RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2655
(84 letters)
>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca
sexta} SCOP: e.1.1.1 PDB: 1k9o_I
Length = 378
Score = 89.6 bits (223), Expect = 3e-23
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+LK+A+KIY AK +ELN + + D F SE+ VDF + AA +N WV + TN+
Sbjct: 88 KGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNN 147
Query: 72 KIKDLIKAGNLT 83
+IK+L+ L
Sbjct: 148 RIKNLVDPDALD 159
>3ozq_A Serpin48; SPE, hydrolase I; 1.90A {Tenebrio molitor}
Length = 376
Score = 88.8 bits (221), Expect = 5e-23
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
L ANKIY + + +Q AV+ + ++ VDFS+ AAK MN WV T
Sbjct: 87 EEYTLHTANKIYVKTNFSVREEFQKIAVEVYGAQSENVDFSEKNDAAKLMNAWVEEQTQH 146
Query: 72 KIKDLIKAGNLT 83
KI++L+ L
Sbjct: 147 KIQNLVDPEILN 158
>3f5n_A Neuroserpin; cleaved form, fenib, human, tissue PLAS activator,
hydrolase inhibitor; 3.15A {Homo sapiens}
Length = 407
Score = 87.7 bits (218), Expect = 2e-22
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
S +KIAN ++ +N + FN+ + VDFSQ A A +N WV N+TN+
Sbjct: 99 SQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAVANYINKWVENNTNN 158
Query: 72 KIKDLIKAGNLT 83
+KDL+ +
Sbjct: 159 LVKDLVSPRDFD 170
>1lj5_A Plasminogen activator inhibitor-1; beta-barrell, blood clotting;
1.80A {Homo sapiens} SCOP: e.1.1.1 PDB: 1dvn_A 1c5g_A
1a7c_A* 3q02_A 3q03_A 3r4l_A* 1oc0_A 1b3k_A 3pb1_I
1dvm_A 3eox_A 3cvm_A 1db2_A 9pai_A 3lw2_A 9pai_B
Length = 379
Score = 86.9 bits (216), Expect = 3e-22
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+ E+ + I+ +D++L + F S + +VDFS+ A +NDWV HT
Sbjct: 87 NKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKG 146
Query: 72 KIKDLIKAGNLT 83
I +L+ G +
Sbjct: 147 MISNLLGKGAVD 158
>3pzf_A Serpin 2; protease inhibitor, melanization, hydrolase inhibito;
1.75A {Anopheles gambiae}
Length = 397
Score = 86.9 bits (216), Expect = 3e-22
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+L IA + IE+ YQ A ++++ L KV +S P A +N+WVS HTN
Sbjct: 102 KDYDLNIATNFFVDDFIEVINKYQQIANTHYHAMLEKVSYSNPTQTAATINNWVSEHTNG 161
Query: 72 KIKDLIKAGNLT 83
++++++ +L
Sbjct: 162 RLREIVTPDSLE 173
>3f02_A Neuroserpin; cleaved form, fenib, human, disease MUT glycoprotein,
protease inhibitor, secreted, serine protease inhibitor,
hydrolase inhibitor; 1.80A {Homo sapiens} PDB: 3fgq_A
1jjo_C 1jjo_A
Length = 359
Score = 85.8 bits (213), Expect = 6e-22
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
S +KIAN ++ +N + FN+ + VDFSQ A A +N WV N+TN+
Sbjct: 99 SQYVMKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVAVANYINKWVENNTNN 158
Query: 72 KIKDLIKAGNLT 83
+KDL+ +
Sbjct: 159 LVKDLVSPRDFD 170
>4dy0_A GLIA-derived nexin; serpin, protease inhibitor, thrombin, cell
surface, hydrolas inhibitor; HET: IDS SGN; 2.35A {Homo
sapiens} PDB: 4dy7_C
Length = 379
Score = 85.8 bits (213), Expect = 8e-22
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+ + +AN ++ E+ + T+ D F E+ V+F P +A +N WV N T D
Sbjct: 85 NKDIVTVANAVFVKNASEIEVPFVTRNKDVFQCEVRNVNFEDPASACDSINAWVKNETRD 144
Query: 72 KIKDLIKAGNLT 83
I +L+ +
Sbjct: 145 MIDNLLSPDLID 156
>1mtp_A Serine proteinase inhibitor (serpin), chain A; structural genomics,
protease inhibitor; 1.50A {Thermobifida fusca} SCOP:
e.1.1.1
Length = 323
Score = 83.8 bits (208), Expect = 2e-21
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKE 60
++ ++ SP+L ++ + D+ + +++ D +S++ DF + P
Sbjct: 71 LDRAVTD----SPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRAT 126
