RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2654
(1949 letters)
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain
{Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 34.6 bits (79), Expect = 0.12
Identities = 20/127 (15%), Positives = 32/127 (25%), Gaps = 7/127 (5%)
Query: 1051 GPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISV 1110
GP +GKT L + G N G F++
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFL-----VVFEDVKGTGG 215
Query: 1111 EVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYAGRAELPENLKAL 1170
E + + Q + LD +R + N++ PG E
Sbjct: 216 ESRDLPSGQGINNLD--NLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQ 273
Query: 1171 FRPCAMV 1177
R +
Sbjct: 274 ARFVKQI 280
Score = 29.3 bits (65), Expect = 5.2
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 1438 GPAGTGKTETTKDLGKAIGIMVYVFNCSEQMD 1469
GP +GKT L + G N
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRL 192
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus
thermophilus [TaxId: 274]}
Length = 239
Score = 32.2 bits (72), Expect = 0.44
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 1051 GPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISV 1110
GP G GKT + +G+ + V + I + G DE +R+S
Sbjct: 42 GPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSR 101
Query: 1111 EV 1112
+
Sbjct: 102 QA 103
Score = 32.2 bits (72), Expect = 0.44
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 1438 GPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAWGCFDEFNRISV 1497
GP G GKT + +G+ + V + I + G DE +R+S
Sbjct: 42 GPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSR 101
Query: 1498 EV 1499
+
Sbjct: 102 QA 103
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 31.4 bits (71), Expect = 0.96
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 18/138 (13%)
Query: 1747 EDSFILKVVQLVELFAVRHS-VFIIGFAGTGKSCVWKTLYK--TYVNAKKKPMYNDLEPK 1803
E + ++++ ++ + V I G +G GK V + ++K + P+
Sbjct: 5 ESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 64
Query: 1804 AVTNDELFGIINPS---TREWKDGLFSCLIREQAQSTGDGPKWMVMD--GDIDPMWIESL 1858
+ ELFG + K+G F E A + +D G++ L
Sbjct: 65 DIFEAELFGYEKGAFTGAVSSKEGFF-----ELADG-----GTLFLDEIGELSLEAQAKL 114
Query: 1859 NTVMDDNKVLTLASNERI 1876
V++ K L + I
Sbjct: 115 LRVIESGKFYRLGGRKEI 132
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 31.0 bits (69), Expect = 1.4
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 1051 GPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG---NIYKGLAQTGAWGCFDEFNR 1107
GP G GKTE + L K ++ + G + A G D +
Sbjct: 56 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQ 115
Query: 1108 ISVEVL 1113
+ +
Sbjct: 116 NGIVFI 121
Score = 31.0 bits (69), Expect = 1.4
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 1438 GPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCG---NIYKGLAQTGAWGCFDEFNR 1494
GP G GKTE + L K ++ + G + A G D +
Sbjct: 56 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQ 115
Query: 1495 ISVEVL 1500
+ +
Sbjct: 116 NGIVFI 121
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 114
Score = 28.4 bits (63), Expect = 3.0
Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 11/50 (22%)
Query: 133 KHLMDSVINSLNELKDFIEEADKGLATPLHKGDYEALVKIITYLKKVRDR 182
+ L++L I + L +++ RD+
Sbjct: 73 LKSLQDYRQHLDQLITLISN-----------QQWPELHRLLQQTNGDRDK 111
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin
zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Length = 273
Score = 29.9 bits (66), Expect = 3.0
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 1050 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRS 1085
G G+GKT + + V V +
Sbjct: 38 GGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP 73
Score = 29.9 bits (66), Expect = 3.0
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 1437 AGPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRS 1472
G G+GKT + + V V +
Sbjct: 38 GGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP 73
