Query psy2656
Match_columns 85
No_of_seqs 119 out of 1010
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:53:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.9 4.8E-26 1.6E-30 193.9 6.2 83 1-84 1493-1576(3245)
2 4akg_A Glutathione S-transfera 99.9 1E-25 3.5E-30 190.5 6.0 83 1-84 1455-1538(2695)
3 2zsh_B Della protein GAI; plan 78.1 0.75 2.6E-05 27.9 1.0 16 20-35 72-87 (110)
4 4akg_A Glutathione S-transfera 53.4 18 0.0006 32.5 4.8 70 2-79 809-878 (2695)
5 2kvv_A Putative excisionase; D 34.0 27 0.00091 19.8 2.1 21 14-34 52-72 (78)
6 2cs7_A Pneumococcal histidine 29.3 13 0.00046 19.8 0.3 13 15-27 7-19 (55)
7 3u04_A Peptide deformylase 1; 29.2 84 0.0029 20.3 4.2 36 44-80 147-186 (190)
8 3pn3_A Peptide deformylase 1B, 28.6 57 0.002 21.4 3.3 36 44-80 125-164 (193)
9 3qu1_A Peptide deformylase 2; 27.7 93 0.0032 19.8 4.2 36 44-80 128-167 (171)
10 1xeo_A Peptide deformylase; co 24.7 1.2E+02 0.0041 19.2 4.3 34 44-78 124-161 (168)
11 3e3u_A Peptide deformylase; me 24.5 1.2E+02 0.004 19.8 4.3 33 44-77 140-176 (197)
12 1n5n_A Peptide deformylase; me 24.2 1.2E+02 0.0042 19.5 4.3 34 44-78 138-175 (180)
13 1rl4_A Formylmethionine deform 24.2 1.2E+02 0.004 19.7 4.2 35 44-79 134-172 (188)
14 1oks_A RNA polymerase alpha su 23.3 73 0.0025 16.7 2.5 21 62-82 31-51 (56)
15 2w3t_A Peptide deformylase; pr 21.8 1.4E+02 0.0047 19.4 4.2 34 44-78 124-161 (188)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.92 E-value=4.8e-26 Score=193.90 Aligned_cols=83 Identities=30% Similarity=0.446 Sum_probs=76.5
Q ss_pred ChHHHHhhhCCCCCcceeeeecchhHHHhhhhhccc-ccccCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHH
Q psy2656 1 MHTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFAS-GDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENI 79 (85)
Q Consensus 1 ~y~~v~~~~~ptp~k~HY~FnlRdl~~i~qgl~~~~-~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~ 79 (85)
+|++++++|+|+ .|+||+||||||+||+|||+++. +....++.+++|||+|||.|||+||||+++|++||.+++.+++
T Consensus 1493 ly~~v~~~~lp~-~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~ 1571 (3245)
T 3vkg_A 1493 FYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVA 1571 (3245)
T ss_dssp HHHHHHHHSCTT-TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 488999999996 89999999999999999999973 4455678899999999999999999999999999999999999
Q ss_pred HcccC
Q psy2656 80 KKVFA 84 (85)
Q Consensus 80 ~~~f~ 84 (85)
+++|+
T Consensus 1572 ~~~F~ 1576 (3245)
T 3vkg_A 1572 LKHFP 1576 (3245)
T ss_dssp HHHCT
T ss_pred HHhcC
Confidence 99985
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.92 E-value=1e-25 Score=190.47 Aligned_cols=83 Identities=24% Similarity=0.514 Sum_probs=76.9
Q ss_pred ChHHHHhhhCCCCCcceeeeecchhHHHhhhhhccccc-ccCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHH
Q psy2656 1 MHTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGD-CVRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENI 79 (85)
Q Consensus 1 ~y~~v~~~~~ptp~k~HY~FnlRdl~~i~qgl~~~~~~-~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~ 79 (85)