Query: 61 MNDWVSNHTNDKIKDLIKAGNLT 83
+N +++ T I++L+ G +T
Sbjct: 127 VNADIADATRGMIRELLPQGAVT 149
>1sng_A COG4826: serine protease inhibitor; serine protease inhibitor
(serpin), native state., hydrolase inhibitor; 1.76A
{Thermobifida fusca} SCOP: e.1.1.1
Length = 370
Score = 83.8 bits (208), Expect = 3e-21
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDF-SQPPAAAKE 60
++ ++ SP+L ++ + D+ + +++ D +S++ DF + P
Sbjct: 75 LDRAVTD----SPDLASRTVLWVSADVPVRSSFRATMHDRPDSDVRTADFRTNPEGVRAT 130
Query: 61 MNDWVSNHTNDKIKDLIKAGNLT 83
+N +++ T I++L+ G +T
Sbjct: 131 VNADIADATRGMIRELLPQGAVT 153
>3le2_A Serpin-ZX; apoplast, glycoprotein, protease inhibitor, secreted,
serine protease inhibitor, hydrolase; 2.20A {Arabidopsis
thaliana}
Length = 393
Score = 83.9 bits (208), Expect = 4e-21
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKEMNDWVSNHTN 70
P+L +AN + K + P+++ D++ + + DF E+N W TN
Sbjct: 90 GGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAASNQADFQSKAVEVIAEVNSWAEKETN 149
Query: 71 DKIKDLIKAGNLT 83
I +++ G+
Sbjct: 150 GLITEVLPEGSAD 162
>3kcg_I Antithrombin-III, ATIII; michaelis complex, blood coagulation,
calcium, disulfide bond, EGF-like domain, glycoprotein,
hemophilia, hydrolase; HET: NAG FUC MAN NTP; 1.70A {Homo
sapiens} PDB: 1e04_I* 1ath_A 1ant_L* 1br8_L 1azx_I*
1dzh_L* 1e03_L* 1dzg_L* 1e05_L* 1jvq_L* 1lk6_L* 1nq9_I*
1oyh_L* 1r1l_L* 1sr5_A* 2ant_L* 2beh_L* 2hij_L* 2znh_A*
3evj_I* ...
Length = 432
Score = 83.9 bits (208), Expect = 5e-21
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKE 60
N R + +L AN+++ K + N YQ + + ++L +DF + +
Sbjct: 126 LNCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAA 185
Query: 61 MNDWVSNHTNDKIKDLIKAGNLT 83
+N WVSN T +I D+I + +
Sbjct: 186 INKWVSNKTEGRITDVIPSEAIN 208
>1wz9_A Maspin precursor; serpin, tumor suppressor, serpinb5, signaling
protein; HET: CME; 2.10A {Homo sapiens} PDB: 1xu8_A
1xqg_A 1xqj_A
Length = 375
Score = 83.0 bits (206), Expect = 7e-21
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKEMNDWVSNHTN 70
S LK+ ++Y K + L+ + + + EL VDF ++N+ + + T+
Sbjct: 82 SFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTD 141
Query: 71 DKIKDLIKAGNLT 83
++++ ++
Sbjct: 142 GHFENILADNSVN 154
>3sto_A Serine protease inhibitor; serpin fold, hydrolase inhibitor; 2.41A
{Schistosoma haematobium}
Length = 406
Score = 82.7 bits (205), Expect = 1e-20
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
++I+ I+ K E+ + ++ EL +VDFS +A ++NDWV +N
Sbjct: 111 EENVVRISTGIFVEKTYEVERRFNESIANDSEGELKQVDFSNRTSATVDINDWVDQQSNG 170
Query: 72 KIKDLIKAG 80
++
Sbjct: 171 LLEKFFTDD 179
>3f1s_A Protein Z-dependent protease inhibitor; PZ, ZPI, complex, serpin,
protease inhibitor, protease, GLYC secreted, serine
protease inhibitor, blood coagulation; HET: FLC NAG;
2.30A {Homo sapiens} PDB: 3h5c_A*
Length = 385
Score = 82.3 bits (204), Expect = 1e-20
Identities = 13/67 (19%), Positives = 27/67 (40%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
L + + KD ++ + + F++E ++F A + MN +++ T
Sbjct: 97 LELGLTQGSFAFIHKDFDVKETFFNLSKRYFDTECVPMNFRNASQAKRLMNHYINKETRG 156
Query: 72 KIKDLIK 78
KI L
Sbjct: 157 KIPKLFD 163
>2arr_A Plasminogen activator inhibitor-2; serpin, peptide binding,
hydrolase inhibitor-PEPT complex; 1.55A {Homo sapiens}
PDB: 2arq_A 1jrr_A 1by7_A
Length = 382
Score = 82.3 bits (204), Expect = 1e-20
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKEMNDWVSNHTN 70
+ L+ NK++ K Y ++SE VDF + A K++N WV T
