 (1949)
Q Consensus 481 ~A~~e~~ie~~l~~~~~~w~~~~f~~~~~~~~~~~~l~~~~ei~~~led~~~~l~~m~~s~~~~~f~~~v~~w~~~L~~~ 560 (1949)
.|++|..||+.|++|...|+.++|++.+|+ ++.++++++++|++.|+|+++.+++|++|+|+++|++++..|+++|..+
T Consensus 216 ~AskE~~iE~~L~~i~~~W~~~~f~~~~~~-~~~~~l~~~d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L~~~ 294 (2695)
T 4akg_A 216 PKSDEFVIEKSLNRIKKFWKEAQYEVIEHS-SGLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKLTKL 294 (2695)
T ss_dssp C----CHHHHHHHHHHHHHTSCCCEEEECS-SSCEEEECTHHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHhhceEEEEEEec-CCeEEECCHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999995 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhhhhhhhhhHHHHHHHHHHhcCCceeEeccCcchHHHHHHHHHHHHH
Q psy2654 561 DAVISIWIEVQRTWQHLESIFIGSDDIRQQLPEDSRRFDATDKAFRALAQDMHKTPNVVIGTNKPGLYEKLETIQKDLTK 640 (1949)
Q Consensus 561 ~~il~~w~~vQ~~W~~Le~iF~~s~di~~~Lp~e~~~F~~vd~~~~~i~~~~~~~p~v~~~~~~~~~~~~L~~~~~~L~~ 640 (1949)
+++++.|.+||++|+|||+||.+++||++|||.|+++|+.||+.|+.+|+++.++|+|+.+|..+++++.|+++++.|+.
T Consensus 295 ~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~ 374 (2695)
T 4akg_A 295 SEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKM 374 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeecccccHHHHHHHHHHHHHH
Confidence 99999999999999999999987889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCccccCChhhHHHHHhcCCCCCccCCCCCCchh--------HHHHHhHhhhcCCccccCCCCCc
Q psy2654 641 CEKALAQYLETKKLTYPRFYFVSSSDLLDILANGNNPEAFRPGKDGKIN--------VKIAQGMYAKDGEYVEFNGDCDC 712 (1949)
Q Consensus 641 ~~k~L~~yLe~kR~~FPRfyFlS~~dlL~ils~~~~p~~~~~~~~~~~~--------~~~~~~~~s~~ge~v~~~~~~~~ 712 (1949)
|||+|++|||+||..|||||||||+|||+|||+++||..+|+|...++. ...+.||+|.+||.|+|..|+.+
T Consensus 375 iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~k~F~~i~~l~f~~~~i~~m~s~egE~v~~~~~v~~ 454 (2695)
T 4akg_A 375 IKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFLEDFITGVRSVEGEVLNLNEKIEL 454 (2695)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHHHHTSSEEEEEECSSEEEEEEETTSCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHHHHhhhhhhEEecCceEEEEEcCCCCEEEeCCceec
Confidence 9999999999999999999999999999999999999999998633221 23467999999999999999877
Q ss_pred cc--hhhHHHHHHHH-HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCHHH
Q psy2654 713 SG--QANKASTEMIE-MEDVLNKLMEQAALFEINKPDFKALANARKDLKMAKLIWDYILVIQGWMLDWKETLWKKIDSEA 789 (1949)
Q Consensus 713 ~~--~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~l~~~~~el~~~~~lw~~~~~~~~~~~~w~~~~w~~id~~~ 789 (1949)
.+ +++.|+..+.. |...++...+.+.
T Consensus 455 ~~~~~ve~WL~~le~~m~~tl~~~~~~~~--------------------------------------------------- 483 (2695)
T 4akg_A 455 KDSIQAQEWLNILDTEIKLSVFTQFRDCL--------------------------------------------------- 483 (2695)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 65 68888776642 4433332221100
Q ss_pred HHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHhHHHHhhcChhhhhhHHHHHHHhhceeeecCCcccHHHHHhh
Q psy2654 790 MDMELKKFTKELRTLDKDLRNWDIFLQLESEIKNMIAALKAVTELQNPAIRDRHWEELMSVTKVKFSIDDSTTLKDLLDL 869 (1949)
Q Consensus 790 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~lp~i~~l~~~~~r~rhW~~l~~~~~~~~~~~~~~tl~~ll~l 869 (1949)
..+. . ......|
T Consensus 484 --------------------------------~~~~----------~-~~~~~~w------------------------- 495 (2695)
T 4akg_A 484 --------------------------------GQIK----------D-GTDIEVV------------------------- 495 (2695)
T ss_dssp --------------------------------HHHH----------S-CCCHHHH-------------------------
T ss_pred --------------------------------HHHh----------c-cCcHHHH-------------------------
Confidence 0000 0 0001122
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcceEEEEEeecccccccccChHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy2654 870 ELYKFEEEVKTIVDKSVKEQQMEKVLKDFDKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQINQLNALIVLLLGEL 949 (1949)
Q Consensus 870 ~l~~~~~~i~~i~~~a~~E~~ie~~L~~~~~~W~~~~f~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~l~~l~~~~~~~l 949 (1949)
+..|+.++.-++.+..+...+|.++..-. ... +.+.+..+++.+... .+.+
T Consensus 496 -~~~~p~Qv~l~~~qi~wt~~ve~a~~~~~-----------------------~~~----~~~~~~~~~~~l~~~-~~~~ 546 (2695)
T 4akg_A 496 -VSKYIFQAILLSAQVMWTELVEKCLQTNQ-----------------------FSK----YWKEVDMKIKGLLDK-LNKS 546 (2695)
T ss_dssp -HTTSCHHHHHHHHHHHHHHHHHHHHHHTC-----------------------HHH----HHHHHHHHHHHHHHH-HHTS
T ss_pred -HHHChHHHHHHHHHHHHHHHHHHHHHhcc-----------------------HHH----HHHHHHHHHHHHHHH-hhcc
Confidence 45677888888888888888888886310 011 122222333444333 4567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhccccccccchhccchhhhcccccccccCCcceecCc
Q psy2654 950 TVGDRQKIMTICTIDVHSRDVVAKLILQKIESSGAFMWQSQLRHRWDKEVGDCFANICDAEFKFDHEYLGCTPRLVITPL 1029 (1949)
Q Consensus 950 ~~~~~~k~~~li~~~~~~rd~~~~l~~~~i~~~~~f~W~~qlr~~~~~~~~~~~i~~~~~~~~y~~Ey~g~~~rlv~tp~ 1029 (1949)
.+..|.++.++|++++|+||+++.|+..++.+..+|+|++|+||||+++.+++
T Consensus 547 ~~~~r~k~~~li~~~vh~rDvv~~l~~~~v~~~~~f~W~~qlR~y~~~~~~~~--------------------------- 599 (2695)
T 4akg_A 547 SDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDD--------------------------- 599 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHSCEEEECSSCSCG---------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchHhHHhcceEEEcCccccc---------------------------
Confidence 88899999999999999999999999999999999999999999997542110
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhccccchhhcccCccccccccccch
Q psy2654 1030 TDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRIS 1109 (1949)
Q Consensus 1030 ~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~ 1109 (1949)
T Consensus 600 -------------------------------------------------------------------------------- 599 (2695)
T 4akg_A 600 -------------------------------------------------------------------------------- 599 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccCchhHHHHHhh
Q psy2654 1110 VEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIML 1189 (1949)
Q Consensus 1110 ~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l 1189 (1949)
T Consensus 600 -------------------------------------------------------------------------------- 599 (2695)
T 4akg_A 600 -------------------------------------------------------------------------------- 599 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhhheeeecccccccchhhHHHHHHhHHHHHHHHHHhhcCCCc
Q psy2654 1190 VSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKNWLNNVTDSMRRTGIHCMSLAVAAYDEKPR 1269 (1949)
Q Consensus 1190 ~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~v~~wl~~l~~~m~~tl~~~~~~~~~~~~~~~~ 1269 (1949)
T Consensus 600 -------------------------------------------------------------------------------- 599 (2695)
T 4akg_A 600 -------------------------------------------------------------------------------- 599 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcCCcchhhhcchhhhhhHHHHHHHHHHHHHHHHHHHhccceEEEeccCCCchHHHHHHHHHHHhccCCCcccccc
Q psy2654 1270 EQWLFDYPGQTALCGTQIWWTTEVSICFARLEEGYENALKDYNKKQFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE 1349 (1949)
Q Consensus 1270 ~~w~~~~p~Qv~l~~~qi~wt~~i~~~~~~~~~~~~~~l~~~~~~~~lv~~~~~gk~~~~~~l~~~~~~~~~~~~~~~l~ 1349 (1949)
T Consensus 600 -------------------------------------------------------------------------------- 599 (2695)
T 4akg_A 600 -------------------------------------------------------------------------------- 599 (2695)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhcccccccceeecCccccCCccccccccCcceEeeccceeccccccccCCCCccccccchHHHHHHHHHHH
Q psy2654 1350 PKAVTNDELFGIINPSTREWKDGRYSDSGFLSYGSLLGDCFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLH 1429 (1949)
Q Consensus 1350 ~~~~~~~~l~~~~~~~~~~w~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~y~~ey~g~~~~~v~t~~t~r~~~~l~~al~ 1429 (1949)
.+.|.|++++++|+|||||+|+++|+|+||+|+|||.++++|++
T Consensus 600 ------------------------------------~~~~~v~~~~~~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~ 643 (2695)
T 4akg_A 600 ------------------------------------LNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLH 643 (2695)
T ss_dssp ------------------------------------GGTEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------cceeEEEEcCeEeeccccccCCCCcceecHHHHHHHHHHHHHHH
Confidence 01468999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHHHHH
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKS 1509 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~ 1509 (1949)
++.||++.||||||||+++++||+++|++|++|||++++|++.++++|.|++++|+|+||||||++++++||++++++..
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~ 723 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQ 723 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHH
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEE
Q psy2654 1510 VLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMF 1589 (1949)
Q Consensus 1510 i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f 1589 (1949)
|+.++. ..+..+.++|.+|++||+|++|
T Consensus 724 i~~al~----------------------------------------------------~~~~~i~~~g~~i~l~~~~~vf 751 (2695)
T 4akg_A 724 IQNGLQ----------------------------------------------------VGKSHITLLEEETPLSPHTAVF 751 (2695)
T ss_dssp HHHHHH----------------------------------------------------HTCSEEECSSSEEECCTTCEEE
T ss_pred HHHHHH----------------------------------------------------cCCcEEeeCCcEEecCCCceEE
Confidence 766544 3445677788999999999999
Q ss_pred EEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhHHH
Q psy2654 1590 ITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKS 1669 (1949)
Q Consensus 1590 ~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L~~~gf~~~~~la~k~~~~~~~~~~~~s~~~~~~~~lr~l~~ 1669 (1949)
+||||||+|+++||++||++||+|+|+.||...|++++|++.||..++.+|+|++.+|++|++++|+|.|||||||++++
T Consensus 752 iT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalks 831 (2695)
T 4akg_A 752 ITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKG 831 (2695)
T ss_dssp EEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHH
T ss_pred EEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCCCcHHHHHHHHHhhhcCCCCCcccHHHHHHhHhccCCCCCCCCCCchhHHHHHHHHHHhcCCCcChH
Q psy2654 1670 VLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKIITEDLQVFMGLIGDLFPALDVPRKRDIDFEKQVRQATIDMKLQPEDS 1749 (1949)
Q Consensus 1670 vl~~a~~~~~~~~~~~e~~~l~~a~~~~~~~~l~~~d~~~~~~l~~~~fp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1749 (1949)
||+.||.+++..+ +|+.++++|++++++|++..+|.++|.+++.|+||++..| ..+..+.+++.+++.+.++++++.
T Consensus 832 vL~~ag~lkr~~~--~e~~~l~~al~~~~lpk~~~~D~~lf~~li~dlFp~~~~~-~~~~~l~~~i~~~~~~~~l~~~~~ 908 (2695)
T 4akg_A 832 VLRNCSPLISEFG--EGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTP-LNSKAIVQCLKDAGQRSGFSMSEE 908 (2695)
T ss_dssp HHHHHHHHHHHSC--SSHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHCCCCSCC-SSSSHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHhhccCC--cHHHHHHHHHHHhccccCchhhHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHcCCcccHH
Confidence 9999999998774 6788999999999999999999999999999999999888 778889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhcc-CCCcccccCCCccCcccccccccCCCCCcccChHHH
Q psy2654 1750 FILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAK-KKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSC 1828 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~-~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~ 1828 (1949)
|+.|+.|||+++.+||||||+|||||||||+|++||++++... ..+.++++||+++|.+||||.+|+++++|+||+|++
T Consensus 909 ~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~ 988 (2695)
T 4akg_A 909 FLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTS 988 (2695)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHH
T ss_pred HHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChHHH
Confidence 9999999999999999999999999999999999999997764 345677899999999999999999999999999999
Q ss_pred HHHHHhhcCC----CCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceE
Q psy2654 1829 LIREQAQSTG----DGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGI 1904 (1949)
Q Consensus 1829 ~~r~~~~~~~----~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~ 1904 (1949)
+||+++.... ..++|||||||+|+.|||+|||||||||.|||||||||++||+||+||||+||++|||||||||||
T Consensus 989 ~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcGm 1068 (2695)
T 4akg_A 989 ILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGL 1068 (2695)
T ss_dssp HHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSEE
T ss_pred HHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCccceeeeeE
Confidence 9999876532 236899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCchhhHHhhhccCCCh-------hHHHHHHHHHHhhccc
Q psy2654 1905 LYINPQDLGWNPYVLSWTDTRESE-------SEKNILMGLFDKLTPR 1944 (1949)
Q Consensus 1905 v~~~~~~~~w~~~~~~w~~~~~~~-------~~~~~l~~l~~~~~~~ 1944 (1949)
|||++.++||+|++.+|+++++.. .....+..+|++++++
T Consensus 1069 vy~~~~~l~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1115 (2695)
T 4akg_A 1069 LWFSTDVCSISSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDM 1115 (2695)
T ss_dssp EECCSCSSCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCH
T ss_pred EEecCCcCChHHHHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHcCH
Confidence 999999999999999999875321 1245566677777764
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=8.9e-78 Score=863.94 Aligned_cols=837 Identities=28% Similarity=0.433 Sum_probs=590.0
Q ss_pred cccchhccchhhhcccccccccCCcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCC
Q psy2654 999 VGDCFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCS 1078 (1949)
Q Consensus 999 ~~~~~i~~~~~~~~y~~Ey~g~~~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~ 1078 (1949)
...|.++++++.|.|||||+|+.+|||+||+|||||.||++|+++++||+|.||+|||||||+|+||++||++|++|||+
T Consensus 559 ~~~~~v~~~~~~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~ 638 (3245)
T 3vkg_A 559 LHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCD 638 (3245)
T ss_dssp GGGEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECS
T ss_pred CceEEEEEcCceecCccccCCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccc-cCccccccccceeeecCCCC
Q psy2654 1079 EQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM-GENIKLVTTVGMFITMNPGY 1157 (1949)
Q Consensus 1079 ~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~-~~~i~l~~~~~~f~t~n~~~ 1157 (1949)
+++|+.+++++|+|++++|+|+|||||||++.++||++++++..|+.+++....+|.|. |+.+.+++++++|+||||||
T Consensus 639 ~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY 718 (3245)
T 3vkg_A 639 EGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGY 718 (3245)
T ss_dssp SCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCG
T ss_pred CCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCchhHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhhheeeeccc
Q psy2654 1158 AGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGS 1237 (1949)
Q Consensus 1158 ~~~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~ 1237 (1949)
+|+.+||+|||.+||||+|+.||...|++++|++.||.+++.+|+|++.+|.+|++++|+|+|||||||++|+|++.||+
T Consensus 719 ~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~ 798 (3245)
T 3vkg_A 719 AGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGG 798 (3245)
T ss_dssp GGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred cCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc--------hh-------------hHH-HHHHhHHHHHHHHHHhhcCCC-chhhhhc-CCcchhhhcchhhhhhHH
Q psy2654 1238 LKNWL--------NN-------------VTD-SMRRTGIHCMSLAVAAYDEKP-REQWLFD-YPGQTALCGTQIWWTTEV 1293 (1949)
Q Consensus 1238 v~~wl--------~~-------------l~~-~m~~tl~~~~~~~~~~~~~~~-~~~w~~~-~p~Qv~l~~~qi~wt~~i 1293 (1949)
+++-. ++ -|+ .+-+++++.. .+....++.+ +...+.+ ||+-..-....-.....+
T Consensus 799 lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~n-lpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai 877 (3245)
T 3vkg_A 799 IKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTM-IPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKI 877 (3245)
T ss_dssp HHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHH
T ss_pred HHHhhhhhcccccccccccccccccccccHHHHHHHHHHHhc-cCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHH
Confidence 88644 21 111 1122222211 1111111222 1222323 887543322211122222
Q ss_pred HHHHHHH-----HHHHHHHHHH-----hccceEEEeccCCCchHHHHHHHHHHHhcc-CCCcccccccccccccchhccc
Q psy2654 1294 SICFARL-----EEGYENALKD-----YNKKQFIIGFAGTGKSCVWKTLYKTYVNAK-KKPMYNDLEPKAVTNDELFGII 1362 (1949)
Q Consensus 1294 ~~~~~~~-----~~~~~~~l~~-----~~~~~~lv~~~~~gk~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~ 1362 (1949)
..+.... .....++++- .+|+.|+||++|+|||.+|+++.+++.... .......+|||+++..++||.+
T Consensus 878 ~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~ 957 (3245)
T 3vkg_A 878 QEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSL 957 (3245)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEE
T ss_pred HHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceee
Confidence 2222211 1223344433 378899999999999999999999987653 3455678999999999999999
Q ss_pred ccccceeecCccccCCc---------------------------------------------------------------
Q psy2654 1363 NPSTREWKDGRYSDSGF--------------------------------------------------------------- 1379 (1949)
Q Consensus 1363 ~~~~~~w~d~~~~~~~~--------------------------------------------------------------- 1379 (1949)
|+.++||+||.++.-.|
T Consensus 958 d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL 1037 (3245)
T 3vkg_A 958 DLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDL 1037 (3245)
T ss_dssp CTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESCC
T ss_pred cCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEeccc
Confidence 99999999993220000
Q ss_pred -------------cccccc-----------------c-------------------------------------------
Q psy2654 1380 -------------LSYGSL-----------------L------------------------------------------- 1386 (1949)
Q Consensus 1380 -------------~~~~~~-----------------~------------------------------------------- 1386 (1949)
.|..+. .
T Consensus 1038 ~~ASPATVSRcGmVy~~~~~l~~~~~~~swl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1117 (3245)
T 3vkg_A 1038 KYATLATISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQQKRNENAQLQQQQQTTITSPILTSPPTTSSSSRS 1117 (3245)
T ss_dssp TTCCHHHHHTSEEEECCTTSSCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHTC---------------------------
T ss_pred cccChhhheeeeEEEEcccccCchHHHHHHHHhCccccccchhhhhhcccccchhhhccccccccccccccccccccccc
Confidence 000000 0
Q ss_pred ----------------------------Cc-c------------eEe------------ec---------------c---
Q psy2654 1387 ----------------------------GD-C------------FAN------------IC---------------D--- 1395 (1949)
Q Consensus 1387 ----------------------------~~-~------------~v~------------~~---------------~--- 1395 (1949)
+. + .+. +. +
T Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~l~~~~~~~~i~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~~~~~~ 1197 (3245)
T 3vkg_A 1118 TTSTTSMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPM 1197 (3245)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHTSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred ccccccccchhHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCcccCccHHHHHHHHHHHHHHHhhhhcccccccccCCC
Confidence 00 0 000 00 0
Q ss_pred ------------------------------------------cee------ccccccc-------------------c--
Q psy2654 1396 ------------------------------------------AEF------KFDHEYL-------------------G-- 1406 (1949)
Q Consensus 1396 ------------------------------------------~~~------~y~~ey~-------------------g-- 1406 (1949)
..+ -|+|.+- .
T Consensus 1198 ~~~~~~~~~~~~f~faliWs~Gg~l~~~~R~~F~~~~~~~~~~~~p~~~~~v~Dy~~~~~~~~w~~W~~~v~~~~~~~~~ 1277 (3245)
T 3vkg_A 1198 SPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAITPVPANTIPLLDYSVSIDDANWSLWKNKVPSVEVETHK 1277 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCSSCCCCTTSCGGGEEECTTTCSEEETTCCC---CCCSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEECCCCeeeehhhcCCccccCCcc
Confidence 000 1222111 0
Q ss_pred --CCCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHH-HHHHhcceEEEEeCCCCCCHhhhhhhccc----
Q psy2654 1407 --CTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKD-LGKAIGIMVYVFNCSEQMDYRSCGNIYKG---- 1479 (1949)
Q Consensus 1407 --~~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~-la~~lg~~~~~~n~~~~~~~~~l~~~~~g---- 1479 (1949)
...-+|.|+-|-|....+..++..+.|++++||+|||||.++++ |++..+.+++.+|||.+++...+.+.+.+
T Consensus 1278 ~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~ 1357 (3245)
T 3vkg_A 1278 VASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEY 1357 (3245)
T ss_dssp TTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEE
T ss_pred CCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceE
Confidence 11247888889999999999999999999999999999988855 66666889999999999998887766542
Q ss_pred -----------ccccCccccc--cccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccc
Q psy2654 1480 -----------LAQTGAWGCF--DEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNR 1546 (1949)
Q Consensus 1480 -----------~~~~g~w~~~--de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~ 1546 (1949)
....|.|+++ ||+|.-..+.-..
T Consensus 1358 ~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGt-------------------------------------------- 1393 (3245)
T 3vkg_A 1358 KRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGT-------------------------------------------- 1393 (3245)
T ss_dssp EECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSC--------------------------------------------
T ss_pred EeccCCCcccCCCcCCceEEEEecccCCCCcccccc--------------------------------------------
Confidence 1123555544 5555544331000
Q ss_pred cchhhHHHHHHHHHhHhhhhhhcccccee-ccceEEEecCeeEEEEeCCCC-CCCCCChhhHhhcccccccccCCHHHHH
Q psy2654 1547 ISVEVLSVVAVQVKSVLDSVKMRKSRFNF-MGENIKLVTTVGMFITMNPGY-AGRAELPENLKALFRPCAMVVPDFALIC 1624 (1949)
Q Consensus 1547 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~i~~~~~~~~f~tmnp~~-~g~~~LP~~lk~~fr~v~~~~pD~~~i~ 1624 (1949)
.++++.+.+.++. +.+.. .+.+..-.+++.+++||||++ +||.+||+.|..+|..+++..|+...+.
T Consensus 1394 --Q~~ielLrqlld~---------~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~ 1462 (3245)
T 3vkg_A 1394 --QRVITFIRQMVEK---------GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLT 1462 (3245)
T ss_dssp --CHHHHHHHHHHHH---------SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHH
T ss_pred --ccHHHHHHHHHHc---------CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHH
Confidence 0122222222211 11221 133444569999999999965 8999999999999999999999988777
Q ss_pred HHHH---hh--hch----hhHHHHHHHHHHHHHHHHHHhc--CCCCCCCchhhHHHHHHhhccc-ccCCCCCcHHHH--H
Q psy2654 1625 EIML---VS--EGF----QEARLLSRKFITLYSLCKELLS--KQDHYDWGLRAIKSVLVVAGSL-KRGDRQRPEDQV--L 1690 (1949)
Q Consensus 1625 e~~L---~~--~gf----~~~~~la~k~~~~~~~~~~~~s--~~~~~~~~lr~l~~vl~~a~~~-~~~~~~~~e~~~--l 1690 (1949)
.|+- .. ..+ .-+..++..++.+|..++..+. .+.||.|+||.+.+++.-.-.. ........+..+ -
T Consensus 1463 ~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW 1542 (3245)
T 3vkg_A 1463 QIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLW 1542 (3245)
T ss_dssp HHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHH
Confidence 7742 11 011 1245788888999998877663 5779999999999887532111 111111112111 1
Q ss_pred HHHHhhhcCCCCC-cccHHHHHHhH----hccCCCCC-----------------CCCCCchhHHHHHHHHHH-------h
Q psy2654 1691 MRALRDFNIPKII-TEDLQVFMGLI----GDLFPALD-----------------VPRKRDIDFEKQVRQATI-------D 1741 (1949)
Q Consensus 1691 ~~a~~~~~~~~l~-~~d~~~~~~l~----~~~fp~~~-----------------~~~~~~~~~~~~~~~~~~-------~ 1741 (1949)
++=....+..+|+ .+|...|.+++ .+.||+.. ....+...+.+.+.+.+. .
T Consensus 1543 ~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v~~~~l~~~l~~~L~~yn~~~~~ 1622 (3245)
T 3vkg_A 1543 AHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPVNRSDLREYVKARLKVFYEEELD 1622 (3245)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CCCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccCCHHHHHHHHHHHHHHHHhcccC
Confidence 1222344566664 45777666655 45676532 011122233444443332 3
Q ss_pred cCCCcChHHHHHHHHHHHHHhcCc-EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCC
Q psy2654 1742 MKLQPEDSFILKVVQLVELFAVRH-SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTRE 1820 (1949)
Q Consensus 1742 ~~l~~~~~~~~k~~~l~~~l~~~~-~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~ 1820 (1949)
++|+..+..+..+..+.+.+...+ ..||||..||||+|+.+..|-.. ...+..+ +...=|| ..+
T Consensus 1623 m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~-----~~~vfqi-----~i~k~Y~-----~~~ 1687 (3245)
T 3vkg_A 1623 VPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMN-----GLSIYTI-----KVNNNYK-----SSD 1687 (3245)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHT-----TCEEECC-----C----CC-----HHH
T ss_pred ceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHh-----CCeeEEE-----eeeCCCC-----HHH
Confidence 678889999999999999999877 48999999999999999877543 1111111 1112233 246
Q ss_pred cccChHHHHHHHHhhcCCCCCcEEEEc-C-CCCccchhhHHhhhcCCcceeccCCcee----------------------
Q psy2654 1821 WKDGLFSCLIREQAQSTGDGPKWMVMD-G-DIDPMWIESLNTVMDDNKVLTLASNERI---------------------- 1876 (1949)
Q Consensus 1821 w~dG~l~~~~r~~~~~~~~~~~Wiv~D-g-~~d~~w~e~ln~~lddn~~l~l~~ge~i---------------------- 1876 (1949)
|+|-+ -++++++... .....++|+ . .++..++|.+|++|..+-+-.|-.+|.+
T Consensus 1688 f~eDL-k~l~~~aG~~--~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g~~~dt~~ 1764 (3245)
T 3vkg_A 1688 FDDDL-RMLLKRAGCK--EEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEE 1764 (3245)
T ss_dssp HHHHH-HHHHHHHHTS--CCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHHH-HHHHHHHhcC--CCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 87775 4555555332 233556664 4 3589999999999964444333322211
Q ss_pred --------ecCCCceEEEEeCCCCC-------CChhhhccceEEEecC
Q psy2654 1877 --------ALTPSMRLLFEISNLRT-------ATPATVSRAGILYINP 1909 (1949)
Q Consensus 1877 --------~~~~~~~~ifE~~~l~~-------asPa~vsr~~~v~~~~ 1909 (1949)
++..|.|+++-.+.... ..||.|++|.|-||.+
T Consensus 1765 ~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncctIDWf~~ 1812 (3245)
T 3vkg_A 1765 ELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGE 1812 (3245)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHSEEEEEES
T ss_pred HHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCceeeecCC
Confidence 34469999999887754 5699999999999984
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.3e-67 Score=760.96 Aligned_cols=834 Identities=21% Similarity=0.326 Sum_probs=585.2
Q ss_pred ccchhccchhhhcccccccccCCcceecCchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCc
Q psy2654 1000 GDCFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE 1079 (1949)
Q Consensus 1000 ~~~~i~~~~~~~~y~~Ey~g~~~rlv~tp~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~ 1079 (1949)
..|.++++++.|.|||||+|+++|+|+||+|+|||.++++|+++++||++.||+|||||+++|+||+++|++|+++||++
T Consensus 601 ~~~~v~~~~~~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e 680 (2695)
T 4akg_A 601 NSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDD 680 (2695)
T ss_dssp GTEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTS
T ss_pred ceeEEEEcCeEeeccccccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccccchhhcccCccccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCC
Q psy2654 1080 QMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAG 1159 (1949)
Q Consensus 1080 ~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~ 1159 (1949)
++|+..++++|+|++++|+|+||||||+++.++||+++++|..++++++....++.+.|..+.+++.+++|+||||||+|
T Consensus 681 ~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g 760 (2695)
T 4akg_A 681 SFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG 760 (2695)
T ss_dssp SCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred CCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHhhhccccccccCchhHHHHHhhhccchhhhhhhhhhHHHHhhhhhhhcccccccccccchhhheeeeccccc
Q psy2654 1160 RAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLK 1239 (1949)
Q Consensus 1160 ~~~lp~~l~~~fr~i~~~~pd~~~i~~~~l~~~g~~~~~~l~~kl~~~~~~~~~~~s~~~~~~~glr~~~~v~~~~g~v~ 1239 (1949)
+.+||++||++||+|+|..||.+.|+++++.+.||..++.+|+|++.+|.+|++++|+|.|||||+|++++|++.+|.++
T Consensus 761 ~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 761 RSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp SCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred cccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccchhhHHHHHHhHHHHHHHHHHhhcCCC-chhhhhc-CCcchhhhcchhhhhhHHHHHHHHH-----HHHHHHH-----
Q psy2654 1240 NWLNNVTDSMRRTGIHCMSLAVAAYDEKP-REQWLFD-YPGQTALCGTQIWWTTEVSICFARL-----EEGYENA----- 1307 (1949)
Q Consensus 1240 ~wl~~l~~~m~~tl~~~~~~~~~~~~~~~-~~~w~~~-~p~Qv~l~~~qi~wt~~i~~~~~~~-----~~~~~~~----- 1307 (1949)
+--..-+..+.+++++....... .++.+ +...+.+ ||+-..- ...-.....+..+.... .....++
T Consensus 841 r~~~~e~~~l~~al~~~~lpk~~-~~D~~lf~~li~dlFp~~~~~-~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e 918 (2695)
T 4akg_A 841 SEFGEGEKTVVESLKRVILPSLG-DTDELVFKDELSKIFDSAGTP-LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYY 918 (2695)
T ss_dssp HHSCSSHHHHHHHHHHHTGGGCC-HHHHHHHHHHHHHHCCCCSCC-SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhccccCc-hhhHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 54333333333444332111000 00111 1111221 5542211 11111111222221110 1111222
Q ss_pred HHHhccceEEEeccCCCchHHHHHHHHHHHhc-cCCCcccccccccccccchhcccccccceeecCccccCCc-------
Q psy2654 1308 LKDYNKKQFIIGFAGTGKSCVWKTLYKTYVNA-KKKPMYNDLEPKAVTNDELFGIINPSTREWKDGRYSDSGF------- 1379 (1949)
Q Consensus 1308 l~~~~~~~~lv~~~~~gk~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~w~d~~~~~~~~------- 1379 (1949)
+...+++.+++|++|+|||.+|+.+++++... ........+||++++..++||..|+.+++|+||.++.-.|
T Consensus 919 ~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~ 998 (2695)
T 4akg_A 919 MQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLFTSILRRVNDDIT 998 (2695)
T ss_dssp HHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSHHHHHHHHHTCCC
T ss_pred HHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChHHHHHHHHHhccc
Confidence 22347889999999999999999999998654 3344567889999999999999999999999993321000
Q ss_pred ----------------------------------------------------------------------cccccc----
Q psy2654 1380 ----------------------------------------------------------------------LSYGSL---- 1385 (1949)
Q Consensus 1380 ----------------------------------------------------------------------~~~~~~---- 1385 (1949)
.|.++.
T Consensus 999 ~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPATVSRcGmvy~~~~~l~~ 1078 (2695)
T 4akg_A 999 GTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSI 1078 (2695)
T ss_dssp SSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHHHHHHSEEEECCSCSSCH
T ss_pred cccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCccceeeeeEEEecCCcCCh
Confidence 000000
Q ss_pred -----------------cCc-----------------c-----------eEeec--------------------------
Q psy2654 1386 -----------------LGD-----------------C-----------FANIC-------------------------- 1394 (1949)
Q Consensus 1386 -----------------~~~-----------------~-----------~v~~~-------------------------- 1394 (1949)
... + ...+.
T Consensus 1079 ~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~ 1158 (2695)
T 4akg_A 1079 SSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDMASLTNIFTCSNDLVHILGVRTFNKLETAVQLAVHLISSYRQWF 1158 (2695)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHSSCCSSCCCHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 0 00000
Q ss_pred ---------------------------------------------cceec----ccccccc-------------------
Q psy2654 1395 ---------------------------------------------DAEFK----FDHEYLG------------------- 1406 (1949)
Q Consensus 1395 ---------------------------------------------~~~~~----y~~ey~g------------------- 1406 (1949)
+..+| |+|.+-.
T Consensus 1159 ~~~~~~~~~~~~~~~f~f~~iWs~g~~l~~~~R~~f~~~~~~~~~~~~~p~~~~~dy~~~~~~~~w~~W~~~v~~~~~~~ 1238 (2695)
T 4akg_A 1159 QNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFGHDSQELSDYSTIVIANDKLSFSSFCSEIPSVSLEA 1238 (2695)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHSCSSSCCCCSSCCCBCCSSSCCCBCCCCCCCCCCCCS
T ss_pred ccCCchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcccCCCCCCeeEEEEECCCCceeechhcCCCcccCc
Confidence 00111 2222110
Q ss_pred ----CCCCccccccchHHHHHHHHHHHhccCCCCCCCCCCChhHHH-HHHHHHhcceEEEEeCCCCCCHhhhhhhccccc
Q psy2654 1407 ----CTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETT-KDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLA 1481 (1949)
Q Consensus 1407 ----~~~~~v~t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v-~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~ 1481 (1949)
...-+|.|+-|.|....+-.++..+.|++++||||||||.++ +.++...+.+++.+||+..++...+.+.+.+.+
T Consensus 1239 ~~~~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1239 HEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp GGGSCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHB
T ss_pred cccCccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHh
Confidence 112478888899999999999999999999999999999999 566666688999999999999887766654322
Q ss_pred c--------------cCccc--cccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCccccccc
Q psy2654 1482 Q--------------TGAWG--CFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFN 1545 (1949)
Q Consensus 1482 ~--------------~g~w~--~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n 1545 (1949)
. .|.++ .+||+|....+.-..
T Consensus 1319 ~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~------------------------------------------- 1355 (2695)
T 4akg_A 1319 NYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGS------------------------------------------- 1355 (2695)
T ss_dssp CCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSC-------------------------------------------
T ss_pred hhccccCCccccCCCCCceEEEEecccccccccccCc-------------------------------------------
Confidence 1 23232 236665533331000
Q ss_pred ccchhhHHHHHHHHHhHhhhhhhcccccee--ccceEEEecCeeEEEEeCCC-CCCCCCChhhHhhcccccccccCCHHH
Q psy2654 1546 RISVEVLSVVAVQVKSVLDSVKMRKSRFNF--MGENIKLVTTVGMFITMNPG-YAGRAELPENLKALFRPCAMVVPDFAL 1622 (1949)
Q Consensus 1546 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~i~~~~~~~~f~tmnp~-~~g~~~LP~~lk~~fr~v~~~~pD~~~ 1622 (1949)
..+++.+.+.++. +.+.. .+..+.+ .++.+.++|||. .+||.+||+.|..+|+.+++..||...
T Consensus 1356 ---q~~lelLRq~le~---------gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~ 1422 (2695)
T 4akg_A 1356 ---QNVVLFLRQLMEK---------QGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKS 1422 (2695)
T ss_dssp ---CHHHHHHHHHHHT---------SSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTH
T ss_pred ---hhHHHHHHHHHhc---------CCEEEcCCCcEEEe-cCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHH
Confidence 0012211111110 11111 1222334 689999999995 599999999999999999999998776
Q ss_pred HHHHH---Hhhh-ch-----hhHHHHHHHHHHHHHHHHHHh--cCCCCCCCchhhHHHHHHhhcccccCCCCCcHHHHH-
Q psy2654 1623 ICEIM---LVSE-GF-----QEARLLSRKFITLYSLCKELL--SKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVL- 1690 (1949)
Q Consensus 1623 i~e~~---L~~~-gf-----~~~~~la~k~~~~~~~~~~~~--s~~~~~~~~lr~l~~vl~~a~~~~~~~~~~~e~~~l- 1690 (1949)
+..|+ +... .| .-+..++...+.+|..++..+ ..+.||.|+||.+.+|+.-.-.........+...++
T Consensus 1423 l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~r 1502 (2695)
T 4akg_A 1423 LSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIR 1502 (2695)
T ss_dssp HHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHH
Confidence 55544 3211 11 235667888889999988876 357899999999998875332211111111112211
Q ss_pred --HHHHhhhcCCCCC-cccHHHHHHhH----hccCCCCCCC------------------CCCchhHHHHHHHHHH-----
Q psy2654 1691 --MRALRDFNIPKII-TEDLQVFMGLI----GDLFPALDVP------------------RKRDIDFEKQVRQATI----- 1740 (1949)
Q Consensus 1691 --~~a~~~~~~~~l~-~~d~~~~~~l~----~~~fp~~~~~------------------~~~~~~~~~~~~~~~~----- 1740 (1949)
++-....+..++. .+|...|.+++ ...|+..... ......+.+.+.+.+.
T Consensus 1503 Lw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~~~l~~~l~~~l~~yn~~ 1582 (2695)
T 4akg_A 1503 LWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIEERFKTFCDE 1582 (2695)
T ss_dssp HHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecCHHHHHHHHHHHHHHHHhh
Confidence 1222344556664 56777766655 4567643210 0111223333333332
Q ss_pred --hcCCCcChHHHHHHHHHHHHHhcCc-EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCC
Q psy2654 1741 --DMKLQPEDSFILKVVQLVELFAVRH-SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPS 1817 (1949)
Q Consensus 1741 --~~~l~~~~~~~~k~~~l~~~l~~~~-~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~ 1817 (1949)
.++|+..+..+..+..+.+.+...+ .+||||++||||+|+.+..|... ...+..+. ...-||
T Consensus 1583 ~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~-----~~~~fqi~-----~~~~Y~----- 1647 (2695)
T 4akg_A 1583 ELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLN-----GLKIVQPK-----IHRHSN----- 1647 (2695)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHT-----TCEEECCC-----CCTTCC-----
T ss_pred cCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHh-----CCeeEEEE-----eeCCCC-----
Confidence 3688999999999999999999866 69999999999999999877544 11222121 112233
Q ss_pred CCCcccChHHHHHHHHhhcCCCCCcEEEE-cCC-CCccchhhHHhhhcCCcceeccCCcee-------------------
Q psy2654 1818 TREWKDGLFSCLIREQAQSTGDGPKWMVM-DGD-IDPMWIESLNTVMDDNKVLTLASNERI------------------- 1876 (1949)
Q Consensus 1818 ~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~-Dg~-~d~~w~e~ln~~lddn~~l~l~~ge~i------------------- 1876 (1949)
..+|+|-+ -++++++... ....-++| |.. ++..++|.+|++|..+-+-.|-.+|.+
T Consensus 1648 ~~~f~eDL-k~l~~~aG~~--~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~~~~~g~~~~ 1724 (2695)
T 4akg_A 1648 LSDFDMIL-KKAISDCSLK--ESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLD 1724 (2695)
T ss_dssp HHHHHHHH-HHHHHHHHHS--CCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHH-HHHHHHcCCC--CCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhHHHHHhcCCCCC
Confidence 24688775 4455555332 22244555 444 489999999999976665444443321
Q ss_pred -----------ecCCCceEEEEeCCCCC-------CChhhhccceEEEecC
Q psy2654 1877 -----------ALTPSMRLLFEISNLRT-------ATPATVSRAGILYINP 1909 (1949)
Q Consensus 1877 -----------~~~~~~~~ifE~~~l~~-------asPa~vsr~~~v~~~~ 1909 (1949)
++..|+|+++-.+.... ..||.|++|.|-||.+
T Consensus 1725 t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn~ctIdWf~~ 1775 (2695)
T 4akg_A 1725 TEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFNRCIINWMGD 1775 (2695)
T ss_dssp SHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHHHSEEEECCS
T ss_pred CHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhcceeEeecCC
Confidence 22347899999887654 4699999999999984
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.47 E-value=6.9e-13 Score=180.28 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=98.9
Q ss_pred CCCcChHHHHHHHHHHHHHhc--------CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccC----CCccCcccc
Q psy2654 1743 KLQPEDSFILKVVQLVELFAV--------RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE----PKAVTNDEL 1810 (1949)
Q Consensus 1743 ~l~~~~~~~~k~~~l~~~l~~--------~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~----p~~~~~~el 1810 (1949)
.+...+..+..+......... ..+++|+||||+|||++.+.+++.+. ..+..++ +...+..++
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~~~~l 533 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSRL 533 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSCCSSS
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhhHhhh
Confidence 344455555554444333321 13699999999999999999999872 2233332 233445678
Q ss_pred cccccCCCCCcc-cChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEE
Q psy2654 1811 FGIINPSTREWK-DGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFE 1887 (1949)
Q Consensus 1811 ~G~~~~~~~~w~-dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE 1887 (1949)
+|.- +..-++. .|.+...+++. ....|+||. .+++...+.|..+||+.+ ++-..|..+.. .++.+|+.
