RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2654
(1949 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 860 bits (2223), Expect = 0.0
Identities = 185/726 (25%), Positives = 305/726 (42%), Gaps = 96/726 (13%)
Query: 1235 AGSLKNWLNNVTDSMRRTGIHCMSLAVAAYDEKPR-EQWLFDYPGQTALCGTQIWWTTEV 1293
+ + WLN + ++ + + + E + Y Q L Q+ WT V
Sbjct: 457 SIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELV 516
Query: 1294 SICFARLEEGYENALKDYNKK--QFIIGFAGTGKSCVWKTLYKTYVN-----AKKKPMYN 1346
C N Y K+ I G + K +
Sbjct: 517 EKCLQ------TNQFSKYWKEVDMKIKGLLDKLNKSS-DNVKKKIEALLVEYLHFNNVIG 569
Query: 1347 DLEPKAVTNDELFGIINPSTREW-KDGRYSDSGFLSY-----GSLLGDCFANICDAEFKF 1400
L+ + + W K ++ Y L F + ++
Sbjct: 570 QLKNCSTKEEARL--------LWAKVQKF-------YQKNDTLDDLNSVFISQSGYLLQY 614
Query: 1401 DHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVY 1460
EY+G RL+ TPL + TL+ SLH GG GPAGTGKTET K G+ +G +V
Sbjct: 615 KFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVV 674
Query: 1461 VFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSR 1520
VFNC + DY+ + G+ Q GAWGCF
Sbjct: 675 VFNCDDSFDYQVLSRLLVGITQIGAWGCF------------------------------- 703
Query: 1521 FNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENI 1580
DEFNR+ +VLS V+ ++ + + +++ KS + E
Sbjct: 704 ---------------------DEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEET 742
Query: 1581 KLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLS 1640
L +FIT+NPGY GR+ELPENLK FR +M P I E++L GF++++ L+
Sbjct: 743 PLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLA 802
Query: 1641 RKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIP 1700
K + L S +HY +GLR +K VL L ++ ++ +L+ +P
Sbjct: 803 SKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLIS--EFGEGEKTVVESLKRVILP 860
Query: 1701 KIITEDLQVFMGLIGDLFPALDVPRKRDIDFEKQVRQATIDMKLQPEDSFILKVVQLVEL 1760
+ D VF + +F + P + ++ A + F+ K +Q +
Sbjct: 861 SLGDTDELVFKDELSKIFDSAGTPLNSK-AIVQCLKDAGQRSGFSMSEEFLKKCMQFYYM 919
Query: 1761 FAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP-MYNDLEPKAVTNDELFGIINPSTR 1819
+ ++ ++G AG GK+ WKT+ + ++ K +T + L+G + +T
Sbjct: 920 QKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATL 979
Query: 1820 EWKDGLFSCLIREQAQST----GDGPKWMVMDGDIDPMWIESLNTVMDDNKVLTLASNER 1875
EW+DGLF+ ++R + W+V D D+DP ++E++N+V+DDNK+LTL + ER
Sbjct: 980 EWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGER 1039
Query: 1876 IALTPSMRLLFEISNLRTATPATVSRAGILYINPQDLGWNPYVLSWTDTRESESEKNILM 1935
+ + P+ R+LFE NL TPAT++R G+L+ + + + + + + M
Sbjct: 1040 LPIPPNFRILFETDNLDHTTPATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSM 1099
Query: 1936 GLFDKL 1941
DKL
Sbjct: 1100 FELDKL 1105
Score = 539 bits (1389), Expect = e-157
Identities = 103/314 (32%), Positives = 161/314 (51%), Gaps = 5/314 (1%)
Query: 930 LEENQINQLNALIVLLLGELTVGDRQKIMTICTIDVHSRDVVAKLILQKIESSGAFMWQS 989
+ ++ ++ L + + ++KI + +H +V+ +L + +W
Sbjct: 528 YWKEVDMKIKG-LLDKLNKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEARLLWAK 586
Query: 990 QLRHRWDKEVGD----CFANICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNM 1045
+ + D F + ++ EY+G RL+ TPL + TL+ SLH
Sbjct: 587 VQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKY 646
Query: 1046 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEF 1105
GG GPAGTGKTET K G+ +G +V VFNC + DY+ + G+ Q GAWGCFDEF
Sbjct: 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEF 706
Query: 1106 NRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPE 1165
NR+ +VLS V+ ++ + + +++ KS + E L +FIT+NPGY GR+ELPE
Sbjct: 707 NRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPE 766
Query: 1166 NLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGL 1225
NLK FR +M P I E++L GF++++ L+ K + L S +HY +GL
Sbjct: 767 NLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGL 826
Query: 1226 RAIKSVLVVAGSLK 1239
R +K VL L
Sbjct: 827 RTLKGVLRNCSPLI 840
Score = 285 bits (730), Expect = 3e-77
Identities = 70/431 (16%), Positives = 154/431 (35%), Gaps = 47/431 (10%)
Query: 399 MPDEFDQESSSQNLKLTSRVHLVYITDEMCHTDFSNKAPLFRVSFSLEEPDLVFTPTLNF 458
+F + + + L +C P + P +
Sbjct: 148 THPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSS--KYIAWPLQGW 205
Query: 459 NDEAEEESLCSQLKEI-IEDITDMGVKIKRVAKRTENTYKVWSTLEFEYDIHARTKTPLL 517
+ E IE + R+ K W ++E H + L+
Sbjct: 206 QATFGGGDHPPKSDEFVIEK------SLNRIKKF-------WKEAQYEVIEH-SSGLKLV 251
Query: 518 RCSEELIEMLEENQVQLQNMASSKFVGYFQKEVNEWQIKLSNADAVISIWIEVQRTWQHL 577
R + L + +E+ +L +M +S + F+++ + + KL+ + W+EVQ W L
Sbjct: 252 REWDVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDL 311
Query: 578 ESIFIGSDDIRQQLPEDSRRFDATDKAFRALAQDMHKTPNVVIGTNKPGLYEKLETIQKD 637
I + DI+ LP ++ +F + ++ + + + + P L+
Sbjct: 312 YGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVIHIPNFDTTLKLTIDS 371
Query: 638 LTKCEKALAQYLETKKLTYPRFYFVSSSDLLDILANGNNPEAFRP--GK--DG----KIN 689
L + +L+ +LE ++ +PRFYF+ + DLL I+ +G + + K
Sbjct: 372 LKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMFGSIESIIFL 431
Query: 690 VKIAQGMYAKDGEYVEFNGDCDCSGQANKASTEMIEMEDVLNKLME--QAALFEINKPDF 747
G+ + +GE + N + I+ ++ LN L + ++F +
Sbjct: 432 EDFITGVRSVEGEVLNLNEKIELKDS--------IQAQEWLNILDTEIKLSVFTQFR--- 480
Query: 748 KALANARKDLKMAKLIWDYI--LVIQGWMLDWKETLWKKIDSEAMD-------MELKKFT 798
L + + ++ YI ++ + W E + K + + M++K
Sbjct: 481 DCLGQIKDGTDIEVVVSKYIFQAILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLL 540
Query: 799 KELRTLDKDLR 809
+L +++
Sbjct: 541 DKLNKSSDNVK 551
Score = 109 bits (275), Expect = 6e-24
Identities = 32/250 (12%), Positives = 65/250 (26%), Gaps = 46/250 (18%)
Query: 722 EMIEMEDVLNKLMEQAALFEINKPDFKALANARKDLKMAKLIWDYILVIQGWMLDWKETL 781
E + D +K + + P+ + L + I YI D L
Sbjct: 29 EHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIA-------DKHNML 81
Query: 782 WKKIDSEAMDMELKKFTKELRTLDKDLRNWDIFLQLESEIKNMIAALKAVTELQNPAIRD 841
A E+ + + + E+ + ++ L + ++ +
Sbjct: 82 GGCPKERA---EISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCH 138
Query: 842 RHWEELMSVTKVKF----------------------------------SIDDSTTLKDLL 867
+ + VT F ID +
Sbjct: 139 KTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYI 198
Query: 868 DLELYKFEEEVKTIVDKS-VKEQQMEKVLKDFDKVWSTLEFEYDIHARTKTPLLRCSEEL 926
L ++ E +EK L K W ++E H + L+R + L
Sbjct: 199 AWPLQGWQATFGGGDHPPKSDEFVIEKSLNRIKKFWKEAQYEVIEH-SSGLKLVREWDVL 257
Query: 927 IEMLEENQIN 936
+ +E+
Sbjct: 258 EQACKEDLEE 267
Score = 57.5 bits (139), Expect = 6e-08
Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 31/237 (13%)
Query: 1024 LVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKD-LGKAIGIMVYVFNCSEQ-- 1080
++ T T + L+ G GP G+GKT + L + V N S+
Sbjct: 1247 VIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1306