Sbjct: 86 GNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTK 145
Query: 71 DKIKDLIKAGNLT 83
KI +L+ G++
Sbjct: 146 GKIPNLLPEGSVD 158
>4au2_A HSP47, serpin peptidase inhibitor, clade H (heat shock P 47),
member 1, (collagen binding...; chaperone-peptide
complex; 2.30A {Canis lupus familiaris} PDB: 4au3_A
4au4_A 4awr_A 4au3_B
Length = 392
Score = 82.3 bits (204), Expect = 2e-20
Identities = 14/77 (18%), Positives = 36/77 (46%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 61
+ SN + K+ +++Y + + + ++N E K++F +A + +
Sbjct: 80 LLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRSALQSI 139
Query: 62 NDWVSNHTNDKIKDLIK 78
N+W + T+ K+ ++ K
Sbjct: 140 NEWAAQTTDGKLPEVTK 156
>2h4r_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 2.70A {Gallus
gallus} PDB: 2dut_A
Length = 415
Score = 82.0 bits (203), Expect = 2e-20
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQ-PPAAAKEMNDWVSNHTN 70
++ L+ AN+IY K L P Y + + +E KV+F P + KE+N WV T
Sbjct: 115 NNYSLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQTE 174
Query: 71 DKIKDLIKAGNLT 83
KIK+L+ + ++
Sbjct: 175 SKIKNLLSSDDVK 187
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood
coagulation, cleavage of basic residues, disease
mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens}
PDB: 2ol2_A*
Length = 395
Score = 81.5 bits (202), Expect = 3e-20
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+L + N ++ ++L + + + ++ +F A K++ND+V+ T
Sbjct: 112 DGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKG 171
Query: 72 KIKDLIK 78
KI DL+K
Sbjct: 172 KIVDLLK 178
>1hle_A Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine
proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Length = 345
Score = 80.8 bits (200), Expect = 4e-20
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 1 MFNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAK 59
N+ + Y LK+AN++Y K + + +EL VDF Q P A K
Sbjct: 77 DINKPGAPYI-----LKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARK 131
Query: 60 EMNDWVSNHTNDKIKDLIKAGNLT 83
E+N+WV T KI +L+ G +
Sbjct: 132 EINEWVKGQTEGKIPELLVKGMVD 155
>2vdx_A Corticosteroid-binding globulin; transport protein, cortisol
binding globulin, glycoprotein, lipid-binding, disease
mutation, CBG, SERP cleaved; 1.84A {Homo sapiens} PDB:
2vdy_A*
Length = 373
Score = 81.1 bits (201), Expect = 4e-20
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+S E+ + N ++ +EL ++ + SE+ ++F A++++N +V N T
Sbjct: 89 TSLEMTMGNALFLDGSLELLESFSADIKHYYESEVLAMNFQDWATASRQINSYVKNKTQG 148
Query: 72 KIKDLIKA 79
KI DL
Sbjct: 149 KIVDLFSG 156
>2ceo_A Thyroxine-binding globulin; transport, serpin, hormone trans
thyroxine, disease mutation, glycoprotein; HET: T44;
2.80A {Homo sapiens}
Length = 379
Score = 80.8 bits (200), Expect = 5e-20
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
EL+I N ++ K ++ + + +E+ DFS AA +E+N V T
Sbjct: 88 KELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKG 147
Query: 72 KIKDLIK 78
K+ LI+
Sbjct: 148 KVVGLIQ 154
>1uhg_A Ovalbumin, S-ovalbumin; allergen, egg white protein, serpin; HET:
SEP NAG; 1.90A {Gallus gallus} SCOP: e.1.1.1 PDB:
1ova_A* 1jti_A
Length = 385
Score = 80.8 bits (200), Expect = 5e-20
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 8 NYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKEMNDWVS 66
+A+++Y + + P Y + + L ++F A + +N WV
Sbjct: 91 TKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVE 150
Query: 67 NHTNDKIKDLIKAGNLT 83
+ TN I+++++ ++