T Consensus 534 ~g~~-~g~~g~~~~~~l~~~~~~~------~~~vl~lDEi~~~~~~~~~~Ll~~le~~~-~~~~~g~~~~~-~~~~iI~t 604 (758)
T 1r6b_X 534 IGAP-PGYVGFDQGGLLTDAVIKH------PHAVLLLDEIEKAHPDVFNILLQVMDNGT-LTDNNGRKADF-RNVVLVMT 604 (758)
T ss_dssp CCCC-SCSHHHHHTTHHHHHHHHC------SSEEEEEETGGGSCHHHHHHHHHHHHHSE-EEETTTEEEEC-TTEEEEEE
T ss_pred cCCC-CCCcCccccchHHHHHHhC------CCcEEEEeCccccCHHHHHHHHHHhcCcE-EEcCCCCEEec-CCeEEEEe
Confidence 8852 1111122 35677777663 237899995 467888999999999755 45566766666 67777777
Q ss_pred eCCCC-------------------------CCChhhhccc-eEEEecC
Q psy2654 1888 ISNLR-------------------------TATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1888 ~~~l~-------------------------~asPa~vsr~-~~v~~~~ 1909 (1949)
+..-. ...|+.++|| .+|+|.+
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 652 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDH 652 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCC
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCC
Confidence 65422 6789999999 6677765
No 6
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.35 E-value=4.6e-12 Score=171.58 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=90.4
Q ss_pred CCCcChHHHHHHHHHHHHHhcC--------cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccc
Q psy2654 1743 KLQPEDSFILKVVQLVELFAVR--------HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGII 1814 (1949)
Q Consensus 1743 ~l~~~~~~~~k~~~l~~~l~~~--------~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~ 1814 (1949)
.+...+..+..+.......... .+++|+||||+|||++.++++..+...+ ..+..+| ..++.+.+
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~--~~~i~i~-----~s~~~~~~ 564 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE--ESMIRID-----MSEYMEKH 564 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT--TCEEEEE-----GGGGCSSC
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--cceEEEe-----chhccccc
Confidence 3444555555555444443321 1599999999999999999999873322 2223333 23333333
Q ss_pred cCCCCCcccChHHHHHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC
Q psy2654 1815 NPSTREWKDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR 1892 (1949)
Q Consensus 1815 ~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~ 1892 (1949)
... .|.++.++++. ....|+|| +.+++.....|..+||+++ ++...|.. ..+.++++|+.+..-.
T Consensus 565 ~~~-----~~~l~~~~~~~------~~~vl~lDEi~~~~~~~~~~Ll~~le~g~-~~~~~g~~-~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 565 STS-----GGQLTEKVRRK------PYSVVLLDAIEKAHPDVFNILLQVLEDGR-LTDSKGRT-VDFRNTILIMTSNVGA 631 (758)
T ss_dssp CCC--------CHHHHHHC------SSSEEEEECGGGSCHHHHHHHHHHHHHSB-CC-----C-CBCTTCEEEEEESSST
T ss_pred ccc-----cchhhHHHHhC------CCeEEEEeCccccCHHHHHHHHHHhccCe-EEcCCCCE-eccCCeEEEEeCCCCh
Confidence 211 56777777764 23689999 4568889999999998865 34444544 5557788888887422
Q ss_pred ------------CCChhhhccc-eEEEecC
Q psy2654 1893 ------------TATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1893 ------------~asPa~vsr~-~~v~~~~ 1909 (1949)
...|+.++|| .+|++.+
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~ 661 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRIDEIIVFHS 661 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSSEEEECC-
T ss_pred hhHHHHHHHHHhhCCHHHHhhCCeEEecCC
Confidence 2689999999 6777765
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.29 E-value=1.4e-11 Score=168.64 Aligned_cols=155 Identities=18% Similarity=0.284 Sum_probs=91.9
Q ss_pred CCcChHHHHHHHHHHHHHhcC--------cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC----CccCccccc
Q psy2654 1744 LQPEDSFILKVVQLVELFAVR--------HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP----KAVTNDELF 1811 (1949)
Q Consensus 1744 l~~~~~~~~k~~~l~~~l~~~--------~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p----~~~~~~el~ 1811 (1949)
+...+..+..+.......... .+|+|+||||+|||++.++++..+...+. .+..+|- ......++|
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~--~~i~i~~~~~~~~~~~s~l~ 637 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSRLI 637 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGG--GEEEECTTTCCSSGGGGGC-
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC--cEEEEechhccchhHHHHHc
Confidence 344455555555544444321 58999999999999999999998743322 2223332 333446778
Q ss_pred ccccCCCCCccc-ChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEe
Q psy2654 1812 GIINPSTREWKD-GLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEI 1888 (1949)
Q Consensus 1812 G~~~~~~~~w~d-G~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~ 1888 (1949)
|.- +...++.. |.|+.++++.. ...|+||. .+++.....|..+||+.+ ++-..|..+.. .++.+|+.+
T Consensus 638 g~~-~~~~G~~~~g~l~~~~~~~~------~~vl~lDEi~~l~~~~~~~Ll~~l~~~~-~~~~~g~~vd~-~~~iiI~ts 708 (854)
T 1qvr_A 638 GAP-PGYVGYEEGGQLTEAVRRRP------YSVILFDEIEKAHPDVFNILLQILDDGR-LTDSHGRTVDF-RNTVIILTS 708 (854)
T ss_dssp --------------CHHHHHHHCS------SEEEEESSGGGSCHHHHHHHHHHHTTTE-ECCSSSCCEEC-TTEEEEEEC
T ss_pred CCC-CCCcCccccchHHHHHHhCC------CeEEEEecccccCHHHHHHHHHHhccCc-eECCCCCEecc-CCeEEEEec
Confidence 753 22224444 78888877631 26899994 568888899999999866 34444555554 344466655
Q ss_pred CC--------------------------CCCCChhhhccc-eEEEecC
Q psy2654 1889 SN--------------------------LRTATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1889 ~~--------------------------l~~asPa~vsr~-~~v~~~~ 1909 (1949)
.- -....|..++|| .++.+.|
T Consensus 709 n~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p 756 (854)
T 1qvr_A 709 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP 756 (854)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred CcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCC
Confidence 42 234689999999 5556654
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.27 E-value=7.4e-12 Score=164.17 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=55.0
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhccccc-ccCccccccccccccch
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGLA-QTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~~-~~g~w~~~de~~~l~~~ 1498 (1949)
..|++|+||+|||||++++++|+.+|.+++.++|++-+ ..+.+..+|.-+. ...+.+++||++.+.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~ 312 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccc
Confidence 46788999999999999999999999999999997632 2445666666554 45788999999987653
No 9
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.20 E-value=6.8e-11 Score=144.12 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcc-----cc--ccc----Ccc
Q psy2654 1418 DRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYK-----GL--AQT----GAW 1486 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~-----g~--~~~----g~w 1486 (1949)
+.....+..++..+.+.+++||+|||||++++.+|+.+|.+++.++|++.+....+.+... |. ... +.+
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~v 112 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNF 112 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSE
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccE
Confidence 4455667777777888999999999999999999999999999999998877665433211 10 111 245
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhh
Q psy2654 1487 GCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSV 1566 (1949)
Q Consensus 1487 ~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l 1566 (1949)
+++||++++++++.+.+. ..++
T Consensus 113 l~iDEi~~~~~~~~~~Ll----------------------------------------------------~~l~------ 134 (331)
T 2r44_A 113 ILADEVNRSPAKVQSALL----------------------------------------------------ECMQ------ 134 (331)
T ss_dssp EEEETGGGSCHHHHHHHH----------------------------------------------------HHHH------
T ss_pred EEEEccccCCHHHHHHHH----------------------------------------------------HHHh------
Confidence 555555555555444332 2111
Q ss_pred hhccccceeccceEEEecCeeEEEEeCC-CCCCCCCChhhHhhccc-ccccccCCHHHHHHHHHh
Q psy2654 1567 KMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFR-PCAMVVPDFALICEIMLV 1629 (1949)
Q Consensus 1567 ~~~~~~~~~~~~~i~~~~~~~~f~tmnp-~~~g~~~LP~~lk~~fr-~v~~~~pD~~~i~e~~L~ 1629 (1949)
...+.+.|..+..++.|.+++|+|| ++.|...||+.|+.+|. .+.+..||.....++...
T Consensus 135 ---~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~ 196 (331)
T 2r44_A 135 ---EKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRR 196 (331)
T ss_dssp ---HSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHH
T ss_pred ---cCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHh
Confidence 1234445777788889999999999 57788889999999998 489999999988777654
No 10
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.16 E-value=3.3e-10 Score=153.46 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhh-hhhccccc--ccCccccccccccccchhhHHHHHHH
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSC-GNIYKGLA--QTGAWGCFDEFNRISVEVLSVVAVQV 1507 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l-~~~~~g~~--~~g~w~~~de~~~l~~~~ls~~~~~~ 1507 (1949)
.+++||+|||||++++.+|+.+ +.+++.+||++-++.... .+.+.++. ..++.++|||++++++++...+-+.+
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~l 603 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVL 603 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHh
Confidence 6689999999999999999998 789999999886553222 23333433 23567888888888887777654433
Q ss_pred HHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcccccee-ccceEEEecCe
Q psy2654 1508 KSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNF-MGENIKLVTTV 1586 (1949)
Q Consensus 1508 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~i~~~~~~ 1586 (1949)
.. +.+.. .|..+ ...++
T Consensus 604 e~-------------------------------------------------------------g~~~~~~g~~~-~~~~~ 621 (758)
T 3pxi_A 604 ED-------------------------------------------------------------GRLTDSKGRTV-DFRNT 621 (758)
T ss_dssp HH-------------------------------------------------------------SBCC-----CC-BCTTC
T ss_pred cc-------------------------------------------------------------CeEEcCCCCEe-ccCCe
Confidence 11 00110 12222 23578
Q ss_pred eEEEEeCCCCCC--------CCCChhhHhhcc-cccccccCCHHHHHHHH
Q psy2654 1587 GMFITMNPGYAG--------RAELPENLKALF-RPCAMVVPDFALICEIM 1627 (1949)
Q Consensus 1587 ~~f~tmnp~~~g--------~~~LP~~lk~~f-r~v~~~~pD~~~i~e~~ 1627 (1949)
.+++|.|.+... +..+++.|.++| ..|.+..|+...+.++.
T Consensus 622 ~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~ 671 (758)
T 3pxi_A 622 ILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIV 671 (758)
T ss_dssp EEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHH
T ss_pred EEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHH
Confidence 999999976543 223778888888 66777777776655544
No 11
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.12 E-value=1.8e-10 Score=156.49 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=73.2
Q ss_pred cCCCCCCCCCCCcchhHHHHHHhh----------cceEEEeeCCccchh--------hhccccchhhcc-cCcccccccc
Q psy2654 1045 MGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQMDY--------RSCGNIYKGLAQ-TGAWGCFDEF 1105 (1949)
Q Consensus 1045 ~~~~~~gp~gtGKt~~~~~la~~l----------g~~~~~~~~~~~~~~--------~~~~~~~~g~~~-~g~w~~fde~ 1105 (1949)
.+..+.||+|||||++++.++..+ +..++..+++....- ..+..++..+.. .+..+++||+
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi 287 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEI 287 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTT
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEech
Confidence 345679999999999999999988 566777666554321 112223333322 3578899999
Q ss_pred ccch------hhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCC-CCCCCCCCchhHhhhcccccccc
Q psy2654 1106 NRIS------VEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRPCAMVV 1178 (1949)
Q Consensus 1106 ~~l~------~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~-~~~~~~~lp~~l~~~fr~i~~~~ 1178 (1949)
+.+. ...... . +.++.. +. ...+.+..+.|+ .+.+.-.+++.|...|..+.+..
T Consensus 288 ~~l~~~~~~~~~~~~~-~-------~~L~~~------l~-----~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~ 348 (758)
T 1r6b_X 288 HTIIGAGAASGGQVDA-A-------NLIKPL------LS-----SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITE 348 (758)
T ss_dssp TTTTTSCCSSSCHHHH-H-------HHHSSC------SS-----SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCC
T ss_pred HHHhhcCCCCcchHHH-H-------HHHHHH------Hh-----CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCC
Confidence 9882 111111 1 111110 11 112334444444 44455667788889999999999
Q ss_pred CchhHHHHHh
Q psy2654 1179 PDFALICEIM 1188 (1949)
Q Consensus 1179 pd~~~i~~~~ 1188 (1949)
|+.....+++
T Consensus 349 p~~~e~~~il 358 (758)
T 1r6b_X 349 PSIEETVQII 358 (758)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9987766654
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.94 E-value=1.1e-09 Score=143.91 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=57.2
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC------CCCHhhhhhhccccc-ccCccccccccccccch
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE------QMDYRSCGNIYKGLA-QTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~------~~~~~~l~~~~~g~~-~~g~w~~~de~~~l~~~ 1498 (1949)
...|.+++||+|||||.+++++|..+|.+++.+++++ +.+.+.+..+|.-+. ...+.+.|||++.+-..
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~ 585 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhc
Confidence 3568899999999999999999999999999998765 455677888888774 45899999999988553
No 13
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.93 E-value=1.9e-09 Score=145.16 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=51.1
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCccccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
...+++|+||+|||||++++.+|..+|.+++.+||++-.+ ...+..+|..+. +..+.+++||++.+..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 311 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh
Confidence 3456889999999999999999999999999999966332 223444454443 3457888899887654
No 14
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.89 E-value=1.8e-09 Score=147.79 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=66.8
Q ss_pred CCCCCCCCCCCcchhHHHHHHhh----------cceEEEeeCCccch---hh-----hccccchhhccc--Ccccccccc
Q psy2654 1046 GGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQMD---YR-----SCGNIYKGLAQT--GAWGCFDEF 1105 (1949)
Q Consensus 1046 ~~~~~gp~gtGKt~~~~~la~~l----------g~~~~~~~~~~~~~---~~-----~~~~~~~g~~~~--g~w~~fde~ 1105 (1949)
+..+.||+|+|||++++.+|+.+ |..++.++|+.... +. .+..++..+... +..+++||+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi 272 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDEL 272 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 46679999999999999999998 88899999977642 11 133344444333 346778999
Q ss_pred ccchhhHH----HHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCC-CCCCCCCCchhHhhhccccccccCc
Q psy2654 1106 NRISVEVL----SVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRPCAMVVPD 1180 (1949)
Q Consensus 1106 ~~l~~~~L----s~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~-~~~~~~~lp~~l~~~fr~i~~~~pd 1180 (1949)
+.+....- ..+...+..+++. . .+.+..+.|+ .+.. -.+++.|.+.|..|.+..|+
T Consensus 273 ~~l~~~~~~~g~~~~~~~L~~~l~~-----~-------------~i~~I~at~~~~~~~-~~~d~aL~rRf~~i~l~~p~ 333 (854)
T 1qvr_A 273 HTVVGAGKAEGAVDAGNMLKPALAR-----G-------------ELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPT 333 (854)
T ss_dssp -------------------HHHHHT-----T-------------CCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCC
T ss_pred HHHhccCCccchHHHHHHHHHHHhC-----C-------------CeEEEEecCchHHhh-hccCHHHHhCCceEEeCCCC
Confidence 98862110 0111112222211 1 1123333343 2222 35667888888888888888
Q ss_pred hhHHHHHh
Q psy2654 1181 FALICEIM 1188 (1949)
Q Consensus 1181 ~~~i~~~~ 1188 (1949)
.....++.
T Consensus 334 ~~e~~~iL 341 (854)
T 1qvr_A 334 VEETISIL 341 (854)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 15
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.62 E-value=2.5e-08 Score=134.32 Aligned_cols=125 Identities=24% Similarity=0.332 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchh------hhccccchhhc-ccCccccccccccchh-------h
Q psy2654 1046 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY------RSCGNIYKGLA-QTGAWGCFDEFNRISV-------E 1111 (1949)
Q Consensus 1046 ~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~------~~~~~~~~g~~-~~g~w~~fde~~~l~~-------~ 1111 (1949)
+..+.||+|||||++++.+|..++.+++.++|.+.... ..+..+|..+. +..+..++||++.+.. +
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~ 319 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSH
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccch
Confidence 35678999999999999999999999999999775432 12333444332 2346788999976642 2
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhh--hc-cccccccCchhHHHHHh
Q psy2654 1112 VLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKA--LF-RPCAMVVPDFALICEIM 1188 (1949)
Q Consensus 1112 ~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~--~f-r~i~~~~pd~~~i~~~~ 1188 (1949)
....+...+...++..+. ...+.+..+.|+. ..+++.++. .| +.+.+..|+.....++.
T Consensus 320 ~~~~~~~~Ll~ll~g~~~--------------~~~v~vI~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 320 VERRIVSQLLTLMDGLKQ--------------RAHVIVMAATNRP----NSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp HHHHHHHHHHHHHHSSCT--------------TSCCEEEEECSCT----TTSCTTTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcc--------------cccEEEecccCCc----hhcCHHHhcccccccccccCCCCHHHHHHHH
Confidence 223333333333332221 1233444555553 356666665 45 45677788877666553
No 16
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.33 E-value=4.3e-07 Score=106.41 Aligned_cols=55 Identities=18% Similarity=0.066 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCC
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQM 1468 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~ 1468 (1949)
.+...++...+..+.....+++++||+|||||++++.+++.++ .+++.+||+.-.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 12 ANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp CHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 3455566666666667778888999999999999999999986 689999999753
No 17
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.32 E-value=1.6e-06 Score=104.40 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=88.3
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH--------hhhhhhccc---c---cccCcccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY--------RSCGNIYKG---L---AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~--------~~l~~~~~g---~---~~~g~w~~~de~~~l~ 1496 (1949)
..+.+++||+|||||++++.+|+.+|.+++.++|++-.+. ..+..++.. . +..+..+++||++.++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 129 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKIC 129 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcC
Confidence 4557799999999999999999999999999999875441 112222221 1 1246788889988887
Q ss_pred chhh----HHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcccc
Q psy2654 1497 VEVL----SVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSR 1572 (1949)
Q Consensus 1497 ~~~l----s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~ 1572 (1949)
.+.- ......+. ..+...+.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~---------------------------------------------------~~Ll~~le~--~~ 156 (310)
T 1ofh_A 130 KKGEYSGADVSREGVQ---------------------------------------------------RDLLPLVEG--ST 156 (310)
T ss_dssp CCSSCCSSHHHHHHHH---------------------------------------------------HHHHHHHHC--CE
T ss_pred ccccccccchhHHHHH---------------------------------------------------HHHHHHhcC--Ce
Confidence 6541 10000000 000111111 11
Q ss_pred ceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhccc-ccccccCCHHHHHHHHH
Q psy2654 1573 FNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFR-PCAMVVPDFALICEIML 1628 (1949)
Q Consensus 1573 ~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr-~v~~~~pD~~~i~e~~L 1628 (1949)
+..... .....++.++++.|+.......+++.|+++|- .+.+..|+...+.++.-
T Consensus 157 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 157 VSTKHG-MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp EEETTE-EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred Eecccc-cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHH
Confidence 111111 12334667777777654455678999999994 58899999887766654
No 18
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.30 E-value=3.8e-06 Score=105.69 Aligned_cols=48 Identities=13% Similarity=-0.047 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc--ceEEEEeCCC
Q psy2654 1419 RCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG--IMVYVFNCSE 1466 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg--~~~~~~n~~~ 1466 (1949)
.....+..++..+.+++++||||||||++++++|+.++ .++...+|.-
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~ 78 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF 78 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 45567778888889999999999999999999999995 4777778864
No 19
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.29 E-value=1.5e-07 Score=98.83 Aligned_cols=87 Identities=10% Similarity=0.000 Sum_probs=64.6
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccccccCcccccc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFD 1490 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~d 1490 (1949)
++...+....+..+.....+++++||+|||||++++++++.. |.+++ +||+.-.+.....+.+..+ .|.-+++|
T Consensus 7 s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a--~~g~l~ld 83 (145)
T 3n70_A 7 SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA--QGGTLVLS 83 (145)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH--TTSCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc--CCcEEEEc
Confidence 355666777777777788889999999999999999999987 77998 9998765543333322221 35567888
Q ss_pred ccccccchhhHHH
Q psy2654 1491 EFNRISVEVLSVV 1503 (1949)
Q Consensus 1491 e~~~l~~~~ls~~ 1503 (1949)
|++.++.++...+
T Consensus 84 ei~~l~~~~q~~L 96 (145)
T 3n70_A 84 HPEHLTREQQYHL 96 (145)
T ss_dssp CGGGSCHHHHHHH
T ss_pred ChHHCCHHHHHHH
Confidence 8888887766554
No 20
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.28 E-value=2.4e-07 Score=120.22 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=76.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHHHHHHHH
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLD 1512 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~~ 1512 (1949)
+++++||+|||||++++++|+.+++..+.... ..+...+..........|.|.. .+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~--~~~~~~l~~~~~~~~~~g~~~~-------~~--------------- 384 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGK--GSTAAGLTAAVVREKGTGEYYL-------EA--------------- 384 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTT--CSTTTTSEEECSSGGGTSSCSE-------EE---------------
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCC--ccccccccceeeeccccccccc-------cC---------------
Confidence 57799999999999999999999998765322 1222222111111011111100 00
Q ss_pred HHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcccccee--ccceEEEecCeeEEE
Q psy2654 1513 SVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNF--MGENIKLVTTVGMFI 1590 (1949)
Q Consensus 1513 ~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~i~~~~~~~~f~ 1590 (1949)
|.+. ..+|...++||++.+++++...+.+.+ . ...+.+ .|....++.++.+++
T Consensus 385 --------------G~l~--~A~~gil~IDEid~l~~~~q~~Ll~~l-------e--~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 385 --------------GALV--LADGGIAVIDEIDKMRDEDRVAIHEAM-------E--QQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp --------------CHHH--HHSSSEECCTTTTCCCSHHHHHHHHHH-------H--SSSEEEESSSSEEEECCCCEEEE
T ss_pred --------------CeeE--ecCCCcEEeehhhhCCHhHhhhhHHHH-------h--CCEEEEecCCcEEEecCceEEEE
Confidence 0000 012334444555555544443322222 1 122322 367788899999999
Q ss_pred EeCCC---CCCCC------CChhhHhhccc--ccccccCCH
Q psy2654 1591 TMNPG---YAGRA------ELPENLKALFR--PCAMVVPDF 1620 (1949)
Q Consensus 1591 tmnp~---~~g~~------~LP~~lk~~fr--~v~~~~pD~ 1620 (1949)
|+||. |.+.. .||+.|.++|- -+....||.
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~ 480 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGE 480 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHH
T ss_pred EcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCH
Confidence 99994 33333 89999999993 333444543
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.24 E-value=3.5e-06 Score=101.98 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=62.7
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHH
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVV 1503 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~ 1503 (1949)
.+.+++||+|||||++++++++.+|.+++.++|+.......+.+.+.+....+..+++||++.++.+....+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L 110 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHL 110 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHH
Confidence 567899999999999999999999999999999998888788888877666788999999999997765544
No 22
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.24 E-value=2.2e-06 Score=104.54 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=92.0
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHHHHHHH
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1511 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~ 1511 (1949)
.+++++||+|||||++++++|+.+|.+++.+||+.......+...+... ..|..+++||++.++.++...+-..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~lDEi~~l~~~~~~~Ll~~l---- 130 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNL-SEGDILFIDEIHRLSPAIEEVLYPAM---- 130 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTC-CTTCEEEEETGGGCCHHHHHHHHHHH----
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhc-cCCCEEEEechhhcCHHHHHHHHHHH----
Confidence 4677999999999999999999999999999998876666666666553 35778899999999876665543221
Q ss_pred HHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEE-ecCeeEEE
Q psy2654 1512 DSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKL-VTTVGMFI 1590 (1949)
Q Consensus 1512 ~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~~~f~ 1590 (1949)
..+. +...+ +.. .....+.+ .|.+.+++
T Consensus 131 ---~~~~--~~~~~------------------------------------------~~~----~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 131 ---EDYR--LDIII------------------------------------------GSG----PAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ---HTSC--C-------------------------------------------------------CCCCCCCCCCCEEEE
T ss_pred ---Hhcc--chhhc------------------------------------------ccC----ccccceecCCCCeEEEE
Confidence 1000 00000 000 00011222 24688889
Q ss_pred EeCCCCCCCCCChhhHhhcc-cccccccCCHHHHHHHH
Q psy2654 1591 TMNPGYAGRAELPENLKALF-RPCAMVVPDFALICEIM 1627 (1949)
Q Consensus 1591 tmnp~~~g~~~LP~~lk~~f-r~v~~~~pD~~~i~e~~ 1627 (1949)
+.|+.. .+++.|+.+| ..+.+..|+...+.++.
T Consensus 160 atn~~~----~l~~~L~~R~~~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 160 ATTRAG----MLSNPLRDRFGMQFRLEFYKDSELALIL 193 (338)
T ss_dssp EESCGG----GSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred eCCCcc----ccCHHHHhhcCEEeeCCCcCHHHHHHHH
Confidence 988722 3788899999 78899999888766554
No 23
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.19 E-value=7.9e-06 Score=98.83 Aligned_cols=128 Identities=17% Similarity=0.067 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccc------cCccccc
Q psy2654 1419 RCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQ------TGAWGCF 1489 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~------~g~w~~~ 1489 (1949)
.....+..++..+.. .++.||+|||||++++.+|+.+|.+++.+||++.. ...+...+.+.+. .+..+++
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vlii 111 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVI 111 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 445566666665543 24678899999999999999999999999998743 5555555544333 3567788
Q ss_pred ccccccc-chhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhh
Q psy2654 1490 DEFNRIS-VEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKM 1568 (1949)
Q Consensus 1490 de~~~l~-~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~ 1568 (1949)
||++.++ .+....+-..+..
T Consensus 112 DEi~~l~~~~~~~~L~~~le~----------------------------------------------------------- 132 (324)
T 3u61_B 112 DEFDRSGLAESQRHLRSFMEA----------------------------------------------------------- 132 (324)
T ss_dssp ESCCCGGGHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred ECCcccCcHHHHHHHHHHHHh-----------------------------------------------------------
Confidence 8888887 5544333211100
Q ss_pred ccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHH
Q psy2654 1569 RKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALI 1623 (1949)
Q Consensus 1569 ~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i 1623 (1949)
..+++.+++|.|+.. .+++.|+++|..+.+..|+...+
T Consensus 133 -------------~~~~~~iI~~~n~~~----~l~~~l~sR~~~i~~~~~~~~e~ 170 (324)
T 3u61_B 133 -------------YSSNCSIIITANNID----GIIKPLQSRCRVITFGQPTDEDK 170 (324)
T ss_dssp -------------HGGGCEEEEEESSGG----GSCTTHHHHSEEEECCCCCHHHH
T ss_pred -------------CCCCcEEEEEeCCcc----ccCHHHHhhCcEEEeCCCCHHHH
Confidence 013456777888743 58899999999999999996653
No 24
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.17 E-value=8.6e-06 Score=99.80 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=49.8
Q ss_pred CCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccc-cc
Q psy2654 1536 GAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRP-CA 1614 (1949)
Q Consensus 1536 g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~-v~ 1614 (1949)
+...++||+++++.+....+...+ ......+.-.|.......++.+++|+||.. ..+++.|+.+|.. +.
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~l-------e~~~~~~~~~g~~~~~~~~~~li~~~n~~~---~~l~~~L~~R~~~~~~ 214 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVA-------QSGENVVERDGLSIRHPARFVLVGSGNPEE---GDLRPQLLDRFGLSVE 214 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHH-------HHSEEEECCTTCCEEEECCEEEEEEECSCS---CCCCHHHHTTCSEEEE
T ss_pred CCEEEEeChhhCCHHHHHHHHHHH-------hcCceEEEecceEEeeCCceEEEEEeCCCC---CCCCHHHHhhcceEEE
Confidence 445666777777766554333322 222223334466677788999999999843 3589999999965 78
Q ss_pred cccC-CHH
Q psy2654 1615 MVVP-DFA 1621 (1949)
Q Consensus 1615 ~~~p-D~~ 1621 (1949)
+..| +..
T Consensus 215 l~~~~~~~ 222 (350)
T 1g8p_A 215 VLSPRDVE 222 (350)
T ss_dssp CCCCCSHH
T ss_pred cCCCCcHH
Confidence 8788 543
No 25
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.2e-06 Score=103.10 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=56.0
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCccccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
....|++|+||||||||.+++++|..+|.+++.+++++-.+ .+.+..+|.-+. ...+.+.|||++.+..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhcc
Confidence 45678999999999999999999999999999999987543 455666676554 3467888899998754
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.14 E-value=2.1e-06 Score=101.79 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=48.9
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCcccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l~ 1496 (1949)
...+.+++||+|||||++++.+|+.+|.+++.++|++-.+ ...+...+.-+.. ..+.+++||++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 123 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIA 123 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhc
Confidence 3456789999999999999999999999999999977433 1223333333322 23678888888774
No 27
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.13 E-value=1.2e-05 Score=91.28 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHhccC--CCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHhhhhhhccccc-------cc
Q psy2654 1418 DRCYITLSQSLHLNMG--GAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYRSCGNIYKGLA-------QT 1483 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~--~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~~l~~~~~g~~-------~~ 1483 (1949)
+.....+..++....+ .+++||+|||||++++.+++.+ +.+++.++|+...+...+.+.+.... ..
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (226)
T 2chg_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAP 102 (226)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCS
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccC
Confidence 4455666666666543 5689999999999999999987 45688999988777655544433322 23
Q ss_pred CccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHh
Q psy2654 1484 GAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1563 (1949)
Q Consensus 1484 g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~ 1563 (1949)
+..+++||++.++.+.+..+...+ +.
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l----------------------------------------------------~~-- 128 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTM----------------------------------------------------EM-- 128 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHH----------------------------------------------------HH--
T ss_pred ceEEEEeChhhcCHHHHHHHHHHH----------------------------------------------------Hh--
Confidence 556777888887766544332221 00
Q ss_pred hhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHH
Q psy2654 1564 DSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIML 1628 (1949)
Q Consensus 1564 ~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L 1628 (1949)
..+++.+++|.|.. ..+++.++.+|..+.+..|+...+.++..
T Consensus 129 ------------------~~~~~~~i~~~~~~----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 129 ------------------YSKSCRFILSCNYV----SRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (226)
T ss_dssp ------------------TTTTEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred ------------------cCCCCeEEEEeCCh----hhcCHHHHHhCceeecCCCCHHHHHHHHH
Confidence 02345677777753 35778899999989988888776655543
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.12 E-value=1.9e-06 Score=100.80 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=47.9
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCccccccccccccch
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l~~~ 1498 (1949)
...|.+++||+|||||++++.+|+.+|.+++.++|++-.+ ...+..++..+.. .++.+++||++.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~ 113 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcc
Confidence 3456789999999999999999999999999999987543 2233444444332 3678889999988543
No 29
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.08 E-value=3.4e-06 Score=102.31 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc-cccc-----------hhhcccCcc
Q psy2654 1032 RCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC-GNIY-----------KGLAQTGAW 1099 (1949)
Q Consensus 1032 r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~-~~~~-----------~g~~~~g~w 1099 (1949)
.....+..++....+..+.||+|||||++++.+|+.+|..++.++|++.+....+ +... .|.. .+.+
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l-~~~v 112 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV-FSNF 112 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT-CSSE
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc-cccE
Confidence 3444555566666677789999999999999999999999999999755432221 1111 1211 1368
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCC-CCCCCCCCchhHhhhccc-cccc
Q psy2654 1100 GCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNP-GYAGRAELPENLKALFRP-CAMV 1177 (1949)
Q Consensus 1100 ~~fde~~~l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~-~~~~~~~lp~~l~~~fr~-i~~~ 1177 (1949)
+++||+++++.++++.+...+.. ..+...|........+.+++|.|| ++.|...+++.|...|.. +.+.
T Consensus 113 l~iDEi~~~~~~~~~~Ll~~l~~---------~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~ 183 (331)
T 2r44_A 113 ILADEVNRSPAKVQSALLECMQE---------KQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLT 183 (331)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHH---------SEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECC
T ss_pred EEEEccccCCHHHHHHHHHHHhc---------CceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcC
Confidence 99999999998877665443332 124445656666777888899998 455666899999999974 7888
Q ss_pred cCchhHHHHHhhh
Q psy2654 1178 VPDFALICEIMLV 1190 (1949)
Q Consensus 1178 ~pd~~~i~~~~l~ 1190 (1949)
.|+.....+++..
T Consensus 184 ~p~~~~~~~il~~ 196 (331)
T 2r44_A 184 YLDKESELEVMRR 196 (331)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8988877766433
No 30
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.07 E-value=4.7e-06 Score=103.34 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=49.6
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccccc-Cccccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQT-GAWGCFDEFNRISV 1497 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~~-g~w~~~de~~~l~~ 1497 (1949)
..+.+|+||+|||||++++.+|+.+|.+++.++|++-.+ ...+..+|..+... ++.+++||++.+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc
Confidence 356789999999999999999999999999999987543 22334444444333 36888899988743
No 31
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.07 E-value=5.3e-06 Score=106.80 Aligned_cols=136 Identities=18% Similarity=0.121 Sum_probs=79.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhh---------------hhhcccccccCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC---------------GNIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l---------------~~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
..+++||+|||||++++.+|..++.++..++|+...+...+ .+.|..+...+..+.+||++.++.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~ 189 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSS 189 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhh
Confidence 45689999999999999999999999999999875443222 112222222334666777777765
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhcc-ccceec
Q psy2654 1498 EVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRK-SRFNFM 1576 (1949)
Q Consensus 1498 ~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~~~ 1576 (1949)
+.-.... ..+...+.... ..|.-.
T Consensus 190 ~~~~~~~-------------------------------------------------------~~LL~~ld~~~~~~~~~~ 214 (543)
T 3m6a_A 190 DFRGDPS-------------------------------------------------------SAMLEVLDPEQNSSFSDH 214 (543)
T ss_dssp ---------------------------------------------------------------CCGGGTCTTTTTBCCCS
T ss_pred hhccCHH-------------------------------------------------------HHHHHHHhhhhcceeecc
Confidence 4211000 00011111111 111101
Q ss_pred cceEEEe-cCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHH
Q psy2654 1577 GENIKLV-TTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIM 1627 (1949)
Q Consensus 1577 ~~~i~~~-~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~ 1627 (1949)
+.....+ .++.+++|.|+.+ .+|+.|+.+|..+.+..|+.....++.
T Consensus 215 ~~~~~~~~~~v~iI~ttN~~~----~l~~aL~~R~~vi~~~~~~~~e~~~Il 262 (543)
T 3m6a_A 215 YIEETFDLSKVLFIATANNLA----TIPGPLRDRMEIINIAGYTEIEKLEIV 262 (543)
T ss_dssp SSCCCCBCSSCEEEEECSSTT----TSCHHHHHHEEEEECCCCCHHHHHHHH
T ss_pred cCCeeecccceEEEeccCccc----cCCHHHHhhcceeeeCCCCHHHHHHHH
Confidence 1111222 5788999999854 789999999999999999887655554
No 32
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.05 E-value=7.7e-07 Score=93.09 Aligned_cols=86 Identities=9% Similarity=-0.039 Sum_probs=62.6
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFN 1493 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~ 1493 (1949)
.+...++...+..+.....+++++||+|||||++++++++..+ +++.+||+.-.+ ......+.- + .|..+++||++
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~-a-~~~~l~lDei~ 85 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELLQK-A-EGGVLYVGDIA 85 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHHHH-T-TTSEEEEEECT
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHHHh-C-CCCeEEEeChH
Confidence 3456677777777778888899999999999999999999988 999999986322 112222221 1 24567888888
Q ss_pred cccchhhHHH
Q psy2654 1494 RISVEVLSVV 1503 (1949)
Q Consensus 1494 ~l~~~~ls~~ 1503 (1949)
.++.+....+
T Consensus 86 ~l~~~~q~~L 95 (143)
T 3co5_A 86 QYSRNIQTGI 95 (143)
T ss_dssp TCCHHHHHHH
T ss_pred HCCHHHHHHH
Confidence 8887765544
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.05 E-value=7.1e-06 Score=98.50 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=49.9
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHh-cceEEEEeCCCCCC------Hhhhhhhccccc-ccCccccccccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAI-GIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~l-g~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
.|.+++||+|||||++++++|+.+ |.+++.++|++-.+ .+.+..+|.-+. ...+.+++||++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc
Confidence 567899999999999999999999 99999999987433 233444444333 2356788888887744
No 34
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.9e-06 Score=101.08 Aligned_cols=69 Identities=25% Similarity=0.272 Sum_probs=54.6
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCccccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
....|++|+||+|||||.+++++|..+|.+++.+++++-.+ .+.+..+|.-+. ...+.+.|||++.+..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc
Confidence 34678999999999999999999999999999999987443 344555565553 3468888899987644
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.03 E-value=2.8e-06 Score=102.09 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcc-------eEEEEeCCCCCC------HhhhhhhcccccccCccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGI-------MVYVFNCSEQMD------YRSCGNIYKGLAQTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~-------~~~~~n~~~~~~------~~~l~~~~~g~~~~g~w~~~de~~~l 1495 (1949)
+.+++||+|||||++++.+|+.++. +++.++|++-.. ...+...+..+ .+..+++||++.+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l 142 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYL 142 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--TTSEEEEETGGGS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--CCCEEEEEChhhh
Confidence 4679999999999999999999966 899999876432 11222222222 3567788888877
No 36
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.02 E-value=4.7e-06 Score=101.56 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=50.5
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhcccccc-cCccccccccccccch
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGLAQ-TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~~~-~g~w~~~de~~~l~~~ 1498 (1949)
..|.+++||+|||||++++++|+.+|.+++.++|++-. ..+.+..+|..+.. .++.+++||++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 158 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 158 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccc
Confidence 35678999999999999999999999999999997521 22333444443322 4678888999988654
No 37
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=3.2e-06 Score=103.62 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=53.7
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccc-cccCcccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGL-AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~-~~~g~w~~~de~~~l~ 1496 (1949)
....|++|+||||||||.+++++|..+|.+++.+++++-.+ .+.+..+|.-+ ..+.+.+.|||++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~ 287 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIG 287 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhh
Confidence 34678999999999999999999999999999999987433 34455555544 3457888889988663
No 38
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=6.6e-06 Score=100.15 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=55.4
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccc-cccCccccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGL-AQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~-~~~g~w~~~de~~~l~~ 1497 (1949)
....|++|+||+|||||.+++++|..+|.+++.++|++-++ .+.+..+|.-+ ....+.+.|||++.+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccc
Confidence 45688999999999999999999999999999999987443 34555666654 34578888999987754
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.00 E-value=6.5e-05 Score=86.32 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=58.8
Q ss_pred CccccccchHHHHHHHHHHHh--ccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhhhcccccccC
Q psy2654 1410 RLVITPLTDRCYITLSQSLHL--NMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKGLAQTG 1484 (1949)
Q Consensus 1410 ~~v~t~~t~r~~~~l~~al~~--~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~~~~g~~~~g 1484 (1949)
.++..+.....+..+...+.. ..+.+++||+|||||++++.+|+.++ .+++.++|++-.+. +.+.+.. ....
