BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2655
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 11 ISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTN 70
+ +LK+A+KIY AK +ELN + + D F SE+ VDF + AA +N WV + TN
Sbjct: 87 VKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTN 146
Query: 71 DKIKDLI 77
++IK+L+
Sbjct: 147 NRIKNLV 153
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 11 ISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTN 70
+ +LK+A+KIY AK +ELN + + D F SE+ VDF + AA +N WV + TN
Sbjct: 87 VKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTN 146
Query: 71 DKIKDLI 77
++IK+L+
Sbjct: 147 NRIKNLV 153
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
+K+AN ++ +N + FN+E+ VDFSQ A A +N WV N+TN +KD
Sbjct: 6 MKLANSLFVQNGFHVNEEFLQMLKMYFNAEVNHVDFSQNVAVANSINKWVENYTNSLLKD 65
Query: 76 LI 77
L+
Sbjct: 66 LV 67
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
+KIAN ++ +N + FN+ + VDFSQ A A +N WV N+TN+ +KD
Sbjct: 103 MKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAVANYINKWVENNTNNLVKD 162
Query: 76 LI 77
L+
Sbjct: 163 LV 164
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
+KIAN ++ +N + FN+ + VDFSQ A A +N WV N+TN+ +KD
Sbjct: 103 MKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAVANYINKWVENNTNNLVKD 162
Query: 76 LI 77
L+
Sbjct: 163 LV 164
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
+KIAN ++ +N + FN+ + VDFSQ A A +N WV N+TN+ +KD
Sbjct: 103 MKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAVANYINKWVENNTNNLVKD 162
Query: 76 LI 77
L+
Sbjct: 163 LV 164
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
L ANKIY + + +Q AV+ + ++ VDFS+ AAK MN WV T KI++
Sbjct: 91 LHTANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEKNDAAKLMNAWVEEQTQHKIQN 150
Query: 76 LI 77
L+
Sbjct: 151 LV 152
>pdb|2ZV6|A Chain A, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|B Chain B, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
pdb|2ZV6|C Chain C, Crystal Structure Of Human Squamous Cell Carcinoma Antigen
1
Length = 401
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKEMNDWVSNHTNDKI 73
ELKIANK++ K Y + + + VDF+ P + K++N WV + TN+KI
Sbjct: 111 ELKIANKLFGEKTYLFLQEYLDAIKKFYQTSVESVDFANAPEESRKKINSWVESQTNEKI 170
Query: 74 KDLIKAGNL 82
K+LI GN+
Sbjct: 171 KNLIPEGNI 179
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKE 60
FN+ +NY + S AN+IY K L P Y + + +E KV+F + P + KE
Sbjct: 130 FNKPRNNYSLRS-----ANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKE 184
Query: 61 MNDWVSNHTNDKIKDLIKAGNL 82
+N WV T KIK+L+ + ++
Sbjct: 185 INTWVEKQTESKIKNLLSSDDV 206
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKE 60
FN+ +NY + S AN+IY K L P Y + + +E KV+F + P + KE
Sbjct: 110 FNKPRNNYSLRS-----ANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKE 164
Query: 61 MNDWVSNHTNDKIKDLIKAGNL 82
+N WV T KIK+L+ + ++
Sbjct: 165 INTWVEKQTESKIKNLLSSDDV 186
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKE 60
FN+ +NY + S AN+IY K L P Y + + +E KV+F + P + KE
Sbjct: 118 FNKPRNNYSLRS-----ANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKE 172
Query: 61 MNDWVSNHTNDKIKDLIKAGNL 82
+N WV T KIK+L+ + ++
Sbjct: 173 INTWVEKQTESKIKNLLSSDDV 194
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKE 60
FN+ +NY + S AN+IY K L P Y + + +E KV+F + P + KE
Sbjct: 118 FNKPRNNYSLRS-----ANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKE 172
Query: 61 MNDWVSNHTNDKIKDLIKAGNL 82
+N WV T KIK+L+ + ++
Sbjct: 173 INTWVEKQTESKIKNLLSSDDV 194
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKEMNDWVSNHTNDKIK 74
LK+AN++Y K + + +EL VDF Q P A KE+N+WV T KI
Sbjct: 87 LKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINEWVKGQTEGKIP 146
Query: 75 DLIKAG 80
+L+ G
Sbjct: 147 ELLVKG 152
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+L IA + IE+ YQ A ++++ L KV +S P A +N+WVS HTN +++
Sbjct: 105 DLNIATNFFVDDFIEVINKYQQIANTHYHAMLEKVSYSNPTQTAATINNWVSEHTNGRLR 164
Query: 75 DLIKAGNL 82
+++ +L
Sbjct: 165 EIVTPDSL 172
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ A+ I+ +D+EL + F + + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTADAIFVQRDLELVQGFMPHFFKLFQTMVKQVDFSEVERARFIINDWVERHTKGMIN 149
Query: 75 DLIKAG 80
DL+ G
Sbjct: 150 DLLAKG 155
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFS-QPPAAAKEMNDWVSNHTN 70
S+ L +AN + + L +Y++ +F +EL KVDF+ +P AA +N+WV T+
Sbjct: 88 SNSTLDVANAAAIQRTLALLNSYESALQSSFGAELHKVDFAGEPQAAVDFVNNWVKRKTH 147
Query: 71 DKIKDLI 77
DKI+ L
Sbjct: 148 DKIEKLF 154
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
+L+ G
Sbjct: 150 NLLGKG 155
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 3 NQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKEM 61
N+R ++Y LK+AN++Y K P + + ++L VDF A K +
Sbjct: 88 NKRGASYI-----LKLANRLYGEKTYNFLPEFLVSTQKTYGADLASVDFQHASEDARKTI 142
Query: 62 NDWVSNHTNDKIKDLIKAG 80
N WV T KI +L+ +G
Sbjct: 143 NQWVKGQTEGKIPELLASG 161
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
+ +AN ++ E+ + T+ D F E+ V+F P +A +N WV N T D I +
Sbjct: 89 VTVANAVFVKNASEIEVPFVTRNKDVFQCEVRNVNFEDPASACDSINAWVKNETRDMIDN 148
Query: 76 LI 77
L+
Sbjct: 149 LL 150
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 113 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 172