Query: 1081 -----------MDY--RSCGNIYKGLAQTGAWGCF-DEFNRISVEVLSVVAVQVKSVLDS 1126
+Y S G + F DE N ++ + V L
Sbjct: 1307 TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYG--SQNVVLFLRQ 1364
Query: 1127 VKMRKSRFNFM-GENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPD----- 1180
+ ++ + + + + + P GR + E + P
Sbjct: 1365 LMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLS 1424
Query: 1181 --FALICEIML--VSEGFQEARLLSRKFITLYSLCKELLS--KQDHYDWGLRAIKSV 1231
+ + + + V E +R + LY+ CK S Q HY + R + +
Sbjct: 1425 QIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRL 1481
Score = 54.8 bits (132), Expect = 4e-07
Identities = 45/331 (13%), Positives = 91/331 (27%), Gaps = 67/331 (20%)
Query: 1411 LVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKD-LGKAIGIMVYVFNCSEQMD 1469
++ T T + L+ G GP G+GKT + L + V N S
Sbjct: 1247 VIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS---- 1302
Query: 1470 YRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQ--VKSVLDSVKMRKSRFNFMGES 1527
T + + + + V K
Sbjct: 1303 -----------KDT-----------------TTEHILSALHRHTNYVTTSKGLT------ 1328
Query: 1528 SLAGLAQTGAWGCF-DEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM-GENIKLVTT 1585
L + F DE N ++ + V L + ++ + + + +
Sbjct: 1329 -LLPKSDIKNLVLFCDEINLPKLDKYG--SQNVVLFLRQLMEKQGFWKTPENKWVTIERI 1385
Query: 1586 VGMFITMNPGYAGRAELPENLKALFRPCAMVVPD-------FALICEIML--VSEGFQEA 1636
+ P GR + E + P + + + + V E
Sbjct: 1386 HIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYT 1445
Query: 1637 RLLSRKFITLYSLCKELLS--KQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVL---- 1690
+R + LY+ CK S Q HY + R + ++ + ++ ++
Sbjct: 1446 EPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWA 1505
Query: 1691 ---MRALRDFNIPKIITEDLQVFMGLIGDLF 1718
R D + ++ F L+ +
Sbjct: 1506 YEAWRIFADRLVGV---KEKNSFEQLLYETV 1533
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 770 bits (1991), Expect = 0.0
Identities = 230/741 (31%), Positives = 371/741 (50%), Gaps = 113/741 (15%)
Query: 1235 AGSLKNWLNNVTDSMRRTGIHCMSLAVAAY------DEKPREQWLFDYPGQTALCGTQIW 1288
+ WL V M+ T +S ++ + D +W+ +YP Q L +QI
Sbjct: 400 GPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIV 459
Query: 1289 WTTEVSICFA---RLEEGYENALKDYNKKQF--IIGFAGTGKSCVWKTLYKTYVN----- 1338
W+T+V + + L+ + + A + + K + +
Sbjct: 460 WSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITEL 519
Query: 1339 AKKKPMYNDL-EPKAVTNDELFGIINPSTREW-KDGRYSDSGFLSY-----GSLLGDCFA 1391
++ + L + K +T ++ F +W RY Y ++L
Sbjct: 520 VHQRDVVRQLQKCKNLTGNKDF--------DWLYHMRY-------YYDATQENVLHKLVI 564
Query: 1392 NICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDL 1451
++ +A F + EYLG RLV TPLTDRCY+TL+Q+L MGG P GPAGTGKTET K L
Sbjct: 565 HMANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKAL 624
Query: 1452 GKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVL 1511
G +G V VF C E D ++ I+ GL Q GAWGCFDEFNR+ +LS V+ Q++++
Sbjct: 625 GSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQ 684
Query: 1512 DSVKMRKSRFNFMGESSLAGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKS 1571
++K
Sbjct: 685 VALKENSKEVEL------------------------------------------------ 696
Query: 1572 RFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSE 1631
G+NI L +G+F+TMNPGYAGR+ LP+NLK LFR AM+ PD +I ++ML S+
Sbjct: 697 ---LGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQ 753
Query: 1632 GFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDRQ-------- 1683
GF+ A +L+ K + L+ LC+E LS Q HYD+GLRA+KSVLV AG +KR +
Sbjct: 754 GFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITD 813
Query: 1684 ------------RPEDQVLMRALRDFNIPKIITEDLQVFMGLIGDLFPALDVPRKRDIDF 1731
+ E VL+ ++ D IPK++ +D+ + L+ D+FP + +
Sbjct: 814 AESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQL 873
Query: 1732 EKQVRQATIDMKLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNA 1791
K++++ L + ++ K++QL ++ + H V ++G +G GK+ W+ +
Sbjct: 874 RKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQV 933
Query: 1792 KKKPM-YNDLEPKAVTNDELFGIINPSTREWKDGLFSCLIREQAQST---GDGPKWMVMD 1847
+ ++PKA+T D+LFG ++ +TREW DGLF+ +R + W++ D
Sbjct: 934 DNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFD 993
Query: 1848 GDIDPMWIESLNTVMDDNKVLTLASNERIALTPSMRLLFEISNLRTATPATVSRAGILYI 1907
GD+DP W+E+LN+++DDNK+LTL + ER+AL ++R++FE+ +L+ AT AT+SR G+++
Sbjct: 994 GDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWF 1053
Query: 1908 NPQDLGWNPYVLSWTDTRESE 1928
+ + L ++ DT +E
Sbjct: 1054 SEEILTTQMIFQNYLDTLSNE 1074
Score = 516 bits (1330), Expect = e-149
Identities = 145/332 (43%), Positives = 204/332 (61%), Gaps = 6/332 (1%)
Query: 914 RTKTPLLRCSEELIEMLEENQINQLNALIVLLLGELTVGDRQKIMTICTIDVHSRDVVAK 973
T +E ++ +E+ LN L +L +L+ R+K + T VH RDVV +
Sbjct: 469 GGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQ 528
Query: 974 LI-LQKIESSGAFMWQSQLRHRWDKEVGD----CFANICDAEFKFDHEYLGCTPRLVITP 1028
L + + + F W +R+ +D + ++ +A F + EYLG RLV TP
Sbjct: 529 LQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTP 588
Query: 1029 LTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGN 1088
LTDRCY+TL+Q+L MGG P GPAGTGKTET K LG +G V VF C E D ++
Sbjct: 589 LTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSR 648
Query: 1089 IYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM-GENIKLVTTV 1147
I+ GL Q GAWGCFDEFNR+ +LS V+ Q++++ ++K + G+NI L +
Sbjct: 649 IFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDM 708
Query: 1148 GMFITMNPGYAGRAELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLLSRKFITL 1207
G+F+TMNPGYAGR+ LP+NLK LFR AM+ PD +I ++ML S+GF+ A +L+ K + L
Sbjct: 709 GIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPL 768
Query: 1208 YSLCKELLSKQDHYDWGLRAIKSVLVVAGSLK 1239
+ LC+E LS Q HYD+GLRA+KSVLV AG +K
Sbjct: 769 FKLCQEQLSAQSHYDFGLRALKSVLVSAGGIK 800
Score = 276 bits (708), Expect = 1e-74
Identities = 80/364 (21%), Positives = 146/364 (40%), Gaps = 34/364 (9%)
Query: 472 KEIIEDITDMGVKIKRVAKRTENTYKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQ 531
+ I ++ + + + + W+TLE + + + K L+R ++L L E+
Sbjct: 148 ENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNY-QRKCKLVRGWDDLFNKLAEHL 206
Query: 532 VQLQNMASSKFVGYFQKEVNEWQIKLSNADAVISIWIEVQRTWQHLESIFIGSDDIRQQL 591
+ M S + F++E N W +L+ +++ +WI+VQR W +LE IF GS DI Q L
Sbjct: 207 NSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLL 266
Query: 592 PEDSRRFDATDKAFRALAQDMHKTPNVVIGTNKPGLYEKLETIQKDLTKCEKALAQYLET 651
P +S RF + + F A+ + + P ++ + + +E + L K +KAL +YLE
Sbjct: 267 PAESTRFKSINSEFIAILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLER 326
Query: 652 KKLTYPRFYFVSSSDLLDILANGNNPEAFRP--GK--DG------KINVKIAQGMYAKDG 701
++ + RFYFV DLL+I+ N + + K G GM + +G
Sbjct: 327 QRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEKTTIIGMSSAEG 386