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~ 105 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--STALLEG-LEQF 105 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--CGGGGTT-GGGS
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHHh-ccCC
Confidence 344445556667777666664 45567999999999999999999887 68889998764321 2222222 2446
Q ss_pred ccccccccccccchh
Q psy2654 1485 AWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1485 ~w~~~de~~~l~~~~ 1499 (1949)
..+++||++.++...
T Consensus 106 ~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 106 DLICIDDVDAVAGHP 120 (242)
T ss_dssp SEEEEETGGGGTTCH
T ss_pred CEEEEeccccccCCH
Confidence 778888888886654
No 40
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.99 E-value=1.1e-05 Score=96.93 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=48.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhc---------------ccccc--cCcccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIY---------------KGLAQ--TGAWGCFDEF 1492 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~---------------~g~~~--~g~w~~~de~ 1492 (1949)
+.+++||+|||||++++.+|+.+ +.+++.++|+.-.+.....+.+ .++.. .|..+++||+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi 128 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAI 128 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeCh
Confidence 56799999999999999999999 6679999998765543333222 22211 2345666666
Q ss_pred ccccchhhHHH
Q psy2654 1493 NRISVEVLSVV 1503 (1949)
Q Consensus 1493 ~~l~~~~ls~~ 1503 (1949)
+.+++++...+
T Consensus 129 ~~l~~~~~~~L 139 (311)
T 4fcw_A 129 EKAHPDVFNIL 139 (311)
T ss_dssp GGSCHHHHHHH
T ss_pred hhcCHHHHHHH
Confidence 66666555443
No 41
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.97 E-value=5e-06 Score=101.86 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=90.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhc----cCCCcccccC-----------------------CCccCccccccccc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNA----KKKPMYNDLE-----------------------PKAVTNDELFGIIN 1815 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~----~~~~~~~~i~-----------------------p~~~~~~el~G~~~ 1815 (1949)
...+|+|+||||+|||++++.+++.+... +....+...+ |...+..+++|..+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 123 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD 123 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech
Confidence 45679999999999999999999876321 0011100000 12233345666532
Q ss_pred C------CCCCcccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEE
Q psy2654 1816 P------STREWKDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFE 1887 (1949)
Q Consensus 1816 ~------~~~~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE 1887 (1949)
. ....+..|.+..+ ....+++|. .+++...+.|..+|++........|.....|.+++++..
T Consensus 124 ~~~~~~~~~~~~~~g~~~~a----------~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~ 193 (350)
T 1g8p_A 124 IERAISKGEKAFEPGLLARA----------NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGS 193 (350)
T ss_dssp HHHHHHHCGGGEECCHHHHH----------TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEE
T ss_pred hhhhhcCCceeecCceeeec----------CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEE
Confidence 1 1123455655432 126899995 456777788888888766555667778888888888887
Q ss_pred eCCCC-CCChhhhccceE-EEecCC
Q psy2654 1888 ISNLR-TATPATVSRAGI-LYINPQ 1910 (1949)
Q Consensus 1888 ~~~l~-~asPa~vsr~~~-v~~~~~ 1910 (1949)
+.... ...|+..+||++ +.+.+-
T Consensus 194 ~n~~~~~l~~~L~~R~~~~~~l~~~ 218 (350)
T 1g8p_A 194 GNPEEGDLRPQLLDRFGLSVEVLSP 218 (350)
T ss_dssp ECSCSCCCCHHHHTTCSEEEECCCC
T ss_pred eCCCCCCCCHHHHhhcceEEEcCCC
Confidence 76534 789999999998 777764
No 42
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.95 E-value=3.3e-05 Score=93.47 Aligned_cols=188 Identities=16% Similarity=0.138 Sum_probs=108.7
Q ss_pred CCCCCCCCCCChhHHHHHH-HHHhcceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchhhHHHHHHHHHHH
Q psy2654 1433 GGAPAGPAGTGKTETTKDL-GKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1511 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~l-a~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ls~~~~~~~~i~ 1511 (1949)
.+++.|++|| ||.+++.+ ++.+.+-.++-. ...+...|...+.+. +| |.. .+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g--~~ss~~gLt~s~r~~--tG-~~~-------~~-------------- 293 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDL--RRTELTDLTAVLKED--RG-WAL-------RA-------------- 293 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEG--GGCCHHHHSEEEEES--SS-EEE-------EE--------------
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecC--CCCCccCceEEEEcC--CC-ccc-------CC--------------
Confidence 4779999999 99999999 998888665421 111122221112221 23 311 01
Q ss_pred HHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEE
Q psy2654 1512 DSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFIT 1591 (1949)
Q Consensus 1512 ~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~t 1591 (1949)
|.+. .-+|.-.|+||||++++.+.+.+...++. +.+.+.|. .++..|.+++|
T Consensus 294 ---------------G~l~--LAdgGvl~lDEIn~~~~~~qsaLlEaMEe---------~~VtI~G~--~lparf~VIAA 345 (506)
T 3f8t_A 294 ---------------GAAV--LADGGILAVDHLEGAPEPHRWALMEAMDK---------GTVTVDGI--ALNARCAVLAA 345 (506)
T ss_dssp ---------------CHHH--HTTTSEEEEECCTTCCHHHHHHHHHHHHH---------SEEEETTE--EEECCCEEEEE
T ss_pred ---------------CeeE--EcCCCeeehHhhhhCCHHHHHHHHHHHhC---------CcEEECCE--EcCCCeEEEEE
Confidence 1111 11355566688888887777665554433 34444565 88999999999
Q ss_pred eCCCCC-C------CCCChhhHhhcccccc--cccCCH-------------HHHHHHHHhhh----chhhHHHHHHHHHH
Q psy2654 1592 MNPGYA-G------RAELPENLKALFRPCA--MVVPDF-------------ALICEIMLVSE----GFQEARLLSRKFIT 1645 (1949)
Q Consensus 1592 mnp~~~-g------~~~LP~~lk~~fr~v~--~~~pD~-------------~~i~e~~L~~~----gf~~~~~la~k~~~ 1645 (1949)
+||-+. + .-.||+.+.++|--+. +..||. ..+.+...++. ...-+......++.
T Consensus 346 ~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 346 INPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEH 425 (506)
T ss_dssp ECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHH
T ss_pred eCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHH
Confidence 999531 1 2389999999994332 233332 22333333322 22334556678888
Q ss_pred HHHHHHHHhc-----CCCCCCCchhhHHHHHHhhc
Q psy2654 1646 LYSLCKELLS-----KQDHYDWGLRAIKSVLVVAG 1675 (1949)
Q Consensus 1646 ~~~~~~~~~s-----~~~~~~~~lr~l~~vl~~a~ 1675 (1949)
+|...+..-. ....+..+.|.+.++++.|.
T Consensus 426 ~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~ 460 (506)
T 3f8t_A 426 WYETRREEVEERLGMGLPTLPVTRRQLESVERLAK 460 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccccccccccccHHHHHHHHHHHH
Confidence 8887765211 12345667898888888763
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.95 E-value=1.3e-05 Score=97.94 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=49.0
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH------hhhhhhccccc-ccCccccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY------RSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~------~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
..+.+++||+|||||++++.+|+.+|.+++.++|++-.+. ..+..++..+. ..++.+++||++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc
Confidence 4567799999999999999999999999999999875431 12223333222 2357788888887754
No 44
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.95 E-value=3e-06 Score=100.76 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCC
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMD 1469 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~ 1469 (1949)
.|...+++..+..+.....+++++||+|||||+++++++... +.|++.+||+.-.+
T Consensus 8 s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 8 SPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE 66 (304)
T ss_dssp SHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh
Confidence 456667777777777778888999999999999999999976 67899999987543
No 45
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.95 E-value=1.4e-05 Score=98.84 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=46.3
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHh----hhhhhcccc---------cccCccccccccccccch
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYR----SCGNIYKGL---------AQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~----~l~~~~~g~---------~~~g~w~~~de~~~l~~~ 1498 (1949)
.+.+++||+|||||++++.+|+.+|.+++.++|+.-.... ...+.+.++ ...+..+++||++.++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 4567899999999999999999999999999998743211 111122211 124778889999988776
No 46
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=1e-05 Score=99.00 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=54.1
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCcccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~ 1496 (1949)
....|.+|+||||||||.+++++|..+|.+++.++|++-.+ ...+..+|.-+. ...+.+.+||++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA 278 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhh
Confidence 35678899999999999999999999999999999988543 345666666553 346788888887653
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=9.6e-06 Score=99.46 Aligned_cols=69 Identities=25% Similarity=0.235 Sum_probs=55.4
Q ss_pred HhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccc-cccCccccccccccccc
Q psy2654 1429 HLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGL-AQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1429 ~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~-~~~g~w~~~de~~~l~~ 1497 (1949)
....|++|+||||||||.+++++|..+|.+++.++|++-++ .+.+..+|.-+ ....+.+.+||++.+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccccc
Confidence 34678999999999999999999999999999999988544 34455566554 34578888999997754
No 48
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.93 E-value=5.5e-06 Score=99.79 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=50.4
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCccccccccccccchh
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l~~~~ 1499 (1949)
.|.+++||+|||||++++++|+.+|.+++.++|++-.+ ...+..+|..+.. .++.+++||++.+....
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~ 126 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccC
Confidence 45789999999999999999999999999999976321 2233444443333 34688899999887643
No 49
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.91 E-value=9e-06 Score=99.84 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=50.7
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhh----hhhhcccc---------cccCcccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRS----CGNIYKGL---------AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~----l~~~~~g~---------~~~g~w~~~de~~~l~ 1496 (1949)
...+.+++||+|||||++++.+|+.+|.+++.++|++-..... ..+.+.++ ...++.+.+||++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 3456779999999999999999999999999999986443211 12222222 1346788899999887
Q ss_pred ch
Q psy2654 1497 VE 1498 (1949)
Q Consensus 1497 ~~ 1498 (1949)
..
T Consensus 130 ~~ 131 (363)
T 3hws_A 130 RK 131 (363)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 50
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=1.4e-05 Score=93.11 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=49.8
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCccccccccccccch
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l~~~ 1498 (1949)
..|.+++||+|||||++++.+|..+|.+++.++|++-.+ ...+..+|..+.. ..+.+++||++.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~ 119 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccC
Confidence 456789999999999999999999999999999987432 2334444444332 2357788888766543
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.88 E-value=2.5e-06 Score=94.38 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhc--cCCCCCCCCCCChhHHHHHHHHHh----------cceEEEEeCCCCCC----H----hhhhhhcc
Q psy2654 1419 RCYITLSQSLHLN--MGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQMD----Y----RSCGNIYK 1478 (1949)
Q Consensus 1419 r~~~~l~~al~~~--~~~~l~G~~g~GKt~~v~~la~~l----------g~~~~~~n~~~~~~----~----~~l~~~~~ 1478 (1949)
..+..+..++... .+.+++||+|||||++++.+++.+ |.+++.++|+.... . ..+.+++.
T Consensus 29 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1jbk_A 29 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 108 (195)
T ss_dssp HHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHH
Confidence 4455555666544 446799999999999999999997 78999998865321 1 12223333
Q ss_pred cccc--cCcccccccccccc
Q psy2654 1479 GLAQ--TGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1479 g~~~--~g~w~~~de~~~l~ 1496 (1949)
.+.. .+..+++||++.+.
T Consensus 109 ~~~~~~~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 109 DLAKQEGNVILFIDELHTMV 128 (195)
T ss_dssp HHHHSTTTEEEEEETGGGGT
T ss_pred HHhhcCCCeEEEEeCHHHHh
Confidence 2222 23456777777664
No 52
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.87 E-value=7.5e-06 Score=96.91 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=47.9
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccc-----cccCccccccccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGL-----AQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~-----~~~g~w~~~de~~~l~~ 1497 (1949)
.|.+++||+|||||++++++|+.+|.+++.++|++-.+ ...+.+.|.-+ ...++.+++||++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 45678899999999999999999999999999976322 23344455444 33578899999988765
No 53
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=3.3e-05 Score=93.31 Aligned_cols=134 Identities=15% Similarity=0.080 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhccC--CCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHhhhhhhccccc-------cc-
Q psy2654 1419 RCYITLSQSLHLNMG--GAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYRSCGNIYKGLA-------QT- 1483 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~--~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~~l~~~~~g~~-------~~- 1483 (1949)
.....+..++..+.+ .+++||+|+|||++++.+|+.+ +.+++.+||++......+...+..+. ..
T Consensus 28 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 107 (323)
T 1sxj_B 28 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGK 107 (323)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTC
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCC
Confidence 445566667776554 5688999999999999999997 45688899988766655555444322 22
Q ss_pred CccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHh
Q psy2654 1484 GAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1563 (1949)
Q Consensus 1484 g~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~ 1563 (1949)
...+++||++.++.+....+...+
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~l-------------------------------------------------------- 131 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTM-------------------------------------------------------- 131 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHH--------------------------------------------------------
T ss_pred ceEEEEECcccCCHHHHHHHHHHH--------------------------------------------------------
Confidence 456777888877765433221111
Q ss_pred hhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHH
Q psy2654 1564 DSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIML 1628 (1949)
Q Consensus 1564 ~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L 1628 (1949)
.. ..+++.++++.|+ ...+++.+++++..+.+..|+...+.++.-
T Consensus 132 ---e~-------------~~~~~~~il~~~~----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 176 (323)
T 1sxj_B 132 ---EL-------------YSNSTRFAFACNQ----SNKIIEPLQSQCAILRYSKLSDEDVLKRLL 176 (323)
T ss_dssp ---HH-------------TTTTEEEEEEESC----GGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred ---hc-------------cCCCceEEEEeCC----hhhchhHHHhhceEEeecCCCHHHHHHHHH
Confidence 00 0134455666665 236789999999999999998887666553
No 54
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.86 E-value=2.1e-06 Score=94.50 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHh--ccCCCCCCCCCCChhHHHHHHHHHh----------cceEEEEeCCCCCCH--------hhhhhhcc
Q psy2654 1419 RCYITLSQSLHL--NMGGAPAGPAGTGKTETTKDLGKAI----------GIMVYVFNCSEQMDY--------RSCGNIYK 1478 (1949)
Q Consensus 1419 r~~~~l~~al~~--~~~~~l~G~~g~GKt~~v~~la~~l----------g~~~~~~n~~~~~~~--------~~l~~~~~ 1478 (1949)
..+..+..++.. ..+++++||+|||||++++.+++.+ |.+++.++|+..... ..+.+++.
T Consensus 29 ~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (187)
T 2p65_A 29 TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILK 108 (187)
T ss_dssp HHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHH
Confidence 344555555554 3446789999999999999999998 888888887543210 11222232
Q ss_pred cccc--cCcccccccccccc
Q psy2654 1479 GLAQ--TGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1479 g~~~--~g~w~~~de~~~l~ 1496 (1949)
.+.. .+..+++||++.+.
T Consensus 109 ~~~~~~~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 109 EVQDAEGQVVMFIDEIHTVV 128 (187)
T ss_dssp HHHHTTTSEEEEETTGGGGS
T ss_pred HHHhcCCceEEEEeCHHHhc
Confidence 2222 23466667776665
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.85 E-value=7.8e-06 Score=97.35 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=50.2
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhcccccc-cCccccccccccccch
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGLAQ-TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~~~-~g~w~~~de~~~l~~~ 1498 (1949)
...|.+++||+|||||++++.+|..+|.+++.++|++-. ....+..+|..+.. ..+.+++||++.+...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~ 123 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 123 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhc
Confidence 356678999999999999999999999999999987522 12233444444332 3467888888876543
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.82 E-value=9.3e-06 Score=95.20 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=50.8
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhcccccc-cCccccccccccccch
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQ-TGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~-~g~w~~~de~~~l~~~ 1498 (1949)
..|.+++||+|||||++++.+|+.++.+++.++|++-.+ ...+..+|..+.. ..+.+++||++.++..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 118 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKS 118 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhccc
Confidence 567889999999999999999999999999999987432 1223334443332 3467889999988764
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.82 E-value=7.3e-06 Score=103.40 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=50.9
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccccc-Cccccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLAQT-GAWGCFDEFNRISV 1497 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~~~-g~w~~~de~~~l~~ 1497 (1949)
...+++++||+|||||++++++|+.+|.+++.+||++-.+ ...+...|.++... .+.+++||++.+..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcc
Confidence 3456889999999999999999999999999999965322 22344455544332 35788899887765
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=3.6e-05 Score=94.35 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=40.4
Q ss_pred HHHHHHHHhc--cCCCCCCCCCCChhHHHHHHHHHhcc------eEEEEeCCCCCCHhhhhhh
Q psy2654 1422 ITLSQSLHLN--MGGAPAGPAGTGKTETTKDLGKAIGI------MVYVFNCSEQMDYRSCGNI 1476 (1949)
Q Consensus 1422 ~~l~~al~~~--~~~~l~G~~g~GKt~~v~~la~~lg~------~~~~~n~~~~~~~~~l~~~ 1476 (1949)
..+..++..+ .+.+++||+|||||++++.+|+.++. .++.+||++......+...
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 109 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHH
Confidence 4455555555 33668999999999999999999874 4888899886555544433
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.79 E-value=4.6e-05 Score=91.45 Aligned_cols=134 Identities=17% Similarity=0.287 Sum_probs=86.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCC----ccCcccccccccCCCCCccc-ChHHHHHHHHhhcCCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPK----AVTNDELFGIINPSTREWKD-GLFSCLIREQAQSTGD 1839 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~----~~~~~el~G~~~~~~~~w~d-G~l~~~~r~~~~~~~~ 1839 (1949)
.+++|+||||||||++++.+++.+...... +..++.. .....+++|... ...++.. |.+..+++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~----- 119 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA--MIRIDMTEYMEKHAVSRLIGAPP-GYVGYEEGGQLTEAVRRRP----- 119 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG--EEEEEGGGCCSTTHHHHHHCCCT-TSTTTTTCCHHHHHHHHCS-----
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc--eEEeecccccccccHHHhcCCCC-ccccccccchHHHHHHhCC-----
Confidence 689999999999999999999987433221 2222222 222345777542 2224443 77877776541
Q ss_pred CCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCC--------------------------C
Q psy2654 1840 GPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISN--------------------------L 1891 (1949)
Q Consensus 1840 ~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~--------------------------l 1891 (1949)
...++||. .+++.....|-.+|++... .-..|..+.++ ++.+|+.+.. .
T Consensus 120 -~~vl~lDEi~~l~~~~~~~Ll~~le~~~~-~~~~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 196 (311)
T 4fcw_A 120 -YSVILFDAIEKAHPDVFNILLQMLDDGRL-TDSHGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 196 (311)
T ss_dssp -SEEEEEETGGGSCHHHHHHHHHHHHHSEE-ECTTSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHH
T ss_pred -CeEEEEeChhhcCHHHHHHHHHHHhcCEE-EcCCCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 26899995 3567777888888876543 33445555554 3447777665 3
Q ss_pred CCCChhhhccc-eEEEecC
Q psy2654 1892 RTATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1892 ~~asPa~vsr~-~~v~~~~ 1909 (1949)
....|+.++|| .++.+.+
T Consensus 197 ~~~~~~l~~R~~~~~~~~p 215 (311)
T 4fcw_A 197 QHFRPEFLNRLDEIVVFRP 215 (311)
T ss_dssp HHSCHHHHTTCSEEEECCC
T ss_pred HhCCHHHHhcCCeEEEeCC
Confidence 46889999999 4566655
No 60
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.79 E-value=1.8e-05 Score=99.50 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=46.5
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHh-cceEEEEeCCCCCCH------hhhhhhccccc-ccCccccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAI-GIMVYVFNCSEQMDY------RSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~l-g~~~~~~n~~~~~~~------~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
..|.+++||+|||||++++++|+.+ |.+++.++|++-.+. ..+..+|.-+. ...+.+++||++.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc
Confidence 3567899999999999999999999 999999999874331 22333333222 2356777888887743
No 61
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=9.2e-05 Score=95.05 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=50.7
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccc-------------------cccCcccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGL-------------------AQTGAWGCFDEF 1492 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~-------------------~~~g~w~~~de~ 1492 (1949)
.+.+++||+|||||++++.+|+.+|.+++.+||++......+...+.++ ...+..+++||+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence 4567899999999999999999999999999999877654443333321 123456677777
Q ss_pred ccccchhh
Q psy2654 1493 NRISVEVL 1500 (1949)
Q Consensus 1493 ~~l~~~~l 1500 (1949)
+.++.+..
T Consensus 158 d~l~~~~~ 165 (516)
T 1sxj_A 158 DGMSGGDR 165 (516)
T ss_dssp GGCCTTST
T ss_pred CccchhhH
Confidence 77765443
No 62
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.76 E-value=5.7e-05 Score=89.96 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=50.6
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH------hhhhhhccccc-ccCccccccccccccchh
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY------RSCGNIYKGLA-QTGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~------~~l~~~~~g~~-~~g~w~~~de~~~l~~~~ 1499 (1949)
..+.+++||+|||||++++.+|+.+|.+++.++|++-.+. ..+..++..+. ..++.+++||++.+....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~ 129 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER 129 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccc
Confidence 4567799999999999999999999999999999875431 12222332222 245788889998886543
No 63
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.75 E-value=8.6e-05 Score=85.44 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhcc---CCCCCCCCCCChhHHHHHHHHHhcce
Q psy2654 1418 DRCYITLSQSLHLNM---GGAPAGPAGTGKTETTKDLGKAIGIM 1458 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~---~~~l~G~~g~GKt~~v~~la~~lg~~ 1458 (1949)
++....+..++..+. ..+++||+|+|||++++.+++.++..
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445566666777665 35689999999999999999998753
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.75 E-value=3.5e-05 Score=90.66 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhccCCC--CCCCCCCChhHHHHHHHHHhc----------ceEEEEeCCCCCCH
Q psy2654 1418 DRCYITLSQSLHLNMGGA--PAGPAGTGKTETTKDLGKAIG----------IMVYVFNCSEQMDY 1470 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~--l~G~~g~GKt~~v~~la~~lg----------~~~~~~n~~~~~~~ 1470 (1949)
.+.+..+..++....|+. ++||||||||++++.+++.++ ..++.+||....+.
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 566777888888777754 779999999999999999994 46888999986664
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.75 E-value=3.4e-05 Score=97.11 Aligned_cols=147 Identities=18% Similarity=0.246 Sum_probs=91.9
Q ss_pred CCCcChHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCC----
Q psy2654 1743 KLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPST---- 1818 (1949)
Q Consensus 1743 ~l~~~~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~---- 1818 (1949)
.+...+..+. .+..++..+.+|+|+||||+|||+++++++..+. ....+..++....+..++||.++...
T Consensus 23 ~ivGq~~~i~---~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~---~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~ 96 (500)
T 3nbx_X 23 GLYERSHAIR---LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ---NARAFEYLMTRFSTPEEVFGPLSIQALKDE 96 (500)
T ss_dssp TCSSCHHHHH---HHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS---SCCEEEEECCTTCCHHHHHCCBC-------
T ss_pred hhHHHHHHHH---HHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh---hhhHHHHHHHhcCCHHHhcCcccHHHHhhc
Confidence 4444454443 3455666788999999999999999999997552 11112222222234578999764211
Q ss_pred C---CcccChHHHHHHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCC
Q psy2654 1819 R---EWKDGLFSCLIREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRT 1893 (1949)
Q Consensus 1819 ~---~w~dG~l~~~~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~ 1893 (1949)
+ .+..|.+. ...++++|. ..++.....|-.+|++... +. .|.....|..+ +|+.|..+..
T Consensus 97 g~~~~~~~g~l~------------~~~IL~IDEI~r~~~~~q~~LL~~lee~~v-~i-~G~~~~~~~~~-iI~ATN~lpe 161 (500)
T 3nbx_X 97 GRYERLTSGYLP------------EAEIVFLDEIWKAGPAILNTLLTAINERQF-RN-GAHVEKIPMRL-LVAASNELPE 161 (500)
T ss_dssp ---CBCCTTSGG------------GCSEEEEESGGGCCHHHHHHHHHHHHSSEE-EC-SSSEEECCCCE-EEEEESSCCC
T ss_pred hhHHhhhccCCC------------cceeeeHHhHhhhcHHHHHHHHHHHHHHhc-cC-CCCcCCcchhh-hhhccccCCC
Confidence 0 12223221 236899995 4577778888888887654 33 67777777765 6788876543
Q ss_pred ---CChhhhccceE-EEecCC
Q psy2654 1894 ---ATPATVSRAGI-LYINPQ 1910 (1949)
Q Consensus 1894 ---asPa~vsr~~~-v~~~~~ 1910 (1949)
..||...|+.+ +++++.
T Consensus 162 ~~~~~~aLldRF~~~i~v~~p 182 (500)
T 3nbx_X 162 ADSSLEALYDRMLIRLWLDKV 182 (500)
T ss_dssp TTCTTHHHHTTCCEEEECCSC
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 44699999966 566543
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.72 E-value=4.7e-05 Score=90.04 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=73.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc-CCCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS-TGDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~-~~~~~~ 1842 (1949)
..+++|+||||+|||++++++|+.+ ...+..++ ..++.+.+. +-..+.+..+++.+... ....+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~-----~~~l~~~~~----g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM-----GINPIMMS-----AGELESGNA----GEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEE-----HHHHHCC-------HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEe-----HHHhhhccC----chhHHHHHHHHHHHHHHHhcCCCe
Confidence 4689999999999999999999987 22222232 233433332 11223344444444211 133446
Q ss_pred EEEEcCC--------CCc-------cchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh--ccceEE
Q psy2654 1843 WMVMDGD--------IDP-------MWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV--SRAGIL 1905 (1949)
Q Consensus 1843 Wiv~Dg~--------~d~-------~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v--sr~~~v 1905 (1949)
.|+||.. -++ .+...|..+||+.....+.......-.+++.+|..|.+...+.||.+ .|+-.+
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 7888843 111 35577788888665555554444555678899999999999999998 477765
Q ss_pred EecC
Q psy2654 1906 YINP 1909 (1949)
Q Consensus 1906 ~~~~ 1909 (1949)
+.-|
T Consensus 182 i~~P 185 (293)
T 3t15_A 182 YWAP 185 (293)
T ss_dssp EECC
T ss_pred EeCc
Confidence 4433
No 67
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.71 E-value=5.3e-05 Score=91.43 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=44.3
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCH--hhhh----hhcccccccCccccccccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDY--RSCG----NIYKGLAQTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~--~~l~----~~~~g~~~~g~w~~~de~~~l~~ 1497 (1949)
.+.+++||+|||||++++.+++.+ |.+++.++|.+-.+. ..+. ..+......+..+++||++.++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 356689999999999999999999 999999998753210 0000 11111223356677777777664
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=5.3e-05 Score=91.71 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhcc--CCCCCCCCCCChhHHHHHHHHHhc-----ceEEEEeCCCCCCHhhhhhhcccc------c-cc
Q psy2654 1418 DRCYITLSQSLHLNM--GGAPAGPAGTGKTETTKDLGKAIG-----IMVYVFNCSEQMDYRSCGNIYKGL------A-QT 1483 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~--~~~l~G~~g~GKt~~v~~la~~lg-----~~~~~~n~~~~~~~~~l~~~~~g~------~-~~ 1483 (1949)
+.....+..++..+. +.+++||+|||||++++.+|+.++ .+++.++|++......+...+... . ..
T Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS 110 (327)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCS
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCC
Confidence 344556666666654 366899999999999999999974 347888988754333322222111 1 22
Q ss_pred CccccccccccccchhhHH
Q psy2654 1484 GAWGCFDEFNRISVEVLSV 1502 (1949)
Q Consensus 1484 g~w~~~de~~~l~~~~ls~ 1502 (1949)
+..+++||++.++.+....
T Consensus 111 ~~vliiDe~~~l~~~~~~~ 129 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQA 129 (327)
T ss_dssp CEEEEEETGGGSCHHHHHH
T ss_pred CeEEEEeCCCcCCHHHHHH
Confidence 4456667777776654443
No 69
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.64 E-value=2.2e-05 Score=94.72 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcc--CCCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHhhhhhhccccc-------ccC
Q psy2654 1419 RCYITLSQSLHLNM--GGAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYRSCGNIYKGLA-------QTG 1484 (1949)
Q Consensus 1419 r~~~~l~~al~~~~--~~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~~l~~~~~g~~-------~~g 1484 (1949)
.....+..++..+. +.+++||+|||||++++.+|+.+ +.+++.+||++......+...+...+ ..+
T Consensus 24 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (319)
T 2chq_A 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPF 103 (319)
T ss_dssp HHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCc
Confidence 34444555555444 35688999999999999999997 56788999987544433333322221 224
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchhhHHHHHHHHHhHhh
Q psy2654 1485 AWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLD 1564 (1949)
Q Consensus 1485 ~w~~~de~~~l~~~~ls~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~~l~~~~~~~~~~~~ 1564 (1949)
..+++||++.++.+....+ ..
T Consensus 104 ~vliiDe~~~l~~~~~~~L-----------------------------------------------------------~~ 124 (319)
T 2chq_A 104 KIIFLDEADALTADAQAAL-----------------------------------------------------------RR 124 (319)
T ss_dssp EEEEEETGGGSCHHHHHTT-----------------------------------------------------------GG
T ss_pred eEEEEeCCCcCCHHHHHHH-----------------------------------------------------------HH
Confidence 5667777777765432221 00
Q ss_pred hhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccccccCCHHHHHHHHH
Q psy2654 1565 SVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIML 1628 (1949)
Q Consensus 1565 ~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L 1628 (1949)
.+.. ..+++.++++.|.. ..+++.++++|..+.+..|+...+.+.+-
T Consensus 125 ~le~-------------~~~~~~~i~~~~~~----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 125 TMEM-------------YSKSCRFILSCNYV----SRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp GTSS-------------SSSSEEEEEEESCG----GGSCHHHHTTCEEEECCCCCHHHHHHHHH
T ss_pred HHHh-------------cCCCCeEEEEeCCh----hhcchHHHhhCeEEEecCCCHHHHHHHHH
Confidence 0100 12456677777753 36889999999999999998877665543
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.64 E-value=8.4e-05 Score=92.31 Aligned_cols=153 Identities=11% Similarity=-0.004 Sum_probs=82.6
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHh---------cceEEEEeCCCCCCHhhh-hhhcccccccCccccccccccccchhhH
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAI---------GIMVYVFNCSEQMDYRSC-GNIYKGLAQTGAWGCFDEFNRISVEVLS 1501 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~l---------g~~~~~~n~~~~~~~~~l-~~~~~g~~~~g~w~~~de~~~l~~~~ls 1501 (1949)
.+.+++||+|||||++++.+++.+ +.+++.+||.+..+...+ ..++..+ |...- .....
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l---~~~~~-----~~~~~--- 113 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAV---GVRVP-----FTGLS--- 113 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHH---SCCCC-----SSCCC---
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHh---CCCCC-----CCCCC---
Confidence 346689999999999999999999 889999999987765433 2222222 11000 00000
Q ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhhcccCCCcccccccccchh--hHHHHHHHHHhHhhhhhhccccceeccce
Q psy2654 1502 VVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVE--VLSVVAVQVKSVLDSVKMRKSRFNFMGEN 1579 (1949)
Q Consensus 1502 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~de~n~~~~~--~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1579 (1949)
....+..+...+... .....+++||+..+... ....+...+. ....
T Consensus 114 -~~~~~~~l~~~l~~~----------------~~~~vlilDEi~~l~~~~~~~~~l~~l~~----~~~~----------- 161 (387)
T 2v1u_A 114 -VGEVYERLVKRLSRL----------------RGIYIIVLDEIDFLPKRPGGQDLLYRITR----INQE----------- 161 (387)
T ss_dssp -HHHHHHHHHHHHTTS----------------CSEEEEEEETTTHHHHSTTHHHHHHHHHH----GGGC-----------
T ss_pred -HHHHHHHHHHHHhcc----------------CCeEEEEEccHhhhcccCCCChHHHhHhh----chhh-----------
Confidence 011112222211100 00113456887766543 2222222221 1100
Q ss_pred EEEecCeeEEEEeCCCCCCCCCChhhHhhcc--cccccccCCHHHHHHHHH
Q psy2654 1580 IKLVTTVGMFITMNPGYAGRAELPENLKALF--RPCAMVVPDFALICEIML 1628 (1949)
Q Consensus 1580 i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~f--r~v~~~~pD~~~i~e~~L 1628 (1949)
...+.++.++++.|... ....+.+.++++| +.+.+..++...+.++.-
T Consensus 162 ~~~~~~~~~I~~t~~~~-~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLG-FVENLEPRVKSSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp C-----CEEEEECSCST-TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHH
T ss_pred cCCCceEEEEEEECCCc-hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 00134567777777632 1236788899999 678998888887776664
No 71
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.64 E-value=6.1e-05 Score=94.07 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=53.1
Q ss_pred HHHHHHHhccC--CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhccccc-----ccCccccccccccc
Q psy2654 1423 TLSQSLHLNMG--GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLA-----QTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1423 ~l~~al~~~~~--~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~-----~~g~w~~~de~~~l 1495 (1949)
.+..++..+.. .+++||+|||||++++.+|+.++.+++.++|.. .....+...+.++. ..+..+++||++++
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERARQNRNAGRRTILFVDEVHRF 118 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhh
Confidence 34455555554 679999999999999999999999999999865 34455555554443 23567777888777
Q ss_pred cchh
Q psy2654 1496 SVEV 1499 (1949)
Q Consensus 1496 ~~~~ 1499 (1949)
+.+.
T Consensus 119 ~~~~ 122 (447)
T 3pvs_A 119 NKSQ 122 (447)
T ss_dssp ----
T ss_pred CHHH
Confidence 6643
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.61 E-value=2.8e-05 Score=91.22 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=46.3
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC-------Hhhhhhhccccc-ccCccccccccccc
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD-------YRSCGNIYKGLA-QTGAWGCFDEFNRI 1495 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~-------~~~l~~~~~g~~-~~g~w~~~de~~~l 1495 (1949)
.+.+++||+|||||++++.+|+.+|.+++.++|++..- ...+..++..+. ..+..+++||++.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 45679999999999999999999999999999976321 122333444332 23567777777766
No 73
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.59 E-value=5.9e-05 Score=95.27 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=52.8
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhc--ceEEEEeCCCCCC-----Hhhhhhhcccc----cccCccccccccccccch
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIG--IMVYVFNCSEQMD-----YRSCGNIYKGL----AQTGAWGCFDEFNRISVE 1498 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg--~~~~~~n~~~~~~-----~~~l~~~~~g~----~~~g~w~~~de~~~l~~~ 1498 (1949)
.+.+++||+|||||++++++|+.+| .+++.++|++-.+ ...+.+.|..+ ...++.+.+||++.+...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccc
Confidence 4678999999999999999999999 9999999987543 12245555544 455788999999988654
No 74
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.59 E-value=0.00017 Score=87.65 Aligned_cols=121 Identities=14% Similarity=0.196 Sum_probs=78.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
.+|+|+||||+|||++++.+++.. ...+..++...+. ..|-+..+++. ......+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~---------------~~~~~~~~~~~-----~~~~~vl 110 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM-----SANIKTTAAPMIE---------------KSGDLAAILTN-----LSEGDIL 110 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEEGGGCC---------------SHHHHHHHHHT-----CCTTCEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEecchhcc---------------chhHHHHHHHh-----ccCCCEE
Confidence 589999999999999999998765 1112222221111 12223333332 2234789
Q ss_pred EEcC--CCCccchhhHHhhhcCCcceeccCC----c--eeecCCCceEEEEeCCCCCCChhhhccc-eEEEecCCC
Q psy2654 1845 VMDG--DIDPMWIESLNTVMDDNKVLTLASN----E--RIALTPSMRLLFEISNLRTATPATVSRA-GILYINPQD 1911 (1949)
Q Consensus 1845 v~Dg--~~d~~w~e~ln~~lddn~~l~l~~g----e--~i~~~~~~~~ifE~~~l~~asPa~vsr~-~~v~~~~~~ 1911 (1949)
++|. .+++.+.+.|.++|++.+...+..+ . ++..| ++++|..|.......|+..+|| -.+.+.+-.
T Consensus 111 ~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 111 FIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp EEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred EEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 9994 5678888999999988765333211 2 23344 7899999999999999999999 566776543
No 75
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=3.9e-05 Score=94.10 Aligned_cols=137 Identities=14% Similarity=0.175 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhc--CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHH
Q psy2654 1750 FILKVVQLVELFAV--RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFS 1827 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~--~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~ 1827 (1949)
+..+-.++|..+.. .+||+|+||||||||++++++|..+ ...+.. ++..++++.|...+ .
T Consensus 199 ~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~-----v~~s~l~sk~~Ges--------e 260 (437)
T 4b4t_L 199 LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-----GANFIF-----SPASGIVDKYIGES--------A 260 (437)
T ss_dssp HHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEE-----EEGGGTCCSSSSHH--------H
T ss_pred HHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEE-----EehhhhccccchHH--------H
Confidence 33445567776665 4799999999999999999999877 222222 33445666554322 4
Q ss_pred HHHHHHhhcCCCCCcEEEEcCCCCcc--------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCC
Q psy2654 1828 CLIREQAQSTGDGPKWMVMDGDIDPM--------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRT 1893 (1949)
Q Consensus 1828 ~~~r~~~~~~~~~~~Wiv~Dg~~d~~--------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~ 1893 (1949)
+.+|............|||-..+|+. .--.++.+|. .-+| +.-.+++.+|..|.....
T Consensus 261 ~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~------~lDg--~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT------QMDG--FDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH------HHHS--SSCTTSSEEEEEESSTTS
T ss_pred HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHH------Hhhc--ccCCCCeEEEEecCCchh
Confidence 44444433222223456653333322 1112333331 0001 111245678999999999
Q ss_pred CChhhhccc---eEEEecCCCC
Q psy2654 1894 ATPATVSRA---GILYINPQDL 1912 (1949)
Q Consensus 1894 asPa~vsr~---~~v~~~~~~~ 1912 (1949)
+=||.+.|. -.||++..+.
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCH
T ss_pred hCHHHhCCCccceeeecCCcCH
Confidence 999998653 2577775543
No 76
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00011 Score=88.54 Aligned_cols=136 Identities=17% Similarity=0.267 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcC--cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHH
Q psy2654 1750 FILKVVQLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFS 1827 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~ 1827 (1949)
+..+-.++|..+..+ +||+|+||||||||++++++|..+ ...+. .++..++++.|... -.
