Query psy2656
Match_columns 85
No_of_seqs 119 out of 1010
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:52:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12775 AAA_7: P-loop contain 99.8 3.9E-21 8.6E-26 135.9 1.9 53 1-53 220-272 (272)
2 KOG3595|consensus 99.8 4.2E-20 9.2E-25 151.8 6.1 84 1-84 310-393 (1395)
3 COG5245 DYN1 Dynein, heavy cha 99.3 7.9E-13 1.7E-17 109.5 3.4 83 1-84 1682-1765(3164)
4 PF12041 DELLA: Transcriptiona 79.7 0.99 2.1E-05 26.4 1.0 15 20-34 48-62 (73)
5 PF08349 DUF1722: Protein of u 67.8 18 0.0004 22.3 4.7 30 43-78 52-81 (117)
6 PF15466 DUF4635: Domain of un 65.3 17 0.00038 23.3 4.2 44 30-75 71-114 (135)
7 KOG4065|consensus 58.7 1.4 3.1E-05 28.4 -1.6 20 7-27 61-80 (144)
8 PF12774 AAA_6: Hydrolytic ATP 57.0 4.9 0.00011 28.0 0.7 19 14-32 205-223 (231)
9 COG4765 Uncharacterized protei 50.3 13 0.00027 24.9 1.8 34 23-56 120-154 (164)
10 PF01763 Herpes_UL6: Herpesvir 45.2 16 0.00035 29.0 1.9 29 41-69 464-493 (557)
11 PF06798 PrkA: PrkA serine pro 43.0 76 0.0016 22.5 4.9 54 20-77 37-92 (254)
12 PF03225 Viral_Hsp90: Viral he 42.9 41 0.00089 26.2 3.8 44 13-60 399-447 (512)
13 PF04622 ERG2_Sigma1R: ERG2 an 42.9 27 0.00059 24.4 2.6 53 15-70 26-78 (216)
14 PF14319 Zn_Tnp_IS91: Transpos 41.5 22 0.00047 22.0 1.8 20 4-24 77-96 (111)
15 PF08225 Antimicrobial19: Pseu 36.9 22 0.00048 15.9 0.9 12 23-34 3-14 (23)
16 PF02606 LpxK: Tetraacyldisacc 36.6 18 0.00038 26.5 0.9 36 14-50 259-294 (326)
17 KOG4117|consensus 34.3 19 0.00042 20.7 0.7 17 21-37 13-29 (73)
18 PF15320 RAM: mRNA cap methyla 30.9 37 0.0008 20.1 1.5 22 53-76 2-23 (81)
19 KOG4143|consensus 28.1 79 0.0017 21.8 2.9 54 15-71 27-80 (218)
20 PF12728 HTH_17: Helix-turn-he 28.1 45 0.00098 17.0 1.5 30 2-31 19-49 (51)
21 PF04270 Strep_his_triad: Stre 27.8 20 0.00043 19.7 -0.0 13 16-28 5-17 (53)
22 cd05129 RasGAP_RAP6 Rab5-activ 27.5 48 0.001 24.7 1.9 51 15-65 241-292 (353)
23 cd04762 HTH_MerR-trunc Helix-T 27.3 47 0.001 16.0 1.4 14 16-29 34-47 (49)
24 COG4106 Tam Trans-aconitate me 27.3 62 0.0014 23.2 2.4 40 44-84 196-235 (257)
25 TIGR01764 excise DNA binding d 27.1 45 0.00097 16.2 1.3 29 2-30 19-48 (49)
26 TIGR01690 ICE_RAQPRD integrati 26.5 45 0.00097 20.4 1.4 27 14-40 53-81 (94)
27 KOG4394|consensus 25.9 11 0.00023 23.7 -1.5 18 10-27 30-47 (116)
28 cd07357 HN_L-whirlin_R2_like S 25.8 55 0.0012 19.5 1.6 20 56-76 59-78 (81)
29 PF03028 Dynein_heavy: Dynein 25.3 1.4E+02 0.0031 23.8 4.3 73 6-80 277-351 (707)
30 cd07290 PX_PI3K_C2_beta The ph 24.5 79 0.0017 19.6 2.3 40 1-40 44-97 (109)
31 cd08816 CARD_RIG-I_1 Caspase a 24.5 38 0.00082 20.5 0.8 29 53-81 50-78 (89)
32 PF03438 Pneumo_NS1: Pneumovir 24.5 92 0.002 19.7 2.5 53 11-79 81-133 (136)
33 PF15269 zf-C2H2_7: Zinc-finge 24.3 30 0.00066 18.6 0.3 8 12-19 4-11 (54)
34 KOG1283|consensus 24.3 64 0.0014 24.5 2.1 37 48-84 251-287 (414)
35 COG5502 Uncharacterized conser 23.1 65 0.0014 21.0 1.7 27 54-81 35-61 (135)
36 smart00096 UTG Uteroglobin. 23.1 1.2E+02 0.0026 17.4 2.7 55 25-82 6-67 (69)
37 COG4699 Uncharacterized protei 22.8 1.7E+02 0.0037 18.6 3.5 47 26-75 41-87 (120)
38 TIGR01215 minE cell division t 22.7 1.4E+02 0.003 17.5 3.0 23 63-85 33-55 (81)
39 PF10436 BCDHK_Adom3: Mitochon 22.3 2.4E+02 0.0051 18.5 5.0 59 25-83 35-96 (164)
40 PRK00652 lpxK tetraacyldisacch 22.1 37 0.00079 24.9 0.5 33 14-50 263-295 (325)
41 cd00171 Sec7 Sec7 domain; Doma 21.3 1E+02 0.0022 20.5 2.5 32 52-83 82-113 (185)
42 COG4496 Uncharacterized protei 21.1 1.4E+02 0.0031 18.3 2.8 23 52-75 25-47 (100)
43 PRK00124 hypothetical protein; 20.5 1.2E+02 0.0026 20.0 2.6 22 61-82 126-147 (151)