Query: 75 DLIKAG 80
+L+ G
Sbjct: 173 NLLGKG 178
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N +L + N ++ + + L + A + SE DF AA K +ND+
Sbjct: 82 RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDY 141
Query: 65 VSNHTNDKIKDLIK 78
V N T KI DLIK
Sbjct: 142 VKNGTRGKITDLIK 155
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N +L + N ++ + + L + A + SE DF AA K +ND+
Sbjct: 82 RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDY 141
Query: 65 VSNHTNDKIKDLIK 78
V N T KI DLIK
Sbjct: 142 VKNGTRGKITDLIK 155
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N +L + N ++ + + L + A + SE DF AA K +ND+
Sbjct: 82 RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDY 141
Query: 65 VSNHTNDKIKDLIK 78
V N T KI DLIK
Sbjct: 142 VKNGTRGKITDLIK 155
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+L + N ++ + + L + A + SE DF AA K +ND+V N T KI
Sbjct: 122 QLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKIT 181
Query: 75 DLIK 78
DLIK
Sbjct: 182 DLIK 185
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N +L + N ++ + + L + A + SE DF AA K +ND+
Sbjct: 101 RTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDY 160
Query: 65 VSNHTNDKIKDLIK 78
V N T KI DLIK
Sbjct: 161 VKNGTRGKITDLIK 174
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
+L+ G
Sbjct: 150 NLLGKG 155
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+L + N ++ + + L + A + SE DF AA K +ND+V N T KI
Sbjct: 112 QLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRGKIT 171
Query: 75 DLIK 78
DLIK
Sbjct: 172 DLIK 175
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 94 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 153
Query: 75 DLIKAG 80
+L+ G
Sbjct: 154 NLLGKG 159
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
+L+ G
Sbjct: 150 NLLGKG 155
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
+L+ G
Sbjct: 150 NLLGKG 155
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
+L+ G
Sbjct: 150 NLLGKG 155
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
L+ G
Sbjct: 150 HLLGTG 155
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
L+ G
Sbjct: 150 HLLGTG 155
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 86 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 145
Query: 75 DLIKAG 80
L+ G
Sbjct: 146 HLLGTG 151
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 90 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 149
Query: 75 DLIKAG 80
L+ G
Sbjct: 150 HLLGTG 155
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 103 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 162
Query: 75 DLIKAG 80
L+ G
Sbjct: 163 HLLGTG 168
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT I
Sbjct: 88 EISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMIS 147
Query: 75 DLIKAG 80
L+ G
Sbjct: 148 HLLGTG 153
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 13 SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EMNDWVSNHTND 71
S EL AN+++ K I N YQ + + ++L +DF ++ +N W+SN T
Sbjct: 134 SSELVSANRLFGDKSITFNETYQDISEVVYGAKLQPLDFKGNAEQSRLTINQWISNKTEG 193
Query: 72 KIKDLI 77
+I D+I
Sbjct: 194 RITDVI 199
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 76 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 135
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 136 VEKGTQGKIVDLVK 149
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 82 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 141
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 142 VEKGTQGKIVDLVK 155
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 78 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 137
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 138 VEKGTQGKIVDLVK 151
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 86 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 145
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 146 VEKGTQGKIVDLVK 159
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 90 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 149
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 150 VEKGTQGKIVDLVK 163
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 111 RTLNQPDSQLQLTFGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 170
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 171 VEKGTQGKIVDLVK 184
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 86 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 145
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 146 VEKGTQGKIVDLVK 159
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 78 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 137
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 138 VEKGTQGKIVDLVK 151
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 81 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 140
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 141 VEKGTQGKIVDLVK 154
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 101 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 160
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 161 VEKGTQGKIVDLVK 174
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 101 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 160