T Consensus 166 ~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~-----~v~~s~l~sk~vGe--------se 227 (405)
T 4b4t_J 166 LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-----DCKFI-----RVSGAELVQKYIGE--------GS 227 (405)
T ss_dssp HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEE-----EEEGGGGSCSSTTH--------HH
T ss_pred HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-----CCCce-----EEEhHHhhccccch--------HH
Confidence 445556778877664 799999999999999999999877 22222 23444566655432 25
Q ss_pred HHHHHHhhcCCCCCcEEEE-cCCCCcc--------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC
Q psy2654 1828 CLIREQAQSTGDGPKWMVM-DGDIDPM--------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR 1892 (1949)
Q Consensus 1828 ~~~r~~~~~~~~~~~Wiv~-Dg~~d~~--------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~ 1892 (1949)
+.+|+...........||| |. +|+. .--.++.+|.. -+| +.-..++.+|..|....
T Consensus 228 ~~vr~lF~~Ar~~aP~IIFiDE-iDai~~~R~~~~~~~~~~~~~~l~~lL~~------lDg--~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 228 RMVRELFVMAREHAPSIIFMDE-IDSIGSTRVEGSGGGDSEVQRTMLELLNQ------LDG--FETSKNIKIIMATNRLD 298 (405)
T ss_dssp HHHHHHHHHHHHTCSEEEEEES-SSCCTTSCSCSSSGGGGHHHHHHHHHHHH------HHT--TTCCCCEEEEEEESCSS
T ss_pred HHHHHHHHHHHHhCCceEeeec-chhhccCCCCCCCCCcHHHHHHHHHHHHh------hhc--cCCCCCeEEEeccCChh
Confidence 5555544333333345555 52 2211 11123444310 000 11234577899999999
Q ss_pred CCChhhhc--cc-eEEEecCCCC
Q psy2654 1893 TATPATVS--RA-GILYINPQDL 1912 (1949)
Q Consensus 1893 ~asPa~vs--r~-~~v~~~~~~~ 1912 (1949)
.+-||.+- |+ -.||++..+.
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCH
T ss_pred hCCHhHcCCCcCceEEEcCCcCH
Confidence 99999985 66 3788876553
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.56 E-value=4.6e-05 Score=98.82 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=86.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccC----CCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINP----STREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~----~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
+|+|+||||+|||++++++++...+. .+. .....+...+.|.... ....+..|.+..+ + .
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~----~~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A--~--------~ 392 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRA----VYT--TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA--D--------G 392 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCE----ECC--CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH--S--------S
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCc----eec--CCCccccccccceeeeccccccccccCCeeEec--C--------C
Confidence 79999999999999999998755221 111 1111222334443321 1223567877643 1 1
Q ss_pred cEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC-------------CCChhhhccceEEE
Q psy2654 1842 KWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR-------------TATPATVSRAGILY 1906 (1949)
Q Consensus 1842 ~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~-------------~asPa~vsr~~~v~ 1906 (1949)
..+++|. .+++.....|..+|++...-....|....+|.++++|..+.... ..+||.++|+.+++
T Consensus 393 gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~ 472 (595)
T 3f9v_A 393 GIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIF 472 (595)
T ss_dssp SEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred CcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEE
Confidence 5688894 46778889999999887764456788999999999998887665 89999999996554
Q ss_pred e
Q psy2654 1907 I 1907 (1949)
Q Consensus 1907 ~ 1907 (1949)
+
T Consensus 473 ~ 473 (595)
T 3f9v_A 473 I 473 (595)
T ss_dssp E
T ss_pred E
Confidence 3
No 78
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.54 E-value=0.00012 Score=82.83 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=73.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc---CCCCCc
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS---TGDGPK 1842 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~---~~~~~~ 1842 (1949)
+++|+||||+|||++++.+++.+........+..++... ..| ...+...+...... ......
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 104 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-----ERG----------IDVVRHKIKEFARTAPIGGAPFK 104 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC-----TTC----------HHHHHHHHHHHHTSCCSTTCSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc-----ccC----------hHHHHHHHHHHhcccCCCccCce
Confidence 599999999999999999998763321111122122111 000 01222333333222 123457
Q ss_pred EEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1843 WMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1843 Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
.|++|.. +++...+.|..+++.. ++++++|+.+.......|+..+||..+.+.+-.
T Consensus 105 vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 105 IIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred EEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 8999953 4555566777777542 456788998888888999999999988887644
No 79
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.53 E-value=0.00014 Score=91.18 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=43.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh-----cceEEEEeCCCCCCHhhhhhh--------cccccc-cCccccccccccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDYRSCGNI--------YKGLAQ-TGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l-----g~~~~~~n~~~~~~~~~l~~~--------~~g~~~-~g~w~~~de~~~l~~ 1497 (1949)
+.+++||+|+|||++++.+|+.+ |.+++.++|.+-.. .+... +..... ....+++||++.+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN--DLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH--HHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH--HHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 46689999999999999999999 88899999876311 11111 111122 456667777776654
No 80
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.52 E-value=0.00038 Score=79.97 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=75.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCccccc---CCCcc---CcccccccccCCCCCcccChHHHHHHHHhhc-
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDL---EPKAV---TNDELFGIINPSTREWKDGLFSCLIREQAQS- 1836 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i---~p~~~---~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~- 1836 (1949)
.++++|+||||+|||++++.+++.+............ +...+ ...++++. ++..... .+.+..+++.....
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI-DAASRTK-VEDTRDLLDNVQYAP 122 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE-ETTCGGG-HHHHHHHHHSCCCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe-cCccccc-HHHHHHHHHHhhhch
Confidence 3589999999999999999999877432110000000 00000 00122221 1111011 11122233222111
Q ss_pred CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1837 TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1837 ~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
.......||+|.. +++...+.|-..+++ .++++++|+-+.+...+.|+..+||..+.+.+-.
T Consensus 123 ~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-------------~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~ 186 (250)
T 1njg_A 123 ARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 186 (250)
T ss_dssp SSSSSEEEEEETGGGSCHHHHHHHHHHHHS-------------CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred hcCCceEEEEECcccccHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCCHHHHHHhhhccCCCCC
Confidence 1223478999964 566666667666654 2567889999988888999999999999988643
No 81
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.51 E-value=8.9e-05 Score=91.37 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=42.7
Q ss_pred ccccccchHHHHHHHHHHHhcc----CCCCCCCCCCChhHHHHHHHHHhcc--eEEEEeCCC
Q psy2654 1411 LVITPLTDRCYITLSQSLHLNM----GGAPAGPAGTGKTETTKDLGKAIGI--MVYVFNCSE 1466 (1949)
Q Consensus 1411 ~v~t~~t~r~~~~l~~al~~~~----~~~l~G~~g~GKt~~v~~la~~lg~--~~~~~n~~~ 1466 (1949)
+|-.+...+.+..+..++..+. +.+++||+|||||++++.+|+.++. +++.++|..
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4444445555666667776654 3679999999999999999999996 788888765
No 82
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.51 E-value=0.00027 Score=85.25 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=78.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC-cccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT-NDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~-~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
.++|+|+||||+|||++++.+++.+. ..+..++...+. ..+++| .++. ......
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~~~~~~l~~----------------~l~~----~~~~~~ 92 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAIEKPGDLAA----------------ILAN----SLEEGD 92 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTCCSHHHHHH----------------HHTT----TCCTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccccCChHHHHH----------------HHHH----hccCCC
Confidence 47899999999999999999998762 122223322221 112222 1111 122347
Q ss_pred EEEEcC--CCCccchhhHHhhhcCCcceeccCCc----eee-cCCCceEEEEeCCCCCCChhhhccce-EEEecCCC
Q psy2654 1843 WMVMDG--DIDPMWIESLNTVMDDNKVLTLASNE----RIA-LTPSMRLLFEISNLRTATPATVSRAG-ILYINPQD 1911 (1949)
Q Consensus 1843 Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge----~i~-~~~~~~~ifE~~~l~~asPa~vsr~~-~v~~~~~~ 1911 (1949)
.|++|. .+++...+.|..++++.....+.... .+. .+++++++..+.......|+..+||+ .+.+.+-.
T Consensus 93 ~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 93 ILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp EEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred EEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 899995 35666778888888776543322211 122 33578999999999999999999995 77777543
No 83
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.48 E-value=0.0001 Score=92.06 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=51.2
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH------hhhhhhccccc-ccCccccccccccccchh
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY------RSCGNIYKGLA-QTGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~------~~l~~~~~g~~-~~g~w~~~de~~~l~~~~ 1499 (1949)
..|++++||+|||||++++.+|..+|.|++.++|++-.+. +.+..+|..+. ...+.+++||++.++...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r 124 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhc
Confidence 4567899999999999999999999999999999875431 22233343332 245788889988886653
No 84
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.47 E-value=0.00024 Score=85.08 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=75.6
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHh--hcCCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQA--QSTGDG 1840 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~--~~~~~~ 1840 (1949)
..++++|+||||+|||++++.+++.+. ..+..++...+....+.|. .. .+.+..+..... -.....
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~ 116 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGYVGK---EV----DSIIRDLTDSAGGAIDAVEQ 116 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSCCSGGG---ST----THHHHHHHHTTTTCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccCCccCc---cH----HHHHHHHHHHhhHHHhhccC
Confidence 357899999999999999999998772 2233344333322223331 11 112222221100 000001
Q ss_pred CcEEEEcCC--CCcc------------chhhHHhhhcCCcceeccCCceeecCCCceEEEE----eCCCCCCChhhhccc
Q psy2654 1841 PKWMVMDGD--IDPM------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFE----ISNLRTATPATVSRA 1902 (1949)
Q Consensus 1841 ~~Wiv~Dg~--~d~~------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE----~~~l~~asPa~vsr~ 1902 (1949)
...|++|.. +.+. +...|..+|++... ...+| ...++++.+|.- +.+.....|+..+||
T Consensus 117 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~-~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~ 193 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV-STKHG--MVKTDHILFIASGAFQVARPSDLIPELQGRL 193 (310)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE-EETTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTC
T ss_pred CCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeE-ecccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhC
Confidence 267899942 1211 25566677776543 33344 334567777776 456778999999999
Q ss_pred eE-EEecCCC
Q psy2654 1903 GI-LYINPQD 1911 (1949)
Q Consensus 1903 ~~-v~~~~~~ 1911 (1949)
.+ |++.+-.
T Consensus 194 ~~~i~~~~~~ 203 (310)
T 1ofh_A 194 PIRVELTALS 203 (310)
T ss_dssp CEEEECCCCC
T ss_pred CceEEcCCcC
Confidence 75 7777644
No 85
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.47 E-value=8.2e-05 Score=89.15 Aligned_cols=131 Identities=16% Similarity=0.059 Sum_probs=76.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccC--CCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKK--KPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~--~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
++|+|+||||+|||++++.+++.+..... ...+..+++. ++.+.+...+ .+-+..+++.. ...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-----~l~~~~~g~~----~~~~~~~~~~~------~~~ 132 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD-----DLVGQYIGHT----APKTKEVLKRA------MGG 132 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-----GTCCSSTTCH----HHHHHHHHHHH------TTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-----Hhhhhccccc----HHHHHHHHHhc------CCC
Confidence 47999999999999999999998854322 1123334433 3333332111 11223333333 125
Q ss_pred EEEEcCC-----------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC-----CCCChhhhccc-eEE
Q psy2654 1843 WMVMDGD-----------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL-----RTATPATVSRA-GIL 1905 (1949)
Q Consensus 1843 Wiv~Dg~-----------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l-----~~asPa~vsr~-~~v 1905 (1949)
.|++|.. .+...+..|..+|++. +.++.+|+.+..- ....|+..+|| -.|
T Consensus 133 vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i 199 (309)
T 3syl_A 133 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADRMENFFQSNPGFRSRIAHHI 199 (309)
T ss_dssp EEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEE
T ss_pred EEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEE
Confidence 8888942 2555667777777653 2566677766421 12459999999 677
Q ss_pred EecCCCC-CchhhHHhhhc
Q psy2654 1906 YINPQDL-GWNPYVLSWTD 1923 (1949)
Q Consensus 1906 ~~~~~~~-~w~~~~~~w~~ 1923 (1949)
++.+-+. ....++...+.
T Consensus 200 ~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 200 EFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECCCCHHHHHHHHHHHHH
T ss_pred EcCCcCHHHHHHHHHHHHH
Confidence 7876552 23444444444
No 86
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=5.9e-05 Score=92.38 Aligned_cols=130 Identities=15% Similarity=0.238 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhc--CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHH
Q psy2654 1752 LKVVQLVELFAV--RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCL 1829 (1949)
Q Consensus 1752 ~k~~~l~~~l~~--~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~ 1829 (1949)
.+-.++|..+.. .+||+|+||||||||++++++|..+ +..+.. ++..++++.|... -.+.
T Consensus 192 l~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~-----v~~~~l~~~~~Ge--------~e~~ 253 (428)
T 4b4t_K 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIR-----VNGSEFVHKYLGE--------GPRM 253 (428)
T ss_dssp HHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEE-----EEGGGTCCSSCSH--------HHHH
T ss_pred HhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEE-----Eecchhhccccch--------hHHH
Confidence 344566776654 4799999999999999999999887 222222 3344566655322 2444
Q ss_pred HHHHhhcCCCCCcEEEEcCCCCcc--------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCC
Q psy2654 1830 IREQAQSTGDGPKWMVMDGDIDPM--------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTAT 1895 (1949)
Q Consensus 1830 ~r~~~~~~~~~~~Wiv~Dg~~d~~--------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~as 1895 (1949)
+|+...........|+|-..+|+. .--.++.+|. . =+.+.-.+++.+|..|.....+-
T Consensus 254 ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~------~--ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 254 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT------Q--MDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH------H--HHHSCSSCSEEEEEEESCSSSCC
T ss_pred HHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH------H--hhCCCCCCCEEEEEecCChhhcC
Confidence 444433222222445553222211 1112333331 0 01111234567889999999999
Q ss_pred hhhhc--cce-EEEe
Q psy2654 1896 PATVS--RAG-ILYI 1907 (1949)
Q Consensus 1896 Pa~vs--r~~-~v~~ 1907 (1949)
||.+- |+- .|++
T Consensus 326 ~AllRpGRfd~~I~~ 340 (428)
T 4b4t_K 326 PALLRPGRLDRKIEF 340 (428)
T ss_dssp HHHHSSSSEEEEEEC
T ss_pred hhhhcCCcceEEEEc
Confidence 99985 665 5777
No 87
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00015 Score=88.27 Aligned_cols=136 Identities=14% Similarity=0.202 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhc--CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHH
Q psy2654 1750 FILKVVQLVELFAV--RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFS 1827 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~--~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~ 1827 (1949)
+..+-.++|..+.. .+||+|+||||||||++++++|..+ ...+. .++..++++.|... -.
T Consensus 227 ~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-----~~~fi-----~vs~s~L~sk~vGe--------se 288 (467)
T 4b4t_H 227 LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-----DATFI-----RVIGSELVQKYVGE--------GA 288 (467)
T ss_dssp HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH-----TCEEE-----EEEGGGGCCCSSSH--------HH
T ss_pred HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CCCeE-----EEEhHHhhcccCCH--------HH
Confidence 33444567777664 5799999999999999999999877 22222 23445666655332 24
Q ss_pred HHHHHHhhcCCCCCcEEEEcCCCCccc--------------hhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCC
Q psy2654 1828 CLIREQAQSTGDGPKWMVMDGDIDPMW--------------IESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRT 1893 (1949)
Q Consensus 1828 ~~~r~~~~~~~~~~~Wiv~Dg~~d~~w--------------~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~ 1893 (1949)
+.+|............|||...+|+.. .-.++.+|+. =+.+.-.+++-+|..|.....
T Consensus 289 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~--------lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQ--------LDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHH--------HHSSCCTTTEEEEEECSCTTS
T ss_pred HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHH--------hhccCCCCcEEEEeCCCCccc
Confidence 555554433333334566654443321 1122333310 011122345678888999999
Q ss_pred CChhhhc--cce-EEEecCCC
Q psy2654 1894 ATPATVS--RAG-ILYINPQD 1911 (1949)
Q Consensus 1894 asPa~vs--r~~-~v~~~~~~ 1911 (1949)
+-||.+- |+- .|+++..+
T Consensus 361 LDpALlRpGRFD~~I~i~lPd 381 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPD 381 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCC
T ss_pred CChhhhccccccEEEEeCCcC
Confidence 9999864 663 56676544
No 88
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.44 E-value=0.00029 Score=90.62 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=74.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCc-cCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKA-VTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~-~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
...++|+|||||||||+.++++..+. ..+..++-.. .+..+++|.... .-+...|-+...+..+ .....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~~~~~~~g~~~~-~ig~~~~~~~~~~~~a----~~~~~ 177 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVRDESEIRGHRRT-YVGAMPGRIIQGMKKA----GKLNP 177 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC---------------------CHHHHHHTT----CSSSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccchhhhhhhHHHH-HhccCchHHHHHHHHh----hccCC
Confidence 45799999999999999999999872 2233343333 223455554321 1112233333333332 22334
Q ss_pred EEEEcC--CCCcc----chhhHHhhhcCCcce-eccCCceeecC-CCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1843 WMVMDG--DIDPM----WIESLNTVMDDNKVL-TLASNERIALT-PSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1843 Wiv~Dg--~~d~~----w~e~ln~~lddn~~l-~l~~ge~i~~~-~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
-+++|. .+.+. -...|-.+||+...- ....+.....+ +++++|..+..+..+.|+..+||-+|++++-.
T Consensus 178 vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 178 VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 677784 22222 336667777754421 12223333333 67889999999999999999999999887654
No 89
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=5.6e-05 Score=91.09 Aligned_cols=145 Identities=17% Similarity=0.256 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcC--cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHH
Q psy2654 1753 KVVQLVELFAVR--HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLI 1830 (1949)
Q Consensus 1753 k~~~l~~~l~~~--~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~ 1830 (1949)
+-.++|..+..+ +||+|+||||||||++++++|..+ ...+.. ++..++++.|... -.+.+
T Consensus 203 ~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~-----v~~s~l~sk~vGe--------sek~i 264 (437)
T 4b4t_I 203 THPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-----SATFLR-----IVGSELIQKYLGD--------GPRLC 264 (437)
T ss_dssp HCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEEE-----EESGGGCCSSSSH--------HHHHH
T ss_pred hCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-----CCCEEE-----EEHHHhhhccCch--------HHHHH
Confidence 334567766654 799999999999999999999877 222222 3445666655432 24555
Q ss_pred HHHhhcCCCCCcEEEE-cCCCCc--------------cchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCC
Q psy2654 1831 REQAQSTGDGPKWMVM-DGDIDP--------------MWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTAT 1895 (1949)
Q Consensus 1831 r~~~~~~~~~~~Wiv~-Dg~~d~--------------~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~as 1895 (1949)
|............||| | .+|+ ...-.++.+|+. -+.+.-.+++.+|..|.....+=
T Consensus 265 r~lF~~Ar~~aP~IIfiD-EiDai~~~R~~~~~~~~~~~~~~l~~LL~~--------lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFID-EIDAIGTKRYDSNSGGEREIQRTMLELLNQ--------LDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHHHHHHHHTCSEEEEEE-EESSSSCCCSCSSCSSCCHHHHHHHHHHHH--------HHHCCCSSSEEEEEEESCSTTCC
T ss_pred HHHHHHHHhcCCcEEEEe-hhhhhcccCCCCCCCccHHHHHHHHHHHHH--------hhCcCCCCCEEEEEeCCChhhcC
Confidence 5544332222244554 5 2221 112223344321 01112234577899999999999
Q ss_pred hhhhc--cce-EEEecCCCCC-chhhHHhhhcc
Q psy2654 1896 PATVS--RAG-ILYINPQDLG-WNPYVLSWTDT 1924 (1949)
Q Consensus 1896 Pa~vs--r~~-~v~~~~~~~~-w~~~~~~w~~~ 1924 (1949)
||.+- |+- .||++..+.. =..+++.++..
T Consensus 336 pALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 336 PALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp TTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred HHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 99985 765 4677765532 22334444433
No 90
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.00054 Score=83.12 Aligned_cols=82 Identities=24% Similarity=0.189 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHhccC--CCCCCCCCCChhHHHHHHHHHhcc-----eEEEEeCCCCCCHhhhhhhcccccc-------c
Q psy2654 1418 DRCYITLSQSLHLNMG--GAPAGPAGTGKTETTKDLGKAIGI-----MVYVFNCSEQMDYRSCGNIYKGLAQ-------T 1483 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~--~~l~G~~g~GKt~~v~~la~~lg~-----~~~~~n~~~~~~~~~l~~~~~g~~~-------~ 1483 (1949)
+.....+..++..+.. .+++||+|||||++++.+|+.+.. .+..+|+++......+.+.+....+ .
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~ 110 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG 110 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCS
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCC
Confidence 4456677778887765 568899999999999999999742 4666777664444333332222211 1
Q ss_pred Cccccccccccccchh
Q psy2654 1484 GAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1484 g~w~~~de~~~l~~~~ 1499 (1949)
...+++||++.++.+.
T Consensus 111 ~~viiiDe~~~l~~~~ 126 (340)
T 1sxj_C 111 FKLIILDEADAMTNAA 126 (340)
T ss_dssp CEEEEETTGGGSCHHH
T ss_pred ceEEEEeCCCCCCHHH
Confidence 3445667777666543
No 91
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.37 E-value=0.00021 Score=78.59 Aligned_cols=123 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC-----CCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-----KPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTG 1838 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~-----~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~ 1838 (1949)
..+++|+||||+|||++++.+++.+..... ...+..++. .++.... ...+++ ...+..+++.... .
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~ 113 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM-----GALVAGA-KYRGEF-EERLKGVLNDLAK--Q 113 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH-----HHHHTTT-CSHHHH-HHHHHHHHHHHHH--S
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH-----HHHhccC-CccccH-HHHHHHHHHHHhh--c
Confidence 468999999999999999999988743210 111111111 1111100 000000 0112223332221 2
Q ss_pred CCCcEEEEcCC--C--------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC-----CCChhhhccce
Q psy2654 1839 DGPKWMVMDGD--I--------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR-----TATPATVSRAG 1903 (1949)
Q Consensus 1839 ~~~~Wiv~Dg~--~--------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~-----~asPa~vsr~~ 1903 (1949)
.....|++|.. + +..+.+.++.+++. .++.+|+.+.+.. ...|+..+||.
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~ 178 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------------GELHCVGATTLDEYRQYIEKDAALERRFQ 178 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT---------------TSCCEEEEECHHHHHHHTTTCHHHHTTEE
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc---------------CCeEEEEeCCHHHHHHHHhcCHHHHHHhc
Confidence 23357899952 1 23445666666643 2456788777655 67899999999
Q ss_pred EEEecCC
Q psy2654 1904 ILYINPQ 1910 (1949)
Q Consensus 1904 ~v~~~~~ 1910 (1949)
.+++.+-
T Consensus 179 ~i~~~~p 185 (195)
T 1jbk_A 179 KVFVAEP 185 (195)
T ss_dssp EEECCCC
T ss_pred eeecCCC
Confidence 8888754
No 92
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=6.4e-05 Score=92.08 Aligned_cols=131 Identities=10% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHHHHhc--CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1755 VQLVELFAV--RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1755 ~~l~~~l~~--~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
.++|..+.. .+||+|+||||||||++++++|..+ +..+.. ++..++++.|... -.+.+|.
T Consensus 204 pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~-----v~~s~l~~~~vGe--------se~~ir~ 265 (434)
T 4b4t_M 204 ADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATFLK-----LAAPQLVQMYIGE--------GAKLVRD 265 (434)
T ss_dssp SHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEE-----EEGGGGCSSCSSH--------HHHHHHH
T ss_pred HHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEE-----Eehhhhhhcccch--------HHHHHHH
Confidence 356666555 4799999999999999999999877 222222 3344566555322 2445554
Q ss_pred HhhcCCCCCcEEEEcCCCCcc--------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhh
Q psy2654 1833 QAQSTGDGPKWMVMDGDIDPM--------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPAT 1898 (1949)
Q Consensus 1833 ~~~~~~~~~~Wiv~Dg~~d~~--------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~ 1898 (1949)
...........|||-..+|+. .--.++.+|+. -+| +.-.+++-+|..|.....+=||.
T Consensus 266 lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~------ldg--~~~~~~ViVIaaTNrp~~LD~Al 337 (434)
T 4b4t_M 266 AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ------LDG--FSSDDRVKVLAATNRVDVLDPAL 337 (434)
T ss_dssp HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH------HTT--SCSSCSSEEEEECSSCCCCCTTT
T ss_pred HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH------hhc--cCCCCCEEEEEeCCCchhcCHhH
Confidence 433222222456654333321 11122333310 001 11124566788888899999999
Q ss_pred hc--cce-EEEecCCC
Q psy2654 1899 VS--RAG-ILYINPQD 1911 (1949)
Q Consensus 1899 vs--r~~-~v~~~~~~ 1911 (1949)
+. |+- .|+++..+
T Consensus 338 lRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 338 LRSGRLDRKIEFPLPS 353 (434)
T ss_dssp CSTTSEEEEEECCCCC
T ss_pred hcCCceeEEEEeCCcC
Confidence 77 664 57777554
No 93
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.35 E-value=0.00012 Score=85.48 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=85.2
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCC---CCCcccChHHHH
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPS---TREWKDGLFSCL 1829 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~---~~~w~dG~l~~~ 1829 (1949)
+..+.....+|+|+||||+|||++.+.++...... ...+..+|..+++ ..++||..... ......|.+..+
T Consensus 22 ~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a 99 (265)
T 2bjv_A 22 VSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA 99 (265)
T ss_dssp HHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc
Confidence 33445567899999999999999999999765322 1223444444433 24567753210 012345555431
Q ss_pred HHHHhhcCCCCCcEEEEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC-------CCCChhhhc
Q psy2654 1830 IREQAQSTGDGPKWMVMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL-------RTATPATVS 1900 (1949)
Q Consensus 1830 ~r~~~~~~~~~~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l-------~~asPa~vs 1900 (1949)
....+++|. .+++...+.|..+|++... -..|.....+.++++|+.++.- ....|+..+
T Consensus 100 ----------~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~ 167 (265)
T 2bjv_A 100 ----------DGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (265)
T ss_dssp ----------TTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred ----------CCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH
Confidence 125799994 4567777888888887653 2345555667789999988752 246799999
Q ss_pred cceEEEec
Q psy2654 1901 RAGILYIN 1908 (1949)
Q Consensus 1901 r~~~v~~~ 1908 (1949)
|+..+.+.
T Consensus 168 Rl~~~~i~ 175 (265)
T 2bjv_A 168 ALAFDVVQ 175 (265)
T ss_dssp HHCSEEEE
T ss_pred hhcCcEEe
Confidence 99654444
No 94
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.34 E-value=0.00073 Score=85.34 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=79.7
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC-----CCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-----KPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS 1836 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~-----~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~ 1836 (1949)
....+++|+||||+|||++++.++..+..... ...+..++.. +.|. ++|. .-+..++.....
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------~~~~---g~~e-~~~~~~~~~~~~- 265 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------TKYR---GEFE-DRLKKVMDEIRQ- 265 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------C-TTHHHHHHHHHT-
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------cccc---chHH-HHHHHHHHHHHh-
Confidence 34568999999999999999999998754221 1111112211 2221 2222 223445554432
Q ss_pred CCCCCcEEEEcCCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC-----CCChhhhccceEEEecCCC
Q psy2654 1837 TGDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR-----TATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1837 ~~~~~~Wiv~Dg~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~-----~asPa~vsr~~~v~~~~~~ 1911 (1949)
....-+++||..+.. ..|..+|+. | .+++|..|+.-. ...|+..+||..|++++..
T Consensus 266 --~~~~iLfiD~~~~a~--~~L~~~L~~--------g-------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~ 326 (468)
T 3pxg_A 266 --AGNIILFIDAAIDAS--NILKPSLAR--------G-------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (468)
T ss_dssp --CCCCEEEECC----------CCCTTS--------S-------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred --cCCeEEEEeCchhHH--HHHHHhhcC--------C-------CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCC
Confidence 223567789655532 334444432 2 577888887665 4789999999999998764
Q ss_pred CC-chhhHHhhhccC-------CChhHHHHHHHHHHhhcc
Q psy2654 1912 LG-WNPYVLSWTDTR-------ESESEKNILMGLFDKLTP 1943 (1949)
Q Consensus 1912 ~~-w~~~~~~w~~~~-------~~~~~~~~l~~l~~~~~~ 1943 (1949)
.. ...++...+... -+++....+..+.+.|++
T Consensus 327 ~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 327 VDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp HHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 32 223333333221 133345556666666654
No 95
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00022 Score=88.37 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh-----------cceEEEEeCCCCC
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI-----------GIMVYVFNCSEQM 1468 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l-----------g~~~~~~n~~~~~ 1468 (1949)
+.+++||+|||||++++.+++.+ |.+++.+||.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC
Confidence 36689999999999999999998 9999999998754
No 96
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.0001 Score=87.08 Aligned_cols=125 Identities=14% Similarity=0.203 Sum_probs=73.1
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
....+++|+||||+|||++++++|+.+ ...+..++ ..++++.+... ..+.+..++..+.. ...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~-----~~~~~~v~-----~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~ 111 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET-----NATFIRVV-----GSELVKKFIGE----GASLVKDIFKLAKE---KAP 111 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT-----TCEEEEEE-----GGGGCCCSTTH----HHHHHHHHHHHHHH---TCS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEe-----hHHHHHhccch----HHHHHHHHHHHHHH---cCC
Confidence 345799999999999999999999865 12222222 23444443211 11223333333322 123
Q ss_pred cEEEEcCC-------------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cce-EE
Q psy2654 1842 KWMVMDGD-------------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RAG-IL 1905 (1949)
Q Consensus 1842 ~Wiv~Dg~-------------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~~-~v 1905 (1949)
..|++|.. .+....+.++.+++. .+.+..++++.+|..+.....+.|+..+ |+. .+
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~--------~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i 183 (285)
T 3h4m_A 112 SIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE--------MDGFDARGDVKIIGATNRPDILDPAILRPGRFDRII 183 (285)
T ss_dssp EEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH--------HHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEE
T ss_pred eEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH--------hhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEE
Confidence 57888952 133344555555532 1111234568889999989999999998 886 45
Q ss_pred EecCCC
Q psy2654 1906 YINPQD 1911 (1949)
Q Consensus 1906 ~~~~~~ 1911 (1949)
++.+.+
T Consensus 184 ~~~~p~ 189 (285)
T 3h4m_A 184 EVPAPD 189 (285)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 565443
No 97
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.33 E-value=0.00074 Score=81.47 Aligned_cols=143 Identities=11% Similarity=0.224 Sum_probs=79.3
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCC---Ccc-----cccCCCccCcccccccccCC--CCCcccChHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK---PMY-----NDLEPKAVTNDELFGIINPS--TREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~---~~~-----~~i~p~~~~~~el~G~~~~~--~~~w~dG~l~~~~r~ 1832 (1949)
..|+++++||+|+|||++++.+|+.+...... ++- ..+.. -+..+++ .+++. +.+-.-..+-.++..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~--~~~~d~~-~~~~~~~~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQA--GTHPDYY-TLAPEKGKNTLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHH--TCCTTEE-EECCCTTCSSBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc--CCCCCEE-EEeccccCCCCCHHHHHHHHHH
Confidence 35789999999999999999999987422110 000 00000 0001111 12221 011110112223333
Q ss_pred HhhcC-CCCCcEEEEcCCCCccchhhHHhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEec
Q psy2654 1833 QAQST-GDGPKWMVMDGDIDPMWIESLNTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYIN 1908 (1949)
Q Consensus 1833 ~~~~~-~~~~~Wiv~Dg~~d~~w~e~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~ 1908 (1949)
....+ ....+-+|+|.. |..--+..|.+| ++ .|+++.+|+-+.+...+-|+..|||..+.+.
T Consensus 100 ~~~~~~~~~~kvviIdea-d~l~~~a~naLLk~lEe-------------p~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDA-ALLTDAAANALLKTLEE-------------PPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp TTSCCTTSSCEEEEESCG-GGBCHHHHHHHHHHHTS-------------CCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HhhccccCCcEEEEECch-hhcCHHHHHHHHHHhcC-------------CCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 22222 234688888863 222123444443 32 2567889999999999999999999999997
Q ss_pred CCCCCchhhHHhhhccC
Q psy2654 1909 PQDLGWNPYVLSWTDTR 1925 (1949)
Q Consensus 1909 ~~~~~w~~~~~~w~~~~ 1925 (1949)
+-. ..-+..|+..+
T Consensus 166 ~~~---~~~~~~~L~~~ 179 (334)
T 1a5t_A 166 PPP---EQYAVTWLSRE 179 (334)
T ss_dssp CCC---HHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHh
Confidence 643 34566677654
No 98
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.31 E-value=0.0002 Score=78.38 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=66.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC-----CCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-----KPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTG 1838 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~-----~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~ 1838 (1949)
..+|+|+||||+|||++++.+++.+..... ...+..++ ...+.... ...+.| ...+..++......
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-- 113 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD-----LSSLIAGA-KYRGDF-EERLKSILKEVQDA-- 113 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC-----HHHHHHHC-CSHHHH-HHHHHHHHHHHHHT--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe-----HHHhhcCC-CchhHH-HHHHHHHHHHHHhc--
Confidence 568999999999999999999988743211 01111111 11111100 000001 11223333333221
Q ss_pred CCCcEEEEcCC--CC---------ccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC-----CCChhhhccc
Q psy2654 1839 DGPKWMVMDGD--ID---------PMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR-----TATPATVSRA 1902 (1949)
Q Consensus 1839 ~~~~Wiv~Dg~--~d---------~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~-----~asPa~vsr~ 1902 (1949)
.....|++|.. +. ....+.|..++++ .++.+|+.+.... ...|+..+||
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ii~~~~~~~~~~~~~~~~~l~~R~ 178 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR---------------GELRCIGATTVSEYRQFIEKDKALERRF 178 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------TCSCEEEEECHHHHHHHTTTCHHHHHHE
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------------CCeeEEEecCHHHHHHHHhccHHHHHhc
Confidence 23358888942 11 3444555555543 3455777766543 5789999999
Q ss_pred eEEEecC
Q psy2654 1903 GILYINP 1909 (1949)
Q Consensus 1903 ~~v~~~~ 1909 (1949)
..|++.+
T Consensus 179 ~~i~i~~ 185 (187)
T 2p65_A 179 QQILVEQ 185 (187)
T ss_dssp EEEECCS
T ss_pred CcccCCC
Confidence 9988875
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.30 E-value=0.00068 Score=83.34 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=61.7
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhc---ceEEEEeCCCCCCHhhhhh--------hccccc-
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGN--------IYKGLA- 1481 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg---~~~~~~n~~~~~~~~~l~~--------~~~g~~- 1481 (1949)
+|.+.+++..+...-....++++.|++||||+.+++.+....+ .|++.+||+.-.+ ..+.. .|.|+.
T Consensus 143 s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~elfg~~~g~~tga~~ 221 (387)
T 1ny5_A 143 SPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAELFGYEKGAFTGAVS 221 (387)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHHHHCBCTTSSTTCCS
T ss_pred cHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHHhcCCCCCCCCCccc
Confidence 3566777777777666778888999999999999999988876 6999999997432 22222 222321
Q ss_pred --------ccCccccccccccccchhhHHH
Q psy2654 1482 --------QTGAWGCFDEFNRISVEVLSVV 1503 (1949)
Q Consensus 1482 --------~~g~w~~~de~~~l~~~~ls~~ 1503 (1949)
..|..+.+||++.++.++...+
T Consensus 222 ~~~g~~~~a~~gtlfldei~~l~~~~q~~L 251 (387)
T 1ny5_A 222 SKEGFFELADGGTLFLDEIGELSLEAQAKL 251 (387)
T ss_dssp CBCCHHHHTTTSEEEEESGGGCCHHHHHHH
T ss_pred ccCCceeeCCCcEEEEcChhhCCHHHHHHH
Confidence 2245666777777776666554
No 100
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.29 E-value=0.00027 Score=85.04 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=72.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC---CCCCc
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST---GDGPK 1842 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~---~~~~~ 1842 (1949)
+++|+||||+|||++++.+++.+........+..+|+... .| . +.+...+....... ....+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-----~~-~---------~~~~~~~~~~~~~~~~~~~~~~ 104 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE-----RG-I---------DVVRHKIKEFARTAPIGGAPFK 104 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST-----TC-T---------TTSSHHHHHHHHSCCSSSCCCE
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc-----cC-h---------HHHHHHHHHHHhcCCCCCCCce
Confidence 4999999999999999999988632111111222232211 11 0 01112223322111 23458
Q ss_pred EEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1843 WMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1843 Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
.|++|.. +++.-.+.|..+++. .|+++++|+.+.+.....|+..|||..+.+.+-.
T Consensus 105 vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~ 162 (319)
T 2chq_A 105 IIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (319)
T ss_dssp EEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCC
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChhhcchHHHhhCeEEEecCCC
Confidence 8999963 344334455555543 3567889999999999999999999999988654
No 101
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.29 E-value=0.00035 Score=82.89 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=87.6
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCCC-C--CcccChHHHHHHH
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPST-R--EWKDGLFSCLIRE 1832 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~~-~--~w~dG~l~~~~r~ 1832 (1949)
......+|+|+||||+|||++.+.++....+. ...+..+|..+++ ..+|||.-.... + .-..|.+..+
T Consensus 21 ~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a--- 95 (304)
T 1ojl_A 21 VAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA--- 95 (304)
T ss_dssp HCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHH---
T ss_pred HhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhc---
Confidence 34567899999999999999999998865332 2233445544443 357888642111 0 1234555432
Q ss_pred HhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC-------CCCChhhhccce
Q psy2654 1833 QAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL-------RTATPATVSRAG 1903 (1949)
Q Consensus 1833 ~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l-------~~asPa~vsr~~ 1903 (1949)
. ...+++| +.++......|-++|++...- +-|..-..+.++++|+.+..- ....|...+|+.
T Consensus 96 -~------~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~ 166 (304)
T 1ojl_A 96 -D------GGTLFLDEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLN 166 (304)
T ss_dssp -T------TSEEEEESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHS
T ss_pred -C------CCEEEEeccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcC
Confidence 1 1468999 456777778888888886542 445556677889999988752 235688899986
Q ss_pred EEEec
Q psy2654 1904 ILYIN 1908 (1949)
Q Consensus 1904 ~v~~~ 1908 (1949)
.+.+.
T Consensus 167 ~~~i~ 171 (304)
T 1ojl_A 167 VVAIE 171 (304)
T ss_dssp SEEEE
T ss_pred eeEEe
Confidence 65544
No 102
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.28 E-value=9.4e-05 Score=93.55 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=35.0
Q ss_pred CeeEEEEeCC-CCCCCCCChhhHhhcccccccccCCHHHHHHHHH
Q psy2654 1585 TVGMFITMNP-GYAGRAELPENLKALFRPCAMVVPDFALICEIML 1628 (1949)
Q Consensus 1585 ~~~~f~tmnp-~~~g~~~LP~~lk~~fr~v~~~~pD~~~i~e~~L 1628 (1949)
++.++++.|+ .|.+.-++++.|+.+|..|.+..|+...+.+++-
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQ 335 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHH
Confidence 5678888887 4544446889999999999999999987776663
No 103
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.26 E-value=0.00071 Score=83.36 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1418 DRCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
+.....+..++..+.. .+++||+|||||++++.+|+.++.