Query: 702 EYVEFNGDCDCSGQANKASTEMIEMEDVLNKLME--QAALFEINKPDFKALANARKDLKM 759
E V F + + + L + ++ L + + +
Sbjct: 387 ETVTFKKPISIANGPK--------IHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHS 438
Query: 760 AKLIW--DYI--LVIQGWMLDW---------KETLWKKIDSEAMDMELKKFTKELRTLDK 806
W +Y LV+ + W TL + E + + L L
Sbjct: 439 KYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLAD 498
Query: 807 DLRN 810
+
Sbjct: 499 SVLQ 502
Score = 204 bits (520), Expect = 1e-52
Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 2/202 (0%)
Query: 735 EQAALFEINKPDFKALANARKDLKMAKLIWDYILVIQGWMLDWKETLWKKIDSEAMDMEL 794
++ + ++++ K +W + + KET W I + L
Sbjct: 9 HGGGDYKDDDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWSAIIPRKVRKSL 68
Query: 795 KKFTKELRTLDKDLRNWDIFLQLESEIKNMIAALKAVTELQNPAIRDRHWEELMSVTKVK 854
+ ++L+ L +R + F ++ IK + +T+L + AI+DRHW+ L
Sbjct: 69 EDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITDLHSEAIKDRHWKILKKRLNTN 128
Query: 855 FSIDDSTTLKDLLDLELYKFEEEVKTIVDKSVKEQQMEKVLKDFDKVWSTLEFEYDIHAR 914
+ I + TL + D +L + E + ++ + E +E+ LK + W+TLE + + +
Sbjct: 129 WIITE-LTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNY-Q 186
Query: 915 TKTPLLRCSEELIEMLEENQIN 936
K L+R ++L L E+ +
Sbjct: 187 RKCKLVRGWDDLFNKLAEHLNS 208
Score = 41.0 bits (96), Expect = 0.005
Identities = 41/239 (17%), Positives = 73/239 (30%), Gaps = 39/239 (16%)
Query: 1051 GPAGTGKTETTKD-LGKAIGIMVYVFNCSEQ-------------MDYRS--CGNIYKGLA 1094
GP G+GKT T L V N S +Y+ G
Sbjct: 1311 GPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPT 1370
Query: 1095 QTGAWGCF--DEFNRISVEVLSVVAV--QVKSVLDSVKM-RKSRFNFMG-ENIKLVTTVG 1148
Q G W DE N S + V ++ +++ R S ++ + I+ V
Sbjct: 1371 QLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACN 1430
Query: 1149 MFITMNPGYAGRAELPENLKALFRPCAMVVPD-------FALICEIML--VSEGFQEARL 1199
P AGR +L + P + ++ + A
Sbjct: 1431 P-----PTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADN 1485
Query: 1200 LSRKFITLYSLCKELL--SKQDHYDWGLRAI-KSVLVVAGSLKNWLNNVTDSMRRTGIH 1255
L+ + YS ++ Q HY + R + + + +++ + + R H
Sbjct: 1486 LTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAH 1544
Score = 33.3 bits (76), Expect = 1.2
Identities = 47/306 (15%), Positives = 86/306 (28%), Gaps = 70/306 (22%)
Query: 1438 GPAGTGKTETTKD-LGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRIS 1496
GP G+GKT T L V N S + T
Sbjct: 1311 GPPGSGKTMTLTSTLRAFPDFEVVSLNFS---------------SAT------------- 1342
Query: 1497 VEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQTGAWGCF--DEFNRISVEVLSV 1554
+ D K + + Q G W DE N S +
Sbjct: 1343 ------TPELLLKTFDHHCEYKRTPSGET---VLRPTQLGKWLVVFCDEINLPSTDKYGT 1393
Query: 1555 VAV--QVKSVLDSVKM-RKSRFNFMG-ENIKLVTTVGMFITMNPGYAGRAELPENLKALF 1610
V ++ +++ R S ++ + I+ V P AGR +L
Sbjct: 1394 QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP-----PTDAGRVQLTHRFLRHA 1448
Query: 1611 RPCAMVVPD-------FALICEIML--VSEGFQEARLLSRKFITLYSLCKELL--SKQDH 1659
+ P + ++ + A L+ + YS ++ Q H
Sbjct: 1449 PILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAH 1508
Query: 1660 YDWGLRAI-KSVLVVAGSLKRGDRQRPEDQV------LMRALRDFNIPKIITEDLQVFMG 1712
Y + R + + + +++ D E V +R +D + E+ +
Sbjct: 1509 YIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVET---EEKEWTDK 1565
Query: 1713 LIGDLF 1718
I ++
Sbjct: 1566 KIDEVA 1571
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 82.6 bits (203), Expect = 1e-15
Identities = 100/678 (14%), Positives = 204/678 (30%), Gaps = 205/678 (30%)
Query: 332 DMDKKSDEDDERKKLLKPPSDEPIDMDVYGAASEMGSEAAPLPDILEHTEVADIGENEDD 391
+ D K +D + L S E ID + + + S L L E
Sbjct: 32 NFDCKDVQDMPKSIL----SKEEID-HIIMSKDAV-SGTLRLFWTLL-----SKQEE--- 77
Query: 392 ALSAVPGMPDEFDQESSSQNLK-LTSRVHLVYITDEMCHTDF-SNKAPLFRVSFSLEEPD 449
M +F +E N K L S + M + + L+ +
Sbjct: 78 -------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN------- 123
Query: 450 LVFTPTLNFNDEAEEESLCSQLKEI--IEDIT--DMGVKIKRV-AKRTENTYKVWSTLEF 504
VF N + L L E+ +++ + K A +YKV +
Sbjct: 124 QVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKM 180
Query: 505 EYDIH----ARTKTPLLRCSEELIEMLEENQVQLQNMASSKFVGYF--QKEVNEWQIKLS 558
++ I +P E ++EML++ Q+ +S+ + ++ Q +L
Sbjct: 181 DFKIFWLNLKNCNSP-----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 559 NADAVISIWIEVQRTWQHLESIFIGSDDIRQQLPEDSRRFDATDKAFRALA--QDMHKTP 616
+ ++ + + + +++ +++ ++A + + + L + T
Sbjct: 236 R----------LLKSKPYENCLLV-LLNVQ-----NAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 617 NVVIGTNKPGLYEKLETIQKDLTKCE--KALAQYLETKKLTYPRFYFVSSSDLLDILANG 674
+ T + L+ LT E L +YL+ + PR
Sbjct: 280 FLSAATTT---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR------------EVLT 324
Query: 675 NNPEAFRPGKDGKINVKIAQGMYAKDG----EYVEFNGDCDCSGQANKASTEMIEMEDVL 730
NP +++ IA+ + +DG + + + +CD ++S ++E +
Sbjct: 325 TNPRR--------LSI-IAESI--RDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEY- 371
Query: 731 NKLMEQAALFEINKPDFKALANARKDLK-MAKLIWDYILVIQGWMLDWKETLWKKIDSEA 789
+ F L+ L+ +W +
Sbjct: 372 -------------RKMFDRLSVFPPSAHIPTILL---------------SLIWFDVIKSD 403
Query: 790 MDMELKKFTKELRTLDKDLRNW-----DIFLQLESEIKNMIAAL--KAVTELQNPAIRD- 841
+ + + K K ++K + I+L+L+ +++N AL V P D
Sbjct: 404 VMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENE-YALHRSIVDHYNIPKTFDS 461
Query: 842 -----------------RH---------WEELMSV--------TKVKFS----IDDSTTL 863
H V K++ + L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 864 KDLLDLELYKFEEEVKTIVDKSVKEQQMEKVLKDFDKVWSTLEFEYDIHARTKTPLLRCS 923
L L+ YK I D K +++ + DF L +
Sbjct: 522 NTLQQLKFYK-----PYICDNDPKYERLVNAILDF--------------------LPKIE 556
Query: 924 EELIEMLEENQINQLNAL 941
E LI + + ++ AL
Sbjct: 557 ENLICS-KYTDLLRI-AL 572
Score = 69.5 bits (169), Expect = 9e-12
Identities = 102/712 (14%), Positives = 204/712 (28%), Gaps = 239/712 (33%)
Query: 721 TEMIEMEDVLNKLMEQAALFEINKPDFKALANARKDLKMAKLIWDYILVIQGWMLDWKET 780
E E + ++ + + F + K + D I
Sbjct: 9 FETGEHQYQYKDILS------VFEDAFV------DNFDC-KDVQDMPKSI---------- 45
Query: 781 LWKKIDSEAMDMELKKFTKELRT-------LDKDLRNWDIFLQ--LESEIKNMIAALKAV 831
+ E +D + T L K F++ L K +++ +K
Sbjct: 46 ----LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-- 99
Query: 832 TELQNPAIRDRHWEELMSVTK---VKFSIDDSTTLKDLLDLE--LYKFEEEVKTIVD--- 883
TE + P++ R + E F+ + + L+ L L L + ++D
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 884 ---KSVKEQQMEKVLKDFDKVWSTLEFEYDIH----ARTKTPLLRCSEELIEMLEENQIN 936
K+ V + + ++ I +P E ++EML
Sbjct: 160 GSGKTWVALD---VCLSYKVQ---CKMDFKIFWLNLKNCNSP-----ETVLEML------ 202
Query: 937 QLNALIVLLLGELTVGDRQKIMTICTIDVHS-RDVVAKLILQK-------IESSGAFMWQ 988
L+ + T R + + +HS + + +L+ K +
Sbjct: 203 --QKLLYQIDPNWT--SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------- 249
