BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2656
         (85 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
 pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
 pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
 pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
 pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
 pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
 pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
 pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
          Length = 2695

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 12   TAVKFHYIWNLRDLDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYGDKMVDKKDIET 70
            T ++ HY+++ R+L  + +G+  A     R +   L+RLW +EA R++ D++V  K+  +
Sbjct: 1465 TGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNS 1524

Query: 71   FNKMLVENIKK 81
            F ++L E + K
Sbjct: 1525 FEQLLYETVDK 1535


>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
 pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
          Length = 2486

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 12   TAVKFHYIWNLRDLDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYGDKMVDKKDIET 70
            T ++ HY+++ R+L  + +G+  A     R +   L+RLW +EA R++ D++V  K+  +
Sbjct: 1246 TGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNS 1305

Query: 71   FNKMLVENIKK 81
            F ++L E + K
Sbjct: 1306 FEQLLYETVDK 1316


>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
 pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
          Length = 3245

 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 2    HTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFA---SGDCVRSSSQLVRLWMHEASRVY 58
            +++  + F P  ++ HYI++ R+L    + +L A      C      LVRLW HEA R++
Sbjct: 1494 YSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEG--LVRLWAHEALRLF 1550

Query: 59   GDKMVDKKDIETFNKMLVE 77
             D++V+ ++ E  +K + E
Sbjct: 1551 QDRLVETEEKEWTDKKIDE 1569


>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
 pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
          Length = 3367

 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 2    HTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFA---SGDCVRSSSQLVRLWMHEASRVY 58
            +++  + F P  ++ HYI++ R+L    + +L A      C      LVRLW HEA R++
Sbjct: 1494 YSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEG--LVRLWAHEALRLF 1550

Query: 59   GDKMVDKKDIETFNKMLVE 77
             D++V+ ++ E  +K + E
Sbjct: 1551 QDRLVETEEKEWTDKKIDE 1569


>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
           Thermotoga Maritima
 pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
           Thermotoga Maritima
 pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
           Thermotoga Maritima
 pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
           Thermotoga Maritima
          Length = 404

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 14  VKFHYIWNLRDLDNVFQG-MLFASGDCVRSSS 44
           V   Y W+LR+L+ V++G  LF +G  V  +S
Sbjct: 167 VDAKYAWSLRELEGVYEGDRLFLAGSLVEPTS 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,231,324
Number of Sequences: 62578
Number of extensions: 64833
Number of successful extensions: 366
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 7
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)