Query psy2656
Match_columns 85
No_of_seqs 119 out of 1010
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 21:53:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2656.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2656hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vzya2 g.81.1.1 (A:234-290) H 50.5 3.6 0.00026 20.4 1.5 16 15-30 39-54 (57)
2 d1ctda_ a.39.1.5 (A:) Troponin 50.3 5.2 0.00038 17.9 1.9 22 52-76 7-31 (34)
3 d1vq0a2 g.81.1.1 (A:231-287) H 49.4 3.6 0.00026 20.5 1.4 17 15-31 37-53 (57)
4 d1rl4a_ d.167.1.1 (A:) Peptide 45.4 20 0.0014 21.0 4.7 36 44-80 125-164 (165)
5 d1xjha_ g.81.1.1 (A:) HSP33, C 45.4 4.2 0.00031 20.4 1.3 17 15-31 44-60 (62)
6 d1gkza1 a.29.5.1 (A:38-185) Br 40.7 31 0.0022 20.1 6.0 58 25-82 35-95 (148)
7 d1y8oa1 a.29.5.1 (A:13-176) Py 39.7 33 0.0024 20.2 6.0 59 25-83 45-108 (164)
8 d1jm6a1 a.29.5.1 (A:1003-1169) 37.9 36 0.0026 20.2 5.9 59 25-83 51-114 (167)
9 d2btoa2 d.79.2.1 (A:253-432) T 25.5 16 0.0012 21.6 1.8 16 3-19 5-20 (180)
10 d1oksa_ a.8.5.1 (A:) RNA polym 24.8 31 0.0023 16.7 2.5 21 62-82 30-50 (54)
11 d1rutx4 g.39.1.3 (X:114-146) L 22.5 9.4 0.00069 16.9 0.1 13 6-19 6-18 (33)
12 d1gx5a_ e.8.1.4 (A:) Viral RNA 22.0 20 0.0015 25.4 1.9 19 16-34 450-468 (530)
13 d1v7ba2 a.121.1.1 (A:75-175) T 21.3 30 0.0022 18.8 2.3 29 48-79 71-99 (101)
14 d2hyja1 a.4.1.9 (A:8-82) Putat 21.3 18 0.0013 18.0 1.2 25 40-64 46-70 (75)
15 d1in1a_ c.15.1.2 (A:) DNA liga 21.0 16 0.0012 19.3 1.0 26 23-48 11-36 (88)
No 1
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=50.46 E-value=3.6 Score=20.41 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=14.0
Q ss_pred cceeeeecchhHHHhh
Q psy2656 15 KFHYIWNLRDLDNVFQ 30 (85)
Q Consensus 15 k~HY~FnlRdl~~i~q 30 (85)
..+|.|+.-||..+++
T Consensus 39 ~~~Y~f~~~dl~~l~~ 54 (57)
T d1vzya2 39 NEKYLFTKEELEGLRD 54 (57)
T ss_dssp CCEEEEEHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHh
Confidence 4689999999999886
No 2
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=50.26 E-value=5.2 Score=17.92 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=13.6
Q ss_pred HhhhhHHh---ccCCCHHHHHHHHHHHH
Q psy2656 52 HEASRVYG---DKMVDKKDIETFNKMLV 76 (85)
Q Consensus 52 hE~~Rvf~---DRLi~~~d~~~f~~~l~ 76 (85)
-||.|+|- |-.|+. +.|.+++.
T Consensus 7 ae~FRifDkNaDGyiD~---eEl~~ilr 31 (34)
T d1ctda_ 7 ANAFRIFDKNADGYIDI---EELGEILR 31 (34)
T ss_dssp HHHHHTTCCSSSSCBCH---HHHHHHHH
T ss_pred HHHHHHHccCCcccccH---HHHHHHHH
Confidence 58899996 555554 44544443
No 3
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=49.39 E-value=3.6 Score=20.45 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=14.4
Q ss_pred cceeeeecchhHHHhhh
Q psy2656 15 KFHYIWNLRDLDNVFQG 31 (85)
Q Consensus 15 k~HY~FnlRdl~~i~qg 31 (85)
..+|.|+..||..++..