T Consensus 22 ~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445566666666553 468999999999999999999874
No 104
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.24 E-value=0.00034 Score=91.58 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1418 DRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1418 ~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
++....+..++..+...+++||+|||||++++.+|..++.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4566778888999999999999999999999999999964
No 105
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.23 E-value=0.00014 Score=95.37 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=49.2
Q ss_pred cEEEEc--CCCCccchhhHHhhhcCCcceeccCCc--------eeecCCCceEEEEeCCC--CCCChhhhccce----EE
Q psy2654 1842 KWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNE--------RIALTPSMRLLFEISNL--RTATPATVSRAG----IL 1905 (1949)
Q Consensus 1842 ~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge--------~i~~~~~~~~ifE~~~l--~~asPa~vsr~~----~v 1905 (1949)
.++++| +.+++...+.|.++|++...-....++ .-++|.++++|+.++.- ....|+..+||. .+
T Consensus 203 gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i 282 (604)
T 3k1j_A 203 GVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEV 282 (604)
T ss_dssp SEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEE
T ss_pred CEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhccceEe
Confidence 689999 456788888999999876543332222 34567889999998753 679999999994 56
Q ss_pred EecC
Q psy2654 1906 YINP 1909 (1949)
Q Consensus 1906 ~~~~ 1909 (1949)
++++
T Consensus 283 ~l~~ 286 (604)
T 3k1j_A 283 YMRT 286 (604)
T ss_dssp ECCS
T ss_pred eccc
Confidence 6654
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.22 E-value=0.00078 Score=81.28 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHHhccC---CCCCCCCCCChhHHHHHHHHHhcc
Q psy2654 1414 TPLTDRCYITLSQSLHLNMG---GAPAGPAGTGKTETTKDLGKAIGI 1457 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~---~~l~G~~g~GKt~~v~~la~~lg~ 1457 (1949)
.|.-...+..+..++..+.. .+++||+|+|||++++.+|+.++.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 46778888899999998765 358899999999999999999874
No 107
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00042 Score=83.63 Aligned_cols=127 Identities=14% Similarity=0.211 Sum_probs=76.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCC---CCCc
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTG---DGPK 1842 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~---~~~~ 1842 (1949)
+++|+||||+|||++++.+++.+........+..+++... .| .+ .+...+.+...... ...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~-----~~---------~~-~~~~~~~~~~~~~~~~~~~~~ 112 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE-----RG---------IN-VIREKVKEFARTKPIGGASFK 112 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH-----HH---------HH-TTHHHHHHHHHSCCGGGCSCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc-----Cc---------hH-HHHHHHHHHHhhCCcCCCCCe
Confidence 5999999999999999999988632211111122222110 00 01 11122222221111 3457
Q ss_pred EEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCCchhhHHh
Q psy2654 1843 WMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLS 1920 (1949)
Q Consensus 1843 Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~ 1920 (1949)
.|++|.. +++...+.|..+++. .++++++|+.+.+.....|+..|||..+.+.+-. ..-+..
T Consensus 113 vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~---~~~~~~ 176 (327)
T 1iqp_A 113 IIFLDEADALTQDAQQALRRTMEM-------------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR---DEDIAK 176 (327)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCC---HHHHHH
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCCccccCHHHHhhCcEEEecCCC---HHHHHH
Confidence 8999963 344455566666653 2457789999988888999999999999888643 344445
Q ss_pred hhc
Q psy2654 1921 WTD 1923 (1949)
Q Consensus 1921 w~~ 1923 (1949)
|+.
T Consensus 177 ~l~ 179 (327)
T 1iqp_A 177 RLR 179 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 108
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.18 E-value=0.00031 Score=88.19 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=50.5
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCccccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
..|.+|+||+|||||++++.+|..++.+++.++|++-.+ .+.+..+|..+. ...+.+++||++.+..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~ 137 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 137 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 356789999999999999999999999999999976432 122344454443 2356788899987754
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.14 E-value=0.0018 Score=69.86 Aligned_cols=124 Identities=14% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHH
Q psy2654 1750 FILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCL 1829 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~ 1829 (1949)
|+..+..+...+-.+++++++||||+||||++.+||+.+. ++ .....|- .+..|-
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~---g~-i~~fans--------------~s~f~l------- 98 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GA-VISFVNS--------------TSHFWL------- 98 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT---CE-ECCCCCS--------------SSCGGG-------
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC---CC-eeeEEec--------------cchhhh-------
Confidence 3443444443333356899999999999999999998761 11 1111121 111120
Q ss_pred HHHHhhcCCCCCcEEEEcCCCCcc--ch-hhHHhhhcCCcceec----cCCceeecCCCceEEEEeCC---CCCCChhhh
Q psy2654 1830 IREQAQSTGDGPKWMVMDGDIDPM--WI-ESLNTVMDDNKVLTL----ASNERIALTPSMRLLFEISN---LRTATPATV 1899 (1949)
Q Consensus 1830 ~r~~~~~~~~~~~Wiv~Dg~~d~~--w~-e~ln~~lddn~~l~l----~~ge~i~~~~~~~~ifE~~~---l~~asPa~v 1899 (1949)
.. -...+-|++|..-.+. .+ +.|..+||.+.+ ++ -++..+..|| +|+.+.. -...-+...
T Consensus 99 -~~-----l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~-~iD~Khr~~~~~~~~P---lIITtN~~~~~~~~~~~L~ 168 (212)
T 1tue_A 99 -EP-----LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPI-SIDRKHKPLIQLKCPP---ILLTTNIHPAKDNRWPYLE 168 (212)
T ss_dssp -GG-----GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCE-EEC----CCEEECCCC---EEEEESSCTTSSSSCHHHH
T ss_pred -cc-----cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcc-cHHHhhcCccccCCCC---EEEecCCCcccccchhhhh
Confidence 00 0112568888532222 22 467888887632 22 1233333333 5555433 233447899
Q ss_pred ccceEEEec
Q psy2654 1900 SRAGILYIN 1908 (1949)
Q Consensus 1900 sr~~~v~~~ 1908 (1949)
||+-.+.+.
T Consensus 169 SRi~~f~F~ 177 (212)
T 1tue_A 169 SRITVFEFP 177 (212)
T ss_dssp TSCEEEECC
T ss_pred hhEEEEEcC
Confidence 999999876
No 110
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=0.00061 Score=82.09 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=75.2
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhh--cC--CCCCc
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQ--ST--GDGPK 1842 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~--~~--~~~~~ 1842 (1949)
++|+||+|+|||++++.+++.+........+..+++... .| -+.+...++.... .. ....+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-----~~----------~~~i~~~~~~~~~~~~~~~~~~~~ 109 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD-----RG----------IDVVRNQIKHFAQKKLHLPPGKHK 109 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC-----CS----------HHHHHTHHHHHHHBCCCCCTTCCE
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc-----cC----------hHHHHHHHHHHHhccccCCCCCce
Confidence 999999999999999999987632111111122222110 00 0112223333321 11 22367
Q ss_pred EEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCCchhhHHh
Q psy2654 1843 WMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLS 1920 (1949)
Q Consensus 1843 Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~~~~ 1920 (1949)
.||+|.. ++..-.+.|-.+++. .|+++++|+-+.+.....|+..|||..+.+.+-.- .-+..
T Consensus 110 viiiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~---~~~~~ 173 (323)
T 1sxj_B 110 IVILDEADSMTAGAQQALRRTMEL-------------YSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD---EDVLK 173 (323)
T ss_dssp EEEEESGGGSCHHHHHTTHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH---HHHHH
T ss_pred EEEEECcccCCHHHHHHHHHHHhc-------------cCCCceEEEEeCChhhchhHHHhhceEEeecCCCH---HHHHH
Confidence 8999963 333334445455543 24678899999999999999999999999986542 34445
Q ss_pred hhc
Q psy2654 1921 WTD 1923 (1949)
Q Consensus 1921 w~~ 1923 (1949)
|+.
T Consensus 174 ~l~ 176 (323)
T 1sxj_B 174 RLL 176 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 111
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.13 E-value=0.00043 Score=80.59 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=74.2
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
....+|+|+||||+|||++++.+++.+. ..+..++... +.+.+.. -....+..++..... ...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~a~~---~~~ 99 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAE-----FVEVIGG----LGAARVRSLFKEARA---RAP 99 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTT-----TSSSSTT----HHHHHHHHHHHHHHH---TCS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHH-----HHhhccC----hhHHHHHHHHHHHHh---cCC
Confidence 3457899999999999999999998761 2222233222 2222110 011122333333322 123
Q ss_pred cEEEEcCC--C------------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cc-eE
Q psy2654 1842 KWMVMDGD--I------------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RA-GI 1904 (1949)
Q Consensus 1842 ~Wiv~Dg~--~------------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~-~~ 1904 (1949)
..|++|.. + +......++.+|..- +.+.-++++.+|..+.....+.|+.++ |+ ..
T Consensus 100 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--------~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~ 171 (262)
T 2qz4_A 100 CIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM--------DGMGTTDHVIVLASTNRADILDGALMRPGRLDRH 171 (262)
T ss_dssp EEEEEECC-------------------CHHHHHHHHHH--------HTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEE
T ss_pred eEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh--------hCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeE
Confidence 57888853 1 223344556655310 001124577888888888888899988 99 56
Q ss_pred EEecCCCCC-chhhHHhhhcc
Q psy2654 1905 LYINPQDLG-WNPYVLSWTDT 1924 (1949)
Q Consensus 1905 v~~~~~~~~-w~~~~~~w~~~ 1924 (1949)
+++...+.. ...++...+..
T Consensus 172 i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 172 VFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp EECCSCCHHHHHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHHh
Confidence 676654432 33444444443
No 112
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.12 E-value=0.0013 Score=80.87 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
++++|+||||+|||++++.+++.+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999987
No 113
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.11 E-value=0.00077 Score=82.32 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=73.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhc-cCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHH----------
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNA-KKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQ---------- 1833 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~-~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~---------- 1833 (1949)
.+++|+||||+|||++++.+++.+... .....+..+++....... . +.+ .+.. +...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---~-------~~~-~~~~-~~~~~~~~~~~~~~ 126 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS---I-------VRE-KVKN-FARLTVSKPSKHDL 126 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH---H-------HTT-HHHH-HHHSCCCCCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH---H-------HHH-HHHH-Hhhhcccccchhhc
Confidence 349999999999999999999987421 112233344543321100 0 000 0100 0000
Q ss_pred hhcCCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCC
Q psy2654 1834 AQSTGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1834 ~~~~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~ 1911 (1949)
.........-|++|.. +++...+.|..++++. +++.++++-+.+.....|+..+||..+.+.+-.
T Consensus 127 ~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~ 193 (353)
T 1sxj_D 127 ENYPCPPYKIIILDEADSMTADAQSALRRTMETY-------------SGVTRFCLICNYVTRIIDPLASQCSKFRFKALD 193 (353)
T ss_dssp HHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGGGSCHHHHHHSEEEECCCCC
T ss_pred ccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-------------CCCceEEEEeCchhhCcchhhccCceEEeCCCC
Confidence 0111233468889962 3455556666666542 346788998888889999999999998887543
No 114
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.09 E-value=0.00055 Score=84.90 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHh----cceEEEEeCCCCCCHhhh
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAI----GIMVYVFNCSEQMDYRSC 1473 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~l----g~~~~~~n~~~~~~~~~l 1473 (1949)
..+++||+|||||++++.+++.+ +.+++.+||++..+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAI 90 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHH
Confidence 35688999999999999999999 788999999987765443
No 115
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.09 E-value=0.0024 Score=78.54 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=80.9
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC-------CccCcccccccccCCCCCcccChHHHHHHHHhh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP-------KAVTNDELFGIINPSTREWKDGLFSCLIREQAQ 1835 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p-------~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~ 1835 (1949)
..|+++|+||+|+|||++++.+++.+....... ...+.. ......++++ +++......+ .+..++.....
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~~ 113 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCGVCDNCREIEQGRFVDLIE-IDAASRTKVE-DTRDLLDNVQY 113 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSCCSSSHHHHHHHTSCCSSCEE-EETTCSCCSS-CHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCCcccHHHHHHhccCCCceEE-ecccccCCHH-HHHHHHHHHhh
Confidence 456899999999999999999998873211100 000000 0000011221 1111111111 23344444332
Q ss_pred cC-CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCC
Q psy2654 1836 ST-GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDL 1912 (1949)
Q Consensus 1836 ~~-~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~ 1912 (1949)
.+ ....+.||+|.. ++..-.+.|-..+++ .|+++.+|+.+.+.....|+..|||..+.+.+-.
T Consensus 114 ~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~- 179 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD- 179 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCC-
T ss_pred ccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChHhCcHHHHhheeEeeCCCCC-
Confidence 22 233578899963 344444555555543 3667889999999999999999999999888654
Q ss_pred CchhhHHhhhc
Q psy2654 1913 GWNPYVLSWTD 1923 (1949)
Q Consensus 1913 ~w~~~~~~w~~ 1923 (1949)
..-+..|+.
T Consensus 180 --~~~~~~~l~ 188 (373)
T 1jr3_A 180 --VEQIRHQLE 188 (373)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 344455554
No 116
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.00099 Score=81.38 Aligned_cols=140 Identities=15% Similarity=0.191 Sum_probs=75.6
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcc-CCCcccc--c-CCC-------ccCcccccccccCCCCCcccC-hHHHHHHHHh
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAK-KKPMYND--L-EPK-------AVTNDELFGIINPSTREWKDG-LFSCLIREQA 1834 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~-~~~~~~~--i-~p~-------~~~~~el~G~~~~~~~~w~dG-~l~~~~r~~~ 1834 (1949)
++|+||+|+||||+++.+++.+.... +...+.. . .|. .+.....+ .+++......++ .+...+.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 117 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL-EITPSDMGNNDRIVIQELLKEVA 117 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEE-EECCC----CCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceE-EecHhhcCCcchHHHHHHHHHHH
Confidence 99999999999999999999652211 1111000 0 000 00000000 111111111111 2333343332
Q ss_pred hcC-----------CCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhcc
Q psy2654 1835 QST-----------GDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSR 1901 (1949)
Q Consensus 1835 ~~~-----------~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr 1901 (1949)
... ....+.+++|.+ +|+.-.+.|-..|+. .+++.++|+-++++..+.|+..||
T Consensus 118 ~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~-------------~~~~~~~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 118 QMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK-------------YSKNIRLIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp TTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH-------------STTTEEEEEEESCSCSSCHHHHTT
T ss_pred HhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh-------------hcCCCEEEEEeCCHHHHHHHHHhh
Confidence 211 124579999975 355544555555542 245688999999999999999999
Q ss_pred ceEEEecCCCCCchhhHHhhhc
Q psy2654 1902 AGILYINPQDLGWNPYVLSWTD 1923 (1949)
Q Consensus 1902 ~~~v~~~~~~~~w~~~~~~w~~ 1923 (1949)
|..+.+.+-.. .-+..|+.
T Consensus 185 ~~~~~~~~~~~---~~~~~~l~ 203 (354)
T 1sxj_E 185 CLLIRCPAPSD---SEISTILS 203 (354)
T ss_dssp SEEEECCCCCH---HHHHHHHH
T ss_pred ceEEecCCcCH---HHHHHHHH
Confidence 99888876442 33444554
No 117
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.05 E-value=0.00067 Score=79.02 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=50.1
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCH------hhhhhhcccc-cccCcccccccccccc
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDY------RSCGNIYKGL-AQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~------~~l~~~~~g~-~~~g~w~~~de~~~l~ 1496 (1949)
...|.+++||+|||||++++.+|..+|.+.+.+++.+-.+. +.+..+|..+ ....+.+.+||++.+.
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~ 116 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALC 116 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhh
Confidence 44567899999999999999999999999999999775431 2344445443 2345677888888754
No 118
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.99 E-value=0.00097 Score=83.21 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=62.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
++++|+||||+||||+++.+++.+. ..+..++...... .-..+++..+..... ......+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~-----~~f~~l~a~~~~~------------~~ir~~~~~a~~~~~---~~~~~iL 110 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN-----ADVERISAVTSGV------------KEIREAIERARQNRN---AGRRTIL 110 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEETTTCCH------------HHHHHHHHHHHHHHH---TTCCEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEEeccCCH------------HHHHHHHHHHHHhhh---cCCCcEE
Confidence 5799999999999999999998762 1222222111000 001122222222211 2334788
Q ss_pred EEcC--CCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-CC-CCCChhhhccceEEEecCCC
Q psy2654 1845 VMDG--DIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-NL-RTATPATVSRAGILYINPQD 1911 (1949)
Q Consensus 1845 v~Dg--~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-~l-~~asPa~vsr~~~v~~~~~~ 1911 (1949)
++|. .++..-.+.|..++++.. +.+|+.|+ +. ....|+..|||.++.+.+-.
T Consensus 111 fIDEI~~l~~~~q~~LL~~le~~~---------------v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~ 166 (447)
T 3pvs_A 111 FVDEVHRFNKSQQDAFLPHIEDGT---------------ITFIGATTENPSFELNSALLSRARVYLLKSLS 166 (447)
T ss_dssp EEETTTCC------CCHHHHHTTS---------------CEEEEEESSCGGGSSCHHHHTTEEEEECCCCC
T ss_pred EEeChhhhCHHHHHHHHHHHhcCc---------------eEEEecCCCCcccccCHHHhCceeEEeeCCcC
Confidence 8895 344444555666666522 55666653 33 35789999999999887654
No 119
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.0011 Score=80.19 Aligned_cols=114 Identities=20% Similarity=0.298 Sum_probs=68.1
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccCh--HHHHHHHHhhcC---CCCC
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGL--FSCLIREQAQST---GDGP 1841 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~--l~~~~r~~~~~~---~~~~ 1841 (1949)
++++||||+||||+++++++.+........+..+|+.. ..|+ +-..+....... ....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~-----------------~~~~~~ir~~i~~~~~~~~~~~~~~ 111 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD-----------------DRGIDVVRNQIKDFASTRQIFSKGF 111 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS-----------------CCSHHHHHTHHHHHHHBCCSSSCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc-----------------cccHHHHHHHHHHHHhhcccCCCCc
Confidence 99999999999999999999873211111111122211 0121 111222222111 1236
Q ss_pred cEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCC
Q psy2654 1842 KWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQ 1910 (1949)
Q Consensus 1842 ~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~ 1910 (1949)
+.+|+|.. +...-.+.|..+++. .|++.++++-+.....+-|+..|||..+.+.+-
T Consensus 112 ~viiiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l 169 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNALRRVIER-------------YTKNTRFCVLANYAHKLTPALLSQCTRFRFQPL 169 (340)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHH-------------TTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhc-------------CCCCeEEEEEecCccccchhHHhhceeEeccCC
Confidence 88889963 333333444444432 245678888888888999999999998888754
No 120
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.97 E-value=0.00056 Score=84.27 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=48.5
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc-CCCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS-TGDGP 1841 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~-~~~~~ 1841 (1949)
..++++|+||||+|||++.+.+|+.+ ...+..++...++...++|.- ..+.+..++...... .....
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l-----~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~ 138 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL-----DIPIAISDATSLTEAGYVGED-------VENILTRLLQASDWNVQKAQK 138 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEGGGCC---------------CTHHHHHHHHHTTTCHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh-----CCCEEEecchhhhhcCcCCcc-------HHHHHHHHHhhccchhhhcCC
Confidence 35689999999999999999999876 222333443333333444431 123444444322100 00123
Q ss_pred cEEEEcCC--CCcc--------------chhhHHhhhcCC
Q psy2654 1842 KWMVMDGD--IDPM--------------WIESLNTVMDDN 1865 (1949)
Q Consensus 1842 ~Wiv~Dg~--~d~~--------------w~e~ln~~lddn 1865 (1949)
..+++|.. +... ..+.|..+||+.
T Consensus 139 ~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 139 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp SEEEEETGGGC--------------CHHHHHHHHHHHHCC
T ss_pred eEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcc
Confidence 67888842 3333 678888888844
No 121
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.95 E-value=0.0013 Score=74.61 Aligned_cols=122 Identities=14% Similarity=0.196 Sum_probs=68.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCC-CCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPS-TREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~-~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
+.+++|+||||+|||++.++||..+. ++|..+-. ...|-.++ ...+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~--------------------l~G~vn~~~~~f~l~~~-------------~~k~ 150 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP--------------------FYGCVNWTNENFPFNDC-------------VDKM 150 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS--------------------CEEECCTTCSSCTTGGG-------------SSCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc--------------------ccceeeccccccccccc-------------cccE
Confidence 45899999999999999999997541 22221100 00111110 1125
Q ss_pred EEEEcCCC-CccchhhHHhhhcCCccee-cc-CCc-eeecCCCceEEEEeCC-C----------CCCChhhhccceEEEe
Q psy2654 1843 WMVMDGDI-DPMWIESLNTVMDDNKVLT-LA-SNE-RIALTPSMRLLFEISN-L----------RTATPATVSRAGILYI 1907 (1949)
Q Consensus 1843 Wiv~Dg~~-d~~w~e~ln~~lddn~~l~-l~-~ge-~i~~~~~~~~ifE~~~-l----------~~asPa~vsr~~~v~~ 1907 (1949)
.++.|++. .....+.+-.+++.+.... .- .++ .+.. ..+|+-+.. + ....|+.-|||.++.|
T Consensus 151 i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~---tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F 227 (267)
T 1u0j_A 151 VIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDP---TPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFEL 227 (267)
T ss_dssp EEEECSCCEETTTHHHHHHHHTTCCEEC------CCEECC---CCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEEC
T ss_pred EEEeccccchhHHHHHHHHHhCCCcEEEecCcCCcccccC---CCEEEEecCCcccccccCccchhhhHHHhhhEEEEEC
Confidence 66777664 3344567777776544322 10 011 1222 225665543 2 2456889999999999
Q ss_pred cC---CCC------CchhhHHhhh
Q psy2654 1908 NP---QDL------GWNPYVLSWT 1922 (1949)
Q Consensus 1908 ~~---~~~------~w~~~~~~w~ 1922 (1949)
.. .++ .|++++. |.
T Consensus 228 ~~~~p~~~~~lt~~~~~~f~~-w~ 250 (267)
T 1u0j_A 228 TRRLDHDFGKVTKQEVKDFFR-WA 250 (267)
T ss_dssp CSCCCTTSCCCCHHHHHHHHH-HH
T ss_pred CCcCCcccCCCCHHHHHHHHH-HH
Confidence 82 222 3777776 76
No 122
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.95 E-value=0.0005 Score=79.54 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=46.7
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC------CHhhhhhhccccc-ccCccccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM------DYRSCGNIYKGLA-QTGAWGCFDEFNRISV 1497 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~------~~~~l~~~~~g~~-~~g~w~~~de~~~l~~ 1497 (1949)
..|.+++||+|||||++++.+|..++.+++.++|.+-. ....+..+|..+. ...+.+++||++.+..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc
Confidence 34578999999999999999999999999999875421 1122334444332 2345677888876543
No 123
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.0018 Score=77.40 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=75.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
.+||+|+||||||||++++++|+.+ ....+..++. .++++.+...+ ...+..++..+.. .....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~----~~~~~~~i~~-----~~l~~~~~g~~----~~~~~~lf~~a~~---~~~~v 108 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISS-----SDLVSKWLGES----EKLVKNLFQLARE---NKPSI 108 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT----TSCEEEEEEC-----CSSCCSSCCSC----HHHHHHHHHHHHH---TSSEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHc----CCCcEEEEEh-----HHHHhhhhhHH----HHHHHHHHHHHHh---cCCcE
Confidence 4799999999999999999999865 1222233332 24444332211 2233333333322 23367
Q ss_pred EEEcCCC---------Cccchh-hHHhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccc-eEEEecC
Q psy2654 1844 MVMDGDI---------DPMWIE-SLNTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1844 iv~Dg~~---------d~~w~e-~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~-~~v~~~~ 1909 (1949)
|+||..= +..... .+|.+| |.-. .-+.++.+|..|.....+.|+..+|| ..+++..
T Consensus 109 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~ 178 (322)
T 1xwi_A 109 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 178 (322)
T ss_dssp EEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCC
T ss_pred EEeecHHHhccccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCC
Confidence 8888421 011111 112222 2210 12356778888888889999999999 5778876
Q ss_pred CCCC-chhhHHhhhcc
Q psy2654 1910 QDLG-WNPYVLSWTDT 1924 (1949)
Q Consensus 1910 ~~~~-w~~~~~~w~~~ 1924 (1949)
.+.. ...++...+..
T Consensus 179 P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 179 PEPHARAAMFKLHLGT 194 (322)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhc
Confidence 5532 33444444443
No 124
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.93 E-value=0.00086 Score=78.68 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=46.0
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCC------Hhhhhhhccccc-ccCcccccccccccc
Q psy2654 1431 NMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD------YRSCGNIYKGLA-QTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1431 ~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~------~~~l~~~~~g~~-~~g~w~~~de~~~l~ 1496 (1949)
..|.+++||+|||||++++.+|..++.+++.++|.+-.+ ...+..++..+. ...+.+++||++.+.
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~ 145 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHH
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhh
Confidence 345789999999999999999999999999999864211 122334444333 233567778877654
No 125
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.92 E-value=0.0019 Score=67.49 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=47.5
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCHhhhhhhcccccccCccccccccccccchh
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEV 1499 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~~~l~~~~ 1499 (1949)
.+.+..++||+|+|||++++.++..+ |..++.+++.+-... ........+++||+..++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------HHHhCCCEEEEeCccccChHH
Confidence 34556689999999999999999998 888888988775543 123345677889988876654
No 126
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.90 E-value=0.0018 Score=75.49 Aligned_cols=125 Identities=16% Similarity=0.250 Sum_probs=66.8
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
..+||+|+||||+|||++++++++... ..+..++...+. ..+.|. +..-..++|..+.+. ...
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~~~-~~~~~~----~~~~~~~~~~~a~~~-------~~~ 105 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGSSFI-EMFVGL----GASRVRDLFETAKKQ-------APS 105 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSCTTT-TSCSSS----CSSSSSTTHHHHHHS-------CSC
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechHHHH-Hhhcch----HHHHHHHHHHHHHhc-------CCe
Confidence 356899999999999999999998762 122333333221 112221 112233455443321 235
Q ss_pred EEEEcCC--C------------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cce-EE
Q psy2654 1843 WMVMDGD--I------------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RAG-IL 1905 (1949)
Q Consensus 1843 Wiv~Dg~--~------------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~~-~v 1905 (1949)
.|++|.. + +......++.+|.. -++ .-..+.++.+|..+.....+.|+.++ |+. .+
T Consensus 106 vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~------l~~-~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i 178 (268)
T 2r62_A 106 IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAE------MDG-FGSENAPVIVLAATNRPEILDPALMRPGRFDRQV 178 (268)
T ss_dssp EEEESCGGGTTC----------CCCSCSSTTTTTTT------TTC-SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCC
T ss_pred EEEEeChhhhcccccccccCCCchhHHHHHHHHHHH------hhC-cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEE
Confidence 7888853 1 11122233333321 011 00123446777777777778899988 553 35
Q ss_pred EecCCC
Q psy2654 1906 YINPQD 1911 (1949)
Q Consensus 1906 ~~~~~~ 1911 (1949)
++...+
T Consensus 179 ~i~~p~ 184 (268)
T 2r62_A 179 LVDKPD 184 (268)
T ss_dssp BCCCCC
T ss_pred EecCcC
Confidence 555444
No 127
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.89 E-value=0.00034 Score=85.65 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=60.9
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhc-CCCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQS-TGDGP 1841 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~-~~~~~ 1841 (1949)
...+|+|+||||||||++.+++|+.+ ...+..++...+....++|.-. .|.+..+++..... .....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~ 117 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTLTEAGYVGEDV-------ENIIQKLLQKCDYDVQKAQR 117 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHHTTCHHHHHHH-------THHHHHHHHHTTTCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHhcccccccccH-------HHHHHHHHHHhhhhHHhcCC
Confidence 34689999999999999999999876 2233334443333344555321 23444444432100 00012
Q ss_pred cEEEEcCC--CCcc--------------chhhHHhhhcCCcceeccC-Cc--------eeecCCCceEEEEeC
Q psy2654 1842 KWMVMDGD--IDPM--------------WIESLNTVMDDNKVLTLAS-NE--------RIALTPSMRLLFEIS 1889 (1949)
Q Consensus 1842 ~Wiv~Dg~--~d~~--------------w~e~ln~~lddn~~l~l~~-ge--------~i~~~~~~~~ifE~~ 1889 (1949)
..|+||.. +.+. ....|..+|| +....+++ |. ++....|..+|+...
T Consensus 118 ~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~ 189 (363)
T 3hws_A 118 GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 189 (363)
T ss_dssp CEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEEC
T ss_pred cEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCC
Confidence 57888942 2222 7888889998 55544432 22 244455555555543
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.89 E-value=0.00094 Score=79.31 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=66.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
.++|+|+||||||||++++++++.+ ...+..++. .++++.+...+ ......++..+.. .....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~-----~~l~~~~~~~~----~~~~~~~~~~~~~---~~~~v 116 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC-----SATFLNISA-----ASLTSKYVGDG----EKLVRALFAVARH---MQPSI 116 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT-----TCEEEEEES-----TTTSSSSCSCH----HHHHHHHHHHHHH---TCSEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEeeH-----HHHhhcccchH----HHHHHHHHHHHHH---cCCcE
Confidence 5799999999999999999999865 122222332 34444442221 1112222222211 23367
Q ss_pred EEEcCCC---Cc------cch-hhHHhh---hcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccc-eEEEecC
Q psy2654 1844 MVMDGDI---DP------MWI-ESLNTV---MDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1844 iv~Dg~~---d~------~w~-e~ln~~---lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~-~~v~~~~ 1909 (1949)
|++|..- +. ... ...+.+ +|.-. .-.....+.+|..|.+...+.|+..+|| ..+++..
T Consensus 117 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~ 188 (297)
T 3b9p_A 117 IFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP--------GNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSL 188 (297)
T ss_dssp EEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGGGBCHHHHHHCCEEEECCC
T ss_pred EEeccHHHhccccccCcchHHHHHHHHHHHHHhccc--------ccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCC
Confidence 8888531 10 000 111112 22100 0011245778888888889999999999 5667775
Q ss_pred CCC
Q psy2654 1910 QDL 1912 (1949)
Q Consensus 1910 ~~~ 1912 (1949)
.+.
T Consensus 189 p~~ 191 (297)
T 3b9p_A 189 PDE 191 (297)
T ss_dssp CCH
T ss_pred cCH
Confidence 543
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.86 E-value=0.0015 Score=78.54 Aligned_cols=128 Identities=17% Similarity=0.084 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhcCC---CCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhccccchhhcc------cCcccccc
Q psy2654 1033 CYITLSQSLHLNMGG---APAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQ------TGAWGCFD 1103 (1949)
Q Consensus 1033 ~~~~l~~al~~~~~~---~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~~~~~~g~~~------~g~w~~fd 1103 (1949)
....+..++.....+ ...||+|||||++++.+|+.+|..++.+||++.. ...+...+...+. .+...++|
T Consensus 34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiD 112 (324)
T 3u61_B 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVID 112 (324)
T ss_dssp HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEE
Confidence 344555555543322 3478899999999999999999999999998743 4444444444333 34578999
Q ss_pred ccccch-hhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccCchh
Q psy2654 1104 EFNRIS-VEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFA 1182 (1949)
Q Consensus 1104 e~~~l~-~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~pd~~ 1182 (1949)
|++.++ .+....+...+... ..++.+.+|.|+. ..+++.|++.|..+.+..|+..
T Consensus 113 Ei~~l~~~~~~~~L~~~le~~--------------------~~~~~iI~~~n~~----~~l~~~l~sR~~~i~~~~~~~~ 168 (324)
T 3u61_B 113 EFDRSGLAESQRHLRSFMEAY--------------------SSNCSIIITANNI----DGIIKPLQSRCRVITFGQPTDE 168 (324)
T ss_dssp SCCCGGGHHHHHHHHHHHHHH--------------------GGGCEEEEEESSG----GGSCTTHHHHSEEEECCCCCHH
T ss_pred CCcccCcHHHHHHHHHHHHhC--------------------CCCcEEEEEeCCc----cccCHHHHhhCcEEEeCCCCHH
Confidence 999998 66554443333221 1233455566653 2688899999998888888866
Q ss_pred HHH
Q psy2654 1183 LIC 1185 (1949)
Q Consensus 1183 ~i~ 1185 (1949)
.+.
T Consensus 169 e~~ 171 (324)
T 3u61_B 169 DKI 171 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 130
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.86 E-value=0.0017 Score=79.00 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=68.6
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC-CCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST-GDGP 1841 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~-~~~~ 1841 (1949)
..++|+|+||||+|||++++++|+.+ ...+..++. .++++.+. |-....++...... ....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i~~-----~~l~~~~~--------g~~~~~~~~~~~~a~~~~~ 177 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSISA-----SSLTSKWV--------GEGEKMVRALFAVARCQQP 177 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEEEG-----GGGCCSST--------THHHHHHHHHHHHHHHTCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEEeh-----HHhhcccc--------chHHHHHHHHHHHHHhcCC
Confidence 45799999999999999999999865 222333332 34444432 11222333222111 1223
Q ss_pred cEEEEcCC--C--------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce-EEEecCC
Q psy2654 1842 KWMVMDGD--I--------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG-ILYINPQ 1910 (1949)
Q Consensus 1842 ~Wiv~Dg~--~--------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~-~v~~~~~ 1910 (1949)
..|++|.. + +..-...++.+| ..-+|-....+.++.+|..|.....+.|+..+||. .+++...
T Consensus 178 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL------~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p 251 (357)
T 3d8b_A 178 AVIFIDEIDSLLSQRGDGEHESSRRIKTEFL------VQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLP 251 (357)
T ss_dssp EEEEEETHHHHTBC------CHHHHHHHHHH------HHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCC
T ss_pred eEEEEeCchhhhccCCCCcchHHHHHHHHHH------HHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCc
Confidence 67888842 0 000111122222 11112112234577888888888889999999997 5677654
Q ss_pred C
Q psy2654 1911 D 1911 (1949)
Q Consensus 1911 ~ 1911 (1949)
+
T Consensus 252 ~ 252 (357)
T 3d8b_A 252 E 252 (357)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.84 E-value=0.0015 Score=80.80 Aligned_cols=140 Identities=11% Similarity=0.110 Sum_probs=71.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
.++|+|+||||+|||++++++|... ...+..++.. ++.|.+.... .+.+..++..+... ....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~~~-----~l~~~~~g~~----~~~~~~~~~~a~~~---~~~i 210 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAA-----SLTSKYVGEG----EKLVRALFAVAREL---QPSI 210 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEECSC-----CC-------C----HHHHHHHHHHHHHS---SSEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEeeHH-----HhhccccchH----HHHHHHHHHHHHhc---CCeE
Confidence 4799999999999999999998765 2334444443 3444442211 22333344333221 2256
Q ss_pred EEEcCCCCccc-------hhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce-EEEecCCCCC-c
Q psy2654 1844 MVMDGDIDPMW-------IESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG-ILYINPQDLG-W 1914 (1949)
Q Consensus 1844 iv~Dg~~d~~w-------~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~-~v~~~~~~~~-w 1914 (1949)
|++|.. |... .+....++. ..|..-+|-.-..+..+.+|..+.....+.|+..+||. .+++...+.. -
T Consensus 211 l~iDEi-d~l~~~~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r 287 (389)
T 3vfd_A 211 IFIDQV-DSLLCERREGEHDASRRLKT--EFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 287 (389)
T ss_dssp EEEETG-GGGC--------CTHHHHHH--HHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHH
T ss_pred EEEECc-hhhcccCCCccchHHHHHHH--HHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHH
Confidence 788852 1110 000111110 01111112222234678889999988899999999996 6888765432 2
Q ss_pred hhhHHhhhc
Q psy2654 1915 NPYVLSWTD 1923 (1949)
Q Consensus 1915 ~~~~~~w~~ 1923 (1949)
..++...+.
T Consensus 288 ~~il~~~~~ 296 (389)
T 3vfd_A 288 LLLLKNLLC 296 (389)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 233344443
No 132
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.82 E-value=0.0023 Score=77.85 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=63.7
Q ss_pred cccchHHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcce--EEEEeCCCCCCHh---hh----hhhccccc---
Q psy2654 1414 TPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIM--VYVFNCSEQMDYR---SC----GNIYKGLA--- 1481 (1949)
Q Consensus 1414 t~~t~r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~--~~~~n~~~~~~~~---~l----~~~~~g~~--- 1481 (1949)
+|...+....+..+-....++++.|++||||+.+++.+....++. ++.+||..-.+.. .| .+.|.|+.
T Consensus 135 s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~ 214 (368)
T 3dzd_A 135 HPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRK 214 (368)
T ss_dssp SHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCE
T ss_pred chHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccccc
Confidence 455566666666666677788899999999999999999998876 9999998643321 12 12233331
Q ss_pred ------ccCccccccccccccchhhHHHH
Q psy2654 1482 ------QTGAWGCFDEFNRISVEVLSVVA 1504 (1949)
Q Consensus 1482 ------~~g~w~~~de~~~l~~~~ls~~~ 1504 (1949)
..|.-+.+||++.++.++...+.
T Consensus 215 ~g~~~~a~~gtlfldei~~l~~~~Q~~Ll 243 (368)
T 3dzd_A 215 KGKLELADQGTLFLDEVGELDQRVQAKLL 243 (368)
T ss_dssp ECHHHHTTTSEEEEETGGGSCHHHHHHHH
T ss_pred CChHhhcCCCeEEecChhhCCHHHHHHHH
Confidence 13445788888888887776653
No 133
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.79 E-value=0.0022 Score=80.34 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=75.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
..++|+|+||||||||++++++|+.+ ....+..++. .++++.+...+ ...+..++..+.. ....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~----~~~~~~~v~~-----~~l~~~~~g~~----~~~~~~~f~~a~~---~~~~ 229 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISS-----SDLVSKWLGES----EKLVKNLFQLARE---NKPS 229 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC----CSSEEEEECC-----C---------C----CCTHHHHHHHHHH---SCSE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCCCEEEEeH-----HHHHhhhcchH----HHHHHHHHHHHHH---cCCe
Confidence 34799999999999999999999865 1222333443 23444432222 2334444444322 1235
Q ss_pred EEEEcCC--C-------Cccc-hhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce-EEEecCCC
Q psy2654 1843 WMVMDGD--I-------DPMW-IESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG-ILYINPQD 1911 (1949)
Q Consensus 1843 Wiv~Dg~--~-------d~~w-~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~-~v~~~~~~ 1911 (1949)
.|+||.. + +... -..+|.+|.. -+|- ...+.++.+|..|.....+.|+..+||. .+++...+
T Consensus 230 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~------l~~~-~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~ 302 (444)
T 2zan_A 230 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQ------MQGV-GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 302 (444)
T ss_dssp EEEESCTTTTCCCSSCCCCGGGHHHHHHHHTT------TTCS-SCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCC
T ss_pred EEEEechHhhccCCCCccccHHHHHHHHHHHH------HhCc-ccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcC
Confidence 7888842 1 1111 1122333321 1110 1124678888899888999999999995 77777655
Q ss_pred CC-chhhHHhhhcc
Q psy2654 1912 LG-WNPYVLSWTDT 1924 (1949)
Q Consensus 1912 ~~-w~~~~~~w~~~ 1924 (1949)
.. ...++...+..
T Consensus 303 ~~~r~~il~~~l~~ 316 (444)
T 2zan_A 303 AHARAAMFRLHLGS 316 (444)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 32 33444444443
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.0015 Score=80.86 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=71.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC------CCcccccCCCccC----------cccccccccCCCCCcc-cChH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK------KPMYNDLEPKAVT----------NDELFGIINPSTREWK-DGLF 1826 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~------~~~~~~i~p~~~~----------~~el~G~~~~~~~~w~-dG~l 1826 (1949)
.++|+|+||||+|||++++.+++.+..... ...+..+|..... ..++.|.-.+. .+.. ..++
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~ 123 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK-HGINLGEYI 123 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS-SSSCTHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC-CCCCHHHHH
Confidence 357999999999999999999987743311 2223333322211 12233321111 1121 2233
Q ss_pred HHHHHHHhhcCCCCCcEEEEcCC--CC-ccchhh-HHhhhcCCcceeccCCceeecCCCceEEEEeCCC---CCCChhhh
Q psy2654 1827 SCLIREQAQSTGDGPKWMVMDGD--ID-PMWIES-LNTVMDDNKVLTLASNERIALTPSMRLLFEISNL---RTATPATV 1899 (1949)
Q Consensus 1827 ~~~~r~~~~~~~~~~~Wiv~Dg~--~d-~~w~e~-ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l---~~asPa~v 1899 (1949)
..+.... . .....|++|.. ++ ..+.+. +..+++-. +++++|+-+.+. ....|+..