Query: 989 SQLRHRWDKEVGDCFANICDAEFKFDHEYLGCTPRLVIT---PLTDRCYITLSQSLHLNM 1045
L + + + + F+ L C L+ T +TD +++ + + H+++
Sbjct: 250 --LLNVQNAKAWN----------AFN---LSCKI-LLTTRFKQVTD--FLSAATTTHISL 291
Query: 1046 GGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEF 1105
T D + +++ +C Q L + E
Sbjct: 292 DHHSMT--------LTPD--EVKSLLLKYLDCRPQD-----------LPR--------EV 322
Query: 1106 NRISVEVLSVVAVQVKSVLDSVKMRKSRFNF--MGENIKLVTTVGMFITMNPGYAGRAEL 1163
+ LS++A +S++ + ++ KL T + + L
Sbjct: 323 LTTNPRRLSIIA-------ESIRDGLATWDNWKHVNCDKLTTIIESSL---------NVL 366
Query: 1164 -PENLKALFRPCAMVVPDFALI-----C---------EIMLVSEGFQEARLLSRKF---- 1204
P + +F + V P A I ++M+V + L+ ++
Sbjct: 367 EPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 1205 ITLYSLCKELLSKQ-----------DHYDWGLRAIKSVLVVAGSLKNWLNNVTDSMRRTG 1253
I++ S+ EL K DHY+ I + +L+ G
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYN-----IPKTFDSDDLIPPYLDQY--FYSHIG 478
Query: 1254 IHCMSLAVAAYDEKPRE--QWLFDYP-GQTALCGTQIWWTTEVSICFARLEEGYENALKD 1310
H L + E+ D+ + + W SI N L+
Sbjct: 479 HH---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL---------NTLQQ 526
Query: 1311 YNKKQFIIGFAGTGKSCVWKTLYKTYVNAKKKPMY----NDLE---PKAVTN 1355
YK Y+ P Y N + PK N
Sbjct: 527 LKF-------------------YKPYI-CDNDPKYERLVNAILDFLPKIEEN 558
Score = 66.8 bits (162), Expect = 6e-11
Identities = 78/557 (14%), Positives = 158/557 (28%), Gaps = 188/557 (33%)
Query: 4 DNLFNNIE--KEYHISIEVVVDYTAEFEQYSYL--WLDDMQEVLDQFLT-YG-------- 50
D L+N+ + +Y++S + Y L L +++ + + G
Sbjct: 117 DRLYNDNQVFAKYNVSRL---------QPYLKLRQALLELRP--AKNVLIDGVLGSGKTW 165
Query: 51 ---RTLNSDELD----------TMGKVGEDGL------PLLKETPPNNDAFRQKIDQYEA 91
S ++ + LL + PN + + D
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSN 222
Query: 92 LYKTVNEIEESKVFDEWLLVDLKPFKYSLL---NVVCKWSMLFKKHL--MD--------- 137
+ ++ I+ L+ KP++ LL NV + K +
Sbjct: 223 IKLRIHSIQAELRR----LLKSKPYENCLLVLLNV---QN---AKAWNAFNLSCKILLTT 272
Query: 138 ---SVINSLNELKD---FIEEADKGLATPLHKGDYEALVKIITYLKKVRDRTPTTDNMFE 191
V + L+ ++ L E ++ YL P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPD------EVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 192 PLA-AIIQLLKLYDIEFPEETYLMLQELPDRWANTK-----KIATSVKTAAQPLIAAEAS 245
P +II E +++ W N K K+ T ++++ L AE
Sbjct: 327 PRRLSII----------AE----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 246 KIRKRVVLFDIRQSTYRYQEIEEAGDEIHDLLWQNYKLYFHIEDSVHENMEEEQTMVEE- 304
K+ R+ +F S + I + L+W + + +V +
Sbjct: 373 KMFDRLSVF--PPSAH----IPT---ILLSLIWFDVI------------KSDVMVVVNKL 411
Query: 305 -KESVAPTAEQEEDDGGDNFDRDESVDLDMDKKSDEDDE-RKKLLK--------PPSDEP 354
K S+ E ++ S+ L++ K + + + ++ D
Sbjct: 412 HKYSLV------EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 355 ID-MDVY-----G---AASEMGSEAAPLPDILEHTEVADIG------ENEDDALSAVPGM 399
+D Y G E + D ++ A +A +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSI 520
Query: 400 PDEFDQESSSQNLKLTSRVHLVYITDEMCHTDFSNKAPLFRVSFSLEEPDLVFTPTLNFN 459
+ Q LK YI D + V+ + L+F
Sbjct: 521 LNTL------QQLKFYKP----YICDN--DPKYER-----LVN------AI-----LDFL 552
Query: 460 DEAEEESLCSQLKEIIE 476
+ EE +CS+ +++
Sbjct: 553 PKIEENLICSKYTDLLR 569
Score = 64.9 bits (157), Expect = 2e-10
Identities = 77/555 (13%), Positives = 159/555 (28%), Gaps = 175/555 (31%)
Query: 1299 RLEEGYE--NALKDYNKKQFII--GFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVT 1354
RL+ + AL + + ++ G G+GK+ V A + + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----------ALD--VCLSYKVQCKM 180
Query: 1355 NDELFGIINPSTREWKDGRYSDSGFLSYGSLLGDCFANICDAEFKFDHEYLGCTPRLVIT 1414
+ ++F W L+ L +C +P V+
Sbjct: 181 DFKIF---------W----------LN----LKNC-----------------NSPETVLE 200
Query: 1415 PLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG 1474
L Y + + + + + + + + + Y +C
Sbjct: 201 MLQKLLY-QIDPNWTSRSDHSSNIKL---RIHSIQAELRRL---------LKSKPYENCL 247
Query: 1475 NIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQ 1534
+ + AW F+ +S ++L + + K V D + + + + L
Sbjct: 248 LVLLNVQNAKAWNAFN----LSCKIL--LTTRFKQVTDFLSA-ATTTHISLDHHSMTLTP 300
Query: 1535 TGAWGCFDEFNRISVEVLSVVAVQ-----VKSVLDSVKMRKSRFNF--MGENIKLVTTVG 1587
++ + L + + + +S++ + ++ KL T +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 1588 MFITMNPGYAGRAEL-PENLKALFRPCAMVVPDFALICEIMLV----SEGFQEARLLSRK 1642
+ L P + +F + V P A I I+L + ++ K
Sbjct: 361 SSL---------NVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 1643 FITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKI 1702
YSL ++ +I S+ + LK + + L R++ D
Sbjct: 411 LHK-YSLVEK------QPKESTISIPSIYL---ELK---VKLENEYALHRSIVD------ 451
Query: 1703 ITEDLQVFMGLIGDLFPALDVPRKRDIDFEKQVRQATIDMKLQPEDSFI-------LKVV 1755
++P+ D D D+ D + LK +
Sbjct: 452 -----------------HYNIPKTFDSD----------DLIPPYLDQYFYSHIGHHLKNI 484
Query: 1756 QLVELFAVRHSVFI-----------IGFAGTGKSCVWKTL-----YKTYVNAKKKPMY-- 1797
+ E + VF+ A + TL YK Y+ P Y
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYER 543
Query: 1798 --NDLE---PKAVTN 1807
N + PK N
Sbjct: 544 LVNAILDFLPKIEEN 558
Score = 62.6 bits (151), Expect = 1e-09
Identities = 68/382 (17%), Positives = 122/382 (31%), Gaps = 114/382 (29%)
Query: 1625 EIMLVSEGFQEARLLSRKFITLYSLCKELLSK------QDHYDWGLRAIKSVLVVAGSLK 1678
I++ + L F TL S +E++ K + +Y + + +K
Sbjct: 53 HIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKF----------LMSPIK 99
Query: 1679 RGDRQRPEDQVLMRALRD--FNIPKIITEDLQVFMGLIGDLFPALDVPRKRDIDFEKQVR 1736
RQ + RD +N D QVF +V R + ++R
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYN-------DNQVF--------AKYNVSRLQPY---LKLR 141
Query: 1737 QATIDMKLQPEDSFILKVVQLVELFAVRHSVFIIGFAGTGKSCVWKTLYKTYVNAKKKP- 1795
QA ++L+P + V I G G+GK+ V + +Y K
Sbjct: 142 QAL--LELRPAKN-----------------VLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 1796 -MY-----NDLEPKAVTN--DELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWMVMD 1847
++ N P+ V +L I+P+ D + I+ + S + ++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLK- 239
Query: 1848 GDIDPMWIESLNTVMDD--N-----------KVLTLASNERIA--LTPSMRLLFEISNLR 1892
+ L V+ + N K+L +++ L+ + + +
Sbjct: 240 ---SKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 1893 TA-TPATVSR--AGILYINPQDL-----GWNPYVLS------------WTDTRESESEK- 1931
TP V L PQDL NP LS W + + +K
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 1932 -NILMGLFDKLTP---RTSYYN 1949
I+ + L P R +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDR 377
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 6e-10
Identities = 79/519 (15%), Positives = 152/519 (29%), Gaps = 190/519 (36%)
Query: 27 EFEQYSYLWLDDMQEVLDQFLTYGRTLNSDELDTMGKVGE-----------DGLPLLKET 75
EFE YL +D+ L + T+ K E P K++
Sbjct: 90 EFEN-CYLEGNDIH-------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 76 PPNNDAFRQKIDQYEALYKTVNEIEESKV-------------FDEWLLVDLKPFK-YSLL 121