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 161 VEKGTQGKIVDLVK 174
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 101 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 160
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 161 VEKGTQGKIVDLVK 174
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 131 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 190
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 191 VEKGTQGKIVDLVK 204
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 101 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 160
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 161 VEKGTQGKIVDLVK 174
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 101 RTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 160
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 161 VEKGTQGKIVDLVK 174
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
S +L N ++ ++ ++L + ++SE V+F A K++ND+V T
Sbjct: 108 SQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQG 167
Query: 72 KIKDLIK 78
KI DL+K
Sbjct: 168 KIVDLVK 174
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
S +L N ++ ++ ++L + ++SE V+F A K++ND+V T
Sbjct: 108 SQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQG 167
Query: 72 KIKDLIK 78
KI DL+K
Sbjct: 168 KIVDLVK 174
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
S +L N ++ ++ ++L + ++SE V+F A K++ND+V T
Sbjct: 108 SQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQG 167
Query: 72 KIKDLIK 78
KI DL+K
Sbjct: 168 KIVDLVK 174
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
++ + ++ K ++ +Q +A + +E DF QP A K +ND+V T IK
Sbjct: 112 QISTGSALFIEKRQQILTEFQEKAKTLYQAEAFTADFQQPRQAKKLINDYVRKQTQGMIK 171
Query: 75 DLI 77
+L+
Sbjct: 172 ELV 174
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 5 RPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDW 64
R N S +L N ++ ++ ++L + ++SE V+F A K++ND+
Sbjct: 111 RTLNQPDSQLQLTTGNFLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDY 170
Query: 65 VSNHTNDKIKDLIK 78
V T KI DL+K
Sbjct: 171 VEKGTQGKIVDLVK 184
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE- 60
N R S +L AN+++ K + N YQ + + ++L +DF + ++
Sbjct: 126 LNCRLYRKAAKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAA 185
Query: 61 MNDWVSNHTNDKIKDLI 77
+N WVSN T +I D+I
Sbjct: 186 INKWVSNKTEGRITDVI 202
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE- 60
N R S +L AN+++ K + N YQ + + ++L +DF + ++
Sbjct: 122 LNCRLYRKAAKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAA 181
Query: 61 MNDWVSNHTNDKIKDLI 77
+N WVSN T +I D+I
Sbjct: 182 INKWVSNKTEGRITDVI 198
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 13 SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTND 71
S +L AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T
Sbjct: 137 SSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEG 196
Query: 72 KIKDLI 77
+I D+I
Sbjct: 197 RITDVI 202
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 13 SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTND 71
S +L AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T
Sbjct: 137 SSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEG 196
Query: 72 KIKDLI 77
+I D+I
Sbjct: 197 RITDVI 202
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTN 70
++I+ I+ K E+ + ++ EL +VDFS +A ++NDWV +N
Sbjct: 115 VRISTGIFVEKTYEVERRFNESIANDSEGELKQVDFSNRTSATVDINDWVDQQSN 169
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 13 SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTND 71
S +L AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T
Sbjct: 137 SSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEG 196
Query: 72 KIKDLI 77
+I D+I
Sbjct: 197 RITDVI 202
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 13 SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTND 71
S +L AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T
Sbjct: 133 SSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEG 192
Query: 72 KIKDLI 77
+I D+I
Sbjct: 193 RITDVI 198
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 10 EISSPE----LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM-NDW 64
EI+ P L +A+K+Y + + P Y + + L V F A+E+ N W
Sbjct: 90 EITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSW 149
Query: 65 VSNHTNDKIKDLIKAGNL 82
V TN IK+ ++ G++
Sbjct: 150 VETQTNGVIKNFLQPGSV 167
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKEMNDWVSNHTN 70
P+L +AN + K + P+++ D++ + + DF S+ E+N W TN
Sbjct: 90 GGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAASNQADFQSKAVEVIAEVNSWAEKETN 149
Query: 71 DKIKDLIKAGN 81
I +++ G+
Sbjct: 150 GLITEVLPEGS 160
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 19 ANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTNDKIKDLI 77
AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T +I D+I
Sbjct: 143 ANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVI 202
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 19 ANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTNDKIKDLI 77
AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T +I D+I
Sbjct: 143 ANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVI 202