T Consensus 124 ~~l~~~l-~---~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~~~~l~~~l~ 185 (384)
T 2qby_B 124 DKIKNGT-R---NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINVRDYMEPRVL 185 (384)
T ss_dssp HHHHHHH-S---SSCEEEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTTTTTSCHHHH
T ss_pred HHHHHHh-c---cCCCEEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCchHhhhCHHHH
Confidence 3333222 1 11238888963 11 112344 55554321 678888888876 67899999
Q ss_pred ccc-eEEEecCCC
Q psy2654 1900 SRA-GILYINPQD 1911 (1949)
Q Consensus 1900 sr~-~~v~~~~~~ 1911 (1949)
+|+ ..+.+.+-.
T Consensus 186 sr~~~~i~l~~l~ 198 (384)
T 2qby_B 186 SSLGPSVIFKPYD 198 (384)
T ss_dssp HTCCCEEEECCCC
T ss_pred hcCCCeEEECCCC
Confidence 994 677787643
No 135
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.79 E-value=0.00077 Score=81.91 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=73.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
.++|+|+||||||||++++++|+.+. ..+..+ +..++++.+.... ...+..++..+.. .....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v-----~~~~l~~~~~g~~----~~~~~~~f~~a~~---~~~~v 146 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN-----STFFSV-----SSSDLVSKWMGES----EKLVKQLFAMARE---NKPSI 146 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEE-----EHHHHHSCC---C----HHHHHHHHHHHHH---TSSEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEe-----eHHHHhhhhcchH----HHHHHHHHHHHHH---cCCeE
Confidence 46899999999999999999998772 222222 2234444442211 1122223332211 22367
Q ss_pred EEEcCC--CCc-------c----chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccc-eEEEecC
Q psy2654 1844 MVMDGD--IDP-------M----WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1844 iv~Dg~--~d~-------~----w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~-~~v~~~~ 1909 (1949)
|+||.. +.+ . +...|-..||.-. ..+..+.+|..|.....+.|+..+|| ..+++..
T Consensus 147 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~ 216 (355)
T 2qp9_X 147 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 216 (355)
T ss_dssp EEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGGGSCHHHHHTCCEEEECCC
T ss_pred EEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCC
Confidence 888841 110 0 1222222233110 12356778888888888999999999 6677776
Q ss_pred CCCC-chhhHHhhhccC
Q psy2654 1910 QDLG-WNPYVLSWTDTR 1925 (1949)
Q Consensus 1910 ~~~~-w~~~~~~w~~~~ 1925 (1949)
.+.. ...++...+...
T Consensus 217 P~~~~r~~il~~~l~~~ 233 (355)
T 2qp9_X 217 PDLAARTTMFEINVGDT 233 (355)
T ss_dssp CCHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHhhC
Confidence 5532 334444444443
No 136
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.77 E-value=0.0018 Score=76.83 Aligned_cols=127 Identities=18% Similarity=0.250 Sum_probs=70.7
Q ss_pred HHHHHHh--cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHH
Q psy2654 1756 QLVELFA--VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQ 1833 (1949)
Q Consensus 1756 ~l~~~l~--~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~ 1833 (1949)
++|..+. ..++|+|+||||||||++++++|..+. ..+..++. .++++.+...+. ..+..++..+
T Consensus 39 ~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~-----~~l~~~~~g~~~----~~~~~~f~~a 104 (301)
T 3cf0_A 39 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKG-----PELLTMWFGESE----ANVREIFDKA 104 (301)
T ss_dssp HHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECH-----HHHHHHHHTTCT----THHHHHHHHH
T ss_pred HHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEh-----HHHHhhhcCchH----HHHHHHHHHH
Confidence 3444433 457899999999999999999998651 22222332 233222221111 1223333333
Q ss_pred hhcCCCCCcEEEEcCCCCcc-----------------chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCCh
Q psy2654 1834 AQSTGDGPKWMVMDGDIDPM-----------------WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATP 1896 (1949)
Q Consensus 1834 ~~~~~~~~~Wiv~Dg~~d~~-----------------w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asP 1896 (1949)
.. .....|++|.. |.. .+..|-..||. +.-+.++.+|..|.....+.|
T Consensus 105 ~~---~~p~il~iDEi-d~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~-----------~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 105 RQ---AAPCVLFFDEL-DSIAKARGGNIGDGGGAADRVINQILTEMDG-----------MSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp HH---TCSEEEEECST-THHHHHHTTTTCCSSCSCCHHHHHHHHHHHS-----------SCTTSSEEEEEEESCGGGSCG
T ss_pred Hh---cCCeEEEEECh-HHHhhccCCCcCCcchHHHHHHHHHHHHhhc-----------ccCCCCEEEEEecCCccccCh
Confidence 22 12356777852 211 11222222231 112456889999988888999
Q ss_pred hhhc--cce-EEEecCCC
Q psy2654 1897 ATVS--RAG-ILYINPQD 1911 (1949)
Q Consensus 1897 a~vs--r~~-~v~~~~~~ 1911 (1949)
+.++ |+. .+++...+
T Consensus 170 al~r~gRf~~~i~i~~p~ 187 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPD 187 (301)
T ss_dssp GGGSTTSSCEEEECCCCC
T ss_pred HHhcCCccceEEecCCcC
Confidence 9998 885 67776544
No 137
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.68 E-value=0.0021 Score=75.03 Aligned_cols=119 Identities=10% Similarity=0.115 Sum_probs=64.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
.++|+|+||||+|||++++.+++.. +. .+..++.. .+++|.... -..+.+..++..+.. .....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~----~~-~~~~i~~~----~~~~g~~~~----~~~~~~~~~~~~~~~---~~~~v 127 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES----NF-PFIKICSP----DKMIGFSET----AKCQAMKKIFDDAYK---SQLSC 127 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH----TC-SEEEEECG----GGCTTCCHH----HHHHHHHHHHHHHHT---SSEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh----CC-CEEEEeCH----HHhcCCchH----HHHHHHHHHHHHHHh---cCCcE
Confidence 4689999999999999999999875 22 22223221 256664211 011122333333321 23467
Q ss_pred EEEcCC------------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCCh-hhhccc-eEEEec
Q psy2654 1844 MVMDGD------------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATP-ATVSRA-GILYIN 1908 (1949)
Q Consensus 1844 iv~Dg~------------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asP-a~vsr~-~~v~~~ 1908 (1949)
|++|.. ....+++.|..+++... ..+..+.+|..+.......| +..+|+ ..+++.
T Consensus 128 l~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~----------~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p 196 (272)
T 1d2n_A 128 VVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVP 196 (272)
T ss_dssp EEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEESCHHHHHHTTCTTTSSEEEECC
T ss_pred EEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc----------CCCCCEEEEEecCChhhcchhhhhcccceEEcCC
Confidence 888951 13345566666554311 12234556666665554555 567784 445553
No 138
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.66 E-value=0.00046 Score=71.97 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=60.5
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhh---cceEEEeeCCccchhhhccccchhhcccCcccccccc
Q psy2654 1029 LTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEF 1105 (1949)
Q Consensus 1029 ~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~l---g~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~ 1105 (1949)
...+....+..+.....+..+.||+|||||.+.+.++... +.+++ ++|....+-......+.- + .|.-.++||+
T Consensus 9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~-a-~~g~l~ldei 85 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIAL-A-QGGTLVLSHP 85 (145)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHH-H-TTSCEEEECG
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHH-c-CCcEEEEcCh
Confidence 3344555555554555566789999999999999999987 66788 999876554222222221 1 3445799999
Q ss_pred ccchhhHHHHHHHHH
Q psy2654 1106 NRISVEVLSVVAVQV 1120 (1949)
Q Consensus 1106 ~~l~~~~Ls~i~~~l 1120 (1949)
+.++.+....+...+
T Consensus 86 ~~l~~~~q~~Ll~~l 100 (145)
T 3n70_A 86 EHLTREQQYHLVQLQ 100 (145)
T ss_dssp GGSCHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHH
Confidence 999987766544443
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.64 E-value=0.0016 Score=80.67 Aligned_cols=39 Identities=21% Similarity=0.033 Sum_probs=33.6
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHh------cceEEEEeCCCCCCH
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAI------GIMVYVFNCSEQMDY 1470 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~l------g~~~~~~n~~~~~~~ 1470 (1949)
...+++||+|||||++++.+++.+ |.+++.++|.+..+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 345688999999999999999999 899999999875553
No 140
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.63 E-value=0.0063 Score=70.35 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=64.6
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPK 1842 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~ 1842 (1949)
...||+|+|||||||||++++++..+ ...+..++...+ .+.+...+ ..-+..++..+. .....
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~-----~~~~~~i~~~~~-----~~~~~~~~----~~~~~~~~~~a~---~~~~~ 106 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTISGSDF-----VEMFVGVG----ASRVRDMFEQAK---KAAPC 106 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEECSCSS-----TTSCCCCC----HHHHHHHHHHHH---TTCSE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc-----CCCEEEEeHHHH-----HHHhhhhh----HHHHHHHHHHHH---HcCCe
Confidence 35789999999999999999999876 122333443332 22221111 111223333321 12235
Q ss_pred EEEEcCC-----C-C-------ccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cce-EEE
Q psy2654 1843 WMVMDGD-----I-D-------PMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RAG-ILY 1906 (1949)
Q Consensus 1843 Wiv~Dg~-----~-d-------~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~~-~v~ 1906 (1949)
.+++|.. - . ..-.+.++.+|.. -+ .+.-+.++.+|..+.....+.|+..+ |+. .++
T Consensus 107 il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~------l~--~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~ 178 (257)
T 1lv7_A 107 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE------MD--GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 178 (257)
T ss_dssp EEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH------HH--TCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEE
T ss_pred eehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHH------hh--CcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEE
Confidence 6788852 0 0 0001223333210 00 01124567788888888889999987 764 455
Q ss_pred ecC
Q psy2654 1907 INP 1909 (1949)
Q Consensus 1907 ~~~ 1909 (1949)
+..
T Consensus 179 i~~ 181 (257)
T 1lv7_A 179 VGL 181 (257)
T ss_dssp CCC
T ss_pred eCC
Confidence 554
No 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.60 E-value=0.0014 Score=78.72 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=68.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
.++|+|+||||||||++++++|+.. ...+..++ ..++++.+... ..+.+..++..+.. ....-
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~v~-----~~~l~~~~~g~----~~~~~~~~f~~a~~---~~~~v 113 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVS-----SSDLVSKWMGE----SEKLVKQLFAMARE---NKPSI 113 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH-----TCEEEEEE-----HHHHHTTTGGG----HHHHHHHHHHHHHH---TSSEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-----CCCEEEEc-----hHHHhhcccch----HHHHHHHHHHHHHh---cCCeE
Confidence 4689999999999999999999876 22222232 23444443211 12233333333322 12356
Q ss_pred EEEcCC--CCc-----------cchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccc-eEEEecC
Q psy2654 1844 MVMDGD--IDP-----------MWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRA-GILYINP 1909 (1949)
Q Consensus 1844 iv~Dg~--~d~-----------~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~-~~v~~~~ 1909 (1949)
|++|.. +.+ .....+-..+|.- ...+.++.+|..|.....+.|+..+|| ..+++..
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~ 183 (322)
T 3eie_A 114 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV----------GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183 (322)
T ss_dssp EEEECGGGGSCC------CCTHHHHHHHHHHHGGG----------GTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCC
T ss_pred EEechhhhhhccCCCCcchHHHHHHHHHHHHhccc----------cccCCceEEEEecCChhhCCHHHHcccCeEEEeCC
Confidence 777842 110 1122222222211 012346778889988889999999999 4566765
Q ss_pred CC
Q psy2654 1910 QD 1911 (1949)
Q Consensus 1910 ~~ 1911 (1949)
.+
T Consensus 184 p~ 185 (322)
T 3eie_A 184 PD 185 (322)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 142
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.58 E-value=0.0022 Score=77.25 Aligned_cols=81 Identities=22% Similarity=0.211 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhc-------cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhhcccccccCcccccccc
Q psy2654 1420 CYITLSQSLHLN-------MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEF 1492 (1949)
Q Consensus 1420 ~~~~l~~al~~~-------~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~~~g~~~~g~w~~~de~ 1492 (1949)
....+..++..+ ...+++||+|+|||++++.+|..+|.++...+++...+...+..++... ..+..+++||+
T Consensus 33 ~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~-~~~~v~~iDE~ 111 (334)
T 1in4_A 33 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL-ERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHC-CTTCEEEEETG
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHc-cCCCEEEEcch
Confidence 344455555543 4567999999999999999999999998888776655555555444322 34678899999
Q ss_pred ccccchhhH
Q psy2654 1493 NRISVEVLS 1501 (1949)
Q Consensus 1493 ~~l~~~~ls 1501 (1949)
+.+...+..
T Consensus 112 ~~l~~~~~e 120 (334)
T 1in4_A 112 HRLNKAVEE 120 (334)
T ss_dssp GGCCHHHHH
T ss_pred hhcCHHHHH
Confidence 999874433
No 143
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.57 E-value=0.002 Score=80.30 Aligned_cols=123 Identities=13% Similarity=0.239 Sum_probs=67.8
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcC-CCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST-GDGP 1841 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~-~~~~ 1841 (1949)
..+||+|+||||+|||+++++++... ...+..++. .++...+. |.-..-+|...... ...+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~is~-----~~~~~~~~--------g~~~~~~r~lf~~A~~~~p 109 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA-----NVPFFHISG-----SDFVELFV--------GVGAARVRDLFAQAKAHAP 109 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEG-----GGTTTCCT--------THHHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCH-----HHHHHHHh--------cccHHHHHHHHHHHHhcCC
Confidence 34789999999999999999999866 222222332 22222221 11122222221111 1234
Q ss_pred cEEEEcCC-------------CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhc--cce-EE
Q psy2654 1842 KWMVMDGD-------------IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVS--RAG-IL 1905 (1949)
Q Consensus 1842 ~Wiv~Dg~-------------~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vs--r~~-~v 1905 (1949)
..|++|.. .++.....+|.+|.. -+ .+.-+..+.+|..|.....+-|+.+. |+. .|
T Consensus 110 ~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~------ld--~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i 181 (476)
T 2ce7_A 110 CIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE------MD--GFDSKEGIIVMAATNRPDILDPALLRPGRFDKKI 181 (476)
T ss_dssp EEEEEETGGGTCCC---------CHHHHHHHHHHHH------HH--HSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEE
T ss_pred CEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH------Hh--ccCCCCCEEEEEecCChhhhchhhcccCcceeEe
Confidence 67888853 123334455655521 00 01113467788888888888888875 665 66
Q ss_pred EecCCC
Q psy2654 1906 YINPQD 1911 (1949)
Q Consensus 1906 ~~~~~~ 1911 (1949)
+++..+
T Consensus 182 ~i~~Pd 187 (476)
T 2ce7_A 182 VVDPPD 187 (476)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 666544
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.56 E-value=0.00045 Score=71.90 Aligned_cols=88 Identities=9% Similarity=-0.059 Sum_probs=61.4
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhccccchhhcccCcccccccccc
Q psy2654 1028 PLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNR 1107 (1949)
Q Consensus 1028 p~~~r~~~~l~~al~~~~~~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~~~ 1107 (1949)
+...++...+..+.....+..+.||+|||||.+++.++...+ +++.++|++..+-. ....+.- + .|.-.++||++.
T Consensus 11 ~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-~~~~~~~-a-~~~~l~lDei~~ 86 (143)
T 3co5_A 11 AAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-PMELLQK-A-EGGVLYVGDIAQ 86 (143)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-HHHHHHH-T-TTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-hhhHHHh-C-CCCeEEEeChHH
Confidence 344555556655555666677899999999999999999988 89999998754322 1122211 1 244679999999
Q ss_pred chhhHHHHHHHH
Q psy2654 1108 ISVEVLSVVAVQ 1119 (1949)
Q Consensus 1108 l~~~~Ls~i~~~ 1119 (1949)
++.+....+...
T Consensus 87 l~~~~q~~Ll~~ 98 (143)
T 3co5_A 87 YSRNIQTGITFI 98 (143)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 998876655433
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.004 Score=75.89 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=42.9
Q ss_pred cCCCcccccccccchhhHHHHHHHHHhHhhhhhhccccceeccceEEEecCeeEEEEeCCCCCCCCCChhhHhhcccccc
Q psy2654 1535 TGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCA 1614 (1949)
Q Consensus 1535 ~g~w~~~de~n~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~f~tmnp~~~g~~~LP~~lk~~fr~v~ 1614 (1949)
...-.++||...++.+....+...+.. . .+++.++++.|.. ..+++.++++|..+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~-------~-------------~~~~~~Il~t~~~----~~l~~~l~sR~~~~~ 189 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEK-------Y-------------SKNIRLIMVCDSM----SPIIAPIKSQCLLIR 189 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHH-------S-------------TTTEEEEEEESCS----CSSCHHHHTTSEEEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHh-------h-------------cCCCEEEEEeCCH----HHHHHHHHhhceEEe
Confidence 344566788877776655443333322 0 1233444444421 247889999999999
Q ss_pred cccCCHHHHHHHHH
Q psy2654 1615 MVVPDFALICEIML 1628 (1949)
Q Consensus 1615 ~~~pD~~~i~e~~L 1628 (1949)
+..|+...+.++.-
T Consensus 190 ~~~~~~~~~~~~l~ 203 (354)
T 1sxj_E 190 CPAPSDSEISTILS 203 (354)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHH
Confidence 99999887666554
No 146
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.53 E-value=0.006 Score=65.77 Aligned_cols=30 Identities=30% Similarity=0.186 Sum_probs=25.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVF 1462 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~ 1462 (1949)
+.+++||+|||||+++.+||+.++-.++.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~~f 89 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVISF 89 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 356899999999999999999997765544
No 147
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.42 E-value=0.0082 Score=68.45 Aligned_cols=138 Identities=9% Similarity=0.011 Sum_probs=83.2
Q ss_pred chhhHHHHHHHHHHH--hcCCCCCCCCCCCcchhHHHHHHhhc---ceEEEeeCCccchhhhccccchhhcccCcccccc
Q psy2654 1029 LTDRCYITLSQSLHL--NMGGAPAGPAGTGKTETTKDLGKAIG---IMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFD 1103 (1949)
Q Consensus 1029 ~~~r~~~~l~~al~~--~~~~~~~gp~gtGKt~~~~~la~~lg---~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fd 1103 (1949)
.....+..+...... ..+..+.||+|||||++++.+++.++ ..++.++|.+..+. +...+..+ ..+...++|
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~vliiD 111 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--STALLEGL-EQFDLICID 111 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--CGGGGTTG-GGSSEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHHhc-cCCCEEEEe
Confidence 344555566555543 33445799999999999999999887 56888888775542 22233222 335678999
Q ss_pred ccccchhhH--HHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhc---ccccccc
Q psy2654 1104 EFNRISVEV--LSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALF---RPCAMVV 1178 (1949)
Q Consensus 1104 e~~~l~~~~--Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~f---r~i~~~~ 1178 (1949)
|++.++... ...+...+....+. . ...+.++.|........+.+.++..| ..+.+..
T Consensus 112 e~~~~~~~~~~~~~l~~~l~~~~~~----~--------------~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~ 173 (242)
T 3bos_A 112 DVDAVAGHPLWEEAIFDLYNRVAEQ----K--------------RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQP 173 (242)
T ss_dssp TGGGGTTCHHHHHHHHHHHHHHHHH----C--------------SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHc----C--------------CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCC
Confidence 999987654 44443333332211 0 01134444433322334446677777 6777778
Q ss_pred CchhHHHHH
Q psy2654 1179 PDFALICEI 1187 (1949)
Q Consensus 1179 pd~~~i~~~ 1187 (1949)
|+...+.++
T Consensus 174 ~~~~~~~~~ 182 (242)
T 3bos_A 174 MMDDEKLAA 182 (242)
T ss_dssp CCGGGHHHH
T ss_pred CCHHHHHHH
Confidence 887766554
No 148
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.41 E-value=0.002 Score=71.55 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=23.3
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.....|+|.|||||||+|..+.|++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 334568899999999999999999877
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.0077 Score=71.01 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=75.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhcc-CCCcccccCCCccCcccccccccCCCCCcccCh--HHHHHHHHhhcCC-CC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAK-KKPMYNDLEPKAVTNDELFGIINPSTREWKDGL--FSCLIREQAQSTG-DG 1840 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~-~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~--l~~~~r~~~~~~~-~~ 1840 (1949)
+..+++||||+|||++++.+++.+.... ..+.+..++|.. . .-|+ +-.++..+...+. ..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------~--~~~id~ir~li~~~~~~p~~~~ 82 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------E--NIGIDDIRTIKDFLNYSPELYT 82 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------S--CBCHHHHHHHHHHHTSCCSSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------C--CCCHHHHHHHHHHHhhccccCC
Confidence 5789999999999999999998642111 112222233221 0 1121 2334444333222 34
Q ss_pred CcEEEEcCCCCccchhhHHhhh---cCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccceEEEecCCCCCchhh
Q psy2654 1841 PKWMVMDGDIDPMWIESLNTVM---DDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWNPY 1917 (1949)
Q Consensus 1841 ~~Wiv~Dg~~d~~w~e~ln~~l---ddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~~v~~~~~~~~w~~~ 1917 (1949)
.+.||+|.. |..=-+..|.+| ++ .|+++.+||-+++...+-|+..|| ++.+.+-.- .-
T Consensus 83 ~kvviIdea-d~lt~~a~naLLk~LEe-------------p~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~---~~ 143 (305)
T 2gno_A 83 RKYVIVHDC-ERMTQQAANAFLKALEE-------------PPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVP---KE 143 (305)
T ss_dssp SEEEEETTG-GGBCHHHHHHTHHHHHS-------------CCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCC---HH
T ss_pred ceEEEeccH-HHhCHHHHHHHHHHHhC-------------CCCCeEEEEEECChHhChHHHHce--eEeCCCCCH---HH
Confidence 588888863 211123344443 32 357889999999999999999999 788876443 45
Q ss_pred HHhhhcc
Q psy2654 1918 VLSWTDT 1924 (1949)
Q Consensus 1918 ~~~w~~~ 1924 (1949)
+..|+..
T Consensus 144 i~~~L~~ 150 (305)
T 2gno_A 144 FRDLVKE 150 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566644
No 150
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.37 E-value=0.0028 Score=79.81 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=74.2
Q ss_pred HHHHHHHh--cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHH
Q psy2654 1755 VQLVELFA--VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1755 ~~l~~~l~--~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~ 1832 (1949)
.+++..+. ...+|+|+||||||||+++++++..+ ...+..+|...+. .+++|.. .|.+..++..
T Consensus 227 ~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn~~~l~-~~~~g~~--------~~~~~~~f~~ 292 (489)
T 3hu3_A 227 PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIM-SKLAGES--------ESNLRKAFEE 292 (489)
T ss_dssp HHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEEHHHHH-TSCTTHH--------HHHHHHHHHH
T ss_pred HHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEEchHhh-hhhcchh--------HHHHHHHHHH
Confidence 34555543 45789999999999999999998765 2223334432221 2233322 2233334443
Q ss_pred HhhcCCCCCcEEEEcCC--C-----------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhh
Q psy2654 1833 QAQSTGDGPKWMVMDGD--I-----------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATV 1899 (1949)
Q Consensus 1833 ~~~~~~~~~~Wiv~Dg~--~-----------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~v 1899 (1949)
+... ...-|+||.. + .......|-++||. +..+.++++|..|.....+.|+..
T Consensus 293 A~~~---~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~-----------~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 293 AEKN---APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-----------LKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp HHHT---CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH-----------SCTTSCEEEEEEESCGGGBCGGGG
T ss_pred HHhc---CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc-----------cccCCceEEEEecCCccccCHHHh
Confidence 3221 1246777842 0 01233344444442 123557888999988888899999
Q ss_pred c--cceE-EEecCCC
Q psy2654 1900 S--RAGI-LYINPQD 1911 (1949)
Q Consensus 1900 s--r~~~-v~~~~~~ 1911 (1949)
+ |+.. |++...+
T Consensus 359 r~gRf~~~i~i~~P~ 373 (489)
T 3hu3_A 359 RFGRFDREVDIGIPD 373 (489)
T ss_dssp STTSSCEEEECCCCC
T ss_pred CCCcCceEEEeCCCC
Confidence 8 6654 6666544
No 151
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.0059 Score=72.00 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccC--CCCCCCCCCChhHHHHHHHHHhc------ceEEEEeCCC-CCCHhhhhhhccccccc-----Cc
Q psy2654 1420 CYITLSQSLHLNMG--GAPAGPAGTGKTETTKDLGKAIG------IMVYVFNCSE-QMDYRSCGNIYKGLAQT-----GA 1485 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~--~~l~G~~g~GKt~~v~~la~~lg------~~~~~~n~~~-~~~~~~l~~~~~g~~~~-----g~ 1485 (1949)
.+..+..++..+.+ -+++||+|+|||++++.+|+.+| ..++.++.+. ......+..++..+... ..
T Consensus 5 ~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~k 84 (305)
T 2gno_A 5 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRK 84 (305)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSE
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCce
Confidence 44566777777764 33789999999999999999753 3466666653 34444444433332211 12
Q ss_pred cccccccccccchh
Q psy2654 1486 WGCFDEFNRISVEV 1499 (1949)
Q Consensus 1486 w~~~de~~~l~~~~ 1499 (1949)
.+.+||+++++.+.
T Consensus 85 vviIdead~lt~~a 98 (305)
T 2gno_A 85 YVIVHDCERMTQQA 98 (305)
T ss_dssp EEEETTGGGBCHHH
T ss_pred EEEeccHHHhCHHH
Confidence 34556666665544
No 152
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.33 E-value=0.0068 Score=72.90 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=52.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcE
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKW 1843 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~W 1843 (1949)
+.-|+|+||+||||||++++++..+....+...+..-+|-........+.+.........--+..+++.+.. ..+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~---~~Pdv 199 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR---EDPDI 199 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT---SCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh---hCcCE
Confidence 345899999999999999999988865422222211122221111111111100000001123345554432 34589
Q ss_pred EEEcCCCCccchhhHHhhhcCC
Q psy2654 1844 MVMDGDIDPMWIESLNTVMDDN 1865 (1949)
Q Consensus 1844 iv~Dg~~d~~w~e~ln~~lddn 1865 (1949)
|++|.|-|+.-++.+-.....+
T Consensus 200 illDEp~d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 200 ILVGEMRDLETIRLALTAAETG 221 (356)
T ss_dssp EEESCCCSHHHHHHHHHHHHTT
T ss_pred EecCCCCCHHHHHHHHHHHhcC
Confidence 9999999987776655544433
No 153
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.30 E-value=0.0022 Score=70.77 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|.|||||||+|..+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999877
No 154
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.29 E-value=0.0016 Score=72.35 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=51.5
Q ss_pred cchHHHHHHHHHHHhc------cCCCCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCH-------hhhhhhccc
Q psy2654 1416 LTDRCYITLSQSLHLN------MGGAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDY-------RSCGNIYKG 1479 (1949)
Q Consensus 1416 ~t~r~~~~l~~al~~~------~~~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~-------~~l~~~~~g 1479 (1949)
....++..+...+... .+.+++||+|||||++++.++..+ |.+++.++|++-.+. ..+...+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (202)
T 2w58_A 33 GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDY 112 (202)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHH
Confidence 3344566666666655 567799999999999999999988 778888888642110 001111111
Q ss_pred ccccCcccccccccccc
Q psy2654 1480 LAQTGAWGCFDEFNRIS 1496 (1949)
Q Consensus 1480 ~~~~g~w~~~de~~~l~ 1496 (1949)
......+++||++..+
T Consensus 113 -~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 113 -IKKVPVLMLDDLGAEA 128 (202)
T ss_dssp -HHHSSEEEEEEECCC-
T ss_pred -hcCCCEEEEcCCCCCc
Confidence 2233578999996543
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.26 E-value=0.013 Score=72.52 Aligned_cols=133 Identities=16% Similarity=0.254 Sum_probs=74.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC-CccCcccc-------cccccCCCCCcc-cChHHHHHHHHhhc
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP-KAVTNDEL-------FGIINPSTREWK-DGLFSCLIREQAQS 1836 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p-~~~~~~el-------~G~~~~~~~~w~-dG~l~~~~r~~~~~ 1836 (1949)
+++|+||||+||||+++.+++.+.... ...+..+|. ...+..++ +|.-.+.. ++. +.++.. +.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~-l~~~l~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRR-GLSRDEFLAL-LVEHLRE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSS-CCCHHHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCC-CCCHHHHHHH-HHHHHhh
Confidence 799999999999999999998773221 122333331 11111111 23211111 111 112222 2222211
Q ss_pred CCCCCcEEEEcCC--CCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC---CCCChhhhccce--EEEecC
Q psy2654 1837 TGDGPKWMVMDGD--IDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL---RTATPATVSRAG--ILYINP 1909 (1949)
Q Consensus 1837 ~~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l---~~asPa~vsr~~--~v~~~~ 1909 (1949)
......|++|.. +++..++.|-.+++.-. . ....++.+|+-+.+. ....|...+||+ .+.+.+
T Consensus 123 -~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~-----~----~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~p 192 (389)
T 1fnn_A 123 -RDLYMFLVLDDAFNLAPDILSTFIRLGQEAD-----K----LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSP 192 (389)
T ss_dssp -TTCCEEEEEETGGGSCHHHHHHHHHHTTCHH-----H----HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCC
T ss_pred -cCCeEEEEEECccccchHHHHHHHHHHHhCC-----C----CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCC
Confidence 233468999964 46666777766664311 0 001366788888776 678899999998 577776
Q ss_pred CC
Q psy2654 1910 QD 1911 (1949)
Q Consensus 1910 ~~ 1911 (1949)
-.
T Consensus 193 l~ 194 (389)
T 1fnn_A 193 YT 194 (389)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 156
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0029 Score=78.22 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=71.1
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhcc----CCCcccccCCCccC-cccc----c---ccccCCCCCcc-cChHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAK----KKPMYNDLEPKAVT-NDEL----F---GIINPSTREWK-DGLFSCL 1829 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~----~~~~~~~i~p~~~~-~~el----~---G~~~~~~~~w~-dG~l~~~ 1829 (1949)
..++++|+||||+|||++++.+++.+.... ....+..+|..... ..++ + |.-.+. .++. +.++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l 121 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPF-TGLSVGEVYERL 121 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCS-SCCCHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHH
Confidence 346799999999999999999998774321 12233334432221 1111 1 211111 1121 1223332
Q ss_pred HHHHhhcCCCCCcEEEEcCCC--Ccc--chhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC---CCCChhhhccc
Q psy2654 1830 IREQAQSTGDGPKWMVMDGDI--DPM--WIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL---RTATPATVSRA 1902 (1949)
Q Consensus 1830 ~r~~~~~~~~~~~Wiv~Dg~~--d~~--w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l---~~asPa~vsr~ 1902 (1949)
.... . .......|++|..= ... ..+.|..+++....+ +.+.++.+|+-+.+. ....|+..+||
T Consensus 122 ~~~l-~-~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~I~~t~~~~~~~~l~~~l~~r~ 191 (387)
T 2v1u_A 122 VKRL-S-RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL--------GDRVWVSLVGITNSLGFVENLEPRVKSSL 191 (387)
T ss_dssp HHHH-T-TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTSSSSCHHHHTTT
T ss_pred HHHH-h-ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc--------CCCceEEEEEEECCCchHhhhCHHHHhcC
Confidence 2222 1 12224578889642 211 335555555321110 115677888888776 67899999999
Q ss_pred --eEEEecCCC
Q psy2654 1903 --GILYINPQD 1911 (1949)
Q Consensus 1903 --~~v~~~~~~ 1911 (1949)
..+.+.+-.
T Consensus 192 ~~~~i~l~~l~ 202 (387)
T 2v1u_A 192 GEVELVFPPYT 202 (387)
T ss_dssp TSEECCBCCCC
T ss_pred CCeEEeeCCCC
Confidence 456666533
No 157
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.09 E-value=0.0037 Score=67.84 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..+++|+|||||||||++++++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998874
No 158
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.01 E-value=0.009 Score=71.69 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=70.4
Q ss_pred CCCCCCCCCCcchhHHHHHHhh---cceEEEeeCCccchh--hhc----cccchhhcccCccccccccccchh--hHHHH
Q psy2654 1047 GAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDY--RSC----GNIYKGLAQTGAWGCFDEFNRISV--EVLSV 1115 (1949)
Q Consensus 1047 ~~~~gp~gtGKt~~~~~la~~l---g~~~~~~~~~~~~~~--~~~----~~~~~g~~~~g~w~~fde~~~l~~--~~Ls~ 1115 (1949)
..+.||+|||||++++.+++.+ |..++.++|.+..+- ..+ ...+......+..+++||++.++. .....
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~ 119 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIE 119 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHH
Confidence 4468999999999999999999 889999999765321 011 011222223466789999999875 33333
Q ss_pred HHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhcc---ccccccCchhHHHHH
Q psy2654 1116 VAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFR---PCAMVVPDFALICEI 1187 (1949)
Q Consensus 1116 i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr---~i~~~~pd~~~i~~~ 1187 (1949)
+...+. ..... +..++++.+.....-..+++.|.+.|. .+.+.. +......+
T Consensus 120 l~~~l~----~~~~~---------------~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 120 FFHIFN----TLYLL---------------EKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKI 174 (324)
T ss_dssp HHHHHH----HHHHT---------------TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHH
T ss_pred HHHHHH----HHHHC---------------CCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHH
Confidence 332222 22111 112344444322222367888888884 344444 55555443
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.80 E-value=0.016 Score=69.59 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=66.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
..++|+||||+||||++++++..+.. .+... -|... ...+-+..++.. ......+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~~~----------sg~~~-----~~~~~l~~~~~~-----~~~~~v~ 106 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT-----NIHVT----------SGPVL-----VKQGDMAAILTS-----LERGDVL 106 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEE----------ETTTC-----CSHHHHHHHHHH-----CCTTCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEE----------echHh-----cCHHHHHHHHHH-----ccCCCEE
Confidence 57999999999999999999987721 11100 01110 011112222221 1123566
Q ss_pred EEcCC--CCccchhhHHhhhcCCcc-eeccCC---ceee-cCCCceEEEEeCCCCCCChhhhccceEE-EecCCC
Q psy2654 1845 VMDGD--IDPMWIESLNTVMDDNKV-LTLASN---ERIA-LTPSMRLLFEISNLRTATPATVSRAGIL-YINPQD 1911 (1949)
Q Consensus 1845 v~Dg~--~d~~w~e~ln~~lddn~~-l~l~~g---e~i~-~~~~~~~ifE~~~l~~asPa~vsr~~~v-~~~~~~ 1911 (1949)
++|.. +.+..-|.|-..+.+.+. +.+..+ .++. ..+.+.++..+......||+..+||+++ .+++..
T Consensus 107 ~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 107 FIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp EEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred EEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCC
Confidence 77742 334455666555544321 111112 1121 2245677778888999999999999864 577654
No 160
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.78 E-value=0.037 Score=69.46 Aligned_cols=124 Identities=13% Similarity=0.231 Sum_probs=68.5
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCC-CC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGD-GP 1841 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~-~~ 1841 (1949)
...||+|+||||||||+++++++.... ..+..++.. ++...+ -|...+-++...+.... ..
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~-----~~~~~~--------~g~~~~~v~~lfq~a~~~~p 124 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS-----DFVEMF--------VGVGAARVRDLFETAKRHAP 124 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGG-----GGTSSC--------TTHHHHHHHHHTTTSSSSSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehh-----HHHHhh--------hhhHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999997651 112222221 221111 23444555665544332 33
Q ss_pred cEEEEcCC--C-----------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCCCCChhhhccce---EE
Q psy2654 1842 KWMVMDGD--I-----------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAG---IL 1905 (1949)
Q Consensus 1842 ~Wiv~Dg~--~-----------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~~asPa~vsr~~---~v 1905 (1949)
..+++|.. + +..+-+.+|.+|.. +..++ .+..+.++.-|.....+-|+.++++. .|
T Consensus 125 ~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~-----Ldg~~---~~~~viviAatn~p~~LD~aLlr~gRfdr~i 196 (499)
T 2dhr_A 125 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-----MDGFE---KDTAIVVMAATNRPDILDPALLRPGRFDRQI 196 (499)
T ss_dssp CEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH-----GGGCC---SSCCCEEEECCSCGGGSCTTTSSTTSSCCEE
T ss_pred CEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH-----hcccc---cCccEEEEEecCChhhcCcccccccccceEE
Confidence 56777742 1 12233556666521 22222 12344455566666667888887442 56
Q ss_pred EecCCCC
Q psy2654 1906 YINPQDL 1912 (1949)
Q Consensus 1906 ~~~~~~~ 1912 (1949)
+++..++
T Consensus 197 ~i~~Pd~ 203 (499)
T 2dhr_A 197 AIDAPDV 203 (499)
T ss_dssp ECCCCCH
T ss_pred ecCCCCH
Confidence 6765543
No 161
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.024 Score=69.74 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=68.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC-CCcccccCCCc-cCcccc-------cccccCCCCCcc-cChHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK-KPMYNDLEPKA-VTNDEL-------FGIINPSTREWK-DGLFSCLIREQ 1833 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~-~~~~~~i~p~~-~~~~el-------~G~~~~~~~~w~-dG~l~~~~r~~ 1833 (1949)
.++|+|+||+|+||||+++.+++.+....+ ...+..++... .+..++ +|.-.+.. +.. ..++..+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFT-GLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSS-SCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHHHH
Confidence 467999999999999999999987744321 22222222111 111111 12111111 111 11222222222
Q ss_pred hhcCCCCCcEEEEcCCC------CccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCC---CCCChhhhccc--
Q psy2654 1834 AQSTGDGPKWMVMDGDI------DPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNL---RTATPATVSRA-- 1902 (1949)
Q Consensus 1834 ~~~~~~~~~Wiv~Dg~~------d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l---~~asPa~vsr~-- 1902 (1949)
. .......|++|..- +...+..|-..++.. -+.++.+|+-+.+. ....|+..+||
T Consensus 124 -~-~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~ 189 (386)
T 2qby_A 124 -R-DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------NKSKISFIGITNDVKFVDLLDPRVKSSLSE 189 (386)
T ss_dssp -H-TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------CC--EEEEEEESCGGGGGGCTTHHHHTTTT
T ss_pred -h-ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------CCCeEEEEEEECCCChHhhhCHHHhccCCC
Confidence 1 12235788999531 233444444444321 13456778888766 46788899999
Q ss_pred eEEEecCCC
Q psy2654 1903 GILYINPQD 1911 (1949)
Q Consensus 1903 ~~v~~~~~~ 1911 (1949)
..+.+.+-.