AL++ V E +++ F+E L DL ++ Y +L
Sbjct: 142 NS-------------ALFRAVGE-GNAQLVAIFGGQGNTDDYFEE--LRDL--YQTYHVL 183
Query: 122 NVVCKWSMLFKKHLMDSVINSLNELKDFIEEADKGLATPLHKGD------YEALVKIITY 175
+ D I+ + + L+ L + + + I+ +
Sbjct: 184 ------------------------VGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEW 218
Query: 176 LKKVRDRTPTTDNMFE-----PLAAIIQLLKLYDIEFPEETYLMLQELPDRWANTKKIAT 230
L+ TP D + PL +IQL Y + + L +
Sbjct: 219 LEN-PSNTPDKDYLLSIPISCPLIGVIQLAH-Y--------VVTAKLLGFTPGELRSYLK 268
Query: 231 SVKTAAQPLIAAEASKIRKRVVLFDIRQSTYRYQEIEEAGDEIHDLLWQNYKLYFHIEDS 290
+Q L+ A A I ++ + + + + + F I
Sbjct: 269 GATGHSQGLVTAVA-----------IAETD--------SWESFFVSVRKAITVLFFIGVR 309
Query: 291 VHENMEEEQTMVEEKESVAPTAEQEEDDGGD----------NFDRDESVDLDMDKKSDED 340
+E S+ P+ ++ + + N +++ V ++K +
Sbjct: 310 CYEAYPN--------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-VQDYVNKTNSHL 360
Query: 341 DERKKL---LK----------PPSDEPIDMDVYGAASEMGSEAAPLPDILEHTEVADIGE 387
K++ L PP +YG + AP G
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQ------SLYGLNLTLRKAKAP------------SGL 402
Query: 388 NEDDALSAVPGMPDEFDQES---SSQNLKLTSRVHLVYITD--EMCHTDFSNKAPLFRVS 442
++ S +P F + S++ L + S H + ++ + D F
Sbjct: 403 DQ----SRIP-----FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 443 FSLEEPDLVFTPTLNFNDEAEEESLCSQLKEIIEDITDM 481
++ P V+ T + +D L I E I D
Sbjct: 454 -DIQIP--VY-DTFDGSD------LRVLSGSISERIVDC 482
Score = 63.1 bits (153), Expect = 9e-10
Identities = 85/534 (15%), Positives = 162/534 (30%), Gaps = 165/534 (30%)
Query: 1490 DEFNRISVEVLSVVAV--QVKSVLDSVKMRKSRF-NFMGESSLAGLAQTGAWGCFDEFNR 1546
++FN+I E A + + + V +F + ++ L + G FD+
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELV----GKFLGY-----VSSLVEPSKVGQFDQ--- 82
Query: 1547 ISVEVLSVVAVQVKSVLDSVKMRKSRF--NFM-GENIKLVTTVGMFITMNPG-------- 1595
VL L F ++ G +I + N
Sbjct: 83 ----VL-------NLCLTE-------FENCYLEGNDIH--ALAAKLLQENDTTLVKTKEL 122
Query: 1596 ----YAGRAELPENLK-----ALFRPCAMVVPDFALICEIMLV-------SEGFQEAR-- 1637
R ALFR A+ + +++ + + F+E R
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFR--AVGEGNA----QLVAIFGGQGNTDDYFEELRDL 176
Query: 1638 ----------LLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDRQRPED 1687
L+ TL L + L + + GL I L P+
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWL-------ENPSNTPDK 228
Query: 1688 QVLMRALRDFNIPKI-ITEDLQ--VF---MGLI-GDLFPALD--VPRKRDIDFEKQVRQA 1738
L+ + P I + + V +G G+L L + + V
Sbjct: 229 DYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-----VTAV 281
Query: 1739 TIDMKLQPEDSFILKVVQLVELFAVRHSVFIIGFAG---TGKSCVWKTLYKTYVNAKKK- 1794
I +SF + V + + + +F IG + + ++ + + +
Sbjct: 282 AIAET-DSWESFFVSVRKAITV------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 1795 --PMYN--DLEPKAV------TNDELFGIINPSTREWKDGLFSCLIREQAQSTGDGPKWM 1844
PM + +L + V TN L P+ ++ + L+ +G K +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHL-----PAGKQ----VEISLV--------NGAKNL 377
Query: 1845 VMDGDIDPMWIESLNTVMDDNKVLTLASNERI-----ALTPSMRLL-----FEISNLRTA 1894
V+ G P + LN + K + RI L S R L F L A
Sbjct: 378 VVSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 1895 TP---ATVSRAGILYINPQDLG---WNPYVLSWTDTRESESEKNILMGLFDKLT 1942
+ + + + N +D+ ++ + +D R +I + D +
Sbjct: 436 SDLINKDLVKNNVS-FNAKDIQIPVYDTF--DGSDLRVLSG--SISERIVDCII 484
Score = 62.0 bits (150), Expect = 2e-09
Identities = 97/638 (15%), Positives = 191/638 (29%), Gaps = 220/638 (34%)
Query: 1196 EARLLSR--KFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAGSLKNWLNNVTDS-MRRT 1252
A L+ + +++ SL + SK +D L L + +
Sbjct: 57 PAELVGKFLGYVS--SLVEP--SKVGQFDQVLNLC-------------LTEFENCYLEGN 99
Query: 1253 GIHCMSLAVAAYDEKP---REQWLFDYPGQTALCGTQIWWTTEVSICFAR-LEEGYENAL 1308
IH ++ + ++ ++ + +Y I R ++ +AL
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNY--------------ITARIMAKRPFDKKSNSAL 145
Query: 1309 ----KDYNKKQFIIGFAGTGKSCVW----KTLYKTYVNAKKKPMYNDL-EPKAVTNDELF 1359
+ N + I F G G + + + LY+TY + DL + A T EL
Sbjct: 146 FRAVGEGNAQLVAI-FGGQGNTDDYFEELRDLYQTY-----HVLVGDLIKFSAETLSEL- 198
Query: 1360 GIINPSTREWKDGRYSDSGFLSYGSLLGDCFANICDAEFKFDHEYLGCT-----PRLVIT 1414
+ G + + + D +YL + P + +
Sbjct: 199 -----IRTTLDAEKVFTQGL--------NILEWLENPSNTPDKDYL-LSIPISCPLIGVI 244
Query: 1415 PLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG 1474
L Y+ ++ L G + G G + G++ V
Sbjct: 245 QLA--HYVVTAKLLGFTPGELRSYLKGA--------TGHSQGLVTAVA------------ 282
Query: 1475 NIYKGLAQTGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGESSLAGLAQ 1534
+A+T +W + F + ++V+ F F+G
Sbjct: 283 -----IAETDSW---ESFFVSVRKAITVL-----------------F-FIG--------- 307
Query: 1535 TGAWGCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFM----GENIKLVTTVGMFI 1590
C++ + S+ S++ DS++ + + M + V ++
Sbjct: 308 ---VRCYEAYPNTSLP-PSILE-------DSLENNEGVPSPMLSISNLTQEQVQD---YV 353
Query: 1591 T-MNPGYAGRAELPENLK---ALF-RPCAMVVPDFALICEIMLVSEGFQEARLLSRKFIT 1645
N + LP + +L +VV G ++
Sbjct: 354 NKTN------SHLPAGKQVEISLVNGAKNLVV-------------SGPPQS--------- 385
Query: 1646 LYSLCKEL--LSKQDHYD-----WGLRAIKSV---LVV---------AGSLKRGDRQRPE 1686
LY L L D + R +K L V + ++ +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 1687 DQVLMRALRDFNIPKIITE---DLQVFMG-LIGDLFPALDVPRKRDIDFEKQVR-QAT-- 1739
+ V A +D IP T DL+V G + + + + +E + +AT
Sbjct: 446 NNVSFNA-KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP---VKWETTTQFKATHI 501
Query: 1740 IDMKLQP-EDSFILKVV-QLVELFAVRHSVFIIGFAGT 1775
+D P S + + + + VR +I AGT
Sbjct: 502 LD--FGPGGASGLGVLTHRNKDGTGVR----VI-VAGT 532
Score = 61.2 bits (148), Expect = 3e-09
Identities = 105/690 (15%), Positives = 183/690 (26%), Gaps = 282/690 (40%)
Query: 894 VLKD-FDKVWSTLEFEYDIHARTKTPLLRCSEELI--------EMLEENQINQLNALIVL 944
L++ F+K L + A P EL+ ++E +++ Q + ++ L
Sbjct: 32 QLQEQFNK---ILPEPTEGFAADDEP--TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 945 LLGELTVGDRQKIMTICTIDVHSRDVVAKLILQKIESSGAFMWQSQLRHRWDKEVGDCFA 1004
L E + D+H+ + AKL+ + + L KE+ +
Sbjct: 87 CLTEFE----NCYL--EGNDIHA--LAAKLLQEN---------DTTLVKT--KELIKNY- 126
Query: 1005 NICDAEFKFDHEYLGCTPRLVITPLTDRCYITLSQSLHLNMGGAPAGPA-------GTGK 1057
+ R + S S G A G G
Sbjct: 127 ------------ITARI-------MAKRPFDKKSNSALFR--AVGEGNAQLVAIFGGQGN 165
Query: 1058 TETTKDLGKAIGIMVYVFNCSE-QMDYRSCGNIYKGLAQTGAWGCFDEFNRISVEVLSVV 1116
T+ Y E + Y Y L + + S E LS +
Sbjct: 166 TDD------------YF---EELRDLY----QTYHVLVG--------DLIKFSAETLSEL 198
Query: 1117 AVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKALFRPCAM 1176
+++ LD+ K+ N + ++ NP
Sbjct: 199 ---IRTTLDAEKVFTQGLNILE-----------WLE-NPSNT------------------ 225
Query: 1177 VVPDFALICEIMLVSEGFQEARLLSRKFITLYSLCKELLSKQDHYDWGLRAIKSVLVVAG 1236
PD + I +S I + L HY + K + G
Sbjct: 226 --PDKDYLLSI-----------PISCPLIGVIQLA--------HY---VVTAKLLGFTPG 261
