Query psy2657
Match_columns 163
No_of_seqs 128 out of 2067
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 21:54:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12775 AAA_7: P-loop contain 100.0 2E-34 4.4E-39 219.1 8.7 162 2-163 27-189 (272)
2 COG1126 GlnQ ABC-type polar am 100.0 2.1E-30 4.6E-35 186.8 -2.8 132 1-148 21-176 (240)
3 COG1116 TauB ABC-type nitrate/ 99.9 1.2E-30 2.7E-35 192.1 -6.0 143 1-159 22-181 (248)
4 COG1125 OpuBA ABC-type proline 99.9 1.8E-28 3.9E-33 180.7 -6.1 136 1-148 20-175 (309)
5 COG1136 SalX ABC-type antimicr 99.9 4.1E-28 8.9E-33 178.1 -4.6 143 1-156 24-190 (226)
6 COG1127 Ttg2A ABC-type transpo 99.9 2.7E-27 5.9E-32 173.1 -1.1 144 1-157 27-194 (263)
7 COG3839 MalK ABC-type sugar tr 99.9 2.7E-28 5.9E-33 188.5 -6.9 134 1-148 22-173 (338)
8 COG1135 AbcC ABC-type metal io 99.9 1.7E-27 3.7E-32 179.7 -2.7 140 1-154 25-187 (339)
9 COG1124 DppF ABC-type dipeptid 99.9 3.4E-28 7.4E-33 178.2 -6.5 135 1-153 26-186 (252)
10 COG1120 FepC ABC-type cobalami 99.9 3.9E-28 8.4E-33 181.4 -6.8 136 1-150 21-180 (258)
11 COG3842 PotA ABC-type spermidi 99.9 6E-28 1.3E-32 187.5 -6.8 134 1-148 24-176 (352)
12 COG3638 ABC-type phosphate/pho 99.9 5.1E-28 1.1E-32 176.5 -7.5 145 1-159 23-198 (258)
13 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.2E-27 2.5E-32 178.2 -5.8 139 1-154 23-185 (254)
14 COG1131 CcmA ABC-type multidru 99.9 2.7E-27 5.9E-32 182.0 -5.7 142 1-158 24-186 (293)
15 COG2884 FtsE Predicted ATPase 99.9 1.7E-26 3.7E-31 163.6 -2.5 137 1-151 21-180 (223)
16 COG1122 CbiO ABC-type cobalt t 99.9 3.4E-26 7.5E-31 170.2 -1.3 143 1-157 23-187 (235)
17 COG0444 DppD ABC-type dipeptid 99.9 5.1E-27 1.1E-31 178.4 -8.4 142 1-153 24-198 (316)
18 COG4555 NatA ABC-type Na+ tran 99.9 1.3E-26 2.8E-31 165.7 -6.5 145 1-161 21-186 (245)
19 COG4525 TauB ABC-type taurine 99.9 1.9E-26 4E-31 164.4 -6.0 144 1-160 24-184 (259)
20 COG1118 CysA ABC-type sulfate/ 99.9 2.7E-26 6E-31 173.0 -5.9 137 1-151 21-180 (345)
21 COG4608 AppF ABC-type oligopep 99.9 1.7E-26 3.7E-31 172.2 -7.4 118 1-152 32-153 (268)
22 COG1123 ATPase components of v 99.9 4E-26 8.7E-31 184.6 -6.1 141 1-155 310-476 (539)
23 TIGR02314 ABC_MetN D-methionin 99.9 1.7E-25 3.7E-30 175.2 -4.3 139 1-153 24-185 (343)
24 COG3840 ThiQ ABC-type thiamine 99.9 5E-26 1.1E-30 160.4 -7.6 140 1-154 18-175 (231)
25 COG0410 LivF ABC-type branched 99.9 2.9E-25 6.3E-30 161.8 -4.8 138 1-151 22-179 (237)
26 cd03214 ABC_Iron-Siderophores_ 99.9 3.2E-24 6.9E-29 154.4 0.6 119 1-151 18-140 (180)
27 TIGR00960 3a0501s02 Type II (G 99.9 1.1E-24 2.5E-29 160.8 -1.9 139 1-153 22-183 (216)
28 COG4152 ABC-type uncharacteriz 99.9 1.6E-25 3.4E-30 164.3 -6.4 140 1-154 21-176 (300)
29 TIGR01186 proV glycine betaine 99.9 5.9E-26 1.3E-30 178.8 -9.5 140 1-154 12-175 (363)
30 COG0411 LivG ABC-type branched 99.9 1.9E-26 4.1E-31 169.1 -11.6 142 1-156 23-197 (250)
31 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.2E-24 4.8E-29 159.4 -1.1 140 1-154 23-186 (218)
32 TIGR01188 drrA daunorubicin re 99.9 1.3E-24 2.8E-29 168.1 -2.8 138 1-154 12-170 (302)
33 TIGR01184 ntrCD nitrate transp 99.9 1.7E-25 3.7E-30 166.8 -7.5 139 1-153 4-159 (230)
34 cd03259 ABC_Carb_Solutes_like 99.9 2.2E-25 4.8E-30 164.3 -6.9 139 1-153 19-175 (213)
35 cd03226 ABC_cobalt_CbiO_domain 99.9 1.2E-24 2.6E-29 159.5 -3.1 137 1-153 19-171 (205)
36 TIGR01166 cbiO cobalt transpor 99.9 1.1E-24 2.3E-29 158.0 -3.4 139 1-153 11-172 (190)
37 COG1137 YhbG ABC-type (unclass 99.9 5.5E-26 1.2E-30 162.3 -10.1 132 1-148 23-179 (243)
38 PRK11153 metN DL-methionine tr 99.9 7.6E-25 1.7E-29 171.9 -5.0 139 1-153 24-185 (343)
39 PRK13537 nodulation ABC transp 99.9 3.3E-25 7.1E-30 171.6 -6.9 138 1-154 26-184 (306)
40 PRK13536 nodulation factor exp 99.9 3.5E-25 7.5E-30 173.5 -7.0 138 1-154 60-218 (340)
41 PRK11650 ugpC glycerol-3-phosp 99.9 1.9E-24 4.1E-29 170.3 -2.9 136 1-150 23-176 (356)
42 cd03225 ABC_cobalt_CbiO_domain 99.9 2.4E-24 5.3E-29 158.4 -2.2 137 1-152 20-178 (211)
43 TIGR03265 PhnT2 putative 2-ami 99.9 3.9E-25 8.5E-30 174.0 -7.1 138 1-152 23-178 (353)
44 PRK11022 dppD dipeptide transp 99.9 3.8E-25 8.2E-30 172.5 -7.2 142 1-153 26-198 (326)
45 TIGR02673 FtsE cell division A 99.9 5E-24 1.1E-28 157.1 -0.9 139 1-153 21-182 (214)
46 PRK13637 cbiO cobalt transport 99.9 5.8E-25 1.2E-29 168.9 -6.2 141 1-153 26-189 (287)
47 cd03261 ABC_Org_Solvent_Resist 99.9 5.9E-24 1.3E-28 158.9 -0.9 139 1-153 19-181 (235)
48 PRK10851 sulfate/thiosulfate t 99.9 7.2E-25 1.6E-29 172.5 -6.2 138 1-152 21-180 (353)
49 cd03258 ABC_MetN_methionine_tr 99.9 1.7E-24 3.6E-29 161.6 -4.2 139 1-153 24-185 (233)
50 cd03256 ABC_PhnC_transporter A 99.9 6.3E-25 1.4E-29 164.6 -6.5 139 1-153 20-189 (241)
51 PRK11432 fbpC ferric transport 99.9 2.6E-24 5.6E-29 169.1 -3.4 137 1-151 25-179 (351)
52 COG1123 ATPase components of v 99.9 7.5E-25 1.6E-29 177.2 -7.0 141 1-153 28-199 (539)
53 cd03219 ABC_Mj1267_LivG_branch 99.9 2.7E-24 6E-29 160.7 -3.5 139 1-153 19-188 (236)
54 PRK15079 oligopeptide ABC tran 99.9 3.7E-25 8E-30 172.8 -8.6 139 1-152 40-205 (331)
55 TIGR02211 LolD_lipo_ex lipopro 99.9 8.9E-24 1.9E-28 156.5 -0.8 138 1-152 24-185 (221)
56 TIGR02315 ABC_phnC phosphonate 99.9 5.3E-24 1.2E-28 159.8 -2.1 138 1-152 21-189 (243)
57 PRK09452 potA putrescine/sperm 99.9 9E-25 2E-29 172.9 -6.6 137 1-151 33-187 (375)
58 cd03265 ABC_DrrA DrrA is the A 99.9 3.4E-24 7.4E-29 158.7 -3.2 137 1-153 19-176 (220)
59 cd03218 ABC_YhbG The ABC trans 99.9 3E-24 6.6E-29 160.1 -3.5 138 1-152 19-177 (232)
60 cd03292 ABC_FtsE_transporter F 99.9 5.4E-24 1.2E-28 156.9 -2.2 139 1-153 20-181 (214)
