RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2655
(84 letters)
>g1jjo.1 e.1.1.1 (A:,C:,E:) Neuroserpin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 334
Score = 69.8 bits (170), Expect = 1e-16
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 15 ELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIK 74
+K+AN ++ +N + FN+E+ VDFSQ A A +N WV N+TN +K
Sbjct: 45 VMKLANSLFVQNGFHVNEEFLQMLKMYFNAEVNHVDFSQNVAVANSINKWVENYTNSLLK 104
Query: 75 DLIKAGNLT 83
DL+ +
Sbjct: 105 DLVSPEDFD 113
>d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm
(Manduca sexta) [TaxId: 7130]}
Length = 376
Score = 56.8 bits (136), Expect = 8e-12
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 10 EISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHT 69
+ +LK+A+KIY AK +ELN + + D F SE+ VDF + AA +N WV + T
Sbjct: 84 AVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQT 143
Query: 70 NDKIKDLIKAGNLT 83
N++IK+L+ L
Sbjct: 144 NNRIKNLVDPDALD 157
>d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]}
Length = 385
Score = 51.8 bits (123), Expect = 5e-10
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKEMNDWVSNHTN 70
+A+++Y + + P Y + + L ++F A + +N WV + TN
Sbjct: 95 DVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTN 154
Query: 71 DKIKDLIKAGNLT 83
I+++++ ++
Sbjct: 155 GIIRNVLQPSSVD 167
>d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 372
Score = 50.6 bits (120), Expect = 1e-09
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 8 NYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 67
N S +L N ++ ++ ++L + ++SE V+F A K++ND+V
Sbjct: 82 NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEK 141
Query: 68 HTNDKIKDLIK 78
T KI DL+K
Sbjct: 142 GTQGKIVDLVK 152
>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 381
Score = 48.7 bits (115), Expect = 5e-09
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 8 NYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPP-AAAKEMNDWVS 66
N + L+ NK++ K Y ++SE VDF + A K++N WV
Sbjct: 81 NASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVK 140
Query: 67 NHTNDKIKDLIKAGNLT 83
T KI +L+ G++
Sbjct: 141 TQTKGKIPNLLPEGSVD 157
>g1hle.1 e.1.1.1 (A:,B:) Elastase inhibitor {Horse (Equus caballus)
[TaxId: 9796]}
Length = 375
Score = 47.2 bits (111), Expect = 2e-08
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKEMNDWVSNHTN 70
+ LK+AN++Y K + + +EL VDF Q P A KE+N+WV T
Sbjct: 82 APYILKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINEWVKGQTE 141
Query: 71 DKIKDLIKAGNLT 83
KI +L+ G +
Sbjct: 142 GKIPELLVKGMVD 154
>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 426
Score = 47.1 bits (111), Expect = 2e-08
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKE 60
N R + +L AN+++ K + N YQ + + ++L +DF + +
Sbjct: 121 LNCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAA 180
Query: 61 MNDWVSNHTNDKIKDLIKAGNLT 83
+N WVSN T +I D+I + +
Sbjct: 181 INKWVSNKTEGRITDVIPSEAIN 203
>d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 379
Score = 46.4 bits (109), Expect = 3e-08
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 8 NYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 67
+ E+ + I+ +D++L + F S + +VDFS+ A +NDWV
Sbjct: 83 MGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKT 142
Query: 68 HTNDKIKDLIKAGNLT 83
HT I +L+ G +
Sbjct: 143 HTKGMISNLLGKGAVD 158
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 46.0 bits (108), Expect = 4e-08
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 2 FNQRPSNYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEM 61
+ + LK A++I F K + + ++ ++ + +V P +E+
Sbjct: 87 YKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRP-RVLTGNPRLDLQEI 145
Query: 62 NDWVSNHTNDKIKDLI 77
N+WV K+
Sbjct: 146 NNWVQAQMKGKLARST 161
>g1as4.1 e.1.1.1 (A:,B:) Antichymotrypsin, alpha-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 369
Score = 44.1 bits (103), Expect = 2e-07
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 8 NYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSN 67
N +L + N ++ + + L + A + SE DF AA K +ND+V N
Sbjct: 80 NQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSAAAKKLINDYVKN 139
Query: 68 HTNDKIKDLIK 78
T KI DLIK
Sbjct: 140 GTRGKITDLIK 150
>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 358
Score = 43.7 bits (102), Expect = 4e-07
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
+L + N ++ ++L + + + ++ +F A K++ND+V+ T
Sbjct: 79 DGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLADTFPTNFRDSAGAMKQINDYVAKQTKG 138
Query: 72 KIKDLIKAGN 81
KI DL+K +
Sbjct: 139 KIVDLLKNLD 148
>d1jmja_ e.1.1.1 (A:) Heparin cofactor II (Hc-II, leuserpin 2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 420
Score = 41.8 bits (97), Expect = 1e-06
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 12 SSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTND 71
L+ N +Y K + ++T+ + + +E DFS P +K N+ + T
Sbjct: 135 FGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISK-TNNHIMKLTKG 193
Query: 72 KIKDLIK 78
IKD ++
Sbjct: 194 LIKDALE 200
>g1m93.1 e.1.1.1 (A:,B:,C:) Viral serpin crmA (cytokine response
modifier protein) {Cowpox virus [TaxId: 10243]}
Length = 322
Score = 40.9 bits (95), Expect = 3e-06
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 16 LKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKD 75
K NK+Y ++ + DNF + VDF+ +N V T KI
Sbjct: 50 FKSMNKVYGRYSAVFKDSFLRKIGDNFQT----VDFTDSRTV-DAINKSVDIFTEGKINP 104
Query: 76 LIK 78
L+
Sbjct: 105 LLD 107
>d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]}
Length = 378
Score = 39.9 bits (92), Expect = 8e-06
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 8 NYEISSPELKIANKIYFAKDIELNPAYQTQAVDNFNSELGKVDFSQPPA-AAKEMNDWVS 66
N S LK+ ++Y K + L+ + + + EL VDF ++N+ +
Sbjct: 81 NKLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIK 140
Query: 67 NHTNDKIKDLIKAGNLT 83
+ T+ ++++ ++
Sbjct: 141 DLTDGHFENILADNSVN 157
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 25.2 bits (55), Expect = 1.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 17 KIANKIYFAKDIELNPAYQTQ 37
KIA +IY A +
Sbjct: 445 KIATEIYGADGVNYTAEADKA 465
>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId:
287]}
Length = 135
Score = 24.1 bits (52), Expect = 2.4
Identities = 5/47 (10%), Positives = 15/47 (31%)
Query: 32 PAYQTQAVDNFNSELGKVDFSQPPAAAKEMNDWVSNHTNDKIKDLIK 78
+ QA +G + Q + V + + + +++
Sbjct: 68 EESRIQAGRLLERSIGGIALQQWGTTGGAASQLVLDASPELRREITD 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,654
Number of extensions: 11901
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 18
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.4 bits)