Query: 1237 SLKNWLNNVTDSMRRTGIHCMSLAVAAYDEKPREQWLFDYPGQTALCGTQIWWTTEVSIC 1296
L+++L T H L A A + W
Sbjct: 262 ELRSYLKGAT-------GHSQGLVTAVA---------------IAETDS--W-------- 289
Query: 1297 FARLEEGYENALKDYNKKQFIIGFAG---TGKSCVWKTLYKTYVNAKKK---PMYN--DL 1348
E + + K F IG + + ++ + + + PM + +L
Sbjct: 290 ----ESFFVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 1349 EPKAV------TNDEL-------FGIIN----------PST--------REWKDGRYSD- 1376
+ V TN L ++N P + R+ K D
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 1377 -------------SGFL-------SYGSLLGDCFANICD----AEFKFDHEYLGC----- 1407
+ FL S LL I F+ + +
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHS--HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 1408 -------------TPRLVITPLTDRCY---ITLSQSLH-LNMGGAPAGPAGTGK-TETTK 1449
+ R+V + T ++ H L+ G P G +G G T K
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--PGGASGLGVLTHRNK 520
Query: 1450 DLGKAIG-IMVYVFNCSEQMDYRSCGNIYK 1478
D G + I+ + + DY G +K
Sbjct: 521 D-GTGVRVIVAGTLDINPDDDY---G--FK 544
Score = 53.5 bits (128), Expect = 9e-07
Identities = 118/756 (15%), Positives = 207/756 (27%), Gaps = 325/756 (42%)
Query: 442 SFSLEEPDLVFT---PTLNFNDEAEEESLCSQLKEIIEDITDMGVKIKRVAKRTENTYKV 498
+L L PT +F + SQL+E
Sbjct: 8 PLTLSHGSLEHVLLVPTASF-------FIASQLQE------------------------- 35
Query: 499 WSTLEFEYDIHARTKTPLLRCSEELIEMLEENQVQLQNMASSKFVGYFQKEVNEWQIKLS 558
+F + T+ +E E L KF+GY V ++
Sbjct: 36 ----QFNKILPEPTEG--FAADDEPTTPAE-----L----VGKFLGYVSSLVEPSKV--G 78
Query: 559 NADAVISIWIEVQRTWQHLESIFIGSDDIRQQLPEDSRRFDATDKAFRALAQDMHKTPNV 618
D V+++ E+ ++ +DI ALA +
Sbjct: 79 QFDQVLNL------CLTEFENCYLEGNDIH------------------ALAAKL------ 108
Query: 619 VIGTNKPGLYEKLETIQKDLTKCEKALAQYLETKKLTYPRFYFVSSSDLLDILANGNNPE 678
L+ L K ++ + Y+ + + F S+S L + G
Sbjct: 109 ------------LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG---- 152
Query: 679 AFRPGKDGKINVKIAQGMYAKDGEYVEFNGDCDCSGQANKASTEMIEMEDVLNKLMEQAA 738
N ++ F GQ N +D +L +
Sbjct: 153 ----------NAQL----------VAIFG------GQGN--------TDDYFEELRD--- 175
Query: 739 LFEINKPDFKALANARKDLKMAKLIWDYILVIQGWMLDWKETLWKKIDSEAMDMELKKFT 798
L++ L+ D I ETL + I + D E K FT
Sbjct: 176 LYQTYHV----------------LVGDLIKFSA-------ETLSELIRTTL-DAE-KVFT 210
Query: 799 KELRTLDKDLRNW--------D-------------IFL-QLESEIKNMIAALKAVTELQN 836
+ L ++ W D I + QL + + K +
Sbjct: 211 QGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQL----AHYVVTAK-LLGF-T 259
Query: 837 PA-IRDR------HWEELMSVTKVKFSIDDSTTLKDLLDLELYKFEEEVKTIVDKSVKEQ 889
P +R H + L VT V + + + + F V+ +
Sbjct: 260 PGELRSYLKGATGHSQGL--VTAVAIAE--TDSWES--------FFVSVRKAI------- 300
Query: 890 QMEKVLKDFDKVWSTLEFEYDIHARTKTP--LLRCSEELIE-----MLE---------EN 933
VL F + + Y+ + T P +L S E E ML ++
Sbjct: 301 ---TVL--F---FIGVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 934 QINQLNALIVLLLGELTVGDRQKIMTICTIDVH-SRD--VVA---------KLILQKIE- 980
+N+ N+ + +++ I + VV+ L L+K +
Sbjct: 352 YVNKTNS---------HLPAGKQV----EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 981 SSGAFMWQSQLRHRWDKEVGD-CFANI--------------------CDAEFKFDHEYLG 1019
SG QS++ K F + F+ + +
Sbjct: 399 PSGLD--QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 1020 C------------------TPRLVITPLTDRCY---ITLSQSLH-LNMGGAPAGPAGTGK 1057
+ R+V + T ++ H L+ G P G +G G
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--PGGASGLGV 514
Query: 1058 -TETTKDLGKAIG-IMVYVFNCSEQMDYRSCGNIYK 1091
T KD G + I+ + + DY G +K
Sbjct: 515 LTHRNKD-GTGVRVIVAGTLDINPDDDY---G--FK 544
Score = 47.4 bits (112), Expect = 5e-05
Identities = 49/297 (16%), Positives = 92/297 (30%), Gaps = 124/297 (41%)
Query: 1452 GKAI----GIMVY------------VFNCSEQMDYRSCGNIYKG----LAQTGAWGCFDE 1491
GK I M++ +F ++++ S ++ L+ T +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSEKGLLSAT-------Q 1730
Query: 1492 FNRISVEVLSVVAVQVKSVLDSVKMRKSRFNF----------MGE-SSLAGLAQTGAWGC 1540
F + ++ ++ A + + KS+ +GE ++LA LA
Sbjct: 1731 FTQPALTLMEKAAFED--------L-KSKGLIPADATFAGHSLGEYAALASLA------- 1774
Query: 1541 FDEFNRISVEVLSVVAVQVKSVLDSVKMR-KSRFNFMGENIKLVTTVGMFITMNPGYAGR 1599
+V+S+ +S+++ V R + + + + GM I +NPG
Sbjct: 1775 ---------DVMSI-----ESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAINPGRVAA 1819
Query: 1600 AELPENLKALFRPCAMVVPDFALICEIMLV---SEGFQEARLLSRKFITLYSLCKELLSK 1656
+ E L+ + V + EI V E Q
Sbjct: 1820 SFSQEALQYV---VERVGKRTGWLVEI--VNYNVENQQ---------------------- 1852
Query: 1657 QDHYDWGLRAIKSVLVVAGSLKRGDRQRPEDQVLMRALRDFNIPKIITEDLQVFMGL 1713
Y V AG L+ D + L + KI +LQ + L
Sbjct: 1853 ---Y-----------VAAGDLRALDT-------VTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 47.4 bits (112), Expect = 7e-05
Identities = 60/364 (16%), Positives = 112/364 (30%), Gaps = 147/364 (40%)
Query: 819 SEIKNMIAAL----KAVTELQNPAIRDRHWEELMSVTKVKFSI-----DDSTTLKDLLDL 869
S+ + M L KA ++ N A D H+++ FSI ++ L
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRA--DNHFKDTYG-----FSILDIVINNPVNLTIHFGG 1678
Query: 870 -------ELY---KFEEEVKTIVDKSVKEQQMEKVLKDFDKVWSTLEFEYDIHARTKT-- 917
E Y FE TIVD +K EK+ K+ ++ ++ F + + T
Sbjct: 1679 EKGKRIRENYSAMIFE----TIVDGKLK---TEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 918 --P-LLRCSEELIEMLEENQINQLNALIVLL---LGELT----VGDRQKIMTICTIDVHS 967
P L + E L+ + +A LGE + D +M+I
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADA--TFAGHSLGEYAALASLAD---VMSI------- 1779
Query: 968 RDVVAKLILQKIESSGAFMWQSQLRHRWDKEVGDCFANIC--DAEFKFDHEYLGCTPRLV 1025
+V ++ + +R G D + ++ + P V
Sbjct: 1780 ESLV-EV----------------VFYR-----GMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 1026 ITPLTDRCYITLSQSLHLNMGGAPAGPAGTGKTETTKDLGKAIGIMVYV--FNCSEQMDY 1083
+ ++L + +GK G +V + +N Q
Sbjct: 1818 AASFSQ-------EALQ----------------YVVERVGKRTGWLVEIVNYNVENQ--- 1851
Query: 1084 RSCGNIYKGLAQTGAWGCFDEFNRISVEVLS--VVAVQ-VKSVLDSVKMRKSRFNFMGEN 1140
Q V + + A+ V +VL+ +K++K
Sbjct: 1852 -----------QY---------------VAAGDLRALDTVTNVLNFIKLQK--------- 1876
Query: 1141 IKLV 1144
I ++
Sbjct: 1877 IDII 1880
Score = 41.6 bits (97), Expect = 0.003
Identities = 47/297 (15%), Positives = 80/297 (26%), Gaps = 120/297 (40%)
Query: 533 QLQNM-----ASSKFVGYFQKEVNEWQIKLSNADAV------ISIWIEVQRTWQHLESIF 581
Q Q M +SK ++V W AD SI V +L F
Sbjct: 1627 QEQGMGMDLYKTSKAA----QDV--WN----RADNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 582 IGSDD--IRQ-------QLPEDSRRFDATDKAFRALAQD----MHKTPNVVIGTNKPGLY 628
G IR+ + D + T+K F+ + + ++
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGK--LKTEKIFKEINEHSTSYTFRSEK----------- 1723
Query: 629 EKLETIQKDLTK--------CEKALAQYLETKKLTYPRFYF-----------VSSSDLLD 669
L T+ EKA + L++K L F S +D++
Sbjct: 1724 GLL-----SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 670 I----------------------LANGN------NPEAFRPGKDGKINVKIAQGMYAKDG 701