61 PRK11629 lolD lipoprotein tran 99.9 1.3E-23 2.8E-28 156.9 -0.5 138 1-152 28-189 (233)
62 cd03293 ABC_NrtD_SsuB_transpor 99.9 4.2E-25 9.1E-30 163.6 -8.6 136 1-152 23-175 (220)
63 TIGR03608 L_ocin_972_ABC putat 99.9 8.8E-24 1.9E-28 154.9 -1.6 137 1-151 17-177 (206)
64 PRK13538 cytochrome c biogenes 99.9 4.1E-24 8.8E-29 156.7 -3.6 136 1-152 20-173 (204)
65 PRK10070 glycine betaine trans 99.9 2.7E-24 5.8E-29 171.3 -5.0 140 1-154 47-210 (400)
66 PRK09536 btuD corrinoid ABC tr 99.9 9.7E-24 2.1E-28 168.2 -1.9 139 1-154 22-185 (402)
67 TIGR03522 GldA_ABC_ATP gliding 99.9 5.7E-24 1.2E-28 164.4 -3.2 138 1-154 21-179 (301)
68 COG4175 ProV ABC-type proline/ 99.9 1.3E-24 2.7E-29 164.6 -6.7 135 1-149 47-205 (386)
69 cd03269 ABC_putative_ATPase Th 99.9 3.2E-24 7E-29 157.7 -4.5 136 1-152 19-172 (210)
70 cd03266 ABC_NatA_sodium_export 99.9 8.1E-25 1.8E-29 161.7 -7.8 137 1-153 24-181 (218)
71 cd03301 ABC_MalK_N The N-termi 99.9 5.6E-24 1.2E-28 156.7 -3.7 139 1-153 19-175 (213)
72 cd03263 ABC_subfamily_A The AB 99.9 5.7E-24 1.2E-28 157.4 -3.7 135 1-151 21-176 (220)
73 PRK13650 cbiO cobalt transport 99.9 9.8E-25 2.1E-29 167.0 -8.1 138 1-153 26-185 (279)
74 PRK11000 maltose/maltodextrin 99.9 8.2E-24 1.8E-28 167.5 -3.1 135 1-149 22-174 (369)
75 cd03268 ABC_BcrA_bacitracin_re 99.9 5.9E-24 1.3E-28 156.1 -3.8 135 1-152 19-170 (208)
76 PRK10584 putative ABC transpor 99.9 2.3E-23 5E-28 155.0 -0.8 139 1-153 29-191 (228)
77 cd03294 ABC_Pro_Gly_Bertaine T 99.9 9.9E-25 2.1E-29 166.2 -8.5 139 1-153 43-205 (269)
78 PRK13644 cbiO cobalt transport 99.9 9.5E-24 2.1E-28 161.2 -3.2 137 1-151 21-179 (274)
79 cd03216 ABC_Carb_Monos_I This 99.9 6.3E-23 1.4E-27 145.5 1.2 104 1-152 19-126 (163)
80 cd03262 ABC_HisP_GlnQ_permease 99.9 2E-23 4.3E-28 153.7 -1.5 138 1-152 19-179 (213)
81 PRK10908 cell division protein 99.9 2.5E-23 5.5E-28 154.2 -1.0 138 1-152 21-181 (222)
82 PRK09473 oppD oligopeptide tra 99.9 2E-24 4.2E-29 168.7 -7.3 142 1-153 35-206 (330)
83 PRK13646 cbiO cobalt transport 99.9 2.1E-24 4.4E-29 165.8 -7.2 139 1-153 26-190 (286)
84 PRK13634 cbiO cobalt transport 99.9 2.2E-24 4.7E-29 165.9 -7.1 139 1-153 26-190 (290)
85 TIGR03258 PhnT 2-aminoethylpho 99.9 1.1E-23 2.3E-28 166.2 -3.4 139 1-153 24-182 (362)
86 cd03235 ABC_Metallic_Cations A 99.9 7.6E-24 1.6E-28 156.1 -4.1 138 1-153 18-177 (213)
87 PRK11248 tauB taurine transpor 99.9 9.6E-24 2.1E-28 159.6 -3.7 136 1-152 20-172 (255)
88 cd03224 ABC_TM1139_LivF_branch 99.9 9.4E-24 2E-28 156.4 -3.8 139 1-153 19-177 (222)
89 PRK11607 potG putrescine trans 99.9 1.4E-23 3E-28 166.4 -3.1 134 1-148 38-189 (377)
90 cd03231 ABC_CcmA_heme_exporter 99.9 2.3E-23 5E-28 152.4 -1.8 137 1-153 19-170 (201)
91 COG4619 ABC-type uncharacteriz 99.9 4.6E-23 1E-27 143.9 -0.3 135 1-148 22-173 (223)
92 PRK15093 antimicrobial peptide 99.9 2.8E-24 6E-29 168.0 -7.4 142 1-153 26-203 (330)
93 cd03296 ABC_CysA_sulfate_impor 99.9 1.6E-23 3.4E-28 157.0 -3.0 139 1-153 21-181 (239)
94 PRK13638 cbiO cobalt transport 99.9 2.5E-23 5.3E-28 158.7 -2.0 139 1-153 20-181 (271)
95 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.8E-23 3.9E-28 156.4 -2.7 137 1-153 20-177 (236)
96 PRK13635 cbiO cobalt transport 99.9 3.7E-24 8.1E-29 163.8 -6.6 138 1-153 26-185 (279)
97 COG4172 ABC-type uncharacteriz 99.9 1.3E-23 2.9E-28 163.6 -3.5 134 1-147 306-465 (534)
98 TIGR01288 nodI ATP-binding ABC 99.9 1.6E-23 3.5E-28 162.0 -3.2 137 1-153 23-180 (303)
99 PRK10247 putative ABC transpor 99.9 1.9E-23 4E-28 155.3 -2.9 135 1-150 26-179 (225)
100 PRK13647 cbiO cobalt transport 99.9 9.2E-24 2E-28 161.3 -4.7 138 1-153 24-183 (274)
101 TIGR01189 ccmA heme ABC export 99.9 1.1E-23 2.5E-28 153.6 -4.0 137 1-153 19-172 (198)
102 PRK13636 cbiO cobalt transport 99.9 4.1E-24 8.9E-29 163.9 -6.7 139 1-153 25-186 (283)
103 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.2E-23 4.7E-28 153.4 -2.6 135 1-152 17-172 (211)
104 PRK11308 dppF dipeptide transp 99.9 2.6E-24 5.6E-29 167.9 -8.0 139 1-152 34-198 (327)
105 TIGR03410 urea_trans_UrtE urea 99.9 1.5E-23 3.2E-28 156.2 -3.6 139 1-153 19-176 (230)
106 PRK13543 cytochrome c biogenes 99.9 2.7E-24 5.8E-29 158.7 -7.6 135 1-153 30-182 (214)
107 PRK13643 cbiO cobalt transport 99.8 2.5E-23 5.4E-28 159.9 -2.6 138 1-151 25-187 (288)
108 PRK11300 livG leucine/isoleuci 99.8 1.8E-23 3.9E-28 158.0 -3.4 139 1-153 24-198 (255)
109 cd03264 ABC_drug_resistance_li 99.8 1.6E-23 3.4E-28 154.2 -3.7 135 1-152 19-174 (211)
110 TIGR03411 urea_trans_UrtD urea 99.8 2.1E-23 4.5E-28 156.5 -3.1 138 1-152 21-187 (242)
111 cd03295 ABC_OpuCA_Osmoprotecti 99.8 9.4E-24 2E-28 158.5 -5.0 138 1-151 20-178 (242)
112 PRK10895 lipopolysaccharide AB 99.8 2E-23 4.3E-28 156.6 -3.3 136 1-150 22-179 (241)
113 TIGR03415 ABC_choXWV_ATP choli 99.8 1.3E-23 2.8E-28 166.4 -4.5 140 1-154 43-210 (382)
114 TIGR02769 nickel_nikE nickel i 99.8 5.1E-24 1.1E-28 161.9 -6.7 138 1-152 30-194 (265)
115 TIGR02142 modC_ABC molybdenum 99.8 1.9E-24 4.1E-29 170.4 -9.4 138 1-152 16-175 (354)
116 PRK11247 ssuB aliphatic sulfon 99.8 1.2E-23 2.7E-28 159.1 -4.6 137 1-151 31-176 (257)
117 PRK13540 cytochrome c biogenes 99.8 1.5E-23 3.3E-28 153.2 -4.0 137 1-153 20-172 (200)
118 PRK11831 putative ABC transpor 99.8 5.9E-23 1.3E-27 156.4 -1.0 138 1-152 26-187 (269)
119 PRK10771 thiQ thiamine transpo 99.8 4E-24 8.7E-29 159.5 -7.3 132 1-149 18-170 (232)
120 PRK13641 cbiO cobalt transport 99.8 2.2E-23 4.7E-28 160.2 -3.6 139 1-153 26-190 (287)
121 PRK11264 putative amino-acid A 99.8 5.5E-24 1.2E-28 160.4 -6.9 137 1-151 22-187 (250)
122 PRK13633 cobalt transporter AT 99.8 6E-23 1.3E-27 157.2 -1.3 138 1-152 29-188 (280)