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III
{Thermus aquaticus [TaxId: 271]}
Length = 275
Score = 29.8 bits (66), Expect = 3.1
Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 8/176 (4%)
Query: 774 MLDWKETLWKKIDSEAMDMELKKFTKELRTLDKDLRNWDIFLQLESEIKNMIAALKAVTE 833
+ E + ELR L + L+ E++ + +
Sbjct: 69 LATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVEDPPLKV 128
Query: 834 LQNPAIRDRHWEELMSVTKVKFSIDDSTTLKDLLDLELYKFEEEVKTIVDKSVKEQQMEK 893
+ IR+ + +L ++ +L + E + + +V +E
Sbjct: 129 SEGGLIREGYDPDLDALRAAHREGVA--YFLELEERERERTGIPTLKVGYNAVFGYYLEV 186
Query: 894 VLKDFDKVWSTLEFEYDIHARTKTPLLRCSEELIEMLEENQINQLNALIVLLLGEL 949
+++V + +T R + ++ E ++ +L ALI E+
Sbjct: 187 TRPYYERV-----PKEYRPVQTLKDRQRYTLPEMKEKER-EVYRLEALIRRREEEV 236
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.9 bits (63), Expect = 3.7
Identities = 9/92 (9%), Positives = 23/92 (25%)
Query: 1767 VFIIGFAGTGKSCVWKTLYKTYVNAKKKPMYNDLEPKAVTNDELFGIINPSTREWKDGLF 1826
+ IG G+GKS + + + + G+
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 1827 SCLIREQAQSTGDGPKWMVMDGDIDPMWIESL 1858
+ ++ D +++P +
Sbjct: 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAW 96
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 29.5 bits (65), Expect = 4.0
Identities = 21/172 (12%), Positives = 40/172 (23%), Gaps = 26/172 (15%)
Query: 1051 GPAGTGKTETTKDLGKAIGIMVYVFNCSEQMDYRSCGNIYKGLAQTGAW----------- 1099
GP +GKT L I + G Q
Sbjct: 47 GPPHSGKTA----LAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 102
Query: 1100 -GCFDEFNRISVEVLSVVAVQVKSVLDSVKMRKSRFNFMGENIKLVTTVGMFITMNPGYA 1158
D+ R+ V + + + K + + + TT +
Sbjct: 103 CVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 162
Query: 1159 GR----------AELPENLKALFRPCAMVVPDFALICEIMLVSEGFQEARLL 1200
A + L+AL + I + + + + + L
Sbjct: 163 NAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKL 214
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA
{Aquifex aeolicus [TaxId: 63363]}
Length = 110
Score = 28.1 bits (62), Expect = 4.2
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 141 NSLNELKDFIEEADKGLATPLHKGDYEALVKIITYLKKVRDR 182
N + ++ F + + L + + E LV+ + +K R
Sbjct: 69 NVMKAIEGFEKSLNH-LKELIVREAEEELVEYLKEVKIKRME 109
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 29.4 bits (65), Expect = 4.6
Identities = 24/167 (14%), Positives = 43/167 (25%), Gaps = 15/167 (8%)
Query: 643 KALAQYLETKKLTYPRFYFVS-----SSDLLDILANGNNPEAFRPGKDGKINVKIAQGMY 697
L + + KL R + ++L+ + N N K + +G
Sbjct: 77 LKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEG 136
Query: 698 AKDGEYVEFNGDCD-------CSGQANKASTEMIEMEDVLNKLMEQAALFEINKPDFKAL 750
+ + D G + + A LF +
Sbjct: 137 DRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSD---LLW 193
Query: 751 ANARKDLKMAKLIWDYILVIQGWMLDWKETLWKKIDSEAMDMELKKF 797
N D I + GW L + L K+ D ++ F
Sbjct: 194 RNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAF 240
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 28.2 bits (61), Expect = 7.1
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 1764 RHSVFIIGFAGTGKSCVWKTLYK 1786
+ ++F++G G GKS + + L +
Sbjct: 2 KRNIFLVGPMGAGKSTIGRQLAQ 24
>d2im8a1 a.24.26.1 (A:1-123) Hypothetical protein YppE {Bacillus
subtilis [TaxId: 1423]}
Length = 123
Score = 27.1 bits (60), Expect = 9.5
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 516 LLRCSEELIEMLEENQVQLQNMASSKFVGYFQKEVNEWQIKLSNADAVISIWIEVQRTWQ 575
LL +E++IE+ E+ + Q +S F + + + D + + W E
Sbjct: 6 LLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPA---VEENDELAARWAEGALELI 62
Query: 576 HLES 579
+
Sbjct: 63 KVRR 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 7,407,206
Number of extensions: 365982
Number of successful extensions: 1276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 37
Length of query: 1949
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1850
Effective length of database: 1,048,326
Effective search space: 1939403100
Effective search space used: 1939403100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)