44 PF06121 DUF959: Domain of Unk 20.5 86 0.0019 21.7 2.0 7 44-50 132-138 (202)
45 PF15573 Imm27: Immunity prote 20.2 1.4E+02 0.0031 21.4 3.0 62 23-84 182-248 (259)
46 smart00222 Sec7 Sec7 domain. D 20.1 1.2E+02 0.0025 20.3 2.6 32 52-83 83-114 (187)
47 PF08785 Ku_PK_bind: Ku C term 20.0 33 0.00071 21.4 -0.1 27 51-77 46-72 (120)
No 1
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.81 E-value=3.9e-21 Score=135.91 Aligned_cols=53 Identities=51% Similarity=0.936 Sum_probs=49.6
Q ss_pred ChHHHHhhhCCCCCcceeeeecchhHHHhhhhhcccccccCChHHHHHHHHHh
Q psy2656 1 MHTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHE 53 (85)
Q Consensus 1 ~y~~v~~~~~ptp~k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw~hE 53 (85)
+|++++++|+|||.|+||+||||||+||+|||+++.++.+.++.+++|||.||
T Consensus 220 ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~~~~~~~~~~l~rLW~HE 272 (272)
T PF12775_consen 220 LYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLASPESIKTKESLLRLWVHE 272 (272)
T ss_dssp HHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHHHCTSSS-SHHHHHHHHHH
T ss_pred HHHhhhcccCCCCccceeeccHHHHHHHHHHHHhcChhhcCCHHHheEeecCC
Confidence 58999999999999999999999999999999999999999999999999999
No 2
>KOG3595|consensus
Probab=99.80 E-value=4.2e-20 Score=151.79 Aligned_cols=84 Identities=44% Similarity=0.793 Sum_probs=79.7
Q ss_pred ChHHHHhhhCCCCCcceeeeecchhHHHhhhhhcccccccCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHHH
Q psy2656 1 MHTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENIK 80 (85)
Q Consensus 1 ~y~~v~~~~~ptp~k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~ 80 (85)
+|..++.+|+|||+++||+|||||++||++|+..+.+....+...++++|.||+.|||.|||++++|++||++.+.+.+.
T Consensus 310 ~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~~~~~~~~~ 389 (1395)
T KOG3595|consen 310 FYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFDKKLQEVLL 389 (1395)
T ss_pred HHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999977888899999999999999999999999999999999999998
Q ss_pred cccC
Q psy2656 81 KVFA 84 (85)
Q Consensus 81 ~~f~ 84 (85)
+.|+
T Consensus 390 ~~~~ 393 (1395)
T KOG3595|consen 390 KLFE 393 (1395)
T ss_pred HHhh
Confidence 8775
No 3
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.32 E-value=7.9e-13 Score=109.53 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred ChHHHHhhhCCCCCcceeeeecchhHHHhhhhhcccccccC-ChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHH
Q psy2656 1 MHTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVR-SSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENI 79 (85)
Q Consensus 1 ~y~~v~~~~~ptp~k~HY~FnlRdl~~i~qgl~~~~~~~~~-~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~ 79 (85)
+|+..++++. +--+.||.|+||||+||+.|+..+...... +..+++++|+||++|++.|||+.+++..|+.+.+.+..
T Consensus 1682 ly~~~k~~~k-~~lq~~y~y~pReLtR~lr~i~~yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~ 1760 (3164)
T COG5245 1682 LYLSSKDKTK-FFLQMNYGYKPRELTRSLRAIFGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFG 1760 (3164)
T ss_pred HHHHHHHhhh-hhcccccccChHHHHHHHHHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4777777776 566899999999999999999987654443 34689999999999999999999999999999999998
Q ss_pred HcccC
Q psy2656 80 KKVFA 84 (85)
Q Consensus 80 ~~~f~ 84 (85)
.++|+
T Consensus 1761 ~~~~~ 1765 (3164)
T COG5245 1761 LRAIR 1765 (3164)
T ss_pred HHhhh
Confidence 87764
No 4
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=79.72 E-value=0.99 Score=26.41 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.6
Q ss_pred eecchhHHHhhhhhc
Q psy2656 20 WNLRDLDNVFQGMLF 34 (85)
Q Consensus 20 FnlRdl~~i~qgl~~ 34 (85)
|||-||+.|+++|+.