123 PRK13539 cytochrome c biogenes 99.8 1.6E-23 3.5E-28 153.8 -4.3 134 1-153 21-172 (207)
124 cd03229 ABC_Class3 This class 99.8 2.5E-22 5.3E-27 144.3 1.7 120 1-151 19-143 (178)
125 PRK09493 glnQ glutamine ABC tr 99.8 6.3E-23 1.4E-27 153.8 -1.5 138 1-152 20-180 (240)
126 PRK14250 phosphate ABC transpo 99.8 2.4E-23 5.3E-28 156.2 -3.9 137 1-152 22-175 (241)
127 PRK15112 antimicrobial peptide 99.8 1.8E-23 4E-28 159.1 -4.7 137 1-152 32-193 (267)
128 cd03257 ABC_NikE_OppD_transpor 99.8 3.6E-23 7.8E-28 153.8 -3.0 140 1-153 24-190 (228)
129 PRK13639 cbiO cobalt transport 99.8 5.8E-23 1.3E-27 156.9 -2.0 139 1-153 21-182 (275)
130 PRK13631 cbiO cobalt transport 99.8 4.1E-23 8.8E-28 160.7 -3.0 138 1-151 45-219 (320)
131 cd03246 ABCC_Protease_Secretio 99.8 9.1E-22 2E-26 140.8 4.1 117 1-153 21-141 (173)
132 PRK10938 putative molybdenum t 99.8 4.2E-23 9.1E-28 169.0 -3.3 138 1-153 22-180 (490)
133 PRK13651 cobalt transporter AT 99.8 6.4E-23 1.4E-27 158.7 -2.2 139 1-152 26-209 (305)
134 COG4598 HisP ABC-type histidin 99.8 5.3E-23 1.2E-27 145.2 -2.5 132 1-146 25-190 (256)
135 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 4.3E-23 9.3E-28 153.3 -3.2 135 1-151 41-185 (224)
136 COG1117 PstB ABC-type phosphat 99.8 1.7E-22 3.7E-27 145.8 -0.1 136 1-147 26-188 (253)
137 PRK13652 cbiO cobalt transport 99.8 6E-23 1.3E-27 157.0 -2.6 138 1-153 23-182 (277)
138 cd03267 ABC_NatA_like Similar 99.8 1.1E-23 2.4E-28 157.6 -6.7 137 1-153 40-198 (236)
139 PRK13541 cytochrome c biogenes 99.8 2.5E-23 5.5E-28 151.5 -4.7 135 1-151 19-166 (195)
140 cd03260 ABC_PstB_phosphate_tra 99.8 1.9E-23 4.1E-28 155.3 -5.4 137 1-151 19-184 (227)
141 PRK10762 D-ribose transporter 99.8 9.7E-23 2.1E-27 167.3 -1.8 135 1-149 23-182 (501)
142 cd03228 ABCC_MRP_Like The MRP 99.8 1.2E-21 2.5E-26 140.0 3.9 116 1-152 21-140 (171)
143 PRK13648 cbiO cobalt transport 99.8 3E-23 6.4E-28 158.1 -4.6 138 1-153 28-187 (269)
144 PRK11144 modC molybdate transp 99.8 6.8E-23 1.5E-27 161.4 -2.7 136 1-150 17-170 (352)
145 cd03237 ABC_RNaseL_inhibitor_d 99.8 7.7E-24 1.7E-28 159.3 -7.9 129 3-151 20-158 (246)
146 PRK13649 cbiO cobalt transport 99.8 4.4E-23 9.5E-28 157.9 -3.9 139 1-152 26-189 (280)
147 cd03215 ABC_Carb_Monos_II This 99.8 1.3E-22 2.8E-27 146.3 -1.3 125 1-153 19-149 (182)
148 TIGR03740 galliderm_ABC gallid 99.8 3.1E-23 6.7E-28 153.9 -4.9 137 1-153 19-169 (223)
149 PRK11124 artP arginine transpo 99.8 7.1E-23 1.5E-27 153.7 -3.1 138 1-152 21-185 (242)
150 PRK10575 iron-hydroxamate tran 99.8 3.9E-23 8.5E-28 157.1 -4.5 137 1-152 30-191 (265)
151 PRK15439 autoinducer 2 ABC tra 99.8 7.3E-23 1.6E-27 168.3 -3.4 138 1-152 30-184 (510)
152 PRK13640 cbiO cobalt transport 99.8 6E-23 1.3E-27 157.4 -3.8 136 1-151 26-186 (282)
153 TIGR01277 thiQ thiamine ABC tr 99.8 1.9E-23 4.2E-28 154.0 -6.3 138 1-152 17-172 (213)
154 cd03247 ABCC_cytochrome_bd The 99.8 3.1E-22 6.7E-27 143.8 -0.0 117 1-151 21-141 (178)
155 PRK09700 D-allose transporter 99.8 8.8E-23 1.9E-27 167.8 -3.2 138 1-152 24-189 (510)
156 PRK09984 phosphonate/organopho 99.8 1.5E-23 3.3E-28 159.0 -7.3 139 1-153 23-197 (262)
157 TIGR03005 ectoine_ehuA ectoine 99.8 8.8E-23 1.9E-27 154.0 -3.3 136 1-150 19-188 (252)
158 TIGR02770 nickel_nikD nickel i 99.8 4.4E-23 9.4E-28 153.8 -4.9 137 1-151 5-168 (230)
159 cd03297 ABC_ModC_molybdenum_tr 99.8 1.7E-23 3.7E-28 154.4 -7.3 137 1-152 17-175 (214)
160 PRK13548 hmuV hemin importer A 99.8 4.7E-23 1E-27 156.1 -5.0 138 1-153 21-185 (258)
161 PRK10418 nikD nickel transport 99.8 7.1E-23 1.5E-27 154.8 -4.1 137 1-151 22-183 (254)
162 PRK11231 fecE iron-dicitrate t 99.8 3.2E-23 7E-28 156.7 -6.1 138 1-153 21-183 (255)
163 PRK10253 iron-enterobactin tra 99.8 3.9E-23 8.4E-28 157.1 -5.7 136 1-151 26-186 (265)
164 PRK03695 vitamin B12-transport 99.8 2.2E-23 4.7E-28 157.1 -7.1 138 1-153 15-178 (248)
165 cd03234 ABCG_White The White s 99.8 2.1E-22 4.6E-27 149.7 -1.9 134 1-152 26-187 (226)
166 cd03245 ABCC_bacteriocin_expor 99.8 5.5E-23 1.2E-27 152.2 -5.0 139 1-153 23-185 (220)
167 PRK14247 phosphate ABC transpo 99.8 1.7E-22 3.7E-27 152.3 -2.4 139 1-151 22-189 (250)
168 TIGR03873 F420-0_ABC_ATP propo 99.8 5.3E-23 1.1E-27 155.6 -5.2 138 1-153 20-182 (256)
169 PRK11614 livF leucine/isoleuci 99.8 5E-23 1.1E-27 154.1 -5.3 136 1-152 24-181 (237)
170 COG4604 CeuD ABC-type enteroch 99.8 1.9E-21 4.1E-26 139.0 3.0 128 1-142 20-169 (252)
171 PRK13645 cbiO cobalt transport 99.8 1.4E-22 3E-27 155.9 -3.4 137 1-151 30-193 (289)
172 cd03251 ABCC_MsbA MsbA is an e 99.8 6.8E-22 1.5E-26 147.5 0.4 135 1-152 21-182 (234)
173 PRK13549 xylose transporter AT 99.8 2.7E-22 5.8E-27 164.8 -2.1 139 1-153 24-188 (506)
174 PRK10619 histidine/lysine/argi 99.8 1.1E-22 2.4E-27 154.0 -4.1 137 1-150 24-194 (257)
175 PRK15056 manganese/iron transp 99.8 1.1E-22 2.4E-27 155.2 -4.1 139 1-153 26-187 (272)
176 cd03222 ABC_RNaseL_inhibitor T 99.8 9E-22 1.9E-26 141.1 0.8 89 3-149 20-112 (177)
177 PRK13632 cbiO cobalt transport 99.8 1.1E-22 2.5E-27 155.0 -4.0 137 1-152 28-186 (271)
178 TIGR02323 CP_lyasePhnK phospho 99.8 1.6E-22 3.6E-27 152.6 -3.4 138 1-151 22-191 (253)
179 PRK09544 znuC high-affinity zi 99.8 6.1E-23 1.3E-27 154.9 -5.7 131 1-150 23-162 (251)
180 PRK15177 Vi polysaccharide exp 99.8 4.7E-23 1E-27 152.1 -6.3 129 1-148 6-144 (213)
181 PRK09700 D-allose transporter 99.8 5.1E-22 1.1E-26 163.3 -1.1 137 1-151 282-452 (510)
182 TIGR02982 heterocyst_DevA ABC 99.8 1.9E-22 4.1E-27 149.4 -3.4 137 1-151 24-184 (220)
183 PRK13642 cbiO cobalt transport 99.8 1.1E-22 2.4E-27 155.6 -4.8 137 1-152 26-184 (277)