Sbjct: 151 SQTNGIIRNVLQPSSVD 167
>2h4p_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus
gallus} PDB: 2h4q_A
Length = 394
Score = 80.5 bits (199), Expect = 7e-20
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 1 MFNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQ-PPAAAK 59
FN+ +NY L+ AN+IY K L P Y + + +E KV+F P + K
Sbjct: 129 AFNKPRNNYS-----LRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRK 183
Query: 60 EMNDWVSNHTNDKIKDLIKAGNLT 83
E+N WV T KIK+L+ + ++
Sbjct: 184 EINTWVEKQTESKIKNLLSSDDVK 207
>1qmn_A AACT, alpha-1-antichymotrypsin; serpin, serine proteinase
inhibitor, partial loop insertion, loop-sheet
polymerization, emphysema, disease mutation; 2.27A {Homo
sapiens} SCOP: e.1.1.1 PDB: 3dlw_A
Length = 401
Score = 80.8 bits (200), Expect = 7e-20
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+L + N ++ + + L + A + SE DF AA K +ND+V N T
Sbjct: 109 DELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRG 168
Query: 72 KIKDLIK 78
KI DLIK
Sbjct: 169 KITDLIK 175
>2v95_A Corticosteroid-binding globulin; transport protein, CBG, RCL,
serpin, secreted, transport, glycoprotein,
lipid-binding, glucocorticoids; HET: HCY; 1.93A {Rattus
norvegicus}
Length = 371
Score = 80.3 bits (199), Expect = 7e-20
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MFNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE 60
+ Q + E + + N ++ + ++L ++ + SE +DF A+++
Sbjct: 82 LLKQSDTGLE-----MNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFEDWTKASQQ 136
Query: 61 MNDWVSNHTNDKIKDLIK 78
+N V + T KI+ +
Sbjct: 137 INQHVKDKTQGKIEHVFS 154
>3dy0_A N-terminus plasma serine protease inhibitor; serpin, blood
clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo
sapiens} PDB: 1lq8_A* 2hi9_A*
Length = 336
Score = 79.9 bits (198), Expect = 7e-20
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+L + N ++ ++L + + + ++ +F A K++ND+V+ T
Sbjct: 87 DGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKG 146
Query: 72 KIKDLIK 78
KI DL+K
Sbjct: 147 KIVDLLK 153
>3ne4_A Alpha-1-antitrypsin; serpin, LUNG disease, liver disease,
polymerisation, hydrolase inhibitor; 1.81A {Homo
sapiens} PDB: 1qlp_A 2qug_A 3cwl_A 3cwm_A* 1psi_A 3drm_A
1kct_A 3dru_A 1hp7_A 1iz2_A* 1oph_A 1oo8_A 1atu_A 1d5s_B
1qmb_B
Length = 424
Score = 80.4 bits (199), Expect = 9e-20
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
S +L N ++ ++ ++L + ++SE V+F A K++ND+V T
Sbjct: 138 SQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQG 197
Query: 72 KIKDLIK 78
KI DL+K
Sbjct: 198 KIVDLVK 204
>1as4_A Antichymotrypsin, ACT; serpin, serine protease inhibitor; 2.10A
{Homo sapiens} SCOP: e.1.1.1 PDB: 2ach_A* 4caa_A 3caa_A
Length = 341
Score = 79.9 bits (198), Expect = 9e-20
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+L + N ++ + + L + A + SE DF AA K +ND+V N T
Sbjct: 89 DELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKNGTRG 148
Query: 72 KIKDLIK 78
KI DLIK
Sbjct: 149 KITDLIK 155
>1yxa_A Serine (OR cysteine) proteinase inhibitor, clade 3N; serpin,
antichymotrypsin, protease inhibitor, reactive centr
plasma, hydrolase inhibitor; 2.10A {Mus musculus}
Length = 398
Score = 80.0 bits (198), Expect = 1e-19
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
++ + ++ K ++ +Q +A + +E DF QP A K +ND+V T
Sbjct: 109 DQVQISTGSALFIEKRQQILTEFQEKAKTLYQAEAFTADFQQPRQAKKLINDYVRKQTQG 168
Query: 72 KIKDLIK 78
IK+L+
Sbjct: 169 MIKELVS 175
>3ndd_A Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo
sapiens} PDB: 3ndf_A 7api_A* 8api_A* 9api_A* 1d5s_A
1ezx_A 3t1p_A 2d26_A 1qmb_A
Length = 343
Score = 79.2 bits (196), Expect = 1e-19
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
S +L N ++ ++ ++L + ++SE V+F A K++ND+V T
Sbjct: 93 SQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQG 152
Query: 72 KIKDLIK 78
KI DL+K
Sbjct: 153 KIVDLVK 159
>2xn6_A Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y
T44; 1.29A {Homo sapiens} PDB: 2xn7_A* 2xn5_A* 2riv_A
2xn3_A* 2riw_A*
Length = 350
Score = 79.2 bits (196), Expect = 1e-19
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
EL+I N ++ K ++ + + +E+ DFS AA +E+N V T
Sbjct: 93 KELELQIGNALFIGKHLKPLAKFLNDVKTLYETEVFSTDFSNISAAKQEINSHVEMQTKG 152
Query: 72 KIKDLIK 78
K+ LI+
Sbjct: 153 KVVGLIQ 159
>3nda_A Serpin-2; vaccination target, TICK, hydrolase inhibitor; HET: 1PE;
1.80A {Ixodes ricinus}
Length = 377
Score = 79.5 bits (197), Expect = 1e-19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 1 MFNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAK 59
PSN L +AN + + L +Y++ +F +EL KVDF+ P AA
Sbjct: 82 RLKSTPSNST-----LDVANAAAIQRTLALLNSYESALQSSFGAELHKVDFAGEPQAAVD 136
Query: 60 EMNDWVSNHTNDKIKDLIKAG 80
+N+WV T+DKI+ L
Sbjct: 137 FVNNWVKRKTHDKIEKLFNEP 157
>2zv6_A Serpin B3; serine proteinase inhibitor, reactive site loop,
acetylation, alternative splicing, cytoplasm,
polymorphism, protease inhibitor; 2.70A {Homo sapiens}
Length = 401
Score = 79.3 bits (196), Expect = 2e-19
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 8 NYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKEMNDWVS 66
N + ELKIANK++ K Y + + + VDF+ P + K++N WV
Sbjct: 104 NKSTDAYELKIANKLFGEKTYLFLQEYLDAIKKFYQTSVESVDFANAPEESRKKINSWVE 163
Query: 67 NHTNDKIKDLIKAGNLT 83
+ TN+KIK+LI GN+
Sbjct: 164 SQTNEKIKNLIPEGNIG 180
>2pef_A Serine protease inhibitor; serpin; 1.60A {Thermoanaerobacter
tengcongensis} PDB: 2vh4_A 2pee_A
Length = 373
Score = 77.2 bits (191), Expect = 1e-18
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 12 SSPELKIANKIYFA-KDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTN 70
+L IAN I+F D + + D + +++ K F + ++N+WV + TN
Sbjct: 85 EKSKLTIANSIWFKENDFMPSKDFLQIIADYYKADIFKAAFDS--STVSDINNWVKSKTN 142
Query: 71 DKIKDLIKA 79
I ++
Sbjct: 143 GMIDKILNK 151
>2oay_A C1-inhibitor, plasma protease C1 inhibitor, C1 INH, C1INH; latent
serpin, RCL insertion, immune system,hydrolase inhibi;
HET: NAG; 2.35A {Homo sapiens}
Length = 390
Score = 76.9 bits (190), Expect = 1e-18
Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 10 EISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHT 69
++ + ++I+ + D+ + + + ++S + A + +N WV+ +T
Sbjct: 102 GFTTKGVTSVSQIFHSPDLAIRDTFVNASRTLYSSSPRVLSN-NSDANLELINTWVAKNT 160
Query: 70 NDKIKDLIK 78
N+KI L+
Sbjct: 161 NNKISRLLD 169
>2r9y_A Alpha-2-antiplasmin; inhibitory serpin, plasmin inhibitor, AC
phase, glycoprotein, protease inhibitor, secreted,
serine P inhibitor, sulfation; 2.65A {Mus musculus}
Length = 430
Score = 76.2 bits (188), Expect = 3e-18
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 1 MFNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKE 60
F Q +++A +IY K + + Q+ F ++ K+ +
Sbjct: 89 HFYQNLGPGT-----IRLAARIYLQKGFPIKDDFLEQSERLFGAKPVKLTG-KQEEDLAN 142
Query: 61 MNDWVSNHTNDKIKDLIK 78
+N WV T KI+D +
Sbjct: 143 INQWVKEATEGKIEDFLS 160
>1imv_A PEDF, pigment epithelium-derived factor; serpin, angiogenesis,
signaling protein; HET: NAG; 2.85A {Homo sapiens} SCOP:
e.1.1.1
Length = 398