T Consensus 48 yNPSDLs~WvesMLs 62 (73)
T PF12041_consen 48 YNPSDLSSWVESMLS 62 (73)
T ss_dssp S-TTBHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHH
Confidence 479999999999984
No 5
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=67.76 E-value=18 Score=22.33 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHH
Q psy2656 43 SSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVEN 78 (85)
Q Consensus 43 ~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~ 78 (85)
.+.+..+|.+ |.+.+ +++|++.|.+++.+-
T Consensus 52 ~Nvl~Hi~Gy-----fk~~l-s~~EK~~~~~~i~~y 81 (117)
T PF08349_consen 52 INVLQHIFGY-----FKKKL-SSEEKQHFLDLIEDY 81 (117)
T ss_pred HHHHHHHHHH-----HHHhC-CHHHHHHHHHHHHHH
Confidence 3445555555 78776 788999999888653
No 6
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=65.34 E-value=17 Score=23.31 Aligned_cols=44 Identities=18% Similarity=0.516 Sum_probs=30.0
Q ss_pred hhhhcccccccCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHH
Q psy2656 30 QGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKML 75 (85)
Q Consensus 30 qgl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l 75 (85)
||+-.-+.+....+...+|=|.-|...||-.+| +++..-..+++
T Consensus 71 qg~EyQt~epseEPik~~r~WLkenLhvflEkL--E~EvreLEQlV 114 (135)
T PF15466_consen 71 QGFEYQTKEPSEEPIKAIRNWLKENLHVFLEKL--EKEVRELEQLV 114 (135)
T ss_pred cccccccCCCccchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 444444445556678899999999999999998 33444444443
No 7
>KOG4065|consensus
Probab=58.70 E-value=1.4 Score=28.37 Aligned_cols=20 Identities=35% Similarity=0.894 Sum_probs=16.0
Q ss_pred hhhCCCCCcceeeeecchhHH
Q psy2656 7 QTFLPTAVKFHYIWNLRDLDN 27 (85)
Q Consensus 7 ~~~~ptp~k~HY~FnlRdl~~ 27 (85)
.++.|-..++|| |||.|+.+
T Consensus 61 a~mtpeqlqfHY-F~MHDldk 80 (144)
T KOG4065|consen 61 AKMTPEQLQFHY-FSMHDLDK 80 (144)
T ss_pred hhCCHHHHhhhh-hhhhccCc
Confidence 467777788999 89999864
No 8
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=56.95 E-value=4.9 Score=27.96 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=12.8
Q ss_pred CcceeeeecchhHHHhhhh
Q psy2656 14 VKFHYIWNLRDLDNVFQGM 32 (85)
Q Consensus 14 ~k~HY~FnlRdl~~i~qgl 32 (85)
.+.||-|+||-+-.|+...
T Consensus 205 ~q~hydfgLRalk~vl~~a 223 (231)
T PF12774_consen 205 KQDHYDFGLRALKSVLRMA 223 (231)
T ss_dssp SSTT---SHHHHHHHHHHH
T ss_pred cCccccccHHHHHHHHHHH
Confidence 4689999999999887654
No 9
>COG4765 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.26 E-value=13 Score=24.90 Aligned_cols=34 Identities=21% Similarity=0.632 Sum_probs=27.2
Q ss_pred chhHHHhhhhhcccccccCC-hHHHHHHHHHhhhh
Q psy2656 23 RDLDNVFQGMLFASGDCVRS-SSQLVRLWMHEASR 56 (85)
Q Consensus 23 Rdl~~i~qgl~~~~~~~~~~-~~~l~rlw~hE~~R 56 (85)
|++.+||+|-+.+.+...+. .-.+...|.-+|..
T Consensus 120 r~~r~if~GWM~asSpgLna~EHPIYdvwlk~Ckq 154 (164)
T COG4765 120 RKIRRIFTGWMFASSPGLNAVEHPIYDVWLKDCKQ 154 (164)
T ss_pred chHhhheeeeeeccCCCcccccchHHHHHHHHhhh
Confidence 78999999999998877665 34577889888853
No 10
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=45.22 E-value=16 Score=28.98 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHhhhhHHh-ccCCCHHHHH
Q psy2656 41 RSSSQLVRLWMHEASRVYG-DKMVDKKDIE 69 (85)
Q Consensus 41 ~~~~~l~rlw~hE~~Rvf~-DRLi~~~d~~ 69 (85)
...+.|-+||-+|-+|+|. -|.++.+.++
T Consensus 464 ~~~~rLs~LWE~El~RtFKL~r~vnNQGqe 493 (557)
T PF01763_consen 464 EDEKRLSRLWEQELFRTFKLRRVVNNQGQE 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCCCce
Confidence 4557799999999999997 5666655443
No 11
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=43.04 E-value=76 Score=22.53 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=34.3
Q ss_pred eecchhHHHhhhhhcc-cccccCChHHHHHHHHHhhhhHHhc-cCCCHHHHHHHHHHHHH
Q psy2656 20 WNLRDLDNVFQGMLFA-SGDCVRSSSQLVRLWMHEASRVYGD-KMVDKKDIETFNKMLVE 77 (85)
Q Consensus 20 FnlRdl~~i~qgl~~~-~~~~~~~~~~l~rlw~hE~~Rvf~D-RLi~~~d~~~f~~~l~~ 77 (85)
+++|++-+++...+.. +...+-++.+++. +......+ -.++++++..|.+.|..
T Consensus 37 iS~R~~~~~ls~a~~~~~~~~~i~p~~vl~----~L~~~l~~~~~i~~e~~~~y~~~l~~ 92 (254)
T PF06798_consen 37 ISPRFVIKILSNALSSDSEEDCINPLDVLN----ELEEGLKDHPSISEEERERYLEFLKS 92 (254)
T ss_pred CCHhHHHHHHHHHHHhCcccceecHHHHHH----HHHHHhhcccccCHHHHHHHHHHHHH
Confidence 5788999999888877 4445555554443 22222333 36677788888777763
No 12
>PF03225 Viral_Hsp90: Viral heat shock protein Hsp90 homologue ; InterPro: IPR004909 This family includes the Beet yellows virus heat shock protein 90 homologue and other hypothetical proteins.