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 19 ANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTNDKIKDLI 77
AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T +I D+I
Sbjct: 143 ANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVI 202
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 19 ANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTNDKIKDLI 77
AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T +I D+I
Sbjct: 143 ANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVI 202
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 19 ANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE-MNDWVSNHTNDKIKDLI 77
AN+++ K + N YQ + + ++L +DF + ++ +N WVSN T +I D+I
Sbjct: 154 ANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVI 213
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
EL+I N ++ K ++ + + +E+ DFS AA +E+N V T K+
Sbjct: 96 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVV 155
Query: 75 DLIK 78
LI+
Sbjct: 156 GLIQ 159
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
EL+I N ++ K ++ + + +E+ DFS AA +E+N V T K+
Sbjct: 95 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVV 154
Query: 75 DLIK 78
LI+
Sbjct: 155 GLIQ 158
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
EL+I N ++ K ++ + + +E+ DFS AA +E+N V T K+
Sbjct: 91 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVV 150
Query: 75 DLIK 78
LI+
Sbjct: 151 GLIQ 154
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
EL+I N ++ K ++ + + +E+ DFS AA +E+N V T K+
Sbjct: 96 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVV 155
Query: 75 DLIK 78
LI+
Sbjct: 156 GLIQ 159
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
EL+I N ++ K ++ + + +E+ DFS AA +E+N V T K+
Sbjct: 90 ELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKGKVV 149
Query: 75 DLIK 78
LI+
Sbjct: 150 GLIQ 153
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+L + N ++ ++L + + + ++ +F A K++ND+V+ T KI
Sbjct: 83 QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIV 142
Query: 75 DLIK 78
DL+K
Sbjct: 143 DLLK 146
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+L + N ++ ++L + + + ++ +F A K++ND+V+ T KI
Sbjct: 115 QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIV 174
Query: 75 DLIK 78
DL+K
Sbjct: 175 DLLK 178
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+L + N ++ ++L + + + ++ +F A K++ND+V+ T KI
Sbjct: 90 QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIV 149
Query: 75 DLIK 78
DL+K
Sbjct: 150 DLLK 153
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+L + N ++ ++L + + + ++ +F A K++ND+V+ T KI
Sbjct: 97 QLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKGKIV 156
Query: 75 DLIK 78
DL+K
Sbjct: 157 DLLK 160
>pdb|1SNG|A Chain A, Structure Of A Thermophilic Serpin In The Native State
Length = 370
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 13 SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EMNDWVSNHTND 71
SP+L ++ + D+ + +++ D +S++ DF P + +N +++ T
Sbjct: 82 SPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRG 141
Query: 72 KIKDLIKAGNLT 83
I++L+ G +T
Sbjct: 142 MIRELLPQGAVT 153
>pdb|1MTP|A Chain A, The X-Ray Crystal Structure Of A Serpin From A
Thermophilic Prokaryote
Length = 323
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 13 SPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAK-EMNDWVSNHTND 71
SP+L ++ + D+ + +++ D +S++ DF P + +N +++ T
Sbjct: 78 SPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRATVNADIADATRG 137
Query: 72 KIKDLIKAGNLT 83
I++L+ G +T
Sbjct: 138 MIRELLPQGAVT 149
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM-NDWVSNHTNDKIK 74
+A+++Y + + P Y + + L ++F A+E+ N WV + TN I+
Sbjct: 100 FSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIR 159
Query: 75 DLIK 78
++++
Sbjct: 160 NVLQ 163
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM-NDWVSNHTNDKIK 74
+A+++Y + + P Y + + L ++F A+E+ N WV + TN I+
Sbjct: 100 FSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIR 159
Query: 75 DLIK 78
++++
Sbjct: 160 NVLQ 163
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM-NDWVSNHTNDKIK 74
+A+++Y + + P Y + + L ++F A+E+ N WV + TN I+
Sbjct: 99 FSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIR 158
Query: 75 DLIK 78
++++
Sbjct: 159 NVLQ 162
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM-NDWVSNHTNDKIK 74
+A+++Y + + P Y + + L ++F A+E+ N WV + TN I+
Sbjct: 99 FSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIR 158
Query: 75 DLIK 78
++++
Sbjct: 159 NVLQ 162
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM-NDWVSNHTNDKIK 74
+A+++Y + + P Y + + L ++F A+E+ N WV + TN I+
Sbjct: 100 FSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIR 159
Query: 75 DLIK 78
++++
Sbjct: 160 NVLQ 163
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
+++A +IY K + + Q+ F ++ K+ Q A +N WV T KI+D
Sbjct: 99 IRLAARIYLQKGFPIKDDFLEQSERLFGAKPVKLTGKQEEDLAN-INQWVKEATEGKIED 157
Query: 76 LI 77
+
Sbjct: 158 FL 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,587,361
Number of Sequences: 62578
Number of extensions: 87260
Number of successful extensions: 342
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 95
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)