+|++++++|+|+ .|+||+||||||+||+|||+++.++ .+.++.+++|||+|||.|||+|||++++|++||.+++.+++
T Consensus 1455 ~y~~v~~~~~~~-~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~ 1533 (2695)
T 4akg_A 1455 LYNECKARYSTG-LQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETV 1533 (2695)
T ss_dssp HHHHHHHHSCTT-TCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-cCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 488999999875 8999999999999999999998554 57889999999999999999999999999999999999999
Q ss_pred HcccC
Q psy2656 80 KKVFA 84 (85)
Q Consensus 80 ~~~f~ 84 (85)
+++|+
T Consensus 1534 ~~~f~ 1538 (2695)
T 4akg_A 1534 DKYLP 1538 (2695)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 99985
No 3
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B*
Probab=78.07 E-value=0.75 Score=27.95 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.1
Q ss_pred eecchhHHHhhhhhcc
Q psy2656 20 WNLRDLDNVFQGMLFA 35 (85)
Q Consensus 20 FnlRdl~~i~qgl~~~ 35 (85)
+|+.||+.|+++|+.-
T Consensus 72 yNPSDLs~WvesMLsE 87 (110)
T 2zsh_B 72 YNPAELYTWLDSMLTD 87 (110)
T ss_dssp SCTTBHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHH
Confidence 5899999999999843
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=53.37 E-value=18 Score=32.47 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=40.5
Q ss_pred hHHHHhhhCCCCCcceeeeecchhHHHhhhhhcccccccCChHHHHHHHHHhhhhHHhccCCCHHHHHHHHHHHHHHH
Q psy2656 2 HTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDKKDIETFNKMLVENI 79 (85)
Q Consensus 2 y~~v~~~~~ptp~k~HY~FnlRdl~~i~qgl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~ 79 (85)
|+.+++.+ ..+.||-|+||.+-.|+...-............+++.. ..+.--++ ..+|...|.+++.++.
T Consensus 809 ~~l~~e~l---s~q~hydfglRalksvL~~ag~lkr~~~~e~~~l~~al----~~~~lpk~-~~~D~~lf~~li~dlF 878 (2695)
T 4akg_A 809 LELLSSKC---SSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVESL----KRVILPSL-GDTDELVFKDELSKIF 878 (2695)
T ss_dssp HHHHHHHS---CCCTTCCCSHHHHHHHHHHHHHHHHHSCSSHHHHHHHH----HHHTGGGC-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh---CcCCcccccHHHHHHHHHHHHHhhccCCcHHHHHHHHH----HHhccccC-chhhHHHHHHHHHHhC
Confidence 44444443 35789999999998887643222211112233333322 22344566 4678899988887654
No 5
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=34.00 E-value=27 Score=19.85 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=18.5
Q ss_pred CcceeeeecchhHHHhhhhhc
Q psy2656 14 VKFHYIWNLRDLDNVFQGMLF 34 (85)
Q Consensus 14 ~k~HY~FnlRdl~~i~qgl~~ 34 (85)
.++.-.||+..+.+|++|.+.
T Consensus 52 ~~S~~~YN~~~I~~Wie~~~~ 72 (78)
T 2kvv_A 52 LRGTTWYNYPEINKFIRDSLE 72 (78)
T ss_dssp TTCEEEEEHHHHHHHHHHHHS
T ss_pred cCceEEEcHHHHHHHHHHHHh
Confidence 467889999999999999874
No 6
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=29.32 E-value=13 Score=19.75 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=10.3
Q ss_pred cceeeeecchhHH
Q psy2656 15 KFHYIWNLRDLDN 27 (85)
Q Consensus 15 k~HY~FnlRdl~~ 27 (85)
.-.|+||+.|+..
