RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2656
(85 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 102 bits (257), Expect = 1e-27
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 4 KLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSS-SQLVRLWMHEASRVYGDKM 62
+ T ++ HY+++ R+L + +G+ A R + L+RLW +EA R++ D++
Sbjct: 1457 NECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRL 1516
Query: 63 VDKKDIETFNKMLVENIKKVF 83
V K+ +F ++L E + K
Sbjct: 1517 VGVKEKNSFEQLLYETVDKYL 1537
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 96.5 bits (240), Expect = 2e-25
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 1 MHTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSSS-QLVRLWMHEASRVYG 59
+++ + F P + HYI++ R+L + +L A + LVRLW HEA R++
Sbjct: 1493 FYSESQKRFTPDI-QAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQ 1551
Query: 60 DKMVDKKDIETFNKMLVENIKKVF 83
D++V+ ++ E +K + E K F
Sbjct: 1552 DRLVETEEKEWTDKKIDEVALKHF 1575
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.011
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 9 FLPTAVKFH--YIWNLRD-LDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKMVDK 65
FLP A FH L D + + + + ++ + VY D
Sbjct: 420 FLPVASPFHSHL---LVPASDLINKDL--VKNNVSFNAKDI-------QIPVYD--TFDG 465
Query: 66 KDIETFNKMLVENI 79
D+ + + E I
Sbjct: 466 SDLRVLSGSISERI 479
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 31.1 bits (71), Expect = 0.021
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 20/76 (26%)
Query: 5 LAQTFLPTAVKFHYIWN---LRDLDNVFQGMLFASGDCVRSSSQLV---RLW-------- 50
L + F P +K H W + +G + D S L +
Sbjct: 155 LLEKFFPDVIKIH--WEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIV 212
Query: 51 MHEASRVYGDKMVDKK 66
HE + VD++
Sbjct: 213 RHENN----KNGVDQE 224
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.18
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 35 ASGDCVRSSSQLVRLW----------MHEASRVYGDKMVDK--KDIETFNKMLVENIKKV 82
A D + + +R W + AS+V + +K KD+E +N+ E ++K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 83 FA 84
Sbjct: 135 KI 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 0.70
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 3 TKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKM 62
++ Q F+ ++ +Y + + + + S Q RL+
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLY------------ 120
Query: 63 VDKKDIETFNKMLVENIKKV 82
D + F K V ++
Sbjct: 121 ---NDNQVFAKYNVSRLQPY 137
Score = 24.8 bits (53), Expect = 4.9
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 44 SQLVRLWMHEASRVYGDKMVDKKDIETFN---KMLV 76
+L++ +E + + + K FN K+L+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
[4Fe-4S], snirr, six-electron REDU phosphate complex;
HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
7gep_A* 8gep_A*
Length = 497
Score = 26.5 bits (59), Expect = 1.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 8/33 (24%)
Query: 16 FHYIWNLRDLDNVFQGM-------LFASGDCVR 41
FH I +++ V Q + L + D R
Sbjct: 49 FHGI-LKKNVKPVHQMLHSVGLDALATANDMNR 80
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
heme, electron transport, oxidoreductase; HET: SRM;
2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
d.134.1.1 d.134.1.1
Length = 608
Score = 26.6 bits (59), Expect = 1.2
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 8/33 (24%)
Query: 16 FHYIWNLRDLDNVFQGM-------LFASGDCVR 41
+ L D+ + +G+ L + D VR
Sbjct: 194 IRGV-VLPDVPEIIKGLESVGLTSLQSGMDNVR 225
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 25.4 bits (55), Expect = 2.2
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 18/76 (23%)
Query: 25 LDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYGDKM---------------VDKKDIE 69
+D + + S D S V M RV D M V ++ +
Sbjct: 254 IDQGYMKQILVSNDWTFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLA 313
Query: 70 TFNKMLVENIKKVFAV 85
+ V N + +
Sbjct: 314 ---GITVTNPARFLSP 326
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
3b0j_A* 3b0l_A* 3b0h_A*
Length = 591
Score = 25.4 bits (56), Expect = 2.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 8/33 (24%)
Query: 16 FHYIWNLRDLDNVFQGM-------LFASGDCVR 41
+ L D+ + +G+ L + D VR
Sbjct: 177 IRGV-VLPDVPEILKGLAEVGLTSLQSGMDNVR 208
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE UNL MES; 1.60A {Burkholderia
thailandensis E264}
Length = 122
Score = 24.6 bits (53), Expect = 3.4
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 1 MHTKLAQTFLPTAVKFHYIWNLRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEASRVYG 59
+ AQ F + ++ WN DLD + + + SS +V++ + R+ G
Sbjct: 5 ITQAFAQQF---SREWIDAWNAHDLDAI---LSHYADGFEMSSPMIVQIAGEPSGRLRG 57
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 24.4 bits (54), Expect = 4.8
Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 34 FASGDCVRSSSQLV 47
FA+GD VR +S LV
Sbjct: 413 FAAGDIVRGAS-LV 425
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 24.4 bits (53), Expect = 5.9
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 5 LAQTFLPTAVKFHYIWNLRDLDNVFQGM-------LFASGDC 39
L Q +L Y+WN +L LF GD
Sbjct: 233 LVQEWLAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDM 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.136 0.414
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,217,745
Number of extensions: 55450
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 14
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)