T Consensus 37 ~~~Y~f~~~el~~l~~~ 53 (57)
T d1vq0a2 37 NTRYVFSEEELEELLKF 53 (57)
T ss_dssp CCEEEECHHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHh
Confidence 46899999999998864
No 4
>d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=45.38 E-value=20 Score=21.04 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhh----HHhccCCCHHHHHHHHHHHHHHHH
Q psy2656 44 SQLVRLWMHEASR----VYGDKMVDKKDIETFNKMLVENIK 80 (85)
Q Consensus 44 ~~l~rlw~hE~~R----vf~DRLi~~~d~~~f~~~l~~~~~ 80 (85)
.-..|++.||.-. +|.||+ +..++..+.+-+.++.+
T Consensus 125 G~~Ar~~QHEiDHL~Gilf~Dr~-~~~~~~~~~kkl~k~~k 164 (165)
T d1rl4a_ 125 GIHSRIFQHEFDHLNGTLFIDKM-TQVDKKKVRPKLNELIR 164 (165)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGGB-CHHHHHHHHHHHHHHHH
T ss_pred cceeeeeeehhHHhCCEeeeeeC-CHHHHHHHHHHHHHHhc
Confidence 4468999999975 466999 77888888888777654
No 5
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.37 E-value=4.2 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=14.2
Q ss_pred cceeeeecchhHHHhhh
Q psy2656 15 KFHYIWNLRDLDNVFQG 31 (85)
Q Consensus 15 k~HY~FnlRdl~~i~qg 31 (85)
..+|.|+.-||..++..
T Consensus 44 ~~~Y~f~~~dl~~l~~~ 60 (62)
T d1xjha_ 44 GNHYLFNAMDIAEIRNN 60 (62)
T ss_dssp CCEEEEEHHHHHHHTTT
T ss_pred CCEEEECHHHHHHHHHh
Confidence 46899999999998753
No 6
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=40.71 E-value=31 Score=20.10 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=39.6
Q ss_pred hHHHhhhhhcccccccCCh-HHHHHHHHHhhhhHHh--ccCCCHHHHHHHHHHHHHHHHcc
Q psy2656 25 LDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYG--DKMVDKKDIETFNKMLVENIKKV 82 (85)
Q Consensus 25 l~~i~qgl~~~~~~~~~~~-~~l~rlw~hE~~Rvf~--DRLi~~~d~~~f~~~l~~~~~~~ 82 (85)
|++.++.+-..+-....++ -..++=|+-++...+. ....+.+|-+.|.+.+.++...|
T Consensus 35 lA~ri~el~~LP~~l~~np~i~~V~~~Y~~SF~~l~~~~~~~~~ed~~~F~~~l~~i~~rH 95 (148)
T d1gkza1 35 IAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 95 (148)
T ss_dssp HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHhhcCchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHh
Confidence 4556666655554333343 4567778877766655 34668889999999999998776
No 7
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.72 E-value=33 Score=20.25 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=37.4
Q ss_pred hHHHhhhhhcccccccCCh-HHHHHHHHHhhhhHHhc----cCCCHHHHHHHHHHHHHHHHccc
Q psy2656 25 LDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYGD----KMVDKKDIETFNKMLVENIKKVF 83 (85)
Q Consensus 25 l~~i~qgl~~~~~~~~~~~-~~l~rlw~hE~~Rvf~D----RLi~~~d~~~f~~~l~~~~~~~f 83 (85)
|++.++.|-..+-....++ -..++-|+-++...+.+ -.-+.++-+.|.+++..+...|-
T Consensus 45 LAhRi~el~~LP~~l~~~p~i~~V~~~Y~~SF~~l~~f~~~~~~~~~~~~~F~~~L~~i~~rH~ 108 (164)
T d1y8oa1 45 LANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHN 108 (164)
T ss_dssp HHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHCCHHHHcCccHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 4555566555543333333 35678888777655553 24456677899999999887763
No 8
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=37.91 E-value=36 Score=20.15 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=38.1
Q ss_pred hHHHhhhhhcccccccCCh-HHHHHHHHHhhhhHHh---cc-CCCHHHHHHHHHHHHHHHHccc
Q psy2656 25 LDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYG---DK-MVDKKDIETFNKMLVENIKKVF 83 (85)
Q Consensus 25 l~~i~qgl~~~~~~~~~~~-~~l~rlw~hE~~Rvf~---DR-Li~~~d~~~f~~~l~~~~~~~f 83 (85)
|++.++.|-..+-....++ -..++-|+-++...+. ++ ..+.++-+.|.+++..+...|-
T Consensus 51 LAhRi~el~~LP~~l~~~p~I~~V~~~Y~~SF~~l~~f~~~~~~~~~~~~~F~~~L~~i~~rH~ 114 (167)
T d1jm6a1 51 LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHN 114 (167)
T ss_dssp HHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHHHHHHTTSSSCTTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCHHHhcCCcHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhc
Confidence 4566666665554444443 3457888877765554 32 3455677899999999987763
No 9
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=25.49 E-value=16 Score=21.56 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=12.2
Q ss_pred HHHHhhhCCCCCcceee
Q psy2656 3 TKLAQTFLPTAVKFHYI 19 (85)
Q Consensus 3 ~~v~~~~~ptp~k~HY~ 19 (85)
+++..+|.|.| +-|+.