184 cd03230 ABC_DR_subfamily_A Thi 99.8 1E-21 2.2E-26 140.6 0.4 117 1-152 19-139 (173)
185 COG4181 Predicted ABC-type tra 99.8 1.8E-22 3.9E-27 141.4 -3.4 144 1-159 29-197 (228)
186 PRK11701 phnK phosphonate C-P 99.8 2.4E-22 5.1E-27 152.2 -3.0 138 1-151 25-194 (258)
187 cd03248 ABCC_TAP TAP, the Tran 99.8 1.6E-22 3.5E-27 150.2 -4.0 139 1-153 33-195 (226)
188 PRK10982 galactose/methyl gala 99.8 3.1E-22 6.7E-27 163.9 -2.7 137 1-151 17-177 (491)
189 cd03254 ABCC_Glucan_exporter_l 99.8 1.7E-22 3.7E-27 150.3 -3.9 139 1-151 22-182 (229)
190 cd03233 ABC_PDR_domain1 The pl 99.8 4.6E-22 1E-26 145.6 -1.5 130 1-153 26-163 (202)
191 COG2274 SunT ABC-type bacterio 99.8 5E-22 1.1E-26 167.2 -1.6 138 1-147 492-648 (709)
192 TIGR00972 3a0107s01c2 phosphat 99.8 1.7E-22 3.6E-27 152.1 -4.0 141 1-152 20-188 (247)
193 cd03300 ABC_PotA_N PotA is an 99.8 7.8E-23 1.7E-27 152.6 -5.8 136 1-153 19-175 (232)
194 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 3E-22 6.6E-27 149.8 -2.8 141 1-153 22-184 (238)
195 PRK11288 araG L-arabinose tran 99.8 4.2E-22 9.1E-27 163.5 -2.3 139 1-153 23-185 (501)
196 TIGR01978 sufC FeS assembly AT 99.8 2.1E-22 4.5E-27 151.1 -3.8 140 1-153 19-189 (243)
197 cd03223 ABCD_peroxisomal_ALDP 99.8 1.5E-21 3.3E-26 138.8 0.7 107 1-148 20-131 (166)
198 PRK10261 glutathione transport 99.8 6.9E-23 1.5E-27 171.8 -7.2 142 1-153 35-213 (623)
199 COG4172 ABC-type uncharacteriz 99.8 4.6E-22 1E-26 155.1 -2.2 136 1-147 29-196 (534)
200 PRK15134 microcin C ABC transp 99.8 2.9E-22 6.2E-27 165.4 -3.6 141 1-152 28-200 (529)
201 TIGR02324 CP_lyasePhnL phospho 99.8 1.4E-22 3.1E-27 150.4 -5.0 140 1-153 27-194 (224)
202 cd03252 ABCC_Hemolysin The ABC 99.8 2.1E-22 4.5E-27 150.7 -4.1 140 1-152 21-182 (237)
203 PRK11288 araG L-arabinose tran 99.8 4.3E-22 9.2E-27 163.5 -2.7 136 1-150 272-438 (501)
204 COG3845 ABC-type uncharacteriz 99.8 1.3E-22 2.7E-27 161.2 -5.6 134 1-148 23-180 (501)
205 cd03238 ABC_UvrA The excision 99.8 5.4E-22 1.2E-26 142.1 -2.1 115 1-151 14-132 (176)
206 COG4133 CcmA ABC-type transpor 99.8 2E-22 4.4E-27 142.7 -4.3 137 1-151 21-173 (209)
207 PRK15439 autoinducer 2 ABC tra 99.8 4.2E-22 9.1E-27 163.8 -3.2 138 1-152 282-447 (510)
208 TIGR03771 anch_rpt_ABC anchore 99.8 7E-22 1.5E-26 146.7 -1.9 136 3-153 1-158 (223)
209 KOG0058|consensus 99.8 1.6E-21 3.4E-26 160.8 -0.2 133 1-142 487-638 (716)
210 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2.7E-21 5.8E-26 134.5 1.0 89 1-149 19-111 (144)
211 PRK14259 phosphate ABC transpo 99.8 3E-22 6.4E-27 152.6 -4.2 141 1-152 32-198 (269)
212 PRK10261 glutathione transport 99.8 1.3E-22 2.8E-27 170.2 -6.9 140 1-153 343-508 (623)
213 PRK14267 phosphate ABC transpo 99.8 5.1E-22 1.1E-26 149.9 -3.2 141 1-152 23-193 (253)
214 PRK10762 D-ribose transporter 99.8 1.3E-22 2.8E-27 166.5 -7.2 140 1-154 271-441 (501)
215 COG4674 Uncharacterized ABC-ty 99.8 1.1E-21 2.3E-26 140.0 -1.7 130 1-144 24-183 (249)
216 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.3E-21 2.9E-26 143.0 -1.2 125 1-153 19-149 (200)
217 cd03253 ABCC_ATM1_transporter 99.8 2E-21 4.2E-26 145.3 -0.5 140 1-152 20-181 (236)
218 cd03299 ABC_ModC_like Archeal 99.8 4.4E-22 9.6E-27 148.8 -4.0 136 1-153 18-174 (235)
219 PRK10938 putative molybdenum t 99.8 8.9E-22 1.9E-26 161.2 -2.8 139 1-153 279-446 (490)
220 PRK13547 hmuV hemin importer A 99.8 8.1E-22 1.8E-26 150.4 -3.1 137 1-152 20-198 (272)
221 cd03244 ABCC_MRP_domain2 Domai 99.8 4.1E-22 9E-27 147.5 -4.8 138 1-152 23-183 (221)
222 COG1129 MglA ABC-type sugar tr 99.8 3.1E-22 6.7E-27 161.1 -6.0 133 1-147 27-184 (500)
223 PRK10982 galactose/methyl gala 99.8 8.8E-22 1.9E-26 161.3 -3.5 138 1-151 267-434 (491)
224 PRK10419 nikE nickel transport 99.8 6.7E-22 1.4E-26 150.6 -4.0 135 1-149 31-192 (268)
225 PRK13546 teichoic acids export 99.8 2.1E-22 4.6E-27 152.9 -6.7 134 1-150 43-185 (264)
226 TIGR00968 3a0106s01 sulfate AB 99.8 8.1E-22 1.8E-26 147.6 -3.5 137 1-152 19-174 (237)
227 COG1119 ModF ABC-type molybden 99.8 2.5E-20 5.5E-25 137.1 4.3 131 1-145 50-208 (257)
228 PRK14273 phosphate ABC transpo 99.8 5.8E-22 1.3E-26 149.7 -4.5 142 1-153 26-195 (254)
229 TIGR02868 CydC thiol reductant 99.8 1.8E-21 4E-26 160.6 -2.0 137 1-150 354-512 (529)
230 COG4136 ABC-type uncharacteriz 99.8 2.2E-22 4.7E-27 138.3 -6.3 143 1-157 21-183 (213)
231 PRK15134 microcin C ABC transp 99.8 8.7E-22 1.9E-26 162.6 -4.0 140 1-153 305-470 (529)
232 cd03250 ABCC_MRP_domain1 Domai 99.8 1.1E-21 2.4E-26 143.7 -3.0 136 1-149 24-168 (204)
233 PRK14268 phosphate ABC transpo 99.8 1.9E-21 4.2E-26 147.2 -2.0 141 1-152 31-198 (258)
234 TIGR02633 xylG D-xylose ABC tr 99.8 9.8E-22 2.1E-26 161.3 -3.9 138 1-151 20-184 (500)
235 PRK14241 phosphate transporter 99.8 6.8E-22 1.5E-26 149.7 -4.7 140 1-151 23-191 (258)
236 PRK14235 phosphate transporter 99.8 1.1E-21 2.4E-26 149.2 -3.6 140 1-151 38-206 (267)
237 cd03289 ABCC_CFTR2 The CFTR su 99.8 5.1E-22 1.1E-26 151.6 -5.5 142 1-152 23-182 (275)
238 CHL00131 ycf16 sulfate ABC tra 99.8 2.4E-22 5.3E-27 151.6 -7.3 140 1-153 26-196 (252)
239 PRK13549 xylose transporter AT 99.8 3.4E-21 7.3E-26 158.3 -1.5 139 1-152 281-449 (506)
240 PRK11176 lipid transporter ATP 99.8 1.2E-20 2.6E-25 157.3 1.6 137 1-148 362-520 (582)
241 COG4586 ABC-type uncharacteriz 99.8 1.3E-21 2.8E-26 145.8 -3.9 144 1-159 43-207 (325)
242 PRK09580 sufC cysteine desulfu 99.8 8.8E-22 1.9E-26 148.1 -5.0 137 1-150 20-187 (248)
243 PRK13545 tagH teichoic acids e 99.8 1.3E-21 2.8E-26 159.0 -4.5 133 1-149 43-184 (549)
244 PRK14269 phosphate ABC transpo 99.8 1.9E-21 4.1E-26 146.3 -3.5 140 1-152 21-186 (246)