I L N NP + + + + + G
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 702 EYVE---FNGDCD-----CSGQANKASTEMIEMEDVLNKLMEQAALFEINKPDFKAL 750
VE +N + +G +A L+ + ++ K D L
Sbjct: 1839 WLVEIVNYN--VENQQYVAAGDL-RA----------LDTVTNVLNFIKLQKIDIIEL 1882
Score = 37.7 bits (87), Expect = 0.048
Identities = 49/307 (15%), Positives = 102/307 (33%), Gaps = 99/307 (32%)
Query: 34 LWLDDMQEVLDQFL--TYGRTL------NSDELDTMGKVGEDGLPLLKETPPNNDAFRQK 85
+W + D TYG ++ N L T+ GE G ++
Sbjct: 1645 VW-NRA----DNHFKDTYGFSILDIVINNPVNL-TIHFGGEKG---------------KR 1683
Query: 86 I-DQYEAL-YKTVNE--IEESKVFDEWLLVDLKPFKYS------LLNV-----VCKWSML 130
I + Y A+ ++T+ + ++ K+F E ++ Y+ LL+ L
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKE---INEHSTSYTFRSEKGLLSATQFTQPA----L 1736
Query: 131 FKKHLMDSVINSLNELKD-FIEEADKGLATPLHK-GDYEALVKIITYLKKVRDRTPTTDN 188
LM+ +LK + AD A H G+Y AL + +
Sbjct: 1737 T---LMEKAA--FEDLKSKGLIPADATFAG--HSLGEYAALASLADVM------------ 1777
Query: 189 MFEPLAAIIQLL----KLYDIEFPE-----ETYLMLQELPDRWANTKKIATSVKTAAQPL 239
+ ++++++ + P Y M+ P R +A S A
Sbjct: 1778 ---SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR------VAASFSQEALQY 1828
Query: 240 IAAEASKIRKRVVL---FDIRQSTY----RYQEIEEAGDEIHDLLWQNYKLYFHIEDSVH 292
+ K +V +++ Y + ++ + ++ + Q + ++ S+
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI-IELQKSLS 1887
Query: 293 -ENMEEE 298
E +E
Sbjct: 1888 LEEVEGH 1894
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.5 bits (94), Expect = 0.002
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 235 AAQPLIAAEASKIRKRVVLFDIR------QSTYRYQEI-EEAGDEIHDLLWQNYKLYF-H 286
A + E IRK R S QE E+A ++ + W +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE--W--NQRQSEQ 130
Query: 287 IEDSVHENMEEEQTMVEEKES 307
+E + N ++ ++ ++
Sbjct: 131 VEKNKINNRIADKAFYQQPDA 151
Score = 34.4 bits (78), Expect = 0.22
Identities = 11/64 (17%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 296 EEEQTMVEEKESVAPTAEQEEDDGG----DNFDRDESVDLDMDKKSDEDDERKKLLKPPS 351
EE++ ++E ++ + EQE + + +++ +S ++ +K ++ + K + P
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-KAFYQQPD 150
Query: 352 DEPI 355
+ I
Sbjct: 151 ADII 154
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 33.9 bits (77), Expect = 0.14
Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 22/88 (25%)
Query: 399 MPDEFDQESSSQNLKLTSRVHLVYITDEMCH---------------TDFSNKAPLFRVSF 443
M + + + L+ C TD AP+ R+
Sbjct: 1 MRGSHHHHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQM 60
Query: 444 SLEEPD-------LVFTPTLNFNDEAEE 464
P + FTPT E
Sbjct: 61 RDPLPPGLELARPVTFTPTFVLMAGDVE 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.23
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 410 QNLK-LTSRVHLVYITDEMCHTDFSNKAPLFRVSFSLE 446
Q LK L + + L Y D AP + ++E
Sbjct: 20 QALKKLQASLKL-YADDS---------APALAIKATME 47
Score = 33.0 bits (74), Expect = 0.45
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 216 QELPDRWANTKKIATSVKTAA---QPLIAAEAS 245
Q L KK+ S+K A P +A +A+
Sbjct: 20 QAL-------KKLQASLKLYADDSAPALAIKAT 45
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 34.9 bits (79), Expect = 0.31
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 268 EAGDEIHDLLWQNYKLYFHIEDSVHENMEEEQTMVEEKESVAPTAEQEEDDGGDNFDRDE 327
G+++ D L +F E E+E+ E +ED+ + D
Sbjct: 343 SIGEQLKDKLIPRAVDWFTGAALEFEFEEDEE-------------EADEDEDEEEDDDHG 389
Query: 328 SVDLDMDKKSDEDDERKKLLKPP 350
D D + ++DD + + P
Sbjct: 390 LEDDDGESAEEQDDFAGRPEQAP 412
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 33.8 bits (76), Expect = 0.58
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 268 EAGDEIHDLLWQNYKLYFHIEDSVHENMEEEQTMVEEKESVAPTAEQEEDDGGDNFDRDE 327
E I + + Y+ E+ + S + + ++ DE
Sbjct: 272 EVALTIKERIIPYAVDYYLGIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDE 331
Query: 328 SVDLDMDKKSDEDDERKKLLKPPSDEP 354
+ ++D +D+E ++ +++P
Sbjct: 332 NS--NVDTNEYDDNEEEEEGAKSNEDP 356
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 33.1 bits (75), Expect = 0.71
Identities = 26/219 (11%), Positives = 63/219 (28%), Gaps = 38/219 (17%)
Query: 35 WLDDMQEVLDQFLTYGRTLNSDEL----------------DTMGKVGEDGLPLLKETPPN 78
W +++L Q +L D + ++ L + +
Sbjct: 29 WAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHD 88
Query: 79 NDAFRQKIDQYEALYKTVNEIEESKVFDEWLLVDLKPFKYSLLNVVCKWSMLFKKHLMDS 138
+ + + + + + + E L K LL + + + F K
Sbjct: 89 AVNVNDRCQKICDQWDRLGTLTQKR--REALERMEK-----LLETIDQLHLEFAKRA--- 138
Query: 139 VINSLNELKDFIEEADKGLATPLHKGDYEALVKIITY-------LKKVRDRTPTTDNMFE 191
+++E A + L E + +IT L + + +
Sbjct: 139 -----APFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQN 193
Query: 192 PLAAIIQLLKLYDIEFPEETYLMLQELPDRWANTKKIAT 230
+ +IQ + + + + EL +W K++
Sbjct: 194 EVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVP 232
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 32.6 bits (75), Expect = 1.5
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 1050 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM 1081
AGP G GKTE T L KA+GI + F+ SE M
Sbjct: 494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525
Score = 32.6 bits (75), Expect = 1.5
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 1437 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQM 1468
AGP G GKTE T L KA+GI + F+ SE M
Sbjct: 494 AGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 32.7 bits (74), Expect = 1.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 600 ATDKAFRALAQDMHKTPNVVIGTNKPGLYEKLETIQKDLTKCEKALAQY 648
+ L QD TPN V+ G + LE+I L++ + ALA
Sbjct: 953 TVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAAL 1001
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 31.8 bits (73), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 1050 AGPAGTGKTETTKDL-----GKAIGIMVYVFNCSE 1079
+GP GTGKT T L G+ N S+
Sbjct: 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
Score = 31.8 bits (73), Expect = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 1437 AGPAGTGKTETTKDL-----GKAIGIMVYVFNCSE 1466
+GP GTGKT T L G+ N S+
Sbjct: 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 32.2 bits (72), Expect = 2.2
Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 25/297 (8%)
Query: 35 WLDDMQEVLDQFLTYGRTLNSDELDTMGKVGEDGLPLLKETPPNNDAFRQKIDQ-YEALY 93
W +++L Q +L E+ + + E L + + E Y
Sbjct: 146 WAYGKEQILLQKDYESASL--TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDY 203
Query: 94 KTVNEIEE--SKVFDEW--LLVDLKPFKYSLLNVVCKWSMLFKKHLMDSVINSLNELKDF 149
+ + K+ D+W L + + +L + + L ++
Sbjct: 204 HDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETI--DQLHLEFAKRAAPFNNW 261
Query: 150 IEEADKGLATPLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQLL-------KL 202
+E A + L E + +IT ++ + P D + + AI + +