Probab=42.90 E-value=41 Score=26.24 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=33.7
Q ss_pred CCcceeeeecchhHH-HhhhhhcccccccCChHHHHHHHH----HhhhhHHhc
Q psy2656 13 AVKFHYIWNLRDLDN-VFQGMLFASGDCVRSSSQLVRLWM----HEASRVYGD 60 (85)
Q Consensus 13 p~k~HY~FnlRdl~~-i~qgl~~~~~~~~~~~~~l~rlw~----hE~~Rvf~D 60 (85)
....-+.+++.++.. ++.-+....++. .+++|+|+ |+|.++|.+
T Consensus 399 ~~~~~~~i~~s~v~~~~f~~vq~~~p~~----~Ni~R~w~~~ra~~A~~lfk~ 447 (512)
T PF03225_consen 399 FKGESKSIDMSDVESHVFNEVQSRHPEV----RNIRRQWCGPRANRAIRLFKS 447 (512)
T ss_pred ccCceeEEehHHHHHHHHHHHHhhCcch----HHHHHHHhhhhhHHHHHHHHh
Confidence 344556888999999 888888777654 68899995 788888864
No 13
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=42.85 E-value=27 Score=24.36 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=39.3
Q ss_pred cceeeeecchhHHHhhhhhcccccccCChHHHHHHHHHhhhhHHhccCCCHHHHHH
Q psy2656 15 KFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIET 70 (85)
Q Consensus 15 k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~ 70 (85)
...|+|++..|..+.+.-.-..+ .+....+.--.-|-.+.+.|...+.+|.+|
T Consensus 26 ~~~YiFdp~~l~~ia~~~ia~~~---~~~~~~~~~l~~~L~~~y~~~i~~~~~~~W 78 (216)
T PF04622_consen 26 PKSYIFDPKVLHEIAKKAIARHP---NDTEEILSDLVDELRKKYPDHILPSNDSEW 78 (216)
T ss_pred CccEEeCHHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHhHCCCCcCCCCCCce
Confidence 46799999999999987664322 456777777888888888886656556666
No 14
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=41.49 E-value=22 Score=22.05 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=15.9
Q ss_pred HHHhhhCCCCCcceeeeecch
Q psy2656 4 KLAQTFLPTAVKFHYIWNLRD 24 (85)
Q Consensus 4 ~v~~~~~ptp~k~HY~FnlRd 24 (85)
+.++.++|.| .+|-+||+-+
T Consensus 77 ~~~~~ll~~~-y~HvVFTlP~ 96 (111)
T PF14319_consen 77 KQREDLLPVP-YFHVVFTLPH 96 (111)
T ss_pred HHHhhCCCCC-eEEEEEcCcH
Confidence 5567888866 9999999764
No 15
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=36.90 E-value=22 Score=15.93 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=8.8
Q ss_pred chhHHHhhhhhc
Q psy2656 23 RDLDNVFQGMLF 34 (85)
Q Consensus 23 Rdl~~i~qgl~~ 34 (85)
..|.++|||+..
T Consensus 3 ntlkkv~qglhe 14 (23)
T PF08225_consen 3 NTLKKVFQGLHE 14 (23)
T ss_pred hHHHHHHHHHHH
Confidence 457788998864
No 16
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=36.62 E-value=18 Score=26.52 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=24.7
Q ss_pred CcceeeeecchhHHHhhhhhcccccccCChHHHHHHH
Q psy2656 14 VKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLW 50 (85)
Q Consensus 14 ~k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw 50 (85)
-.-||.|+..|+.++..-.-... ..+++.++.++|=
T Consensus 259 f~DHh~yt~~dl~~l~~~a~~~~-~iltTeKDaVKl~ 294 (326)
T PF02606_consen 259 FPDHHRYTEQDLEKLEAEAKAAG-IILTTEKDAVKLP 294 (326)
T ss_pred CCCCCCCCHHHHHHHHHhhcccc-eEEecHHHHhhCh
Confidence 45799999999999988644333 3445556666654
No 17
>KOG4117|consensus
Probab=34.26 E-value=19 Score=20.69 Aligned_cols=17 Identities=41% Similarity=0.687 Sum_probs=14.4
Q ss_pred ecchhHHHhhhhhcccc
Q psy2656 21 NLRDLDNVFQGMLFASG 37 (85)
Q Consensus 21 nlRdl~~i~qgl~~~~~ 37 (85)
|+.||+.++||++.-..
T Consensus 13 Nmq~LTs~vQ~lLQq~Q 29 (73)
T KOG4117|consen 13 NMQDLTSVVQGLLQQTQ 29 (73)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 78899999999996554
No 18
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=30.87 E-value=37 Score=20.14 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=14.7
Q ss_pred hhhhHHhccCCCHHHHHHHHHHHH
Q psy2656 53 EASRVYGDKMVDKKDIETFNKMLV 76 (85)
Q Consensus 53 E~~Rvf~DRLi~~~d~~~f~~~l~ 76 (85)
||.=.|+||.+. +| +.|+++++
T Consensus 2 ~~Ee~Fa~RfTe-~D-~ey~~~~~ 23 (81)
T PF15320_consen 2 ECEEEFADRFTE-DD-EEYMEYCK 23 (81)
T ss_pred hHHHHHHHhccc-cC-HHHHHHHh
Confidence 566789999955 46 45655554
No 19
>KOG4143|consensus
Probab=28.07 E-value=79 Score=21.81 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=34.5
Q ss_pred cceeeeecchhHHHhhhhhcccccccCChHHHHHHHHHhhhhHHhccCCCHHHHHHH
Q psy2656 15 KFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIETF 71 (85)
Q Consensus 15 k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f 71 (85)
...|+|.+..|+.+.+...-... .+...+++...---.--++|-+..+++-+|.