245 PRK14242 phosphate transporter 99.8 1.5E-21 3.3E-26 147.3 -4.0 141 1-152 25-193 (253)
246 TIGR02633 xylG D-xylose ABC tr 99.8 5.5E-21 1.2E-25 156.9 -1.1 136 1-149 279-444 (500)
247 TIGR03269 met_CoM_red_A2 methy 99.8 3.5E-22 7.5E-27 164.6 -8.3 137 1-151 19-211 (520)
248 PRK14244 phosphate ABC transpo 99.8 4E-21 8.6E-26 144.9 -2.1 140 1-151 24-192 (251)
249 PRK14270 phosphate ABC transpo 99.8 6.2E-21 1.3E-25 143.9 -1.3 140 1-151 23-190 (251)
250 PRK10744 pstB phosphate transp 99.8 2.7E-22 5.8E-27 152.1 -8.8 140 1-151 32-199 (260)
251 cd03213 ABCG_EPDR ABCG transpo 99.8 5.1E-20 1.1E-24 134.0 3.5 116 1-151 28-154 (194)
252 PRK10636 putative ABC transpor 99.8 2E-21 4.4E-26 163.3 -4.5 132 1-150 331-472 (638)
253 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.7E-21 8.1E-26 141.2 -2.6 136 1-152 27-169 (207)
254 PRK14253 phosphate ABC transpo 99.8 5.7E-21 1.2E-25 143.9 -1.7 140 1-153 22-190 (249)
255 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.7E-20 3.6E-25 159.2 0.9 136 1-148 472-628 (686)
256 PRK14245 phosphate ABC transpo 99.8 2.8E-21 6.2E-26 145.7 -3.4 142 1-153 22-191 (250)
257 PRK14251 phosphate ABC transpo 99.8 2.9E-21 6.2E-26 145.7 -3.4 141 1-152 23-191 (251)
258 PRK14275 phosphate ABC transpo 99.8 2.8E-21 6.1E-26 148.4 -3.6 140 1-151 58-225 (286)
259 PRK14249 phosphate ABC transpo 99.8 7.4E-21 1.6E-25 143.5 -1.3 141 1-152 23-191 (251)
260 PF00005 ABC_tran: ABC transpo 99.8 1.3E-22 2.9E-27 139.5 -10.0 125 1-134 4-137 (137)
261 TIGR03269 met_CoM_red_A2 methy 99.8 1.7E-21 3.6E-26 160.6 -5.3 141 1-152 303-471 (520)
262 COG4161 ArtP ABC-type arginine 99.8 8.1E-21 1.8E-25 132.2 -1.2 136 1-150 21-183 (242)
263 PRK14256 phosphate ABC transpo 99.8 5.8E-21 1.3E-25 144.1 -2.2 139 1-150 23-190 (252)
264 PRK11174 cysteine/glutathione 99.8 7.3E-21 1.6E-25 158.8 -1.9 136 1-148 369-525 (588)
265 PRK14240 phosphate transporter 99.8 6.1E-21 1.3E-25 143.8 -2.1 138 1-151 22-189 (250)
266 PRK15064 ABC transporter ATP-b 99.8 5.8E-21 1.3E-25 157.7 -2.5 138 1-151 20-198 (530)
267 TIGR01257 rim_protein retinal- 99.8 4.5E-21 9.8E-26 174.6 -3.6 138 1-154 1958-2116(2272)
268 cd03232 ABC_PDR_domain2 The pl 99.8 8.3E-20 1.8E-24 132.7 3.6 115 1-151 26-151 (192)
269 PRK14274 phosphate ABC transpo 99.8 3.2E-21 6.9E-26 146.1 -4.0 140 1-151 31-198 (259)
270 PRK14261 phosphate ABC transpo 99.8 3.4E-21 7.5E-26 145.4 -3.9 141 1-152 25-193 (253)
271 PRK14272 phosphate ABC transpo 99.8 6.1E-21 1.3E-25 143.9 -2.6 140 1-151 23-191 (252)
272 cd03236 ABC_RNaseL_inhibitor_d 99.8 4E-21 8.7E-26 145.3 -3.6 129 4-147 22-178 (255)
273 COG4987 CydC ABC-type transpor 99.8 7.5E-21 1.6E-25 152.5 -2.3 136 1-147 357-513 (573)
274 TIGR01257 rim_protein retinal- 99.8 5.6E-21 1.2E-25 174.0 -3.6 138 1-154 949-1107(2272)
275 cd00267 ABC_ATPase ABC (ATP-bi 99.8 3.5E-20 7.7E-25 130.5 1.1 104 1-153 18-125 (157)
276 PRK14262 phosphate ABC transpo 99.8 8.4E-21 1.8E-25 143.1 -2.2 141 1-152 22-190 (250)
277 PRK14243 phosphate transporter 99.8 2.7E-21 5.8E-26 146.9 -5.0 138 1-151 29-194 (264)
278 PRK14254 phosphate ABC transpo 99.8 1.5E-21 3.3E-26 149.8 -6.4 139 1-150 58-222 (285)
279 PRK13409 putative ATPase RIL; 99.8 8.9E-22 1.9E-26 163.9 -8.5 131 1-153 358-498 (590)
280 PRK14265 phosphate ABC transpo 99.8 9.7E-21 2.1E-25 144.6 -2.1 140 1-153 39-206 (274)
281 COG4167 SapF ABC-type antimicr 99.8 1.8E-21 3.9E-26 137.9 -5.7 139 1-153 32-194 (267)
282 TIGR02857 CydD thiol reductant 99.8 6.3E-21 1.4E-25 157.4 -3.5 137 1-149 341-499 (529)
283 PRK14271 phosphate ABC transpo 99.8 5.5E-21 1.2E-25 146.1 -3.6 138 1-149 40-204 (276)
284 PRK14260 phosphate ABC transpo 99.8 4.9E-21 1.1E-25 145.1 -3.9 142 1-153 26-195 (259)
285 cd03288 ABCC_SUR2 The SUR doma 99.8 5.6E-21 1.2E-25 144.6 -3.6 137 1-151 40-199 (257)
286 TIGR02203 MsbA_lipidA lipid A 99.8 4.2E-20 9.2E-25 153.7 1.3 136 1-148 351-509 (571)
287 PLN03211 ABC transporter G-25; 99.8 1.2E-20 2.5E-25 158.9 -2.1 141 1-152 87-250 (659)
288 PRK14239 phosphate transporter 99.8 7.9E-21 1.7E-25 143.3 -2.9 140 1-151 24-191 (252)
289 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 7.9E-21 1.7E-25 161.7 -3.4 136 1-148 498-655 (710)
290 PRK14238 phosphate transporter 99.8 9.4E-21 2E-25 144.5 -2.8 140 1-151 43-210 (271)
291 PRK11160 cysteine/glutathione 99.8 7.7E-21 1.7E-25 158.3 -3.6 137 1-149 359-516 (574)
292 PRK15064 ABC transporter ATP-b 99.8 6.3E-21 1.4E-25 157.5 -4.1 129 1-149 338-479 (530)
293 PRK14263 phosphate ABC transpo 99.8 6.2E-21 1.4E-25 144.7 -3.8 140 1-151 27-192 (261)
294 PRK10790 putative multidrug tr 99.8 7.2E-21 1.6E-25 159.0 -3.9 137 1-148 360-516 (592)
295 cd03290 ABCC_SUR1_N The SUR do 99.8 2E-21 4.4E-26 143.6 -6.5 136 1-147 20-179 (218)
296 PRK14264 phosphate ABC transpo 99.8 7.2E-21 1.6E-25 147.4 -3.8 139 1-150 64-242 (305)
297 TIGR00958 3a01208 Conjugate Tr 99.8 1E-20 2.2E-25 160.9 -3.2 138 1-149 500-658 (711)
298 PRK10636 putative ABC transpor 99.8 1.6E-20 3.5E-25 157.9 -2.2 137 1-150 20-191 (638)
299 PRK14237 phosphate transporter 99.8 1.7E-20 3.8E-25 142.7 -1.9 141 1-152 39-207 (267)
300 PRK11819 putative ABC transpor 99.8 9.5E-21 2.1E-25 157.2 -3.7 132 1-149 343-486 (556)
301 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 9.9E-21 2.2E-25 157.0 -3.6 132 1-149 341-484 (552)
302 COG0396 sufC Cysteine desulfur 99.8 6E-20 1.3E-24 133.9 0.7 130 1-146 23-182 (251)
303 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.5E-20 3.3E-25 156.0 -2.7 136 1-148 361-510 (555)
304 PRK14248 phosphate ABC transpo 99.8 1.3E-20 2.7E-25 143.5 -3.0 142 1-153 40-209 (268)