T Consensus 5 ~kl~tNLVPfP-rlhFl 20 (180)
T d2btoa2 5 RELLTNLVPQP-SLHFL 20 (180)
T ss_dssp HHHHHHHCSST-TCCEE
T ss_pred HHhhccCCCCC-ccccc
Confidence 46778888888 77775
No 10
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus [TaxId: 11234]}
Probab=24.82 E-value=31 Score=16.74 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcc
Q psy2656 62 MVDKKDIETFNKMLVENIKKV 82 (85)
Q Consensus 62 Li~~~d~~~f~~~l~~~~~~~ 82 (85)
+-..+|...|.+++..++.++
T Consensus 30 ikg~~dL~eF~QMl~~Ii~k~ 50 (54)
T d1oksa_ 30 IKGANDLAKFHQMLVKIIMKH 50 (54)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHh
Confidence 457889999999999998764
No 11
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.48 E-value=9.4 Score=16.87 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=9.2
Q ss_pred HhhhCCCCCcceee
Q psy2656 6 AQTFLPTAVKFHYI 19 (85)
Q Consensus 6 ~~~~~ptp~k~HY~ 19 (85)
+.++.|- .++||+
T Consensus 6 ~n~LVPG-DRFHyv 18 (33)
T d1rutx4 6 RNRLVPG-DRFHYI 18 (33)
T ss_dssp CCBCCTT-CEEEEE
T ss_pred cccccCC-ceeEEe
Confidence 4567774 599996
No 12
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus [TaxId: 11103]}
Probab=21.97 E-value=20 Score=25.40 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=17.3
Q ss_pred ceeeeecchhHHHhhhhhc
Q psy2656 16 FHYIWNLRDLDNVFQGMLF 34 (85)
Q Consensus 16 ~HY~FnlRdl~~i~qgl~~ 34 (85)
.+|.|+|.||-+|+|++.-
T Consensus 450 ~~ys~~~~~lp~ii~~lhg 468 (530)
T d1gx5a_ 450 ACYSIEPLDLPQIIERLHG 468 (530)
T ss_dssp EEEEECGGGHHHHHHHHHC
T ss_pred ceeeeCHHHhHHHHHHhcC
Confidence 5899999999999999964
No 13
>d1v7ba2 a.121.1.1 (A:75-175) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.33 E-value=30 Score=18.82 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=21.5
Q ss_pred HHHHHhhhhHHhccCCCHHHHHHHHHHHHHHH
Q psy2656 48 RLWMHEASRVYGDKMVDKKDIETFNKMLVENI 79 (85)
Q Consensus 48 rlw~hE~~Rvf~DRLi~~~d~~~f~~~l~~~~ 79 (85)
.||.||. ++..-+++++++...+.+.+.+
T Consensus 71 GLWlse~---l~~~~ls~~~R~~l~~~l~~li 99 (101)
T d1v7ba2 71 GLFVHDY---IHDDVLSKSKRQAMLETILELI 99 (101)
T ss_dssp HHHHGGG---TSSSCCCHHHHHHHHHHHHHTS
T ss_pred hHHHHHH---cCCCCCCHHHHHHHHHHHHHhc
Confidence 3799995 5666689999998877766543
No 14
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.27 E-value=18 Score=17.95 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=18.6
Q ss_pred cCChHHHHHHHHHhhhhHHhccCCC
Q psy2656 40 VRSSSQLVRLWMHEASRVYGDKMVD 64 (85)
Q Consensus 40 ~~~~~~l~rlw~hE~~Rvf~DRLi~ 64 (85)
++++..++.-...+....|.++++.
T Consensus 46 F~~K~~L~~~~~~~~~~~~~~~v~~ 70 (75)
T d2hyja1 46 FGTKETLQISTLDKAFVDFWHRVVE 70 (75)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTG
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888877777766543
No 15
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.03 E-value=16 Score=19.28 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=16.9
Q ss_pred chhHHHhhhhhcccccccCChHHHHH
Q psy2656 23 RDLDNVFQGMLFASGDCVRSSSQLVR 48 (85)
Q Consensus 23 Rdl~~i~qgl~~~~~~~~~~~~~l~r 48 (85)
+.|..+|+|+..+.....++...|-+
T Consensus 11 k~l~diF~G~~~~i~~~~p~~~~L~r 36 (88)
T d1in1a_ 11 KVLLDIFTGVRLYLPPSTPDFSRLRR 36 (88)
T ss_dssp TCCCSSSTTCBCCCCTTSTTHHHHHH
T ss_pred cchhhHhCCeEEEECCCCCCHHHHHH
Confidence 46788999998776555555444433
Done!