Sbjct: 262 MEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNI 321
Query: 203 YDIEFPEETYLMLQELPDRWANTKKIATSVKTAAQPLIAAEASKIRKRVVLFDIRQSTYR 262
+ + + EL +W K++ + Q +A + + R R
Sbjct: 322 RISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFA-------- 373
Query: 263 YQEIEEAGDEIHDLLWQNYKLYFHIEDSVHENMEEEQTMVEEKESVAPTAEQEEDDG 319
+ G I + + + + I ++ + M + + + ++ E D
Sbjct: 374 -AQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDH 429
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of
glycosyl hydrol cellulose degradation; 1.60A {Clostridium
cellulolyticum} SCOP: c.1.8.3
Length = 380
Score = 31.6 bits (71), Expect = 2.4
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 1274 FDYPGQTALCGTQIWWTTEVSICFARLEEGYENALKDYNKK--QFIIG-FAGTGKSCVWK 1330
+++ G G W S + + +N Y + IIG K+ +
Sbjct: 259 WNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRGIPVIIGECGAVDKNNLKT 318
Query: 1331 TL--YKTYVNAKKK----PMYNDLEPKAVTNDELFGIINPSTREWKD 1371
+ YV K + D + ELFG + + ++K
Sbjct: 319 RVEYMSYYVAQAKARGILCILWDNNNFS-GTGELFGFFDRRSCQFKF 364
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 31.6 bits (71), Expect = 2.5
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 1315 QFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGI 1361
+G AG+GK+ + Y+ K Y +L+ I
Sbjct: 17 VVFVGTAGSGKTTLTGEFG-RYLEDNYKVAYVNLDTGVKELPYEPSI 62
Score = 31.6 bits (71), Expect = 2.6
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 9/124 (7%)
Query: 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLF 1826
V +G AG+GK+ + Y+ K Y +L+ I ++
Sbjct: 17 VVFVGTAGSGKTTLTGEFG-RYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEE--- 72
Query: 1827 SCLIREQAQSTGDGPKWMVMDGDIDPMWIESLNTVMDDNKVL---TLASNERIALTPSMR 1883
++RE G + + ++ + + +N + T E
Sbjct: 73 --IMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGV 130
Query: 1884 LLFE 1887
L E
Sbjct: 131 RLME 134
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 31.0 bits (70), Expect = 3.8
Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 40/216 (18%)
Query: 35 WLDDMQEVLDQFLTYGRTLNSDELDTMGKVGEDGLPLLKETPPNNDAFRQKIDQYEALYK 94
WL +++ +L YG+ L S LLK+ + I +E K
Sbjct: 18 WLSEVEALLAS-EDYGKDLASVNN------------LLKK----HQLLEADISAHEDRLK 60
Query: 95 TVNEIEESKVFDEWLLVDLKPFKYSLLN-----VVCKWSMLF------KKHLMDSV---- 139
+N +S L+ F S + + ++ + + L +S
Sbjct: 61 DLNSQADS-------LMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ 113
Query: 140 -INSLNELKDFIEEADKGLATPLHKGDYEALVKIITYLKKVRDRTPTTDNMFEPLAAIIQ 198
+++ + +I+E +++ + D + + K++ + + + +
Sbjct: 114 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGK 173
Query: 199 LLKLYDIEFPEETYLMLQELPDRWANTKKIATSVKT 234
L + EE L + D W K++A +
Sbjct: 174 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQ 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 31.0 bits (70), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1050 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRS 1085
GP G GKT + + +G + N S D RS
Sbjct: 83 YGPPGIGKTTAAHLVAQELGYDILEQNAS---DVRS 115
Score = 31.0 bits (70), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1437 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRS 1472
GP G GKT + + +G + N S D RS
Sbjct: 83 YGPPGIGKTTAAHLVAQELGYDILEQNAS---DVRS 115
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 30.8 bits (70), Expect = 4.9
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 1050 AGPAGTGKTETTKDL-----GKAIGIMVYVFNCSE 1079
+GP GTGKT T L G+ N S+
Sbjct: 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
Score = 30.8 bits (70), Expect = 4.9
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 1437 AGPAGTGKTETTKDL-----GKAIGIMVYVFNCSE 1466
+GP GTGKT T L G+ N S+
Sbjct: 44 SGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A
{Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 30.2 bits (69), Expect = 5.3
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 1050 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG 1087
+G G GKT + L K + NC + CG
Sbjct: 51 SGTRGVGKTSIARLLAKGL-------NCETGITATPCG 81
Score = 30.2 bits (69), Expect = 5.3
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 1437 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG 1474
+G G GKT + L K + NC + CG
Sbjct: 51 SGTRGVGKTSIARLLAKGL-------NCETGITATPCG 81
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics,
PSI, protein structure initiative, northeast structural
genomics consortium; NMR {Bacillus subtilis} SCOP:
a.24.26.1 PDB: 2im8_A
Length = 131
Score = 29.3 bits (65), Expect = 6.1
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 516 LLRCSEELIEMLEENQVQLQNMASSKFVGYFQKEVNEWQIKLSNADAVISIWIEVQRTWQ 575
LL +E++IE+ E+ + Q +S F + + + D + + W E
Sbjct: 6 LLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPA---VEENDELAARWAEGALELI 62
Query: 576 HLES 579
+
Sbjct: 63 KVRR 66
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 30.3 bits (67), Expect = 7.2
Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 684 KDGKINVKIAQGMYAKDGEYVEFNGDCDCSGQANKASTEMIEMED---VLNKLMEQAALF 740
KD K+N K + + V+ + + + T+ +E E+ L ++A +
Sbjct: 24 KDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQRAEID 83
Query: 741 EINKPDFKALANARKDLKMAKLIWDYILVIQGWMLDWKETLWKKIDSEAMDMELKKFTKE 800
F+ A + + L + +L+ ++ Q + L + E K ++
Sbjct: 84 RA----FEEAAGSAETLSVERLV-TFLQHQQR-EEEAGPALALSLIERYEPSETAKAQRQ 137
Query: 801 L 801
+
Sbjct: 138 M 138
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding
protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos
taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Length = 219
Score = 29.7 bits (66), Expect = 8.2
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 289 DSVHENMEEEQTMVEEKESVAPTAEQEEDDGGDNFDRDESVDLDMDKKSDEDDE-----R 343
+ M E++ E+ +A AE EED+ N+ + ++ D+DDE +
Sbjct: 10 GGILGLMAEQEPTAEQLAQIA--AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYK 67
Query: 344 KKLLKPPSDEPIDMD 358
+ LL +
Sbjct: 68 EALLGRVAVSADPNV 82
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.0 bits (67), Expect = 8.7
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1754 VVQLVELFAVRHSVFII-GFAGTGKSCVWKTLYKTYVNAKKKP 1795
+++ + I G AGTG + + K + + ++ +
Sbjct: 34 FNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETG 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 30,254,560
Number of extensions: 1902868
Number of successful extensions: 4678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4599
Number of HSP's successfully gapped: 97
Length of query: 1949
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1841
Effective length of database: 3,686,325
Effective search space: 6786524325
Effective search space used: 6786524325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.3 bits)