T Consensus 27 ~~~y~Fdp~~l~el~~q~i~l~~---~~t~all~di~d~l~~hyGd~i~p~~~~eWV 80 (218)
T KOG4143|consen 27 TQSYVFDPEELAELARQYIGLDA---NHTLALLRDIVDLLRLHYGDHILPDEELEWV 80 (218)
T ss_pred ccceeeCHHHHHHHHHHHhcccc---ccHHHHHHHHHHHHHhCcccccCccchheee
Confidence 46799999999988876653332 2355666655443333477866666666664
No 20
>PF12728 HTH_17: Helix-turn-helix domain
Probab=28.05 E-value=45 Score=16.97 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=18.6
Q ss_pred hHHHHhhhCCCC-CcceeeeecchhHHHhhh
Q psy2656 2 HTKLAQTFLPTA-VKFHYIWNLRDLDNVFQG 31 (85)
Q Consensus 2 y~~v~~~~~ptp-~k~HY~FnlRdl~~i~qg 31 (85)
|+-+++.-+|.. ..-++.|+..||.+|+++
T Consensus 19 ~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 19 YRWIRQGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred HHHHHcCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 444444444432 224588898999988764
No 21
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=27.82 E-value=20 Score=19.66 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=5.7
Q ss_pred ceeeeecchhHHH
Q psy2656 16 FHYIWNLRDLDNV 28 (85)
Q Consensus 16 ~HY~FnlRdl~~i 28 (85)
--|+|++.||..-
T Consensus 5 DGyvFdp~dI~~~ 17 (53)
T PF04270_consen 5 DGYVFDPADIISE 17 (53)
T ss_dssp TS-B--GGG--EE
T ss_pred CCceeCHHHcccc
Confidence 4689999988753
No 22
>cd05129 RasGAP_RAP6 Rab5-activating protein 6 (RAP6) is an endosomal protein with a role in the regulation of receptor-mediated endocytosis. RAP6 contains a Vps9 domain, which is involved in the activation of Rab5, and a Ras GAP domain (RGD). Rab5 is a small GTPase required for the control of the endocystic route, and its activity is regulated by guanine nucleotide exchange factor, such as Rabex5, and GAPs, such as RN-tre. Human Rap6 protein is localized on the plasma membrane and on the endosome. RAP6 binds to Rab5 and Ras through the Vps9 and RGD domains, respectively.
Probab=27.52 E-value=48 Score=24.74 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=34.5
Q ss_pred cceeeeecchhHHHhhhhhcccccccCCh-HHHHHHHHHhhhhHHhccCCCH
Q psy2656 15 KFHYIWNLRDLDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYGDKMVDK 65 (85)
Q Consensus 15 k~HY~FnlRdl~~i~qgl~~~~~~~~~~~-~~l~rlw~hE~~Rvf~DRLi~~ 65 (85)
...-..||=-++|++|.+........+++ ...+--|-+|+.+.|-|.+++.
T Consensus 241 s~~~RrNL~~IAKvLQ~lA~~~~~~~~~~~m~~ln~~~~~~~~~fl~~~~d~ 292 (353)
T cd05129 241 SEVARFNLMQVGQILQMLALNKFESPDPRYKDILLKFDKDCVAAFLDVLIDG 292 (353)
T ss_pred CHHHHHhHHHHHHHHHHHHcCCccCCccHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34455788899999999987654332322 3445568999999987666543
No 23
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=27.27 E-value=47 Score=16.02 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=10.0
Q ss_pred ceeeeecchhHHHh
Q psy2656 16 FHYIWNLRDLDNVF 29 (85)
Q Consensus 16 ~HY~FnlRdl~~i~ 29 (85)
-++.|+..|+.++.
T Consensus 34 ~~~~~~~~ei~~~~ 47 (49)
T cd04762 34 GHRRFPEEDLERLL 47 (49)
T ss_pred CceecCHHHHHHHH
Confidence 57778887777754
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=27.27 E-value=62 Score=23.18 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHHHcccC
Q psy2656 44 SQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENIKKVFA 84 (85)
Q Consensus 44 ~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~~~f~ 84 (85)
..++.=..--++|=|-|+| ++++++.|.+.....+.++|+
T Consensus 196 ~aIvdWvkgTgLrP~L~~L-~e~~~~~FL~~Y~~~l~~aYP 235 (257)
T COG4106 196 DAIVDWVKGTGLRPYLDRL-DEEERQRFLDRYLALLAEAYP 235 (257)
T ss_pred cchhhheeccccceecccc-CHHHHHHHHHHHHHHHHHhCC
Confidence 4444433445688999999 888999999999998888775
No 25
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=27.10 E-value=45 Score=16.23 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=18.1
Q ss_pred hHHHHhhhCCCC-CcceeeeecchhHHHhh
Q psy2656 2 HTKLAQTFLPTA-VKFHYIWNLRDLDNVFQ 30 (85)
Q Consensus 2 y~~v~~~~~ptp-~k~HY~FnlRdl~~i~q 30 (85)
|+.+++..+|.+ ...++.|+..|+.+|+.
T Consensus 19 ~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 19 YRLIHEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 445555555532 23577888888888764
No 26
>TIGR01690 ICE_RAQPRD integrative conjugative element protein, RAQPRD family. This model represents a small family of proteins about 100 amino acids in length, including a predicted signal sequence and a perfectly conserved motif RAQPRD towards the C-terminus. Members are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae DC3000. The function is unknown.
Probab=26.54 E-value=45 Score=20.40 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=19.4
Q ss_pred Ccceeee--ecchhHHHhhhhhccccccc
Q psy2656 14 VKFHYIW--NLRDLDNVFQGMLFASGDCV 40 (85)
Q Consensus 14 ~k~HY~F--nlRdl~~i~qgl~~~~~~~~ 40 (85)
.++||-| =.+||.+|=+||-.+...+-
T Consensus 53 ~Ry~FDY~rl~~Dl~~ir~GI~~YL~PsR 81 (94)
T TIGR01690 53 DRYHFDYPRLRADLKRIRQGIQQYLTPSR 81 (94)
T ss_pred cCeecCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3555555 45899999999998765544
No 27
>KOG4394|consensus
Probab=25.90 E-value=11 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.5
Q ss_pred CCCCCcceeeeecchhHH
Q psy2656 10 LPTAVKFHYIWNLRDLDN 27 (85)
Q Consensus 10 ~ptp~k~HY~FnlRdl~~ 27 (85)
-|||..-||+.+++++++
T Consensus 30 e~t~LaR~Yi~t~~~Isk 47 (116)
T KOG4394|consen 30 EATPLARNYIKTMDLISK 47 (116)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 357888899999999987
No 28
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=25.79 E-value=55 Score=19.51 Aligned_cols=20 Identities=10% Similarity=0.514 Sum_probs=15.2
Q ss_pred hHHhccCCCHHHHHHHHHHHH
Q psy2656 56 RVYGDKMVDKKDIETFNKMLV 76 (85)
Q Consensus 56 Rvf~DRLi~~~d~~~f~~~l~ 76 (85)
+..+ -+|+++|+..|+.++.
