BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2657
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP 60
++ ++ + +P++L G GSGK++ + L + P + + S+ F+ T+ E+L K +
Sbjct: 1297 LHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD--FEVVSLNFSSATTPELLLKTFDHH 1354
Query: 61 LEKK---AGRNFGPPGN--KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQK 115
E K +G P K ++ F D++N+P D YGT + T IRQ ++ ++
Sbjct: 1355 CEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSD 1414
Query: 116 LSLKDIHNIMFVSAMNP--TSGSFTIEPRLQRH 146
+ + I FV A NP +G + R RH
Sbjct: 1415 HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP 60
++ ++ + +P++L G GSGK++ + L + P + + S+ F+ T+ E+L K +
Sbjct: 1297 LHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD--FEVVSLNFSSATTPELLLKTFDHH 1354
Query: 61 LEKK---AGRNFGPPGN--KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQK 115
E K +G P K ++ F D++N+P D YGT + T IRQ ++ ++
Sbjct: 1355 CEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSD 1414
Query: 116 LSLKDIHNIMFVSAMNP--TSGSFTIEPRLQRH 146
+ + I FV A NP +G + R RH
Sbjct: 1415 HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP---LEKK 64
++ ++L G GSGK++++N L + Y + + F+ T++E + L + +
Sbjct: 1267 KRGIILCGPPGSGKTMIMNNALRN--SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTS 1324
Query: 65 AGRNFGPPGN-KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHN 123
G P + K ++ F D++N+P++D YG+ +RQ M+ Q ++ + I
Sbjct: 1325 KGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIER 1384
Query: 124 IMFVSAMNPTS--GSFTIEPRLQRHFYVFAL 152
I V A NP + G + R RH + L
Sbjct: 1385 IHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP---LEKK 64
++ ++L G GSGK++++N L + Y + + F+ T++E + L + +
Sbjct: 1048 KRGIILCGPPGSGKTMIMNNALRN--SSLYDVVGINFSKDTTTEHILSALHRHTNYVTTS 1105
Query: 65 AGRNFGPPGN-KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHN 123
G P + K ++ F D++N+P++D YG+ +RQ M+ Q ++ + I
Sbjct: 1106 KGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIER 1165
Query: 124 IMFVSAMNPTS--GSFTIEPRLQRHFYVFAL 152
I V A NP + G + R RH + L
Sbjct: 1166 IHIVGACNPPTDPGRIPMSERFTRHAAILYL 1196
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.2 bits (69), Expect = 0.26, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSLPPET 36
+++ V+LIG G+GKS+L M LP ET
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTET 88
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLP 33
NL+ RK ++LIG +G G+S + N +LS P
Sbjct: 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 11 VMLIGNAGSGKSILINKMLSSL-PPETYALTSVPF 44
++LIGNAG GK+ L+ + L PP A V F
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF 63
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSIL 24
+NL IP K V L+G +GSGKS +
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTI 385
>pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae
Length = 365
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 4 FIPKR------KPVMLIGNAGSGKSILINKMLS 30
FIPK K V ++G SGKS+L+NK+ +
Sbjct: 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAA 192
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 29.6 bits (65), Expect = 0.77, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTS 41
+NL I K + V +G +G GKS LIN L P Y +TS
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLIN-----LIPRFYDVTS 395
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINK 27
M L IP+ V+LIG++GSGKS K
Sbjct: 2 MKLTIPELSLVVLIGSSGSGKSTFAKK 28
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSIL 24
+NL IP K V L+G +GSGKS +
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTI 385
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 5 IPKRKPVMLIGNAGSGKSILIN 26
IP+ K V L+G +GSGKS + N
Sbjct: 366 IPQGKTVALVGRSGSGKSTIAN 387
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSIL 24
+N FIP L+G+ GSGKS +
Sbjct: 39 INFFIPSGTTCALVGHTGSGKSTI 62
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF----NFYT-SSEMLQK 55
++L I + ++G + SGKS +I M +LPP L+ + T E L+K
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 56 VL--EKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHT 99
+ E L +A + P K + +F D V+A+G H+
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDT-----VEAHGVRWSHS 127
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 11 VMLIGNAGSGKSILINKM-LSSLPPE 35
+M++G +G GKS LIN + L+ L PE
Sbjct: 8 LMVVGESGLGKSTLINSLFLTDLYPE 33
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 3 LFIPKRKPVMLIGNAGSGKSILINK 27
L IP+ V+LIG++GSGKS K
Sbjct: 4 LTIPELSLVVLIGSSGSGKSTFAKK 28
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
Length = 274
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSS 50
IPK+ + IG +GKS+L N ++ L + + +F+ +S
Sbjct: 120 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLAS 165
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 11 VMLIGNAGSGKSILINKM-LSSLPPE 35
+M++G +G GKS LIN + L+ L PE
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPE 65
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKM 28
+NL + + V L+GN+G GKS + M
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLM 436
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKML 29
MNL + + V L+G++G GKS +I+ +L
Sbjct: 437 MNLRVNAGQTVALVGSSGCGKSTIISLLL 465
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
Length = 305
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSS 50
IPK+ + IG +GKS+L N ++ L + + +F+ +S
Sbjct: 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLAS 168
>pdb|2BJV|A Chain A, Crystal Structure Of Pspf(1-275) R168a Mutant
Length = 265
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 6 PKRKPVMLIGNAGSGKSILINKM 28
P KPV++IG G+GK ++ +++
Sbjct: 27 PLDKPVLIIGERGTGKELIASRL 49
>pdb|2BJW|A Chain A, Pspf Aaa Domain
pdb|2C96|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C98|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C99|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 6 PKRKPVMLIGNAGSGKSILINKM 28
P KPV++IG G+GK ++ +++
Sbjct: 27 PLDKPVLIIGERGTGKELIASRL 49
>pdb|2VII|A Chain A, Pspf1-275-mg-amp
Length = 259
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 6 PKRKPVMLIGNAGSGKSILINKM 28
P KPV++IG G+GK ++ +++
Sbjct: 27 PLDKPVLIIGERGTGKELIASRL 49
>pdb|2C9C|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 6 PKRKPVMLIGNAGSGKSILINKM 28
P KPV++IG G+GK ++ +++
Sbjct: 27 PLDKPVLIIGERGTGKELIASRL 49
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLP 33
+P+++ G +G+GKS L+ K+ + P
Sbjct: 18 RPIVISGPSGTGKSTLLKKLFAEYP 42
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate
Kinase And Its Substrate Gmp At 2.0 Angstroms
Resolution
Length = 187
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLP 33
+P+++ G +G+GKS L+ K+ + P
Sbjct: 3 RPIVISGPSGTGKSTLLKKLFAEYP 27
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLP 33
+P+++ G +G+GKS L+ K+ + P
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYP 26
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 10 PVMLIGNAGSGKSILINKMLSSLP 33
P+++ G +G GK LI K+L+ P
Sbjct: 25 PLVICGPSGVGKGTLIKKLLNEFP 48
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 26.2 bits (56), Expect = 8.7, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKM 28
+NL + + V L+GN+G GKS + M
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,967,440
Number of Sequences: 62578
Number of extensions: 202863
Number of successful extensions: 829
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 42
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)