T Consensus 190 ~~i~l~~l~ 198 (386)
T 2qby_A 190 EEIIFPPYN 198 (386)
T ss_dssp EEEEECCCC
T ss_pred eeEEeCCCC
Confidence 577777644
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.006 Score=71.75 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHhcCCC--CCCCCCCCcchhHHHHHHhhc----------ceEEEeeCCccch
Q psy2654 1031 DRCYITLSQSLHLNMGGA--PAGPAGTGKTETTKDLGKAIG----------IMVYVFNCSEQMD 1082 (1949)
Q Consensus 1031 ~r~~~~l~~al~~~~~~~--~~gp~gtGKt~~~~~la~~lg----------~~~~~~~~~~~~~ 1082 (1949)
.+.+..+..++....++. +.||+|||||.+++.+++.++ ..++.+||....+
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 344556666666666654 479999999999999999995 3577899977544
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.46 E-value=0.018 Score=71.92 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=74.3
Q ss_pred CCCCCCCCCCcchhHHHHHHhh-----cceEEEeeCCccchh--hhccc----cchhhcc-cCccccccccccchh--hH
Q psy2654 1047 GAPAGPAGTGKTETTKDLGKAI-----GIMVYVFNCSEQMDY--RSCGN----IYKGLAQ-TGAWGCFDEFNRISV--EV 1112 (1949)
Q Consensus 1047 ~~~~gp~gtGKt~~~~~la~~l-----g~~~~~~~~~~~~~~--~~~~~----~~~g~~~-~g~w~~fde~~~l~~--~~ 1112 (1949)
..+.||+|+|||++++.++..+ |..++.++|.+...- ..+.. .+..... .+..+++||++.+.. ..
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~ 212 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGV 212 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHH
Confidence 4579999999999999999999 788888998765321 11110 1111222 566889999999875 33
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhc---cccccccCchhHHHHHh
Q psy2654 1113 LSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALF---RPCAMVVPDFALICEIM 1188 (1949)
Q Consensus 1113 Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~f---r~i~~~~pd~~~i~~~~ 1188 (1949)
...+.. .++..... +..+.+|.+.....-..+.+.|.+.| ..+.+..|+......++
T Consensus 213 q~~l~~----~l~~l~~~---------------~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 213 QTELFH----TFNELHDS---------------GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp HHHHHH----HHHHHHTT---------------TCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred HHHHHH----HHHHHHHC---------------CCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 333322 22222111 12233443332222234778888888 56777788887766553
No 164
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.41 E-value=0.017 Score=70.18 Aligned_cols=134 Identities=22% Similarity=0.307 Sum_probs=90.4
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCC---CCCcccChHHHHHHH
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPS---TREWKDGLFSCLIRE 1832 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~---~~~w~dG~l~~~~r~ 1832 (1949)
......+|++.|++|+||+.+.+.+.....+.+ . +..+|-.+++ ..+|||+-... ...++.|.+..+ +
T Consensus 148 ~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~--~-fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a--~ 222 (368)
T 3dzd_A 148 IAKSKAPVLITGESGTGKEIVARLIHRYSGRKG--A-FVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA--D 222 (368)
T ss_dssp HHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS--C-EEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT--T
T ss_pred hhccchhheEEeCCCchHHHHHHHHHHhccccC--C-cEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc--C
Confidence 334567899999999999999999887653322 2 5556555544 36789864321 224778888643 1
Q ss_pred HhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeC-CCC------CCChhhhccce
Q psy2654 1833 QAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEIS-NLR------TATPATVSRAG 1903 (1949)
Q Consensus 1833 ~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~-~l~------~asPa~vsr~~ 1903 (1949)
+ -=++|| |.+++..-..|-++|+++..-.+.++ -..+-++|+|+.|. ||. ...+....|+.
T Consensus 223 ~--------gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~ 292 (368)
T 3dzd_A 223 Q--------GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLS 292 (368)
T ss_dssp T--------SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT
T ss_pred C--------CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhC
Confidence 1 238889 67788899999999988775544443 34567899999986 332 24456778887
Q ss_pred EEEec
Q psy2654 1904 ILYIN 1908 (1949)
Q Consensus 1904 ~v~~~ 1908 (1949)
.+.+.
T Consensus 293 ~~~i~ 297 (368)
T 3dzd_A 293 VFQIY 297 (368)
T ss_dssp SEEEE
T ss_pred CeEEe
Confidence 66543
No 165
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.40 E-value=0.0064 Score=65.94 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=52.9
Q ss_pred ccchHHHHHHHHHHH-----hccCCCCCCCCCCChhHHHHHHHHHh----cceEEEEeCCCCCCHhhhhhh--------c
Q psy2654 1415 PLTDRCYITLSQSLH-----LNMGGAPAGPAGTGKTETTKDLGKAI----GIMVYVFNCSEQMDYRSCGNI--------Y 1477 (1949)
Q Consensus 1415 ~~t~r~~~~l~~al~-----~~~~~~l~G~~g~GKt~~v~~la~~l----g~~~~~~n~~~~~~~~~l~~~--------~ 1477 (1949)
+...+.+..+...+. .+.+.+++||+|||||++++.++..+ |..++.+++.+-.+. +... +
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 94 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR--LKHLMDEGKDTKF 94 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH--HHHHHHHTCCSHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHhcCchHHHH
Confidence 334444444443332 34557799999999999999999988 777777776543211 1100 1
Q ss_pred ccccccCcccccccccc--ccchhhHHHH
Q psy2654 1478 KGLAQTGAWGCFDEFNR--ISVEVLSVVA 1504 (1949)
Q Consensus 1478 ~g~~~~g~w~~~de~~~--l~~~~ls~~~ 1504 (1949)
.........+++||+.. +++.....+.
T Consensus 95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp HHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred HHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 11223457889999984 4444444333
No 166
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.17 E-value=0.016 Score=74.18 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=71.4
Q ss_pred CCCCCCCCCCcchhHHHHHHhhcceEEEeeCCccchhhhc-------------cccchhh------cccCcccccccccc
Q psy2654 1047 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSC-------------GNIYKGL------AQTGAWGCFDEFNR 1107 (1949)
Q Consensus 1047 ~~~~gp~gtGKt~~~~~la~~lg~~~~~~~~~~~~~~~~~-------------~~~~~g~------~~~g~w~~fde~~~ 1107 (1949)
..+.||+|||||++++.+|+.+|..++.++|++......+ ..++.++ ...+.-.++||++.
T Consensus 80 lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~ 159 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDG 159 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCc
Confidence 4568999999999999999999999999999886543222 2222222 13355778999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhccccccccCccccccccceeeecCCCCCCCCCCchhHhhhccccccccCchhHHHHH
Q psy2654 1108 ISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEI 1187 (1949)
Q Consensus 1108 l~~~~Ls~i~~~l~~~~~~~r~~~~rf~f~~~~i~l~~~~~~f~t~n~~~~~~~~lp~~l~~~fr~i~~~~pd~~~i~~~ 1187 (1949)
++.+....+. .+..+++ ....+ +.++.|..+ ...+++ ++.....+.+..|+...+.++
T Consensus 160 l~~~~~~~l~-~L~~~l~---~~~~~---------------iIli~~~~~--~~~l~~-l~~r~~~i~f~~~~~~~~~~~ 217 (516)
T 1sxj_A 160 MSGGDRGGVG-QLAQFCR---KTSTP---------------LILICNERN--LPKMRP-FDRVCLDIQFRRPDANSIKSR 217 (516)
T ss_dssp CCTTSTTHHH-HHHHHHH---HCSSC---------------EEEEESCTT--SSTTGG-GTTTSEEEECCCCCHHHHHHH
T ss_pred cchhhHHHHH-HHHHHHH---hcCCC---------------EEEEEcCCC--Cccchh-hHhceEEEEeCCCCHHHHHHH
Confidence 9764332221 1222221 11111 222333221 123443 555556677777887776665
Q ss_pred h
Q psy2654 1188 M 1188 (1949)
Q Consensus 1188 ~ 1188 (1949)
+
T Consensus 218 L 218 (516)
T 1sxj_A 218 L 218 (516)
T ss_dssp H
T ss_pred H
Confidence 4
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.17 E-value=0.02 Score=65.85 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=25.5
Q ss_pred HhcCcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1761 FAVRHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1761 l~~~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
+..+.-|.|+||+||||||+++.|+..+...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 3445568999999999999999999987543
No 168
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.03 E-value=0.015 Score=71.24 Aligned_cols=144 Identities=19% Similarity=0.299 Sum_probs=89.7
Q ss_pred HHHHHHHHHH-HHhcCcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccC----cccccccccCC---CCCc
Q psy2654 1750 FILKVVQLVE-LFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT----NDELFGIINPS---TREW 1821 (1949)
Q Consensus 1750 ~~~k~~~l~~-~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~----~~el~G~~~~~---~~~w 1821 (1949)
.+.++.+... ......+|++.|++|+|||++.+.+.....+. ...+..+|-.+++ ..+|||+-... ...+
T Consensus 145 ~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~ 222 (387)
T 1ny5_A 145 KMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 222 (387)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC
T ss_pred HhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc
Confidence 3344433333 33456789999999999999998887754322 2233445544443 36789864211 1235
Q ss_pred ccChHHHHHHHHhhcCCCCCcEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCC-CC------
Q psy2654 1822 KDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISN-LR------ 1892 (1949)
Q Consensus 1822 ~dG~l~~~~r~~~~~~~~~~~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~-l~------ 1892 (1949)
+.|.|..+ ..-.++|| |.+++.....|-++|++...- +.|..-..+.++|+|+.|.- |.
T Consensus 223 ~~g~~~~a----------~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l~~~~~~g 290 (387)
T 1ny5_A 223 KEGFFELA----------DGGTLFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATNRNIKELVKEG 290 (387)
T ss_dssp BCCHHHHT----------TTSEEEEESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEESSCHHHHHHTT
T ss_pred cCCceeeC----------CCcEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCCCCHHHHHHcC
Confidence 67877542 11468899 667888889999999887643 34555567788999998853 32
Q ss_pred CCChhhhccceEEEe
Q psy2654 1893 TATPATVSRAGILYI 1907 (1949)
Q Consensus 1893 ~asPa~vsr~~~v~~ 1907 (1949)
...+....|...+.+
T Consensus 291 ~fr~dl~~rl~~~~i 305 (387)
T 1ny5_A 291 KFREDLYYRLGVIEI 305 (387)
T ss_dssp SSCHHHHHHHTTEEE
T ss_pred CccHHHHHhhcCCee
Confidence 234445555544433
No 169
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.01 E-value=0.016 Score=66.99 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=46.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCCcEE
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~~Wi 1844 (1949)
.-|+|.|+|||||||+.+.|++.+...+. .+..++...+ ...+.| |++....+..++....++... .. .++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~--~~i~~~~D~~-~~~l~~-~~~~~e~~~~~~~~~~i~~~l----~~-~~v 75 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNI--DVIVLGSDLI-RESFPV-WKEKYEEFIKKSTYRLIDSAL----KN-YWV 75 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEECTHHH-HTTSSS-CCGGGHHHHHHHHHHHHHHHH----TT-SEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCC--EEEEECchHH-HHHHhh-hhHHHHHHHHHHHHHHHHHHh----hC-CEE
Confidence 46899999999999999999988643321 1111222211 123334 332211111122222233321 22 788
Q ss_pred EEcCCC-CccchhhHHhhh
Q psy2654 1845 VMDGDI-DPMWIESLNTVM 1862 (1949)
Q Consensus 1845 v~Dg~~-d~~w~e~ln~~l 1862 (1949)
|+||.. ...+.+.+..+.
T Consensus 76 IiD~~~~~~~~~~~l~~~a 94 (260)
T 3a4m_A 76 IVDDTNYYNSMRRDLINIA 94 (260)
T ss_dssp EECSCCCSHHHHHHHHHHH
T ss_pred EEeCCcccHHHHHHHHHHH
Confidence 999754 555666666554
No 170
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.88 E-value=0.021 Score=64.41 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..-|++.||+||||||+++.|++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999998854
No 171
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.85 E-value=0.015 Score=71.25 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=33.3
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCC
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM 1468 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~ 1468 (1949)
.+.+++||+|||||++++.||+.+|.+++.++|+.-.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~ 87 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhc
Confidence 4677899999999999999999999999999987643
No 172
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.76 E-value=0.04 Score=66.89 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=48.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhc-cCCCcccccCCCccCcccccccccCCCCCcccChHHHHHHHHhhcCCCCC
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNA-KKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~-~~~~~~~~i~p~~~~~~el~G~~~~~~~~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
.+..|+|+||+||||||+++.|+..+... .+...+.- .|-......-.|.+....-+-....|..+++.+... .+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e-~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~---~p 210 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE---DP 210 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS---CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec-ccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhh---Cc
Confidence 34568999999999999999999987543 22221111 121111111112111100000112345566655432 45
Q ss_pred cEEEEcCCCCccchh
Q psy2654 1842 KWMVMDGDIDPMWIE 1856 (1949)
Q Consensus 1842 ~Wiv~Dg~~d~~w~e 1856 (1949)
..|++|.+-|+.-++
T Consensus 211 d~illdE~~d~e~~~ 225 (372)
T 2ewv_A 211 DVIFVGEMRDLETVE 225 (372)
T ss_dssp SEEEESCCCSHHHHH
T ss_pred CEEEECCCCCHHHHH
Confidence 789999998876443
No 173
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.57 E-value=0.014 Score=67.85 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.9
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
....||+|+|||||||||+++++|...
T Consensus 42 ~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 345789999999999999999999865
No 174
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.44 E-value=0.019 Score=67.90 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=46.1
Q ss_pred HHHHHHHHHHh-----ccCCCCCCCCCCChhHHHHHHHHHhc----ceEEEEeCCCCCC-------Hhhhhhhccccccc
Q psy2654 1420 CYITLSQSLHL-----NMGGAPAGPAGTGKTETTKDLGKAIG----IMVYVFNCSEQMD-------YRSCGNIYKGLAQT 1483 (1949)
Q Consensus 1420 ~~~~l~~al~~-----~~~~~l~G~~g~GKt~~v~~la~~lg----~~~~~~n~~~~~~-------~~~l~~~~~g~~~~ 1483 (1949)
.+..+...+.. ..+.+++||+|||||.+++++|..+. .++..+++++-++ ...+.+.+.. ...
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~ 214 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA-VKN 214 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH-HHT
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH-hcC
Confidence 44444444444 45677999999999999999998766 7888888753111 1111222222 233
Q ss_pred Cccccccccccc
Q psy2654 1484 GAWGCFDEFNRI 1495 (1949)
Q Consensus 1484 g~w~~~de~~~l 1495 (1949)
...+++||+...
T Consensus 215 ~~lLiiDdig~~ 226 (308)
T 2qgz_A 215 VPVLILDDIGAE 226 (308)
T ss_dssp SSEEEEETCCC-
T ss_pred CCEEEEcCCCCC
Confidence 457899999544
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.36 E-value=0.12 Score=53.56 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=43.6
Q ss_pred CCCCCCCCCCcchhHHHHHHhh---cceEEEeeCCccchhhhccccchhhcccCccccccccccchhhH
Q psy2654 1047 GAPAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEV 1112 (1949)
Q Consensus 1047 ~~~~gp~gtGKt~~~~~la~~l---g~~~~~~~~~~~~~~~~~~~~~~g~~~~g~w~~fde~~~l~~~~ 1112 (1949)
-.+.||+|+|||++++.++..+ |..++.+++.+..+.. ......-.++||+..++...
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD--------AAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG--------GGGGCSEEEEESTTCCCSHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH--------HHhCCCEEEEeCccccChHH
Confidence 4468999999999999999988 7777777776654431 12234567999999987655
No 176
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.30 E-value=0.019 Score=61.93 Aligned_cols=24 Identities=42% Similarity=0.718 Sum_probs=21.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
++|+|+||+|+||||+++.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 689999999999999999987654
No 177
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.25 E-value=0.046 Score=62.85 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=23.3
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|++|+|||||||||++++++...
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999765
No 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.24 E-value=0.028 Score=68.15 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCC
Q psy2654 1419 RCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQ 1467 (1949)
Q Consensus 1419 r~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~ 1467 (1949)
+-+..+..++..+...+++||+|+|||++++++++..| ++.++|...
T Consensus 19 ~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~ 65 (350)
T 2qen_A 19 EESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCREL 65 (350)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecc
Confidence 44566666776665667999999999999999999987 777888643
No 179
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.06 E-value=0.04 Score=60.78 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=23.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
.+|+|+||||+|||++++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999987753
No 180
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.06 E-value=0.021 Score=68.12 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.6
Q ss_pred HHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1759 ELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1759 ~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-.+..+..+.|+||+||||||++++|+..+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345567789999999999999999999765
No 181
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.98 E-value=0.028 Score=69.92 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCCC--CCCCCCChhHHHHHHHHHh---------cceEEEEeCCCCCCH
Q psy2654 1433 GGAP--AGPAGTGKTETTKDLGKAI---------GIMVYVFNCSEQMDY 1470 (1949)
Q Consensus 1433 ~~~l--~G~~g~GKt~~v~~la~~l---------g~~~~~~n~~~~~~~ 1470 (1949)
..++ +||+|+|||++++.+++.+ +.+++.++|.+..+.
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 3557 9999999999999999887 557888999765443
No 182
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.95 E-value=0.027 Score=60.95 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+..+.|+||+||||||+++.|+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999865
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.93 E-value=0.026 Score=62.11 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||+++.|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999999866
No 184
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.93 E-value=0.043 Score=61.70 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=53.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCcccccccc---cCCCCCc---ccChHHHHHHHHh---
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGII---NPSTREW---KDGLFSCLIREQA--- 1834 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~---~~~~~~w---~dG~l~~~~r~~~--- 1834 (1949)
..-|++.|++||||||.++.|++.+...+-......=.|......+.+-.+ ++...+| ...++-.+-|-..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~ 106 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVEN 106 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999998865433312222245443333332211 1111122 2232222222111
Q ss_pred --hcCCCCCcEEEEc----------C---CCCccchhhHHhhh
Q psy2654 1835 --QSTGDGPKWMVMD----------G---DIDPMWIESLNTVM 1862 (1949)
Q Consensus 1835 --~~~~~~~~Wiv~D----------g---~~d~~w~e~ln~~l 1862 (1949)
.......+|+|+| | .+|..|++.||...
T Consensus 107 ~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~ 149 (236)
T 3lv8_A 107 VIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTA 149 (236)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHH
Confidence 1011234899999 2 35778999888753
No 185
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.82 E-value=0.025 Score=60.66 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|.|+||+||||||+.+.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999999865
No 186
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.77 E-value=0.061 Score=61.60 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|.|||||||||+.+.||+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999999999876
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.73 E-value=0.066 Score=62.47 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=23.2
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...||+|+|||||||||++++++...
T Consensus 72 ~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcChHHHHHHHHHHHc
Confidence 45689999999999999999999765
No 188
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.68 E-value=0.044 Score=66.59 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC
Q psy2654 1420 CYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE 1466 (1949)
Q Consensus 1420 ~~~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~ 1466 (1949)
-+..+.. +.. ..++++||+|+|||++++.+++.++..++.++|..
T Consensus 21 el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 21 EIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp HHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 3444444 444 35568899999999999999999988888899864
No 189
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.62 E-value=0.033 Score=59.86 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-+.|+||+||||||+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 190
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.56 E-value=0.034 Score=59.50 Aligned_cols=23 Identities=26% Similarity=0.096 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|.|+|||||||+.+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 191
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.53 E-value=0.038 Score=60.85 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=23.4
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.....|+|+|||||||||+.+.|++.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999999876
No 192
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=93.46 E-value=0.028 Score=68.33 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=79.1
Q ss_pred EEEEEecCCCChhHHHHHH-HHHHHhccCCCccc-ccCCCccCccccccc-ccCCCC-CcccChHHHHHHHHhhcCCCCC
Q psy2654 1766 SVFIIGFAGTGKSCVWKTL-YKTYVNAKKKPMYN-DLEPKAVTNDELFGI-INPSTR-EWKDGLFSCLIREQAQSTGDGP 1841 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~L-a~~~~~~~~~~~~~-~i~p~~~~~~el~G~-~~~~~~-~w~dG~l~~~~r~~~~~~~~~~ 1841 (1949)
.|+|+|+||+ ||++.+.+ ++...+. .+. ...+. ...|.|. .++ ++ ..+.|.+..+ ++
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~----~ft~g~~ss---~~gLt~s~r~~-tG~~~~~G~l~LA--dg-------- 301 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRG----VYVDLRRTE---LTDLTAVLKED-RGWALRAGAAVLA--DG-------- 301 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSE----EEEEGGGCC---HHHHSEEEEES-SSEEEEECHHHHT--TT--------
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCe----EEecCCCCC---ccCceEEEEcC-CCcccCCCeeEEc--CC--------
Confidence 7999999999 99999999 7644111 111 01111 1123322 223 33 2357877643 11
Q ss_pred cEEEEc--CCCCccchhhHHhhhcCCcceeccCCceeecCCCceEEEEeCCCC-----------CCChhhhccceEEEec
Q psy2654 1842 KWMVMD--GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLR-----------TATPATVSRAGILYIN 1908 (1949)
Q Consensus 1842 ~Wiv~D--g~~d~~w~e~ln~~lddn~~l~l~~ge~i~~~~~~~~ifE~~~l~-----------~asPa~vsr~~~v~~~ 1908 (1949)
--+.+| +..++.....|..+|.+..+ ++. |. .+|..+++|-.+.-.. ..+++.++|+.|+++-
T Consensus 302 Gvl~lDEIn~~~~~~qsaLlEaMEe~~V-tI~-G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~ 377 (506)
T 3f8t_A 302 GILAVDHLEGAPEPHRWALMEAMDKGTV-TVD-GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFL 377 (506)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHHSEE-EET-TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEET
T ss_pred CeeehHhhhhCCHHHHHHHHHHHhCCcE-EEC-CE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEe
Confidence 447778 55688889999999987665 666 65 8888887776665443 7999999999888753
No 193
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.34 E-value=0.035 Score=59.78 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|.|+|||||||+.+.|++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999999865
No 194
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.28 E-value=0.043 Score=59.55 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|+|+|||||||||+.+.||+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 195
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.27 E-value=0.059 Score=59.03 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=24.4
Q ss_pred HhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1761 FAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1761 l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+....-|+|.|+|||||||+.+.|++.+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445679999999999999999999876
No 196
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.26 E-value=0.057 Score=59.95 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-.-|.|||||||||..+.|++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999877
No 197
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.23 E-value=0.036 Score=60.51 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.7
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
....+.|+||+||||||+.+.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999864
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.22 E-value=0.077 Score=61.63 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeC
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNC 1464 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~ 1464 (1949)
.+++||+|+|||+++.++|...|.++..+..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4688999999999999999988877665555
No 199
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.21 E-value=0.041 Score=61.29 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=23.6
Q ss_pred HHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1758 VELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1758 ~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+.-+.....+.|+||+||||||+++.|+...
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3445566789999999999999999999865
No 200
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.13 E-value=0.076 Score=66.70 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.++++|+||||||||++.+++|+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 36899999999999999999999873
No 201
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.02 E-value=0.042 Score=59.29 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.2
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|.|+|||||||+.+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999997
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.96 E-value=0.049 Score=59.13 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+..|+|+||+||||||+++.|++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4679999999999999999999754
No 203
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.92 E-value=0.044 Score=59.58 Aligned_cols=24 Identities=42% Similarity=0.718 Sum_probs=21.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+.+.|+||+||||||+++.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999866
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.89 E-value=0.047 Score=60.31 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.5
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
....+.|+||+||||||+++.|+...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999999764
No 205
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.88 E-value=0.051 Score=59.35 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-|+|.|+|||||||+.+.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999876
No 206
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.86 E-value=0.054 Score=64.03 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
.-|+|.|+|||||||+.+.|++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999974
No 207
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.84 E-value=0.049 Score=60.27 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=54.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCccCccccccccc--CC---CCCc---ccChHHHHHHHHhh-
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIIN--PS---TREW---KDGLFSCLIREQAQ- 1835 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~~~~el~G~~~--~~---~~~w---~dG~l~~~~r~~~~- 1835 (1949)
.-|.+.|++||||||.++.|++.+...+.......-.|......+..-.+- +. ..++ .+.+|-.+-|.-.-
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~ 83 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE 83 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHH
Confidence 458899999999999999999988654321222223455433323221111 01 1122 23333333332111
Q ss_pred ----cCCCCCcEEEEc----------C---CCCccchhhHHhhh
Q psy2654 1836 ----STGDGPKWMVMD----------G---DIDPMWIESLNTVM 1862 (1949)
Q Consensus 1836 ----~~~~~~~Wiv~D----------g---~~d~~w~e~ln~~l 1862 (1949)
......+|||+| | .++..|++.+|...
T Consensus 84 ~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~ 127 (213)
T 4tmk_A 84 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV 127 (213)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHh
Confidence 011234899999 3 35778999998754
No 208
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.77 E-value=0.055 Score=59.05 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.6
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
-|+|.|+|||||||+.+.|++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999998853
No 209
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.76 E-value=0.052 Score=59.77 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
...|.|+||+||||||+.+.|+..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999885
No 210
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.76 E-value=0.054 Score=59.04 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.-|+|.|+|||||||+.+.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 211
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.76 E-value=0.052 Score=59.78 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|.|+||+||||||+.+.|+..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4569999999999999999999876
No 212
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.74 E-value=0.05 Score=60.45 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
.-|.+.|++||||||+++.|++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34788899999999999999998865
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.72 E-value=0.057 Score=61.69 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|.|+||+||||||+++.|++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999766
No 214
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.69 E-value=0.053 Score=59.78 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|++||||||+.+.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999876
No 215
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.65 E-value=0.071 Score=57.66 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCCCCCCCChhHHHHHHHHHh---cceEEEEeCCCCCCH------------------hhhhhhcccccccCccccccccc
Q psy2654 1435 APAGPAGTGKTETTKDLGKAI---GIMVYVFNCSEQMDY------------------RSCGNIYKGLAQTGAWGCFDEFN 1493 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~l---g~~~~~~n~~~~~~~------------------~~l~~~~~g~~~~g~w~~~de~~ 1493 (1949)
+++||+|+|||+++..++..+ |+.++++...-...+ .....++.-+......+.+||++
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE~Q 86 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQ 86 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECCGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEECcc
Confidence 478999999999987676553 778877754321110 01112222122234678999999
Q ss_pred cccchhhHHH
Q psy2654 1494 RISVEVLSVV 1503 (1949)
Q Consensus 1494 ~l~~~~ls~~ 1503 (1949)
.++++.+..+
T Consensus 87 ~~~~~~~~~l 96 (184)
T 2orw_A 87 FFNPSLFEVV 96 (184)
T ss_dssp GSCTTHHHHH
T ss_pred cCCHHHHHHH
Confidence 9987766544
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.63 E-value=0.046 Score=60.44 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.2
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.....|+|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344579999999999999999999865
No 217
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.61 E-value=0.045 Score=67.20 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=23.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.++|+|+||||||||++.+.||+.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999876
No 218
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.61 E-value=0.057 Score=57.96 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=21.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|.|+|||||||+.+.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 219
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.52 E-value=0.06 Score=58.41 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|.|+|||||||+.+.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999866
No 220
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.46 E-value=0.06 Score=59.66 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|+|+||+||||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999755
No 221
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.45 E-value=0.059 Score=58.13 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|+|.|+|||||||+.+.|++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999999876
No 222
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.40 E-value=0.07 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|.|+||+||||||+.+.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999866
No 223
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.39 E-value=0.062 Score=59.59 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..-|.|+||+||||||+.+.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999885
No 224
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.35 E-value=0.058 Score=58.74 Aligned_cols=22 Identities=41% Similarity=0.433 Sum_probs=19.9
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
..+.|+||+||||||+.+.|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999986
No 225
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.31 E-value=0.059 Score=60.20 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=23.0
Q ss_pred HhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1761 FAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1761 l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+.....+.|+||+||||||+++.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445679999999999999999999855
No 226
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.30 E-value=0.055 Score=59.57 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
=|.+.|+.||||||.++.|++.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 377889999999999999999884
No 227
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.25 E-value=0.067 Score=59.24 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=23.2
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.+.....+.|+||+||||||++++|+..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34456679999999999999999999865
No 228
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.20 E-value=0.17 Score=61.26 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1758 VELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1758 ~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-.+..+..+.|+||+||||||++++|+..+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3355667789999999999999999999765
No 229
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.18 E-value=0.22 Score=57.49 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=25.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE 1466 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~ 1466 (1949)
.++.||||+|||+++..||+.+|-. +++++.
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~--iis~Ds 43 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVE--LISVDS 43 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEE--EEECCT
T ss_pred EEEECCCccCHHHHHHHHHHhCCCc--EEeccc
Confidence 4578999999999999999999854 566655
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.13 E-value=0.068 Score=59.12 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|.|+||+||||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999998755
No 231
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.10 E-value=0.075 Score=59.76 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-|.|+||+||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999866
No 232
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.04 E-value=0.1 Score=57.12 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.8
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
....-|+|.|+|||||||+.+.|++.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999999876
No 233
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.93 E-value=0.1 Score=54.98 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
..+.++|++||||||++..|+..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 468899999999999999999987544
No 234
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.92 E-value=0.086 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||.||||||+++.++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999999987
No 235
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.89 E-value=0.076 Score=59.22 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=20.6
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|.|||||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.87 E-value=0.26 Score=60.87 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=26.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPM 1796 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~ 1796 (1949)
..++|+||+||||||+++.|+..+...++.+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 46899999999999999999988754444443
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.84 E-value=0.12 Score=60.88 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=24.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..+++|+||||+|||++.++++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999875
No 238
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.81 E-value=0.066 Score=57.35 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.4
Q ss_pred cEEEEEecCCCChhHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTL 1784 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~L 1784 (1949)
.-|+|.|||||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 239
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.81 E-value=0.081 Score=59.31 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|||||||||+.+.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999877
No 240
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.76 E-value=0.082 Score=56.49 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.5
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|.|+|||||||+.+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 241
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.74 E-value=0.44 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.7
Q ss_pred EEEEecCCCChhHHHHHHHHHHHhcc
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTYVNAK 1792 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~~~~~ 1792 (1949)
|.+.|+-||||||.++.|++.+...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 67889999999999999999886543
No 242
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.73 E-value=0.082 Score=60.99 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..++|+||+||||||++++|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999876
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.73 E-value=0.055 Score=59.53 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=26.7
Q ss_pred HHhccCCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1428 LHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1428 l~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
+..+....+.||+|+||||+++.||+.+|.+++
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 334445668999999999999999999998875
No 244
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.71 E-value=0.084 Score=57.13 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|.|+|||||||+.+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 245
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.70 E-value=0.083 Score=58.13 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|.|+|||||||+.+.|++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 246
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.65 E-value=0.093 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+.|+|.|++||||||+.+.|++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 247
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.64 E-value=0.084 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|.|.|++||||||+.+.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999977
No 248
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.63 E-value=0.19 Score=64.65 Aligned_cols=29 Identities=28% Similarity=0.215 Sum_probs=25.0
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
.+..++|.|||||||||++..++..+...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999877544
No 249
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.63 E-value=0.086 Score=57.60 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 250
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.62 E-value=0.085 Score=58.57 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.-|+|.|+|||||||+.+.|++.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999874
No 251
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.61 E-value=0.11 Score=60.74 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.+..+..+.|+||+||||||+++.|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44556789999999999999999999987
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.57 E-value=0.085 Score=57.12 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=21.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
..|+|.|+|||||||+.+.|++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999986
No 253
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.53 E-value=0.1 Score=61.25 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP 1795 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~ 1795 (1949)
...|.|+||+||||||+++.|+..+...++.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V 133 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV 133 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 35789999999999999999999886544443
No 254
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.51 E-value=0.089 Score=58.88 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999876
No 255
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.43 E-value=0.13 Score=56.67 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.4
Q ss_pred HhcCcEEEEEecCCCChhHHHHHHHHHHHhccCC
Q psy2654 1761 FAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK 1794 (1949)
Q Consensus 1761 l~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~~ 1794 (1949)
+.....+.|+||+||||||++++++.. ....+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 355677999999999999999999987 443343
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.40 E-value=0.11 Score=55.31 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
-..+.++|++||||||+++.|+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 356899999999999999999987743
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.31 E-value=0.077 Score=56.74 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.8
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.-..+.||+|+||||+.+.||..+|.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34568899999999999999999997543
No 258
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.30 E-value=0.12 Score=60.56 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=25.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKK 1794 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~ 1794 (1949)
...++|+||+||||||+++.||..+...++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~ 130 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 130 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe
Confidence 4578999999999999999999987544443
No 259
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.30 E-value=0.079 Score=59.09 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|+|.|||||||||+.+.|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 260
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.26 E-value=0.1 Score=56.89 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 261
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.25 E-value=0.16 Score=60.67 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPK 1803 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~ 1803 (1949)
..-|.|+|||||||||+++.|+..+...++...+...+|.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 4568999999999999999999887544444444444443
No 262
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.25 E-value=0.086 Score=61.53 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=21.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|.|||||||||+.+.|++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.25 E-value=0.079 Score=56.95 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeC
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNC 1464 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~ 1464 (1949)
.++.|++|+||||+.+.||+.+|.+++.+..
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 4588999999999999999999988776553
No 264
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.24 E-value=0.14 Score=61.71 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.+..+..+.|+|||||||||+++.|+...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34456789999999999999999999865
No 265
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.23 E-value=0.16 Score=57.60 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-|+|.|||||||||+.+.|++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999866
No 266
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.23 E-value=0.39 Score=57.43 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=25.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP 1795 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~ 1795 (1949)
...++|+||+||||||+++.||..+...++.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 34689999999999999999999875444433
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.22 E-value=0.1 Score=57.92 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|.|+||+||||||+.+.|+..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999877
No 268
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.20 E-value=0.1 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|+|.|+|||||||+.+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.19 E-value=0.083 Score=56.44 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=17.7
Q ss_pred CcEEEEEecCCCChhHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKT 1783 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~ 1783 (1949)
..-+.|+||+||||||+++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34689999999999999995
No 270
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.14 E-value=0.11 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
..-|+|.|++||||||+.+.|+..+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3468999999999999999999988543
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.10 E-value=0.087 Score=59.29 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999865
No 272
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.04 E-value=0.11 Score=57.86 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|.|+|||||||+.+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999876
No 273
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.01 E-value=0.12 Score=60.66 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|+||||||||++...||+.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 368999999999999999999866
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.92 E-value=0.11 Score=56.26 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.+.|+||+||||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999875
No 275
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.91 E-value=0.11 Score=57.54 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..-|+|.|++||||||+.+.|++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999998743
No 276
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.87 E-value=0.12 Score=57.79 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999877
No 277
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.87 E-value=0.08 Score=57.21 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=17.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999865
No 278
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.86 E-value=0.11 Score=58.18 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-|+|.|+|||||||+.+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 279
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=90.84 E-value=3.2 Score=45.82 Aligned_cols=162 Identities=10% Similarity=0.132 Sum_probs=114.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccccc-eec--c--ee---eecchhHHHHHHHHHHHHHHHHH----------H-HHHH
Q psy2654 77 PNNDAFRQKIDQYEALYKTVNEIEESK-VFD--E--WL---LVDLKPFKYSLLNVVCKWSMLFK----------K-HLMD 137 (1949)
Q Consensus 77 p~l~~f~~~i~~y~~l~~~i~~~~~~~-~~~--g--~l---~ld~~pLk~~L~~~~~~w~~~~~----------~-~L~~ 137 (1949)
.++...+..+.++..+..+|....+.. .+. | ++ .-+...++..+......|..... . ....
T Consensus 33 ~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~l~ 112 (216)
T 1u5p_A 33 KDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLH 112 (216)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888876543321 000 0 00 12344444444444444444332 2 2233
Q ss_pred HHHHHHHHHHHHHHHHhcccCccCCcCCHHHHHHHHHHHHHHhccccchhhcchhHHHHHHHHHHcCCCCCHHHHHHHhh
Q psy2654 138 SVINSLNELKDFIEEADKGLATPLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQLLKLYDIEFPEETYLMLQE 217 (1949)
Q Consensus 138 ~~~~~l~~l~~~i~~~~~~L~~~~~p~~le~l~~~m~~l~~i~~~~~~~e~~~~~i~e~~~lL~~y~v~v~~e~~~~~~~ 217 (1949)
.+...++++...|......+..+..+.|++.....+.....+..+....+..+..+.+...-|-..+..-++....+++.
T Consensus 113 qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~ 192 (216)
T 1u5p_A 113 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQ 192 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45566777788888777767665556889999999999988888888888888899988888877887778888899999
Q ss_pred hHHHHHHHHHHHHhhhhhcch
Q psy2654 218 LPDRWANTKKIATSVKTAAQP 238 (1949)
Q Consensus 218 l~~~w~~l~~~~~~~~~~l~~ 238 (1949)
+...|..+...+...+..|+.
T Consensus 193 l~~~W~~L~~~~~~R~~~L~~ 213 (216)
T 1u5p_A 193 FVDHWKELKQLAAARGQRLEE 213 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877764
No 280
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.80 E-value=0.13 Score=61.00 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=27.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMY 1797 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~ 1797 (1949)
...++|+||+||||||+++.|+..+...++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999988655444433
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.76 E-value=0.083 Score=58.11 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.4
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.-..+.||+|+||||+++.|+..+|..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 33558899999999999999999987543
No 282
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.74 E-value=0.13 Score=57.18 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..-|+|.|++||||||+.+.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999998753
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.74 E-value=0.86 Score=57.06 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=26.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCccc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYN 1798 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~ 1798 (1949)
..|+++|+||+||||++..||..+...+.++.+.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3689999999999999999998886544443333
No 284
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.73 E-value=0.12 Score=56.57 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
-|.|.|++||||||+.+.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998744
No 285
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.70 E-value=0.19 Score=55.28 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.9
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..|.|.|++||||||+.+.|+..+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45899999999999999999987743
No 286
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.66 E-value=0.14 Score=58.08 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=23.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|.|+|++||||||+.+.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999876
No 287
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.64 E-value=0.21 Score=57.86 Aligned_cols=31 Identities=32% Similarity=0.343 Sum_probs=25.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE 1466 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~ 1466 (1949)
.++.||||+|||+++..||+.+|- .++||+.
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~--~iis~Ds 36 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNG--EVISGDS 36 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTE--EEEECCG
T ss_pred EEEECCCcCCHHHHHHHHHHhCcc--ceeecCc
Confidence 347899999999999999999974 5566654
No 288
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.50 E-value=0.14 Score=64.74 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
+..++..+..++|+||+||||||++++|+..+
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33455667789999999999999999998765
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.50 E-value=0.098 Score=56.64 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..++.||+|+||||+++.||+.+|.+++
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3568899999999999999999998876
No 290
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.47 E-value=0.13 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
-|.|.|++||||||+.+.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999774
No 291
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.43 E-value=0.12 Score=56.94 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-|+|.|++||||||+.+.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999865
No 292
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=90.39 E-value=1.3 Score=43.58 Aligned_cols=106 Identities=12% Similarity=0.072 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCc-cCCcCCHHHHHHHHHHHHHHhccccchhhcchhHHHHHHHHHHcCCCCCH---HHH
Q psy2654 137 DSVINSLNELKDFIEEADKGLAT-PLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQLLKLYDIEFPE---ETY 212 (1949)
Q Consensus 137 ~~~~~~l~~l~~~i~~~~~~L~~-~~~p~~le~l~~~m~~l~~i~~~~~~~e~~~~~i~e~~~lL~~y~v~v~~---e~~ 212 (1949)
..+...++++...|......|.. .+.+.|++.+...+.....+..........+..+.+...-|-.-+-.-++ ...
T Consensus 5 ~~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~ 84 (118)
T 3uul_A 5 DSYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQ 84 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 34567788888999888777754 33378999999999998888888888888888888877666544333333 255
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhcchhHHH
Q psy2654 213 LMLQELPDRWANTKKIATSVKTAAQPLIAA 242 (1949)
Q Consensus 213 ~~~~~l~~~w~~l~~~~~~~~~~l~~~~~~ 242 (1949)
.+++.+..+|+.+...+.+.+..|......