T Consensus 59 sEiR-~lI~p~Dl~RFD~LVl 78 (81)
T cd07357 59 SEIR-ELISPQDLDRFDDLVL 78 (81)
T ss_pred HHHH-HhcChhhhhHHHHHHH
Confidence 3444 3789999999998864
No 29
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=25.34 E-value=1.4e+02 Score=23.84 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=44.2
Q ss_pred HhhhCCCCCcceeeeecchhHHHhhhhhcccccc--cCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHHH
Q psy2656 6 AQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDC--VRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENIK 80 (85)
Q Consensus 6 ~~~~~ptp~k~HY~FnlRdl~~i~qgl~~~~~~~--~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~ 80 (85)
+.+|-|-.=.--|-||--|+.--.+-+....... -.-+-.-++--.-|+ +|+=|+.++.|+..+..++.+.+.
T Consensus 277 R~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ipw~~l~~l~~~i--~YGGrv~d~~D~r~l~~~~~~~f~ 351 (707)
T PF03028_consen 277 RRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIPWDALRYLIGEI--VYGGRVDDEWDRRLLNTLLNQFFN 351 (707)
T ss_dssp HHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTTHHHHHHHHHHT--TTTTT-SSHHHHHHHHHHHHHHSS
T ss_pred HHhcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCcHHHHHHHhhhc--eecCeeccHHHHHHHHHHHHHHcC
Confidence 4467787777789999999987766554322211 111234444444455 799999999999999998888764
No 30
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=24.53 E-value=79 Score=19.64 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=25.0
Q ss_pred ChHHHHhhh----CCC-CCcceeeee---------cchhHHHhhhhhccccccc
Q psy2656 1 MHTKLAQTF----LPT-AVKFHYIWN---------LRDLDNVFQGMLFASGDCV 40 (85)
Q Consensus 1 ~y~~v~~~~----~pt-p~k~HY~Fn---------lRdl~~i~qgl~~~~~~~~ 40 (85)
||++++..| +|. |.+.+.-.+ .++|..-+++++..+++..
T Consensus 44 Lh~kLk~~FP~~~lP~LP~k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is 97 (109)
T cd07290 44 LHNKLRLLFPSSKLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHLIHAPPEVA 97 (109)
T ss_pred HHHHHHHHCccccCCCCCCCcccCccccHHHHHHHHHHHHHHHHHHHcCChhee
Confidence 466777777 554 666555554 3467777777777666443
No 31
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=24.51 E-value=38 Score=20.49 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=24.2
Q ss_pred hhhhHHhccCCCHHHHHHHHHHHHHHHHc
Q psy2656 53 EASRVYGDKMVDKKDIETFNKMLVENIKK 81 (85)
Q Consensus 53 E~~Rvf~DRLi~~~d~~~f~~~l~~~~~~ 81 (85)
|+..+|-|++..-++.-||...|...-..
T Consensus 50 ~AaqlfL~~l~~lee~GWFqafLDaL~~a 78 (89)
T cd08816 50 SAAQLFLDYVLKLEEEGWFQAFLDALYAA 78 (89)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 67888999999989999999998876554
No 32
>PF03438 Pneumo_NS1: Pneumovirus NS1 protein; InterPro: IPR005099 This non-structural protein is one of two found in pneumoviruses. The protein is about 140 amino acids in length. The NS1 protein appears to be important for efficient replication but not essential []. The NS1 protein has been shown by yeast two-hybrid to interact with the viral P protein []. This protein is also known as the 1C protein. It has also been shown that NS1 can potently inhibit transcription and RNA replication [].
Probab=24.48 E-value=92 Score=19.71 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=35.6
Q ss_pred CCCCcceeeeecchhHHHhhhhhcccccccCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHH
Q psy2656 11 PTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENI 79 (85)
Q Consensus 11 ptp~k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~ 79 (85)
|.-+.--|+|-+-+|+..+|-=-.... .|.=.|+.|| ++.+...+...+.+.+
T Consensus 81 p~lqnggyiwel~elthc~q~nglidd---------------ncei~fskrl-sds~~~~y~nqls~ll 133 (136)
T PF03438_consen 81 PILQNGGYIWELMELTHCFQTNGLIDD---------------NCEIKFSKRL-SDSEMTKYMNQLSDLL 133 (136)
T ss_pred ceeccCceeeehhhhhhccCCCccccC---------------CceEEEehhc-CHHHHHHHHHHHHHHh
Confidence 344567899999999998773222211 2445688888 6667777877777654
No 33
>PF15269 zf-C2H2_7: Zinc-finger
Probab=24.33 E-value=30 Score=18.56 Aligned_cols=8 Identities=50% Similarity=0.663 Sum_probs=6.4
Q ss_pred CCCcceee
Q psy2656 12 TAVKFHYI 19 (85)
Q Consensus 12 tp~k~HY~ 19 (85)
.|.|+||+
T Consensus 4 kpkkphyi 11 (54)
T PF15269_consen 4 KPKKPHYI 11 (54)
T ss_pred CCCCCCcC
Confidence 47789998
No 34
>KOG1283|consensus
Probab=24.29 E-value=64 Score=24.49 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHHHhhhhHHhccCCCHHHHHHHHHHHHHHHHcccC
Q psy2656 48 RLWMHEASRVYGDKMVDKKDIETFNKMLVENIKKVFA 84 (85)
Q Consensus 48 rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~~~f~ 84 (85)
.-=.||.+|-.++|.+-++++....+++...+++..+
T Consensus 251 ~~~~~~~~rrl~~~~~~~~~~D~L~~lM~g~vrkkLg 287 (414)
T KOG1283|consen 251 AMTPEEVMRRLLVRFVGDEDRDKLSDLMNGPVRKKLG 287 (414)
T ss_pred hcchHHHHHHHHhccCcchhHHHHHHHhccccccccc
Confidence 3446889999999999999999999999988887654
No 35
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=65 Score=21.01 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=18.2
Q ss_pred hhhHHhccCCCHHHHHHHHHHHHHHHHc
Q psy2656 54 ASRVYGDKMVDKKDIETFNKMLVENIKK 81 (85)
Q Consensus 54 ~~Rvf~DRLi~~~d~~~f~~~l~~~~~~ 81 (85)
.+|+++||| +.++-..|...|=..+..