T Consensus 7 ~DgyvF~p~dIvs 19 (55)
T 2cs7_A 7 DDGYIFNASDIIE 19 (55)
T ss_dssp TTSCBCCGGGCCE
T ss_pred CCCcEECHHHhee
Confidence 3579999998865
No 7
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=29.19 E-value=84 Score=20.31 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhh----HHhccCCCHHHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEASR----VYGDKMVDKKDIETFNKMLVENIK 80 (85)
Q Consensus 44 ~~l~rlw~hE~~R----vf~DRLi~~~d~~~f~~~l~~~~~ 80 (85)
.-+.|+..||.-. +|-||+ +...+..+.+-+.+..+
T Consensus 147 G~~Ar~iQHEiDHL~GiLfiDrl-~~~~r~~~~~~~~k~~~ 186 (190)
T 3u04_A 147 GWLARCLQHEIDHLNGTVFLKYL-SKFKRDFAIEKVKKKER 186 (190)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGS-CHHHHHHHHHHHHHHHC
T ss_pred ChhhhhhhhHHHhcCCEeeeeec-CHHHHHHHHHHHHHHHH
Confidence 4578999999965 678998 55666777766665543
No 8
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=28.64 E-value=57 Score=21.36 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhh----HHhccCCCHHHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEASR----VYGDKMVDKKDIETFNKMLVENIK 80 (85)
Q Consensus 44 ~~l~rlw~hE~~R----vf~DRLi~~~d~~~f~~~l~~~~~ 80 (85)
.-+.++..||.-. +|-||+ +...+..+.+-+.+..+
T Consensus 125 G~~Ar~iQHEiDHL~GiLfiDrl-~~~kr~~~~~k~~k~~~ 164 (193)
T 3pn3_A 125 RLPARIFQHEYDHLEGVLFFDRM-TDQVLDSIREELEALEK 164 (193)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGS-CHHHHHTTHHHHHHHHH
T ss_pred ChhhhhhhHHHHHhCCEeeeeec-CHHHHHHHHHHHHHHHH
Confidence 4578999999975 677998 66677777776666544
No 9
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=27.69 E-value=93 Score=19.84 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhh----HHhccCCCHHHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEASR----VYGDKMVDKKDIETFNKMLVENIK 80 (85)
Q Consensus 44 ~~l~rlw~hE~~R----vf~DRLi~~~d~~~f~~~l~~~~~ 80 (85)
.-+.++..||.-. +|-||+ +...+..+.+-+....+
T Consensus 128 G~~Ar~iQHEiDHL~GiLfiDrl-~~~~r~~~~~~~~k~~~ 167 (171)
T 3qu1_A 128 DFLAIVMQHEIDHLSGNLFIDYL-SPLKQQMAMKKVKKHVK 167 (171)
T ss_dssp STHHHHHHHHHHHHTTCCGGGGS-CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhHHHHhhCCEehhhhC-CHHHHHHHHHHHHHHHh
Confidence 3478999999965 577998 55666777766665544
No 10
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=24.72 E-value=1.2e+02 Score=19.22 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhh----hHHhccCCCHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEAS----RVYGDKMVDKKDIETFNKMLVEN 78 (85)
Q Consensus 44 ~~l~rlw~hE~~----Rvf~DRLi~~~d~~~f~~~l~~~ 78 (85)
.-+.|+..||.- .+|-||+ ++..+..+.+-+.+.