T Consensus 85 ~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~ 114 (118)
T 3uul_A 85 EQMTLLNARWEALRVESMERQSRLHDALME 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999887777655433
No 293
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.33 E-value=0.13 Score=56.80 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~ 1786 (1949)
-|.|.|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 488999999999999999997
No 294
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.16 E-value=0.14 Score=57.83 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|+|||||||+.+.|++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999877
No 295
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.14 E-value=0.11 Score=58.75 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4568999999999999999998754
No 296
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.12 E-value=0.12 Score=56.98 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|+|.|++||||||+.+.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999765
No 297
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.07 E-value=0.098 Score=59.95 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|+|+|||||||+.+.|+..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999866
No 298
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.06 E-value=0.089 Score=58.51 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred EEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
-|.|+|++||||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998853
No 299
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.97 E-value=0.25 Score=57.22 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|+||||||||++...||+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 468899999999999999999866
No 300
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.96 E-value=0.17 Score=56.54 Aligned_cols=25 Identities=40% Similarity=0.408 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|.|.|||||||||+.+.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999866
No 301
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.95 E-value=0.15 Score=54.72 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
...|.|.|++||||||+.+.|+..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999998773
No 302
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.93 E-value=0.099 Score=55.58 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=23.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..|.|+|++||||||+++.|+..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35889999999999999999998853
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.92 E-value=0.23 Score=60.93 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
..|+|+||+||||||++++++..+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34799999999999999999987743
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.92 E-value=0.12 Score=55.21 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.||+|+||||+++.||+.+|.+++
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 357899999999999999999997764
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.84 E-value=0.13 Score=56.69 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.|.|.||+||||||+.+.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 306
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.74 E-value=0.12 Score=57.83 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998754
No 307
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.68 E-value=0.19 Score=58.91 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=26.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPM 1796 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~ 1796 (1949)
...++++||+||||||++..||..+...++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 356899999999999999999998865444443
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.66 E-value=0.15 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..+|+|.||||+|||++...|++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999988643
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.63 E-value=0.1 Score=58.91 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=16.0
Q ss_pred CcEEEEEecCCCChhHHHHHHH-HHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLY-KTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La-~~~ 1788 (1949)
...+.|+||+||||||+++.|+ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3468999999999999999999 765
No 310
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.49 E-value=0.15 Score=58.41 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...|.|+||+||||||+.+.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999999654
No 311
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.41 E-value=0.66 Score=60.23 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.3
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
.+..+++.|||||||||++..+...+..
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998887754
No 312
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.40 E-value=0.15 Score=57.54 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..+.|+||+||||||++++++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999765
No 313
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.39 E-value=0.28 Score=54.38 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.2
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
....-|+|.|++||||||+.+.|+..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445689999999999999999999875
No 314
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.37 E-value=0.12 Score=56.52 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHhccCCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1427 SLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1427 al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.+....-..+.|++|+||||+++.||+.+|.+++
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3444455668999999999999999999996654
No 315
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.33 E-value=0.29 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..|+|+|++||||||+.+.||+.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4599999999999999999998764
No 316
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.33 E-value=0.13 Score=57.99 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998765
No 317
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.29 E-value=0.22 Score=54.25 Aligned_cols=63 Identities=17% Similarity=0.067 Sum_probs=41.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHH--------hc-ceEEEEeCCCC-CCH--------------------hhhhhhcccccc
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKA--------IG-IMVYVFNCSEQ-MDY--------------------RSCGNIYKGLAQ 1482 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~--------lg-~~~~~~n~~~~-~~~--------------------~~l~~~~~g~~~ 1482 (1949)
-.++.|++|+|||..+..++.. .| +++++.||..- .+. ..+..++.-...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 3468899999999998776433 46 99999998742 111 111111110123
Q ss_pred cCccccccccccc
Q psy2654 1483 TGAWGCFDEFNRI 1495 (1949)
Q Consensus 1483 ~g~w~~~de~~~l 1495 (1949)
.|+.+++||++.+
T Consensus 87 ~~~vliIDEAq~l 99 (199)
T 2r2a_A 87 IGSIVIVDEAQDV 99 (199)
T ss_dssp TTCEEEETTGGGT
T ss_pred CceEEEEEChhhh
Confidence 4899999999988
No 318
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.28 E-value=0.15 Score=54.58 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
-..+.||+|+||||+.+.||+.+|.+++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 3568899999999999999999998765
No 319
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.25 E-value=0.11 Score=58.42 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=25.4
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.-..+.|++|+||||+++.||+.+|.+++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 44668899999999999999999998765
No 320
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.24 E-value=0.49 Score=56.83 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=25.5
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEEEEeCCC
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVYVFNCSE 1466 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~ 1466 (1949)
.+.||+|+|||+++..||+.+|.. +++++.
T Consensus 6 ~i~GptgsGKttla~~La~~~~~~--iis~Ds 35 (409)
T 3eph_A 6 VIAGTTGVGKSQLSIQLAQKFNGE--VINSDS 35 (409)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTEE--EEECCT
T ss_pred EEECcchhhHHHHHHHHHHHCCCe--EeecCc
Confidence 478999999999999999999854 567655
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.20 E-value=0.17 Score=57.00 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=22.5
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...-+.|+||+||||||+++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999754
No 322
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.14 E-value=0.19 Score=57.12 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHHHHh---ccCCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1420 CYITLSQSLHL---NMGGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1420 ~~~~l~~al~~---~~~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.+..+...+.. +....+.|++|+||||+.+.||..+|.+++
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 44555555555 667779999999999999999999998765
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.08 E-value=0.16 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-|.|+|++||||||+.+.|++.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999998754
No 324
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.05 E-value=0.48 Score=58.04 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=27.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYND 1799 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~ 1799 (1949)
..|+++|++|+||||++..||..+...+.++.+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56899999999999999999998866544443333
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.01 E-value=0.21 Score=58.92 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
...|-|+||+||||||+++.|+..+..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 446889999999999999999998754
No 326
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.97 E-value=0.16 Score=57.92 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.3
Q ss_pred cCcEEEEEecCCCChhHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
....+.|+||+||||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456799999999999999999984
No 327
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.94 E-value=0.26 Score=57.65 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHh-ccCCCcccccCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVN-AKKKPMYNDLEP 1802 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~-~~~~~~~~~i~p 1802 (1949)
...|+++||+|+||||++..||..+.. .+.++.+...++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 457999999999999999999998864 333444443444
No 328
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.92 E-value=0.2 Score=56.49 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=23.4
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
....++|+||+||||||+++.++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999976543
No 329
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.85 E-value=0.16 Score=54.15 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 458899999999999999999998765
No 330
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.85 E-value=0.17 Score=59.18 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=22.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|+|||||||||+.+.||+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999876
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.81 E-value=0.14 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
-..+.|++|+||||+++.||+.+|.+++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3568899999999999999999997654
No 332
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.79 E-value=0.14 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998754
No 333
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.67 E-value=0.15 Score=58.71 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 334
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.66 E-value=0.16 Score=58.36 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998754
No 335
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.66 E-value=0.2 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|.|+|++||||||+++.++.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999999886
No 336
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.63 E-value=0.34 Score=58.07 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKA 1804 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~ 1804 (1949)
...|.++|+||+||||+++.|+..+...+++..+...+|.+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 45688999999999999999998886555544444445543
No 337
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.59 E-value=0.25 Score=53.36 Aligned_cols=29 Identities=14% Similarity=0.246 Sum_probs=22.2
Q ss_pred CcEEEEcC--CCCccchhhHHhhhcCCccee
Q psy2654 1841 PKWMVMDG--DIDPMWIESLNTVMDDNKVLT 1869 (1949)
Q Consensus 1841 ~~Wiv~Dg--~~d~~w~e~ln~~lddn~~l~ 1869 (1949)
...|++|. -+++.|++.|+.+.|.+..+.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi 107 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGIDVF 107 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCCCEE
Confidence 46899995 357789999999998765443
No 338
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.58 E-value=0.21 Score=55.66 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
+.-|.|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999986
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.49 E-value=0.17 Score=54.72 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=24.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+.+.||+.+|.+++
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 458899999999999999999998765
No 340
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.44 E-value=0.16 Score=58.10 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998765
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.44 E-value=0.21 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.219 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
..-|.|.|++||||||+.+.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999974
No 342
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.42 E-value=0.17 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999999765
No 343
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.40 E-value=0.25 Score=59.39 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=28.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCc
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKA 1804 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~ 1804 (1949)
.-|.|+|+||+||||+++.|+......+++..+....|.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3589999999999999999998775444444444445543
No 344
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.35 E-value=0.18 Score=54.18 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..++.|++|+|||++++.||+.+|.+++
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 3568899999999999999999998775
No 345
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.34 E-value=0.39 Score=58.51 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCc-EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1750 FILKVVQLVELFAVRH-SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1750 ~~~k~~~l~~~l~~~~-~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...++.+..+...... -|.|+||+|+||||++++|+...
T Consensus 54 ~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 54 TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445555555555454 56899999999999999998643
No 346
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.31 E-value=0.17 Score=57.52 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998765
No 347
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.29 E-value=0.21 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.++|+||+||||||++++++.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998766
No 348
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.29 E-value=0.2 Score=53.24 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+.+.||+.+|.+++
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 458899999999999999999998876
No 349
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.28 E-value=0.17 Score=57.90 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3568899999999999999998755
No 350
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.28 E-value=0.2 Score=59.75 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..+.|+||+||||||++++++...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 458899999999999999999754
No 351
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.24 E-value=0.2 Score=57.66 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
...+.|+||+||||||++++++..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999985
No 352
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.23 E-value=0.26 Score=61.85 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=55.7
Q ss_pred ccccchHHHHHHHHHHHhcc-CCCCCCCCCCChhHHHHHHHHHh---cc-eEEEEeCCC----------CCCHhhhhhhc
Q psy2654 1413 ITPLTDRCYITLSQSLHLNM-GGAPAGPAGTGKTETTKDLGKAI---GI-MVYVFNCSE----------QMDYRSCGNIY 1477 (1949)
Q Consensus 1413 ~t~~t~r~~~~l~~al~~~~-~~~l~G~~g~GKt~~v~~la~~l---g~-~~~~~n~~~----------~~~~~~l~~~~ 1477 (1949)
+||.=.+.+..+..++..+. ..++.||+|||||+++..++..+ |. .++.+..+. +.....+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~ 105 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSIL 105 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHh
Confidence 34444566666777777666 45588999999999999999887 33 344432221 11111222222
Q ss_pred c---c--------------ccccCccccccccccccchhhHHH
Q psy2654 1478 K---G--------------LAQTGAWGCFDEFNRISVEVLSVV 1503 (1949)
Q Consensus 1478 ~---g--------------~~~~g~w~~~de~~~l~~~~ls~~ 1503 (1949)
. + ......++++||+..++...+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l 148 (459)
T 3upu_A 106 KINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKIL 148 (459)
T ss_dssp TEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHH
T ss_pred ccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHH
Confidence 1 0 112357889999999987766544
No 353
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.22 E-value=0.17 Score=57.21 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998764
No 354
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.22 E-value=0.25 Score=56.18 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.7
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...-|-|.||+||||||+.+.|+..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999999876
No 355
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.21 E-value=0.18 Score=57.89 Aligned_cols=25 Identities=36% Similarity=0.693 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4568999999999999999998765
No 356
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.18 E-value=0.17 Score=58.10 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+-|+||+||||||++++++...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3568899999999999999998754
No 357
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.17 E-value=0.2 Score=57.07 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
...+.|+||+||||||++++|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999985
No 358
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.05 E-value=0.22 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|.|+|++|+||||+++.++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999999985
No 359
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.05 E-value=0.18 Score=57.48 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+...
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 360
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.03 E-value=0.18 Score=56.57 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998765
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.99 E-value=0.19 Score=54.80 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=24.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
-..+.|++|+||||+++.||+.+|.+++
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3558899999999999999999998754
No 362
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.90 E-value=0.19 Score=58.00 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998765
No 363
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.89 E-value=0.57 Score=58.78 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHHHHhcCc-EEEEEecCCCChhHHHHHHHHHHHhcc
Q psy2654 1755 VQLVELFAVRH-SVFIIGFAGTGKSCVWKTLYKTYVNAK 1792 (1949)
Q Consensus 1755 ~~l~~~l~~~~-~vll~G~~gsGKTt~~~~La~~~~~~~ 1792 (1949)
..+...+..+. .++|.|+||||||+++..+++.+...+
T Consensus 35 ~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 35 NIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp HHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 33434444444 899999999999999999998885543
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.84 E-value=0.2 Score=58.99 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCC
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSE 1466 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~ 1466 (1949)
-..+.||+|+|||++++.||..+| +.+++++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~--~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN--GEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT--EEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC--Cceecccc
Confidence 356889999999999999999999 56677665
No 365
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.77 E-value=0.19 Score=57.04 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++..+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999998765
No 366
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.74 E-value=0.34 Score=54.63 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.7
Q ss_pred HHHHHhcCcEEEEEecCCCChhHHHHHHH
Q psy2654 1757 LVELFAVRHSVFIIGFAGTGKSCVWKTLY 1785 (1949)
Q Consensus 1757 l~~~l~~~~~vll~G~~gsGKTt~~~~La 1785 (1949)
+...+..++.+++.|||||||||++....
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 34455567889999999999999776554
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.65 E-value=0.26 Score=53.53 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.|.|.|++||||||+.+.|++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999864
No 368
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.58 E-value=0.34 Score=56.85 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLY 1785 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La 1785 (1949)
...+.|+||+|+||||++++|+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999998
No 369
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.52 E-value=0.29 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.8
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|+|+||||||||++...||+.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 468999999999999999999876
No 370
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.52 E-value=0.27 Score=57.22 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.0
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
.-|.|+||+||||||+.+.|+..+..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45889999999999999999998854
No 371
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.47 E-value=0.23 Score=59.27 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3568899999999999999999754
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.46 E-value=0.21 Score=57.02 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.++.||+|+||||+++.||+.+|.+++
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i 30 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVV 30 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEE
Confidence 357899999999999999999997654
No 373
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.45 E-value=0.2 Score=57.91 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++|+...
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999998765
No 374
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.42 E-value=0.34 Score=57.19 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=30.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP 1802 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p 1802 (1949)
...|+++||+|+||||++..||..+...++++.+...++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 457899999999999999999998876555544443333
No 375
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.40 E-value=0.24 Score=59.58 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-+-|+||+||||||++++++...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3458899999999999999999765
No 376
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.40 E-value=0.21 Score=56.99 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999998765
No 377
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.33 E-value=0.25 Score=55.07 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=37.4
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCCCCCCHhhhhhh
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNI 1476 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~~~~~~~~l~~~ 1476 (1949)
.+.-.++.||+|+|||++++.+|..-|.+++.+++.++.+...+.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHH
Confidence 33445688999999999999999977899999998886666555443
No 378
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.30 E-value=0.21 Score=57.41 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999998754
No 379
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.27 E-value=0.29 Score=59.91 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=27.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMY 1797 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~ 1797 (1949)
...|+++||+||||||++..||..+...+.++.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3568999999999999999999988665544433
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.23 E-value=0.24 Score=59.25 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3458899999999999999999765
No 381
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.22 E-value=0.25 Score=59.18 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3458899999999999999999764
No 382
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.20 E-value=0.26 Score=59.42 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=32.2
Q ss_pred HHHHHHHHhccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCC
Q psy2654 1422 ITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCS 1465 (1949)
Q Consensus 1422 ~~l~~al~~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~ 1465 (1949)
..+...+..+...++.||+|+||||+++.||..++-.++..+..
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~ 203 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP 203 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSC
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEecc
Confidence 33333444455567999999999999999999998776654433
No 383
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.19 E-value=0.23 Score=53.94 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=21.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHhc
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIG 1456 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg 1456 (1949)
..+.||+|+||||+++.||+.+|
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999
No 384
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.11 E-value=0.27 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.5
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|.|+|++|+||||+++.|+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999874
No 385
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.09 E-value=0.26 Score=58.14 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.5
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..|+|.|||||||||+.+.||..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4789999999999999999998763
No 386
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=87.00 E-value=5 Score=44.11 Aligned_cols=163 Identities=11% Similarity=0.049 Sum_probs=111.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhccccc-e---ecc-eee----ecchhHHHHHHHHHHHHHHHHHHH-----------H
Q psy2654 76 PPNNDAFRQKIDQYEALYKTVNEIEESK-V---FDE-WLL----VDLKPFKYSLLNVVCKWSMLFKKH-----------L 135 (1949)
Q Consensus 76 ~p~l~~f~~~i~~y~~l~~~i~~~~~~~-~---~~g-~l~----ld~~pLk~~L~~~~~~w~~~~~~~-----------L 135 (1949)
+.++...+..+.+.+.+..+|....+.. . .|. .+. -++..++..+......|....... -
T Consensus 29 ~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~ 108 (214)
T 1s35_A 29 PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG 108 (214)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888887776533221 1 110 001 123445556666666665443311 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCccCCcCCHHHHHHHHHHHHHHhccccchhhcchhHHHHHHHHHHcCCCCCHHHHHHH
Q psy2654 136 MDSVINSLNELKDFIEEADKGLATPLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQLLKLYDIEFPEETYLML 215 (1949)
Q Consensus 136 ~~~~~~~l~~l~~~i~~~~~~L~~~~~p~~le~l~~~m~~l~~i~~~~~~~e~~~~~i~e~~~lL~~y~v~v~~e~~~~~ 215 (1949)
...+...++.+...|......|.....+.++++....+.....+.......+..+..+.+.-.-|-.-+-+-++....++
T Consensus 109 l~~F~~~~~~~~~Wl~~~E~~l~~~~~g~~~~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~~ 188 (214)
T 1s35_A 109 FQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKV 188 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23445666777777777777776554478999998888888888888888888888888888877666666677788899
Q ss_pred hhhHHHHHHHHHHHHhhhhhcch
Q psy2654 216 QELPDRWANTKKIATSVKTAAQP 238 (1949)
Q Consensus 216 ~~l~~~w~~l~~~~~~~~~~l~~ 238 (1949)
..+..+|..+...+.+....|..
T Consensus 189 ~~l~~rw~~l~~~~~~R~~~L~~ 211 (214)
T 1s35_A 189 QLIEDRHRKNNEKAQEASVLLRD 211 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776653
No 387
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.95 E-value=0.24 Score=54.47 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.++.|++|+||||+++.|++.+|.+++
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 458899999999999999999996654
No 388
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.92 E-value=0.55 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.193 Sum_probs=21.8
Q ss_pred EEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
-|-|.||+||||||+++.|+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999998774
No 389
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.86 E-value=0.3 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 390
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.85 E-value=0.28 Score=52.40 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.||+|+||||+++.|+..+|.+++
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 458899999999999999999996654
No 391
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.85 E-value=0.21 Score=54.32 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.++.|++|+||||+++.|++.+|.+++
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i 34 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLL 34 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 458899999999999999999997754
No 392
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.85 E-value=0.24 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999765
No 393
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.81 E-value=0.27 Score=59.19 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3468899999999999999999754
No 394
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.79 E-value=0.3 Score=50.99 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~ 1786 (1949)
-|+++|++|+||||+++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999875
No 395
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.79 E-value=0.25 Score=52.64 Aligned_cols=27 Identities=41% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYV 1461 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~ 1461 (1949)
..+.||+|+||||+++.| +.+|.+++.
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 357899999999999999 999988664
No 396
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.73 E-value=0.35 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
-.+|+||+||||||++.++.-++
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998766
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.70 E-value=0.24 Score=53.88 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 458899999999999999999997654
No 398
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.68 E-value=0.5 Score=55.73 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
...|-|+||+||||||+++.|+..+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999998774
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.67 E-value=0.33 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEEEecCCCChhHHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
|.|.|++||||||+.+.|++.+
T Consensus 5 i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
No 400
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.67 E-value=0.25 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCCCCCCCChhHHHHHHHHH-hcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKA-IGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~-lg~~~~ 1460 (1949)
..+.|++|+||||+.+.||+. +|.+++
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 458899999999999999999 797765
No 401
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.65 E-value=0.32 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~ 1786 (1949)
-|+++|++|+||||+++.|..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 402
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.63 E-value=0.12 Score=56.39 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=27.1
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHhcceEEEEeC
Q psy2654 1432 MGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNC 1464 (1949)
Q Consensus 1432 ~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~ 1464 (1949)
.-..+.||+|+||||+++.||..++...+.++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 335588999999999999999988877666653
No 403
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.61 E-value=0.27 Score=59.22 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3468899999999999999999754
No 404
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.56 E-value=0.26 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 347899999999999999999998754
No 405
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.56 E-value=0.25 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|+|++|+||||+++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.38 E-value=0.4 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.+||++.|++|+||||+.-.|..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999888876
No 407
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.35 E-value=0.33 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999988875
No 408
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.30 E-value=0.33 Score=59.15 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=19.6
Q ss_pred EEEEecCCCChhHHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~~ 1787 (1949)
+.|+||+||||||++++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999864
No 409
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.29 E-value=0.3 Score=59.14 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-+.|+||+||||||++++++...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4569999999999999999999754
No 410
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.27 E-value=0.3 Score=51.75 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 357899999999999999999997765
No 411
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.23 E-value=0.3 Score=55.75 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
.-|.|.|++||||||+.+.|++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999876
No 412
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.23 E-value=0.19 Score=56.31 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=23.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMV 1459 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~ 1459 (1949)
..++.||+|+||||.++.||+.+|.+.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 355889999999999999999999654
No 413
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.21 E-value=0.29 Score=53.71 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 357899999999999999999998654
No 414
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=86.21 E-value=3.4 Score=40.40 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCc-cCCcCCHHHHHHHHHHHHHHhccccchhhcchhHHHHHHHHHHcCCCCC---HHHHH
Q psy2654 138 SVINSLNELKDFIEEADKGLAT-PLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQLLKLYDIEFP---EETYL 213 (1949)
Q Consensus 138 ~~~~~l~~l~~~i~~~~~~L~~-~~~p~~le~l~~~m~~l~~i~~~~~~~e~~~~~i~e~~~lL~~y~v~v~---~e~~~ 213 (1949)
.+...++++...|......|.. .+.+.+++.+...+.....+..........+..+.+...-|-.-+-.-+ .....
T Consensus 6 ~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~ 85 (119)
T 3uun_A 6 RYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQE 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566788888888887777753 3336899999999999988888888888888888887766643332222 24566
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhcchhH
Q psy2654 214 MLQELPDRWANTKKIATSVKTAAQPLI 240 (1949)
Q Consensus 214 ~~~~l~~~w~~l~~~~~~~~~~l~~~~ 240 (1949)
+++.+..+|+.+...+.+.+..|....
T Consensus 86 ~l~~l~~rw~~L~~~~~~R~~~Le~aL 112 (119)
T 3uun_A 86 QMNLLNSRWECLRVASMEKQSNLHRVL 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988877766554
No 415
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.19 E-value=0.39 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
..-+.|+||+||||||++++|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 56789999999999999999885
No 416
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.15 E-value=0.22 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=20.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999999876
No 417
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=86.12 E-value=14 Score=43.29 Aligned_cols=164 Identities=10% Similarity=0.113 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccccce-ecc----e---eeecchhHHHHHHHHHHHHHHHHH----------HHH-HH
Q psy2654 77 PNNDAFRQKIDQYEALYKTVNEIEESKV-FDE----W---LLVDLKPFKYSLLNVVCKWSMLFK----------KHL-MD 137 (1949)
Q Consensus 77 p~l~~f~~~i~~y~~l~~~i~~~~~~~~-~~g----~---l~ld~~pLk~~L~~~~~~w~~~~~----------~~L-~~ 137 (1949)
.++....+.+.++..+..+|........ +.. + =..+...++..+......|..... ..+ ..
T Consensus 33 ~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~l~ 112 (322)
T 1u4q_A 33 KDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLH 112 (322)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888776543321 000 0 023556666666666666765433 111 22
Q ss_pred HHHHHHHHHHHHHHHHhcccCccCCcCCHHHHHHHHHHHHHHhccccchhhcchhHHHHHHHHHHcCCCCCHHHHHHHhh
Q psy2654 138 SVINSLNELKDFIEEADKGLATPLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQLLKLYDIEFPEETYLMLQE 217 (1949)
Q Consensus 138 ~~~~~l~~l~~~i~~~~~~L~~~~~p~~le~l~~~m~~l~~i~~~~~~~e~~~~~i~e~~~lL~~y~v~v~~e~~~~~~~ 217 (1949)
.+...+.++...+......+..+..+.|++.+...+.....+..+....+..+..+.+...-|-..+.+-++....+++.
T Consensus 113 ~f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~ 192 (322)
T 1u4q_A 113 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQ 192 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456677777888777777665556789998888888888888888878888888888888877777777888889999
Q ss_pred hHHHHHHHHHHHHhhhhhcchhH
Q psy2654 218 LPDRWANTKKIATSVKTAAQPLI 240 (1949)
Q Consensus 218 l~~~w~~l~~~~~~~~~~l~~~~ 240 (1949)
+...|..+...+...+..|....
T Consensus 193 L~~~w~~L~~~~~~R~~~L~~~~ 215 (322)
T 1u4q_A 193 FVDHWKELKQLAAARGQRLEESL 215 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877776543
No 418
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.96 E-value=0.5 Score=56.89 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
+..|+|+||+|+||||+++.+++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 578999999999999999998864
No 419
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.96 E-value=0.36 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.740 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~ 1786 (1949)
-|+++|++|+||||+++.|..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999874
No 420
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.95 E-value=0.22 Score=59.30 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3468899999999999999999754
No 421
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.93 E-value=0.35 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|+|+||+||||+++.|+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999874
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.92 E-value=0.35 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.92 E-value=0.35 Score=53.85 Aligned_cols=24 Identities=13% Similarity=-0.067 Sum_probs=21.5
Q ss_pred cCcEEEEEecCCCChhHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
....++|+|||||||||++..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 424
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.91 E-value=0.29 Score=56.92 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-+.|+||+||||||++++|+..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458999999999999999998765
No 425
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.91 E-value=0.41 Score=54.00 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=30.4
Q ss_pred hccCCCCCCCCCCChhHHHHHHHHHhcceEEEEeCC
Q psy2654 1430 LNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCS 1465 (1949)
Q Consensus 1430 ~~~~~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~~ 1465 (1949)
....++++||+|+|||.++..++..+|.+++++...
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 334588999999999999999999999888888654
No 426
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.88 E-value=0.38 Score=59.32 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=29.1
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEP 1802 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p 1802 (1949)
..|+++|++|+||||++..||..+...+.++.+...+|
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 46899999999999999999998865555554444443
No 427
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.83 E-value=0.2 Score=58.60 Aligned_cols=25 Identities=28% Similarity=0.679 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-|-|+||+||||||++++|+..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4569999999999999999998765
No 428
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.79 E-value=0.42 Score=56.61 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1752 LKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1752 ~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
.+++.+.-.+...+-+.|+||+|+||||+++.+++..++.
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4566666677778899999999999999999999877543
No 429
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.76 E-value=0.36 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999874
No 430
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.73 E-value=0.37 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.4
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998874
No 431
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.71 E-value=0.37 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999875
No 432
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=85.68 E-value=0.37 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.55 E-value=0.43 Score=52.71 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=24.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
..-|.+.|++||||||.++.|++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3468899999999999999999988543
No 434
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.55 E-value=0.38 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999998874
No 435
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.51 E-value=0.38 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 436
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.48 E-value=0.62 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
..-|+++|++|+||||+++.|..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999874
No 437
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.47 E-value=0.37 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.4
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|+|++|+||||+++.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999998864
No 438
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=85.43 E-value=0.41 Score=52.42 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=24.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHh---cceEEEEe
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAI---GIMVYVFN 1463 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n 1463 (1949)
..+.||+|+||||+.+.||..+ |..++.++
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4488999999999999999999 66555554
No 439
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.43 E-value=0.34 Score=54.04 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.++.|++|+||||.++.||+.+|.+++
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i 33 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHL 33 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 457899999999999999999997654
No 440
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.38 E-value=0.35 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+-|+||+||||||++++++...
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3458999999999999999998754
No 441
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.34 E-value=0.38 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999998874
No 442
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.34 E-value=0.3 Score=53.08 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 458899999999999999999997654
No 443
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.29 E-value=0.44 Score=51.12 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=26.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHh---cceEEEEe
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAI---GIMVYVFN 1463 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~l---g~~~~~~n 1463 (1949)
..+.|++|+||||+.+.|+..+ |.+++.++
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3478999999999999999998 98888765
No 444
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.29 E-value=0.37 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=18.2
Q ss_pred EEEEEecCCCChhHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLY 1785 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La 1785 (1949)
-|+++|++|+||||+++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999885
No 445
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.24 E-value=0.42 Score=56.07 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.9
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
....-++|+||||+||||+++.++......
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 345679999999999999999999877543
No 446
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.16 E-value=0.44 Score=59.22 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=25.4
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHhccC
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKK 1793 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~~~~ 1793 (1949)
....-|.|+||+||||||++++|+.......+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 34556999999999999999999987643333
No 447
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.15 E-value=0.33 Score=53.92 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.+.||+|+||||+++.||+.+|.+++
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 47899999999999999999997765
No 448
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.13 E-value=0.41 Score=51.19 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 449
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.12 E-value=0.31 Score=59.20 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..-+.|+||+||||||+++.|+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999876
No 450
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=85.05 E-value=0.46 Score=62.51 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1760 LFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1760 ~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
++..+...+|.||||||||+++-.+...+
T Consensus 201 al~~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 201 ALSQKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHCSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhcCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34455678999999999998776665544
No 451
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.05 E-value=0.56 Score=54.76 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=29.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE 1801 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~ 1801 (1949)
...++++|++|+||||++..||..+...++++.+...+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45688999999999999999999886655544444344
No 452
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.03 E-value=0.4 Score=50.60 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEEecCCCChhHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLY 1785 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La 1785 (1949)
-|+++|++|+||||+++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999986
No 453
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.02 E-value=0.3 Score=52.32 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.8
Q ss_pred CCCCCCCCCChhHHHHHHHH-HhcceE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGK-AIGIMV 1459 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~-~lg~~~ 1459 (1949)
.++.|++|+||||+++.|++ .+|.++
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 45789999999999999999 566543
No 454
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.01 E-value=0.39 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|+|++|+||||+++.|+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999874
No 455
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.00 E-value=0.33 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.+.||+|+||||+++.||+.+|.+++
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 57899999999999999999997765
No 456
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.95 E-value=0.43 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999875
No 457
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.91 E-value=0.39 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=0.0
Q ss_pred HhcCcEEEEEecCCCChhHHHHHHHH
Q psy2654 1761 FAVRHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1761 l~~~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
+.....+.|+|||||||||++..++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
No 458
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.89 E-value=0.38 Score=56.47 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
..-|+|+||+|+||||+++.|+..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 346799999999999999998753
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.87 E-value=0.45 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.3
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
..|+|.|||||||||+...||+.++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 3588999999999999999998873
No 460
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.82 E-value=0.43 Score=56.90 Aligned_cols=23 Identities=26% Similarity=0.396 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
...+.|+||+|+||||++++|+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHhc
Confidence 56799999999999999999984
No 461
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.80 E-value=0.33 Score=56.52 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=25.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEEeC
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVFNC 1464 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~n~ 1464 (1949)
.++.||+|+||||+++.|+..++...+.+++
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4578999999999999999998655566665
No 462
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=84.76 E-value=0.44 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 463
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.75 E-value=0.4 Score=55.66 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.9
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|.|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999994
No 464
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.67 E-value=0.49 Score=54.96 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKT 1787 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~ 1787 (1949)
+..++|+||||||||++...++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456899999999999999998875
No 465
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.63 E-value=0.43 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999875
No 466
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=84.61 E-value=0.47 Score=57.24 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.7
Q ss_pred cEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCC
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPK 1803 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~ 1803 (1949)
.-|.|+|+||+||||++..|+..+...+.++.+...+|.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 468999999999999999999988655444444444543
No 467
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.60 E-value=0.44 Score=60.52 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.7
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHHh
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYVN 1790 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~~ 1790 (1949)
.....|.|+|++||||||+.+.|+..+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34556899999999999999999998853
No 468
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.59 E-value=0.45 Score=51.81 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.0
Q ss_pred CCCCCCCCChhHHHHHHHHHh---cceEEEEe
Q psy2654 1435 APAGPAGTGKTETTKDLGKAI---GIMVYVFN 1463 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~l---g~~~~~~n 1463 (1949)
.+.|++|+||||.++.|++.+ |.+++...
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 478999999999999999999 99987554
No 469
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=84.53 E-value=0.42 Score=53.51 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.||+|+||||+++.|++.+|.+++
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 458899999999999999999997654
No 470
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.48 E-value=0.43 Score=53.13 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhc
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~ 1791 (1949)
..-|++.|++||||||.++.|++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3458999999999999999999988543
No 471
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.47 E-value=0.47 Score=50.54 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999998874
No 472
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.47 E-value=0.24 Score=59.29 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
...+.|+||+||||||++++++...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999999754
No 473
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.40 E-value=0.45 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|+|++|+||||+++.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4599999999999999999874
No 474
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.38 E-value=0.79 Score=50.96 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhcCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1748 DSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1748 ~~~~~k~~~l~~~l~~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
......+..++.. ....-|+++|++|+||||++..|+...
T Consensus 15 ~~~~~~~~~~~~~-~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 15 KRLAEKNREALRE-SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHH-HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344444444332 233568999999999999999998765
No 475
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.36 E-value=0.51 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
..-|+++|++|+||||+++.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998874
No 476
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.35 E-value=0.47 Score=49.73 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=18.5
Q ss_pred EEEEecCCCChhHHHHHHHH
Q psy2654 1767 VFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1767 vll~G~~gsGKTt~~~~La~ 1786 (1949)
|+++|++|+||||+++.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999875
No 477
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.31 E-value=0.44 Score=51.02 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCCCCCCCChhHHHHHHHHHhcceEEEEeC
Q psy2654 1435 APAGPAGTGKTETTKDLGKAIGIMVYVFNC 1464 (1949)
Q Consensus 1435 ~l~G~~g~GKt~~v~~la~~lg~~~~~~n~ 1464 (1949)
.+.||+|+||||+++.++..++..+.-+.+
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~ 33 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWT 33 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHGGGEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcCCCEEh
Confidence 578999999999999999999865544443
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.28 E-value=0.5 Score=53.29 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.6
Q ss_pred cEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
..|.|.|++||||||+.+.|+..+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999865
No 479
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.25 E-value=0.43 Score=55.90 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEEEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVYVF 1462 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~~~ 1462 (1949)
.++.||+|+|||++++.||+.+|..++..
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 56889999999999999999999554433
No 480
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.25 E-value=0.51 Score=56.30 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=24.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKK 1793 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~ 1793 (1949)
...++|+|||||||||+...++......++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg 90 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGG 90 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 456899999999999999999887654433
No 481
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.25 E-value=2.8 Score=46.38 Aligned_cols=98 Identities=18% Similarity=0.077 Sum_probs=47.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccCCCcc--C---cccccccccCCCCCcccChHHHHHHHHhhc-C
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAV--T---NDELFGIINPSTREWKDGLFSCLIREQAQS-T 1837 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~p~~~--~---~~el~G~~~~~~~~w~dG~l~~~~r~~~~~-~ 1837 (1949)
..-+++.||+|+||||++--++..+...+.+. ..+.|.-- . ...-+|--.+ .... .-...++...... .
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kV--li~~~~~d~r~~~~i~srlG~~~~-~~~~--~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKY--LVFKPKIDTRSIRNIQSRTGTSLP-SVEV--ESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCE--EEEEECCCGGGCSSCCCCCCCSSC-CEEE--SSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEE--EEEEeccCchHHHHHHHhcCCCcc-cccc--CCHHHHHHHHHHHhh
Confidence 44578889999999997665555443322222 22222111 0 0111221000 0001 1112333333221 1
Q ss_pred CCCCcEEEEcCC--CCccchhhHHhhhcCCc
Q psy2654 1838 GDGPKWMVMDGD--IDPMWIESLNTVMDDNK 1866 (1949)
Q Consensus 1838 ~~~~~Wiv~Dg~--~d~~w~e~ln~~lddn~ 1866 (1949)
.....-|++|.. ++...+|.+..+.+.+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi 117 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAENGF 117 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHhCCC
Confidence 223478999954 56778888877766544
No 482
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.19 E-value=0.47 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999874
No 483
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.19 E-value=0.48 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
..-|+++|++|+||||+++.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999999864
No 484
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.11 E-value=0.64 Score=54.30 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=28.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHHHHHhccCCCcccccC
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLE 1801 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~~~~~~~~~~~~~~i~ 1801 (1949)
...+.++|++|+||||+...||..+...++.+.+...+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45788899999999999999999886555544443333
No 485
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=84.11 E-value=0.49 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 486
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.09 E-value=0.47 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|+|++|+||||+++.|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 487
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.07 E-value=0.37 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.++.|++|+||||.++.||+.+|.+++
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 457899999999999999999997765
No 488
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.05 E-value=0.44 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.|++|+||||+++.||+.+|.+++
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 457899999999999999999997654
No 489
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.99 E-value=0.54 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=20.7
Q ss_pred cCcEEEEEecCCCChhHHHHHHHHHH
Q psy2654 1763 VRHSVFIIGFAGTGKSCVWKTLYKTY 1788 (1949)
Q Consensus 1763 ~~~~vll~G~~gsGKTt~~~~La~~~ 1788 (1949)
....++|.||||+||||+...++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999976665544
No 490
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.97 E-value=0.42 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.||+|+||||.++.|++.+|.+++
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 458899999999999999999997765
No 491
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.96 E-value=0.43 Score=53.33 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
.++.|++|+||||.++.||+.+|.+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 357899999999999999999997554
No 492
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.95 E-value=0.36 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.||+|+||||+.+.||. +|.+++
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 34789999999999999998 887764
No 493
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.94 E-value=0.48 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+|+|++|+||||+++.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3599999999999999998875
No 494
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.94 E-value=0.46 Score=54.22 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1434 GAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1434 ~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
..+.||+|+||||+++.||+.||.+++
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 458899999999999999999998765
No 495
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.93 E-value=0.51 Score=54.79 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=23.9
Q ss_pred hcCcEEEEEecCCCChhHHHHHHHHHHH
Q psy2654 1762 AVRHSVFIIGFAGTGKSCVWKTLYKTYV 1789 (1949)
Q Consensus 1762 ~~~~~vll~G~~gsGKTt~~~~La~~~~ 1789 (1949)
.....++|+||+||||||+...++....
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456799999999999999999987654
No 496
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.91 E-value=0.29 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
..-|.|+|++|+||||+++.|+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999998864
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.84 E-value=0.49 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHHH
Q psy2654 1766 SVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1766 ~vll~G~~gsGKTt~~~~La~ 1786 (1949)
-|+++|++|+||||+++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999998874
No 498
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=83.83 E-value=0.48 Score=50.47 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.5
Q ss_pred cEEEEEecCCCChhHHHHHHHH
Q psy2654 1765 HSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1765 ~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
.-|+++|++|+||||+++.|..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999874
No 499
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=83.83 E-value=0.47 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHH
Q psy2654 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786 (1949)
Q Consensus 1764 ~~~vll~G~~gsGKTt~~~~La~ 1786 (1949)
..-|+++|++|+||||+++.|..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999864
No 500
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.80 E-value=0.48 Score=51.34 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCCCCCCCCChhHHHHHHHHHhcceEE
Q psy2654 1433 GGAPAGPAGTGKTETTKDLGKAIGIMVY 1460 (1949)
Q Consensus 1433 ~~~l~G~~g~GKt~~v~~la~~lg~~~~ 1460 (1949)
-..+.|++|+||||+.+.||+.+|.+++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 3458899999999999999999997765
Done!