305 TIGR01193 bacteriocin_ABC ABC- 99.8 5.1E-20 1.1E-24 156.7 0.3 136 1-147 493-650 (708)
306 PRK10522 multidrug transporter 99.8 8.9E-21 1.9E-25 157.1 -4.4 135 1-147 342-488 (547)
307 COG4559 ABC-type hemin transpo 99.8 4.3E-20 9.4E-25 133.3 -0.3 132 1-146 20-179 (259)
308 PRK11819 putative ABC transpor 99.8 1.2E-20 2.6E-25 156.6 -3.8 135 1-150 26-205 (556)
309 PRK14258 phosphate ABC transpo 99.8 1.5E-20 3.2E-25 142.7 -3.2 141 1-152 26-194 (261)
310 PRK14266 phosphate ABC transpo 99.8 3E-20 6.5E-25 140.0 -1.7 139 1-152 22-190 (250)
311 PRK14255 phosphate ABC transpo 99.8 1.3E-20 2.9E-25 142.1 -3.8 141 1-152 24-192 (252)
312 PRK10789 putative multidrug tr 99.8 2.9E-20 6.2E-25 154.8 -2.3 136 1-148 334-491 (569)
313 TIGR00955 3a01204 The Eye Pigm 99.8 3E-20 6.4E-25 155.9 -2.4 129 1-147 44-205 (617)
314 TIGR02204 MsbA_rel ABC transpo 99.8 2.1E-20 4.6E-25 155.7 -3.4 135 1-147 359-515 (576)
315 PRK13657 cyclic beta-1,2-gluca 99.8 1.3E-19 2.7E-24 151.4 1.2 136 1-148 354-511 (588)
316 PRK13409 putative ATPase RIL; 99.8 7.1E-21 1.5E-25 158.5 -6.3 132 4-149 95-253 (590)
317 TIGR03375 type_I_sec_LssB type 99.8 2.5E-20 5.3E-25 158.3 -3.3 136 1-148 484-641 (694)
318 PRK11147 ABC transporter ATPas 99.8 3.5E-20 7.5E-25 155.9 -2.6 136 1-152 22-200 (635)
319 PLN03073 ABC transporter F fam 99.8 9.2E-21 2E-25 160.6 -6.2 129 1-147 528-666 (718)
320 KOG0055|consensus 99.8 5.6E-20 1.2E-24 159.1 -1.7 135 1-147 372-528 (1228)
321 PRK14236 phosphate transporter 99.7 3.5E-20 7.7E-25 141.4 -2.8 139 1-150 44-210 (272)
322 TIGR01842 type_I_sec_PrtD type 99.7 3.3E-20 7.2E-25 153.7 -3.3 136 1-150 337-496 (544)
323 KOG0057|consensus 99.7 1.8E-20 4E-25 150.5 -4.6 137 1-148 371-527 (591)
324 PRK14246 phosphate ABC transpo 99.7 1.3E-20 2.8E-25 142.7 -5.5 140 1-152 29-197 (257)
325 PRK14257 phosphate ABC transpo 99.7 3.4E-21 7.3E-26 150.5 -9.0 141 1-152 101-269 (329)
326 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.7E-20 8E-25 141.8 -3.2 128 1-148 56-199 (282)
327 PRK14252 phosphate ABC transpo 99.7 2.9E-20 6.2E-25 141.3 -4.5 138 1-149 35-202 (265)
328 TIGR01846 type_I_sec_HlyB type 99.7 5.4E-20 1.2E-24 156.2 -3.4 136 1-148 476-633 (694)
329 PRK11147 ABC transporter ATPas 99.7 4.6E-20 1E-24 155.2 -4.1 132 1-149 338-481 (635)
330 TIGR01192 chvA glucan exporter 99.7 8E-20 1.7E-24 152.5 -2.9 137 1-149 354-512 (585)
331 COG4988 CydD ABC-type transpor 99.7 9.7E-20 2.1E-24 147.5 -2.4 136 1-147 340-495 (559)
332 COG1132 MdlB ABC-type multidru 99.7 9.7E-20 2.1E-24 151.5 -2.5 131 1-144 348-501 (567)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 6.9E-20 1.5E-24 152.0 -3.4 135 1-150 24-203 (552)
334 PRK10535 macrolide transporter 99.7 7.4E-20 1.6E-24 154.2 -3.4 138 1-152 27-188 (648)
335 TIGR01187 potA spermidine/putr 99.7 1.2E-20 2.6E-25 147.2 -7.9 127 13-153 1-145 (325)
336 COG4778 PhnL ABC-type phosphon 99.7 4.3E-19 9.3E-24 124.4 -0.3 131 1-144 30-188 (235)
337 COG4107 PhnK ABC-type phosphon 99.7 6.3E-19 1.4E-23 124.1 -0.1 132 1-146 25-189 (258)
338 KOG3595|consensus 99.7 2.3E-17 5E-22 148.1 9.7 157 5-163 124-282 (1395)
339 COG1101 PhnK ABC-type uncharac 99.7 6.5E-19 1.4E-23 127.5 -0.3 135 1-147 25-187 (263)
340 PTZ00265 multidrug resistance 99.7 3.3E-19 7.2E-24 160.4 -2.5 134 1-148 1187-1398(1466)
341 KOG0059|consensus 99.7 6.6E-19 1.4E-23 152.6 -2.5 139 1-153 584-743 (885)
342 COG1134 TagH ABC-type polysacc 99.7 8.3E-20 1.8E-24 134.3 -7.0 125 1-145 46-184 (249)
343 KOG0055|consensus 99.7 1.1E-18 2.3E-23 151.3 -1.4 132 1-145 1009-1163(1228)
344 COG4615 PvdE ABC-type sideroph 99.7 1.3E-19 2.8E-24 141.2 -6.6 150 1-163 342-503 (546)
345 COG4148 ModC ABC-type molybdat 99.7 7.7E-19 1.7E-23 131.5 -2.3 126 2-141 18-161 (352)
346 TIGR00956 3a01205 Pleiotropic 99.7 7.2E-19 1.6E-23 157.9 -3.1 133 1-147 782-941 (1394)
347 PLN03073 ABC transporter F fam 99.7 1.2E-18 2.6E-23 147.8 -1.7 135 1-148 196-384 (718)
348 TIGR00954 3a01203 Peroxysomal 99.7 4.8E-19 1E-23 149.5 -4.2 134 1-148 471-622 (659)
349 PLN03232 ABC transporter C fam 99.7 9.9E-19 2.1E-23 158.1 -2.9 137 1-148 1255-1411(1495)
350 PLN03130 ABC transporter C fam 99.7 1.2E-18 2.7E-23 158.0 -2.6 136 1-147 1258-1413(1622)
351 COG4618 ArpD ABC-type protease 99.7 2.7E-18 5.9E-23 137.1 -0.6 134 1-143 355-507 (580)
352 COG0488 Uup ATPase components 99.7 1.2E-18 2.7E-23 142.7 -3.2 136 1-151 22-196 (530)
353 PLN03140 ABC transporter G fam 99.7 1.2E-18 2.5E-23 156.7 -4.1 129 1-147 899-1058(1470)
354 PTZ00265 multidrug resistance 99.7 2.3E-18 5E-23 155.1 -2.3 47 1-47 404-453 (1466)
355 TIGR00957 MRP_assoc_pro multi 99.7 2.5E-18 5.4E-23 155.7 -2.4 136 1-147 1305-1460(1522)
356 KOG0061|consensus 99.7 3.1E-18 6.7E-23 143.2 -2.6 132 1-144 49-206 (613)
357 cd03270 ABC_UvrA_I The excisio 99.7 1.6E-18 3.5E-23 129.0 -3.9 60 79-151 119-182 (226)
358 cd03278 ABC_SMC_barmotin Barmo 99.7 7.9E-19 1.7E-23 128.1 -6.1 119 1-149 16-158 (197)
359 PTZ00243 ABC transporter; Prov 99.7 5.1E-18 1.1E-22 153.8 -2.8 137 1-148 1329-1486(1560)
360 TIGR01271 CFTR_protein cystic 99.6 6.7E-18 1.4E-22 152.7 -2.7 136 1-147 1238-1392(1490)
361 COG0488 Uup ATPase components 99.6 2.3E-18 5.1E-23 141.1 -5.2 130 1-148 341-479 (530)
362 PLN03140 ABC transporter G fam 99.6 5.8E-17 1.3E-21 145.9 3.1 136 1-147 184-375 (1470)
363 TIGR00956 3a01205 Pleiotropic 99.6 7.5E-18 1.6E-22 151.5 -2.7 136 1-147 80-248 (1394)
364 KOG0056|consensus 99.6 1.2E-16 2.7E-21 127.6 3.6 137 1-147 557-713 (790)
365 TIGR00957 MRP_assoc_pro multi 99.6 2.6E-17 5.7E-22 149.1 -3.9 131 1-149 657-801 (1522)
366 TIGR01271 CFTR_protein cystic 99.6 2.2E-17 4.8E-22 149.3 -4.5 133 1-148 445-588 (1490)