T Consensus 124 G~~Ar~iQHEiDHL~GiLfiDrl-~~~~~~~~~~~~~~~ 161 (168)
T 1xeo_A 124 GLLAICIQHEMDHLVGKLFMDYL-SPLKQQRIRQKVEKL 161 (168)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGS-CHHHHHHHHHHHHHH
T ss_pred CCeEEeeeehhHHhCCEEEeeeC-CHHHHHHHHHHHHHH
Confidence 457899999996 4678999 555666665555543
No 11
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=24.47 E-value=1.2e+02 Score=19.76 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhh----HHhccCCCHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEASR----VYGDKMVDKKDIETFNKMLVE 77 (85)
Q Consensus 44 ~~l~rlw~hE~~R----vf~DRLi~~~d~~~f~~~l~~ 77 (85)
.-+.|+..||.-. +|-||+ +...+..+.+-+.+
T Consensus 140 G~~Ar~iQHEiDHL~GiLfiDrl-~~~~r~~~~~~~~k 176 (197)
T 3e3u_A 140 GLFARMLQHETGHLDGFLYLDRL-IGRYARNAKRAVKS 176 (197)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGC-CHHHHHHHHHHHHH
T ss_pred ChhhhhhhhhhHhhCCEeeheec-CHHHHHHHHHHHHh
Confidence 4578999999965 688998 55666666665544
No 12
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=24.22 E-value=1.2e+02 Score=19.50 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhh----hHHhccCCCHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEAS----RVYGDKMVDKKDIETFNKMLVEN 78 (85)
Q Consensus 44 ~~l~rlw~hE~~----Rvf~DRLi~~~d~~~f~~~l~~~ 78 (85)
.-+.|+..||.- .+|-||+ +...+..+.+-+.+.
T Consensus 138 G~~Ar~iQHEiDHL~GiLfiDrl-~~~~r~~~~~~~~~~ 175 (180)
T 1n5n_A 138 GLLAVCIQHECDHLNGKLFVDYL-STLKRDRIRKKLEKQ 175 (180)
T ss_dssp HHHHHHHHHHHHHHBTCCGGGGS-CHHHHHHHHHHHHHH
T ss_pred CCeEEeeeehhHhhCCEeEeeec-CHHHHHHHHHHHHHH
Confidence 457899999996 5788999 555666665555443
No 13
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=24.22 E-value=1.2e+02 Score=19.72 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhh----hHHhccCCCHHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEAS----RVYGDKMVDKKDIETFNKMLVENI 79 (85)
Q Consensus 44 ~~l~rlw~hE~~----Rvf~DRLi~~~d~~~f~~~l~~~~ 79 (85)
.-+.|+..||.- .+|-||+ +...+..+.+-+.+..
T Consensus 134 G~~Ar~iQHEiDHL~GiLfiDrl-~~~~r~~~~~~~~~~~ 172 (188)
T 1rl4_A 134 GIHSRIFQHEFDHLNGTLFIDKM-TQVDKKKVRPKLNELI 172 (188)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGB-CHHHHHHHHHHHHHHH
T ss_pred CCeEEEeEehhHhhCCEEEEeec-CHHHHHHHHHHHHHHh
Confidence 457899999996 4788999 5556666665555543
No 14
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=23.34 E-value=73 Score=16.74 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHHHHcc
Q psy2656 62 MVDKKDIETFNKMLVENIKKV 82 (85)
Q Consensus 62 Li~~~d~~~f~~~l~~~~~~~ 82 (85)
+-..+|...|.+++..++-++
T Consensus 31 ikg~~dL~eF~qMl~~I~~~~ 51 (56)
T 1oks_A 31 IKGANDLAKFHQMLVKIIMKH 51 (56)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHh
Confidence 457889999999999998765
No 15
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=21.84 E-value=1.4e+02 Score=19.38 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhh----hHHhccCCCHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEAS----RVYGDKMVDKKDIETFNKMLVEN 78 (85)
Q Consensus 44 ~~l~rlw~hE~~----Rvf~DRLi~~~d~~~f~~~l~~~ 78 (85)
.-+.|+..||.- .+|-||+ ++..+..+.+-+.+.
T Consensus 124 G~~Ar~iQHEiDHL~GiLfiDrl-~~~~r~~~~~~~~~~ 161 (188)
T 2w3t_A 124 GLLAICIQHEMDHLVGKLFMDYL-SPLKQQRIRQKVEKL 161 (188)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGS-CHHHHHHHHHHHHHH
T ss_pred CCeEEeeeehHHHhCCEeEeeec-CHHHHHHHHHHHHHH
Confidence 457899999996 5688999 555666665555443
Done!