Score = 75.0 bits (185), Expect = 7e-18
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 10 EISSP--ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 67
+++P LK A++I F K + + ++ ++ + + + P +E+N+WV
Sbjct: 108 TVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGN-PRLDLQEINNWVQA 166
Query: 68 HTNDKIKDLIK 78
K+ K
Sbjct: 167 QMKGKLARSTK 177
>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
protease, inhibition, inhibitor, blood CLO; HET: TYS NDG
NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A*
Length = 480
Score = 74.3 bits (183), Expect = 1e-17
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
L+ N +Y K + ++T+ + + +E DFS P +K N+ + T
Sbjct: 195 FGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISK-TNNHIMKLTKG 253
Query: 72 KIKDLIK 78
IKD ++
Sbjct: 254 LIKDALE 260
>2wxw_A Angiotensinogen, serpin A8; glycoprotein, hypertension,
vasoconstrictor, renin, serpins, vasoactive, hormone;
3.30A {Homo sapiens} PDB: 2x0b_B
Length = 453
Score = 74.4 bits (183), Expect = 1e-17
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGK-VDFSQPPAAAKEMNDWVSNHTNDKI 73
L ++ A + L + L + +DF++ AA++++ ++ T K
Sbjct: 172 LLSTVVGVFTAPGLHLKQPFVQGLALYTPVVLPRSLDFTELDVAAEKIDRFMQAVTGWKT 231
Query: 74 KDLIKAGN 81
+ +
Sbjct: 232 GCSLMGAS 239
>1m93_B Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE
inhibitor, viral protein; 1.65A {Cowpox virus} SCOP:
e.1.1.1
Length = 245
Score = 70.2 bits (173), Expect = 1e-16
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 5/66 (7%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
K NK+Y ++ VDF+ +N V T KI
Sbjct: 3 SFKSMNKVYGRYSAVFKDSFL----RKIGDNFQTVDFTDS-RTVDAINKSVDIFTEGKIN 57
Query: 75 DLIKAG 80
L+
Sbjct: 58 PLLDEP 63
>1f0c_A ICE inhibitor; apoptosis, caspase inhibitor, protease inhibitor,
serpin, viral protein; 2.26A {Cowpox virus} SCOP:
e.1.1.1 PDB: 1c8o_A
Length = 305
Score = 69.2 bits (170), Expect = 6e-16
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
K NK+Y ++ VDF+ +N V T KI
Sbjct: 58 SFKSMNKVYGRYSAVFKDSFL----RKIGDNFQTVDFTDC-RTVDAINKCVDIFTEGKIN 112
Query: 75 DLIK 78
L+
Sbjct: 113 PLLD 116
>2wxy_C Angiotensinogen, serpin A8; glycoprotein, hypertension,
vasoconstrictor, renin, serpins, vasoactive, hormone;
2.10A {Mus musculus} PDB: 2wxx_A 2wy0_C 2wxz_A 2wxz_C
2wy1_A
Length = 453
Score = 69.0 bits (169), Expect = 1e-15
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGK-VDFSQ-PPAAAKEMNDWVSNHTNDK 72
I ++ A L ++ + + +D S P A +++N ++ T K
Sbjct: 170 LQSIVVGLFTAPGFRLKHSFVQSLALFTPALFPRSLDLSTDPVLATEKINRFIKAVTGWK 229
Query: 73 IKDLIKA 79
+ ++
Sbjct: 230 MNLPLEG 236
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 26.0 bits (58), Expect = 1.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 17 KIANKIYFAKDIELNPAYQTQ 37
+A +IY A +E + +
Sbjct: 437 ILAKEIYRAGRVEFSDTAKNA 457
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 25.6 bits (57), Expect = 2.4
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 17 KIANKIYFAKDIELNPAYQTQ 37
KIA +IY A +
Sbjct: 451 KIATEIYGADGVNYTAEADKA 471
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.0 bits (51), Expect = 7.3
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 57 AAKEMNDWVSNHTNDKIKDLIKAGN 81
A K++ +W ++++ + K N
Sbjct: 116 AKKDLEEWNQRQ-SEQV-EKNKINN 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,250,989
Number of extensions: 59825
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 49
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)