367 PTZ00243 ABC transporter; Prov 99.5 1E-16 2.2E-21 145.5 -4.8 131 1-147 679-821 (1560)
368 PLN03232 ABC transporter C fam 99.5 3.2E-16 6.9E-21 142.0 -3.4 129 1-147 636-779 (1495)
369 KOG0927|consensus 99.5 1E-15 2.2E-20 123.3 -1.2 131 1-145 409-546 (614)
370 PLN03130 ABC transporter C fam 99.5 6.4E-15 1.4E-19 134.2 2.3 129 1-147 636-779 (1622)
371 COG4138 BtuD ABC-type cobalami 99.5 3.9E-15 8.4E-20 105.1 0.6 128 1-142 18-166 (248)
372 COG4170 SapD ABC-type antimicr 99.5 9.7E-16 2.1E-20 111.2 -3.4 136 1-147 26-197 (330)
373 KOG0054|consensus 99.5 1.8E-14 4E-19 127.4 3.4 132 1-143 1159-1310(1381)
374 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.9E-14 4.1E-19 106.1 2.5 58 80-151 111-174 (212)
375 cd03240 ABC_Rad50 The catalyti 99.5 3.3E-14 7.1E-19 104.3 3.7 127 2-151 17-165 (204)
376 COG4178 ABC-type uncharacteriz 99.5 9.5E-16 2.1E-20 126.1 -5.1 136 1-153 412-560 (604)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.5 2.3E-14 5.1E-19 107.5 2.4 46 94-150 153-204 (243)
378 COG1245 Predicted ATPase, RNas 99.5 1.5E-14 3.3E-19 114.8 1.3 120 4-144 363-491 (591)
379 cd03279 ABC_sbcCD SbcCD and ot 99.4 2.5E-14 5.4E-19 105.5 1.8 44 94-148 118-173 (213)
380 KOG0065|consensus 99.4 1E-14 2.3E-19 127.3 -0.4 138 4-159 813-994 (1391)
381 COG5265 ATM1 ABC-type transpor 99.4 3.1E-15 6.6E-20 117.6 -3.4 135 1-147 282-438 (497)
382 cd03271 ABC_UvrA_II The excisi 99.4 1.1E-14 2.3E-19 110.4 -0.7 58 79-149 151-213 (261)
383 cd03280 ABC_MutS2 MutS2 homolo 99.4 1.6E-13 3.4E-18 100.3 3.0 105 1-147 20-129 (200)
384 KOG0062|consensus 99.4 2.9E-14 6.3E-19 114.4 -2.7 128 2-147 100-237 (582)
385 KOG0054|consensus 99.4 2.5E-14 5.4E-19 126.6 -3.6 129 1-147 540-682 (1381)
386 cd03273 ABC_SMC2_euk Eukaryoti 99.3 3.8E-15 8.2E-20 112.4 -8.1 45 94-149 161-211 (251)
387 COG1245 Predicted ATPase, RNas 99.3 1.2E-13 2.6E-18 109.8 -2.4 121 5-144 97-249 (591)
388 COG1129 MglA ABC-type sugar tr 99.3 2.4E-13 5.2E-18 110.1 -0.9 135 1-148 278-441 (500)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.3 1.7E-14 3.7E-19 105.3 -7.2 45 94-149 104-154 (198)
390 KOG0927|consensus 99.3 1.1E-13 2.5E-18 111.6 -4.0 33 2-34 95-127 (614)
391 cd03243 ABC_MutS_homologs The 99.2 5.8E-12 1.3E-16 92.2 3.9 30 2-31 23-52 (202)
392 cd03283 ABC_MutS-like MutS-lik 99.2 4.7E-12 1E-16 92.5 3.2 30 2-31 19-48 (199)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.2 7.8E-14 1.7E-18 105.1 -8.7 44 95-149 151-200 (247)
394 cd00820 PEPCK_HprK Phosphoenol 99.1 3.1E-11 6.8E-16 79.3 3.2 43 1-47 8-50 (107)
395 cd03282 ABC_MSH4_euk MutS4 hom 99.1 4.4E-11 9.4E-16 87.7 3.1 31 1-31 22-52 (204)
396 KOG0066|consensus 99.1 8.4E-12 1.8E-16 99.3 -0.8 127 2-143 607-739 (807)
397 PRK00349 uvrA excinuclease ABC 99.1 6.5E-12 1.4E-16 109.2 -2.4 46 94-150 825-875 (943)
398 KOG0060|consensus 99.1 8.4E-12 1.8E-16 101.6 -2.3 134 1-143 454-605 (659)
399 TIGR03238 dnd_assoc_3 dnd syst 99.1 1.4E-10 3E-15 93.7 4.0 46 1-48 25-73 (504)
400 PRK00635 excinuclease ABC subu 99.0 6.2E-11 1.3E-15 107.9 1.4 45 94-149 804-853 (1809)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.0 5.5E-11 1.2E-15 87.8 0.6 47 94-151 121-173 (213)
402 TIGR00630 uvra excinuclease AB 99.0 1.1E-11 2.4E-16 107.6 -4.1 46 94-150 823-873 (924)
403 COG2401 ABC-type ATPase fused 99.0 1.3E-11 2.9E-16 97.5 -4.1 125 1-143 402-542 (593)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.0 2.4E-10 5.1E-15 84.9 2.5 29 1-29 23-51 (222)
405 KOG2355|consensus 99.0 3.2E-11 6.9E-16 87.5 -2.3 43 1-43 33-77 (291)
406 cd03227 ABC_Class2 ABC-type Cl 99.0 2.6E-10 5.6E-15 80.7 1.9 37 106-148 79-121 (162)
407 cd03239 ABC_SMC_head The struc 98.9 5E-10 1.1E-14 80.5 2.9 39 105-149 95-139 (178)
408 cd03241 ABC_RecN RecN ATPase i 98.9 4.5E-11 9.6E-16 91.5 -2.8 38 105-148 171-214 (276)
409 KOG0064|consensus 98.9 2.2E-10 4.8E-15 92.8 1.0 33 1-33 501-533 (728)
410 PRK09862 putative ATP-dependen 98.9 1.5E-08 3.3E-13 83.2 9.3 122 1-134 203-348 (506)
411 smart00534 MUTSac ATPase domai 98.8 3.6E-09 7.7E-14 76.5 4.5 94 10-146 1-98 (185)
412 PF07728 AAA_5: AAA domain (dy 98.8 8.2E-09 1.8E-13 70.9 6.1 129 10-147 1-139 (139)
413 KOG0062|consensus 98.8 2.4E-10 5.2E-15 92.2 -1.9 128 2-144 384-518 (582)
414 COG5245 DYN1 Dynein, heavy cha 98.8 4.5E-09 9.8E-14 93.5 4.9 156 2-159 1488-1649(3164)
415 KOG0066|consensus 98.8 1.1E-09 2.3E-14 87.6 1.0 127 2-142 284-446 (807)
416 PTZ00132 GTP-binding nuclear p 98.8 8.3E-09 1.8E-13 76.0 5.6 27 119-148 166-197 (215)
417 cd01130 VirB11-like_ATPase Typ 98.8 3E-09 6.4E-14 76.9 2.7 33 2-34 19-51 (186)
418 KOG0065|consensus 98.8 1.5E-09 3.2E-14 95.7 0.5 133 1-144 134-296 (1391)
419 cd02023 UMPK Uridine monophosp 98.7 4.6E-09 1E-13 76.5 2.4 34 10-43 1-34 (198)
420 PF01078 Mg_chelatase: Magnesi 98.7 8.1E-08 1.8E-12 70.1 8.7 121 5-134 19-160 (206)
421 cd03281 ABC_MSH5_euk MutS5 hom 98.7 6.2E-09 1.3E-13 76.9 2.7 29 2-30 21-51 (213)
422 COG3845 ABC-type uncharacteriz 98.7 4.1E-09 9E-14 84.8 0.9 135 1-148 277-443 (501)
423 KOG0063|consensus 98.7 1.1E-09 2.4E-14 87.0 -2.4 119 6-145 365-493 (592)
424 TIGR01069 mutS2 MutS2 family p 98.7 3.3E-09 7.2E-14 91.2 0.1 30 2-31 315-345 (771)
425 TIGR00368 Mg chelatase-related 98.7 9E-08 1.9E-12 78.8 8.0 127 1-133 204-348 (499)
426 COG3910 Predicted ATPase [Gene 98.6 1.3E-08 2.9E-13 72.9 2.2 23 9-31 38-60 (233)
427 TIGR00235 udk uridine kinase. 98.6 2.4E-08 5.2E-13 73.3 3.4 32 6-37 4-35 (207)
428 PRK10078 ribose 1,5-bisphospho 98.6 4.9E-08 1.1E-12 70.5 4.6 38 8-46 2-39 (186)
429 cd03284 ABC_MutS1 MutS1 homolo 98.6 2.9E-08 6.2E-13 73.5 3.1 28 3-31 26-53 (216)
430 PF13555 AAA_29: P-loop contai 98.6 4.9E-08 1.1E-12 57.8 3.3 32 3-34 17-49 (62)
