RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2656
         (85 letters)



>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
          {Arthromyces ramosus [TaxId: 5451]}
          Length = 336

 Score = 25.0 bits (54), Expect = 1.4
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 22 LRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEA 54
            D+ +  Q   +    C     +++R+  H+A
Sbjct: 18 WFDVLDDLQTNFYQGSKCESPVRKILRIVFHDA 50


>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
          basidiomycete (Phanerochaete chrysosporium) [TaxId:
          5306]}
          Length = 343

 Score = 24.2 bits (52), Expect = 2.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 22 LRDLDNVFQGMLFASGDCVRSSSQLVRLWMHEA 54
            D+ +  Q  +F  G C   + + +RL  H++
Sbjct: 17 WFDVLDDIQANMFHGGQCGAEAHESIRLVFHDS 49


>d2fhza1 d.311.1.1 (A:27-109) Colicin E5 immunity protein ImmE5
          {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 22.2 bits (47), Expect = 7.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 58 YGDKMVDKKDIETFNKMLVENIK 80
          Y      K  I   N++ +ENIK
Sbjct: 45 YDMPEEYKSKIPENNRLAIENIK 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 300,431
Number of extensions: 10738
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 5
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)