T Consensus 35 vL~tlRdrL-~~eea~~~aaqLP~~ir~ 61 (135)
T COG5502 35 VLRTLRDRL-PGEEAADFAAQLPMEIRD 61 (135)
T ss_pred HHHHHHHHc-ChhHHHHHHHhCCHHHHH
Confidence 478999999 555667776666555443
No 36
>smart00096 UTG Uteroglobin.
Probab=23.08 E-value=1.2e+02 Score=17.37 Aligned_cols=55 Identities=9% Similarity=0.147 Sum_probs=33.4
Q ss_pred hHHHhhhhhccccccc-------CChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHHHcc
Q psy2656 25 LDNVFQGMLFASGDCV-------RSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENIKKV 82 (85)
Q Consensus 25 l~~i~qgl~~~~~~~~-------~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~~~ 82 (85)
+.+.+++++..+++.+ ...+.++. .-+-..---|+ ++++|+....+++.+|+.+-
T Consensus 6 ~~~~v~~fl~gt~~~Y~~~l~~y~~~~~~~e--a~~~lK~cvD~-L~~~~k~~i~~ll~kI~~s~ 67 (69)
T smart00096 6 FKRVIELLLLGTPSSYEASLKQFKPDPDMLE--AGRQLKKLVDT-LPQETRENILKLTEKIYTSP 67 (69)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCHHHHH--HHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCC
Confidence 4456666666555432 22222221 12223445699 69999999999999998764
No 37
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.75 E-value=1.7e+02 Score=18.63 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=30.5
Q ss_pred HHHhhhhhcccccccCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHH
Q psy2656 26 DNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKML 75 (85)
Q Consensus 26 ~~i~qgl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l 75 (85)
....++|...-+...+.+..+...|-.|-.|-=-| .++|.+.|..++
T Consensus 41 qq~w~~l~~~~p~y~skk~ll~afwn~eD~~wCED---CeedLQ~fhsli 87 (120)
T COG4699 41 QQLWFRLKVNFPNYVSKKDLLTAFWNNEDMEWCED---CEEDLQQFHSLI 87 (120)
T ss_pred HHHHHHHHHhCcccccchhHHHHHhcchhhhHHHH---HHHHHHHHHHHh
Confidence 35566666665544455556667777766665445 678889888776
No 38
>TIGR01215 minE cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites.
Probab=22.74 E-value=1.4e+02 Score=17.47 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHcccCC
Q psy2656 63 VDKKDIETFNKMLVENIKKVFAV 85 (85)
Q Consensus 63 i~~~d~~~f~~~l~~~~~~~f~~ 85 (85)
++++-.+...+-+.+++.+|+.+
T Consensus 33 ~~p~~l~~mk~dil~VIskY~~i 55 (81)
T TIGR01215 33 LAPEYLEELRKEILEVISKYVEI 55 (81)
T ss_pred CCHHHHHHHHHHHHHHHHHheec
Confidence 67888888888888899988764
No 39
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=22.34 E-value=2.4e+02 Score=18.48 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=38.6
Q ss_pred hHHHhhhhhcccccccCCh-HHHHHHHHHhhhhHHhc--cCCCHHHHHHHHHHHHHHHHccc
Q psy2656 25 LDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYGD--KMVDKKDIETFNKMLVENIKKVF 83 (85)
Q Consensus 25 l~~i~qgl~~~~~~~~~~~-~~l~rlw~hE~~Rvf~D--RLi~~~d~~~f~~~l~~~~~~~f 83 (85)
+++.++.+-..+.....++ -..++=|+-++...+.+ ..-+.+|-..|.+.+.++...|-
T Consensus 35 lA~ri~~l~~LP~~l~~~p~i~~V~~~Y~~sF~~L~~~~~~~~~~~~~~F~~~l~~i~~~H~ 96 (164)
T PF10436_consen 35 LAHRIRELQNLPYILVSNPSIQQVYEWYLQSFEELRSFPPPKTLEDNEKFTELLERILDRHS 96 (164)
T ss_dssp HHHHHHHHTTS-HHHHTSHHHHHHHHHHHHHHHHHHTTSTTTSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChhhccChhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3455555554444333343 45678888888777764 45566678899999999988763
No 40
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=22.06 E-value=37 Score=24.94 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=23.9
Q ss_pred CcceeeeecchhHHHhhhhhcccccccCChHHHHHHH
Q psy2656 14 VKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLW 50 (85)
Q Consensus 14 ~k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw 50 (85)
-.-||.|+..|+..+.+. ....+++.++.++|-
T Consensus 263 f~DHh~ft~~dl~~l~~~----~~~ivtTeKDaVKl~ 295 (325)
T PRK00652 263 FPDHYPFTKADLEALVSK----GLTLLMTEKDAVKCR 295 (325)
T ss_pred CCCCCCCCHHHHHHHHhc----CCeEEEchhHHhhCc
Confidence 357999999999999774 122455667788863
No 41
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=21.35 E-value=1e+02 Score=20.54 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=25.9
Q ss_pred HhhhhHHhccCCCHHHHHHHHHHHHHHHHccc
Q psy2656 52 HEASRVYGDKMVDKKDIETFNKMLVENIKKVF 83 (85)
Q Consensus 52 hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~~~f 83 (85)
-||+|.|..++.-+.|.+..+.++..-.+.++
T Consensus 82 ~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~ 113 (185)
T cd00171 82 DEALRKFLQSFRLPGEAQKIDRLLEKFSERYC 113 (185)
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 36899999999999998888888877666554
No 42
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=1.4e+02 Score=18.25 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=17.3
Q ss_pred HhhhhHHhccCCCHHHHHHHHHHH
Q psy2656 52 HEASRVYGDKMVDKKDIETFNKML 75 (85)
Q Consensus 52 hE~~Rvf~DRLi~~~d~~~f~~~l 75 (85)
-||.+.|.| |.+..+.+...+.+
T Consensus 25 eecy~FfdD-lcTinEiqslaqRl 47 (100)
T COG4496 25 EECYAFFDD-LCTINEIQSLAQRL 47 (100)
T ss_pred HHHHHHHHh-hcCHHHHHHHHHHH
Confidence 478888877 77888887776655
No 43
>PRK00124 hypothetical protein; Validated
Probab=20.53 E-value=1.2e+02 Score=19.99 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHcc
Q psy2656 61 KMVDKKDIETFNKMLVENIKKV 82 (85)
Q Consensus 61 RLi~~~d~~~f~~~l~~~~~~~ 82 (85)
+=-+++|++.|.+.|..++.+.
T Consensus 126 ~~~~~~Dr~~F~~~L~~~l~~~ 147 (151)
T PRK00124 126 KPFTQEDRSRFEAELDKLIRRI 147 (151)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999988763
No 44
>PF06121 DUF959: Domain of Unknown Function (DUF959) ; InterPro: IPR010363 The function of this collagen XVIII N-terminal domain has not been characterised. It is not expressed in the 'short' isoform of collagen XVIII [].; GO: 0031012 extracellular matrix
Probab=20.46 E-value=86 Score=21.67 Aligned_cols=7 Identities=43% Similarity=1.194 Sum_probs=5.9
Q ss_pred HHHHHHH
Q psy2656 44 SQLVRLW 50 (85)
Q Consensus 44 ~~l~rlw 50 (85)
++|++||
T Consensus 132 RsFVqlW 138 (202)
T PF06121_consen 132 RSFVQLW 138 (202)
T ss_pred HHHHHHh
Confidence 6788898
No 45
>PF15573 Imm27: Immunity protein 27
Probab=20.15 E-value=1.4e+02 Score=21.36 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=48.1
Q ss_pred chhHH-Hhhhhhcccccc----cCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHHHcccC
Q psy2656 23 RDLDN-VFQGMLFASGDC----VRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENIKKVFA 84 (85)
Q Consensus 23 Rdl~~-i~qgl~~~~~~~----~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~~~f~ 84 (85)
-||++ ++|.++.+.... ....++++.+|.-|-.=+=.+-+|+.++..-+..-+....++.|.
T Consensus 182 GdLtk~l~~rv~iAa~~~e~~~m~lipSLLSI~tGekvP~dy~tiIs~~~~~~~i~YId~Ls~k~W~ 248 (259)
T PF15573_consen 182 GDLTKELMQRVMIAANKEEKYKMELIPSLLSIWTGEKVPVDYNTIISRENYKDMISYIDSLSKKNWE 248 (259)
T ss_pred hHHHHHHHHHHHHHhccccceeeEehhhHHHHhhCccccccccceechhHHHHHHHHHHHHhHhhhh
Confidence 46765 567777664322 224588999999998888888999999999999999998887764
No 46
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.14 E-value=1.2e+02 Score=20.26 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=25.3
Q ss_pred HhhhhHHhccCCCHHHHHHHHHHHHHHHHccc
Q psy2656 52 HEASRVYGDKMVDKKDIETFNKMLVENIKKVF 83 (85)
Q Consensus 52 hE~~Rvf~DRLi~~~d~~~f~~~l~~~~~~~f 83 (85)
-|++|.|..++.-+.|-+..+.++..-...++
T Consensus 83 ~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~ 114 (187)
T smart00222 83 DQALREFLESFRLPGEAQKIDRLLEAFSSRYC 114 (187)
T ss_pred HHHHHHHHHhCcCCchHHHHHHHHHHHHHHHH
Confidence 36899999999999898888888777666544
No 47
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=20.05 E-value=33 Score=21.35 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=17.1
Q ss_pred HHhhhhHHhccCCCHHHHHHHHHHHHH
Q psy2656 51 MHEASRVYGDKMVDKKDIETFNKMLVE 77 (85)
Q Consensus 51 ~hE~~Rvf~DRLi~~~d~~~f~~~l~~ 77 (85)
+=||+++++...+..++-..|++.|.+
T Consensus 46 alecl~~lR~~~i~~~ep~~yN~Fl~~ 72 (120)
T PF08785_consen 46 ALECLRALREECIEEEEPDEYNDFLRK 72 (120)
T ss_dssp HHHHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 467888888877766655555555443
Done!