431 PRK09825 idnK D-gluconate kina 98.6 5E-08 1.1E-12 70.0 3.7 36 7-44 2-37 (176)
432 PRK00300 gmk guanylate kinase; 98.6 9.9E-08 2.2E-12 69.7 4.9 29 5-33 2-30 (205)
433 cd03287 ABC_MSH3_euk MutS3 hom 98.5 1.4E-07 2.9E-12 70.1 5.1 31 1-31 24-54 (222)
434 TIGR02858 spore_III_AA stage I 98.5 2.9E-07 6.2E-12 70.3 5.4 40 9-48 112-153 (270)
435 TIGR02322 phosphon_PhnN phosph 98.5 2.3E-07 5.1E-12 66.3 4.6 32 8-39 1-33 (179)
436 PHA02244 ATPase-like protein 98.4 1.7E-06 3.6E-11 68.5 9.1 136 5-158 116-264 (383)
437 PRK05480 uridine/cytidine kina 98.4 3.2E-07 6.9E-12 67.4 4.2 37 5-41 3-39 (209)
438 TIGR01650 PD_CobS cobaltochela 98.4 1.3E-06 2.7E-11 68.2 7.6 143 6-159 62-224 (327)
439 TIGR02788 VirB11 P-type DNA tr 98.4 2.4E-07 5.1E-12 72.1 3.0 32 3-34 139-170 (308)
440 TIGR02640 gas_vesic_GvpN gas v 98.4 1.9E-06 4.2E-11 65.5 8.0 147 5-159 18-189 (262)
441 PF00004 AAA: ATPase family as 98.4 1.6E-06 3.5E-11 58.3 6.6 123 11-149 1-126 (132)
442 TIGR03263 guanyl_kin guanylate 98.3 4.1E-07 8.8E-12 65.1 3.3 26 8-33 1-26 (180)
443 PRK09270 nucleoside triphospha 98.3 4.7E-07 1E-11 67.5 3.2 31 6-36 31-63 (229)
444 cd02025 PanK Pantothenate kina 98.3 5.6E-07 1.2E-11 66.8 3.4 24 10-33 1-24 (220)
445 cd00009 AAA The AAA+ (ATPases 98.3 8.4E-06 1.8E-10 55.2 9.0 26 7-32 18-43 (151)
446 PRK07196 fliI flagellum-specif 98.3 1E-06 2.2E-11 71.3 4.7 35 3-37 150-184 (434)
447 TIGR00554 panK_bact pantothena 98.3 6E-07 1.3E-11 69.1 3.3 37 7-43 61-101 (290)
448 TIGR03015 pepcterm_ATPase puta 98.3 1.4E-06 3E-11 66.1 4.9 36 5-40 39-75 (269)
449 PRK00409 recombination and DNA 98.3 5.5E-07 1.2E-11 77.9 3.0 101 3-145 321-426 (782)
450 PRK06002 fliI flagellum-specif 98.2 2.7E-06 5.9E-11 69.0 6.3 32 4-35 161-192 (450)
451 COG0194 Gmk Guanylate kinase [ 98.2 2.3E-06 5E-11 61.3 5.2 50 7-57 3-63 (191)
452 cd03286 ABC_MSH6_euk MutS6 hom 98.2 1.7E-06 3.6E-11 64.1 4.6 31 1-31 23-53 (218)
453 PRK08149 ATP synthase SpaL; Va 98.2 3E-06 6.5E-11 68.4 6.3 35 3-37 146-180 (428)
454 PLN02796 D-glycerate 3-kinase 98.2 9.4E-07 2E-11 69.3 3.3 39 6-44 93-141 (347)
455 PRK03846 adenylylsulfate kinas 98.2 9.2E-07 2E-11 64.5 2.9 39 6-44 22-63 (198)
456 smart00382 AAA ATPases associa 98.2 1.5E-06 3.2E-11 58.3 3.6 28 7-34 1-28 (148)
457 PF03193 DUF258: Protein of un 98.2 1.3E-06 2.9E-11 61.6 3.3 26 7-32 34-59 (161)
458 KOG0063|consensus 98.2 9.7E-08 2.1E-12 76.1 -2.8 123 6-142 98-247 (592)
459 PRK08972 fliI flagellum-specif 98.2 3.7E-06 8.1E-11 67.9 5.9 37 3-39 157-193 (444)
460 PRK10416 signal recognition pa 98.2 1.4E-06 2.9E-11 68.1 3.3 39 6-44 112-152 (318)
461 PRK13695 putative NTPase; Prov 98.2 1E-06 2.2E-11 62.9 2.4 24 10-33 2-25 (174)
462 cd01136 ATPase_flagellum-secre 98.2 4.7E-06 1E-10 65.1 5.8 37 3-39 64-100 (326)
463 PF13207 AAA_17: AAA domain; P 98.1 1.7E-06 3.7E-11 57.7 2.9 23 10-32 1-23 (121)
464 TIGR00763 lon ATP-dependent pr 98.1 2.3E-06 4.9E-11 74.3 4.2 144 7-159 346-496 (775)
465 PRK14737 gmk guanylate kinase; 98.1 5.4E-06 1.2E-10 60.0 5.6 27 6-32 2-28 (186)
466 TIGR00150 HI0065_YjeE ATPase, 98.1 2.5E-06 5.4E-11 58.4 3.4 29 5-33 19-47 (133)
467 PRK14721 flhF flagellar biosyn 98.1 2E-06 4.4E-11 69.3 3.4 27 5-31 188-214 (420)
468 PRK06995 flhF flagellar biosyn 98.1 2.1E-06 4.6E-11 70.3 3.6 30 3-32 251-280 (484)
469 cd00071 GMPK Guanosine monopho 98.1 2.7E-06 5.8E-11 58.6 3.4 25 10-34 1-25 (137)
470 PRK05541 adenylylsulfate kinas 98.1 2.5E-06 5.3E-11 60.9 3.2 37 5-41 4-43 (176)
471 PRK06793 fliI flagellum-specif 98.1 5.8E-06 1.2E-10 66.9 5.6 34 3-36 151-184 (432)
472 PRK07960 fliI flagellum-specif 98.1 4.5E-06 9.7E-11 67.7 5.0 38 3-40 170-207 (455)
473 cd02026 PRK Phosphoribulokinas 98.1 3.2E-06 7E-11 64.7 3.9 25 10-34 1-25 (273)
474 TIGR00101 ureG urease accessor 98.1 5.2E-06 1.1E-10 60.7 4.6 37 10-46 3-40 (199)
475 PRK07721 fliI flagellum-specif 98.1 3.4E-06 7.4E-11 68.5 3.7 39 3-41 153-193 (438)
476 TIGR03498 FliI_clade3 flagella 98.1 8.1E-06 1.8E-10 65.9 5.8 34 2-35 134-167 (418)
477 PRK14722 flhF flagellar biosyn 98.1 3.7E-06 8.1E-11 66.9 3.7 30 2-31 131-160 (374)
478 TIGR01026 fliI_yscN ATPase Fli 98.1 9.4E-06 2E-10 66.0 6.0 38 3-40 158-195 (440)
479 PRK01889 GTPase RsgA; Reviewed 98.0 3.6E-06 7.8E-11 66.8 3.4 38 4-41 191-230 (356)
480 TIGR03496 FliI_clade1 flagella 98.0 1.3E-05 2.9E-10 64.6 6.6 34 3-36 132-165 (411)
481 cd01131 PilT Pilus retraction 98.0 3.6E-06 7.8E-11 61.4 3.1 24 10-33 3-26 (198)
482 PF07724 AAA_2: AAA domain (Cd 98.0 1.1E-05 2.4E-10 57.6 5.5 115 9-131 4-128 (171)
483 PF13476 AAA_23: AAA domain; P 98.0 2.4E-06 5.3E-11 61.6 2.0 28 3-31 15-42 (202)
484 PRK13851 type IV secretion sys 98.0 5.1E-06 1.1E-10 65.5 3.9 32 4-35 158-189 (344)
485 cd01128 rho_factor Transcripti 98.0 5.1E-06 1.1E-10 62.8 3.8 31 4-34 12-42 (249)
486 PRK07261 topology modulation p 98.0 6.2E-06 1.3E-10 58.8 3.9 24 10-33 2-25 (171)
487 PRK09183 transposase/IS protei 98.0 4.8E-06 1E-10 63.3 3.4 27 5-31 99-125 (259)
488 PRK00098 GTPase RsgA; Reviewed 98.0 5.9E-06 1.3E-10 64.1 3.8 31 7-37 163-195 (298)
489 PTZ00454 26S protease regulato 98.0 1.1E-05 2.4E-10 64.9 5.4 30 5-34 176-205 (398)
490 cd04155 Arl3 Arl3 subfamily. 98.0 7.4E-06 1.6E-10 57.8 4.0 23 9-31 15-37 (173)
491 TIGR02524 dot_icm_DotB Dot/Icm 98.0 4.6E-06 9.9E-11 66.2 3.0 28 5-32 131-158 (358)
492 TIGR01313 therm_gnt_kin carboh 98.0 6.2E-06 1.3E-10 58.1 3.3 32 11-44 1-32 (163)
493 PRK14738 gmk guanylate kinase; 98.0 5.6E-06 1.2E-10 60.8 3.1 26 6-31 11-36 (206)
494 PRK10787 DNA-binding ATP-depen 98.0 2.7E-05 5.9E-10 67.6 7.7 145 6-159 347-497 (784)
495 PF04665 Pox_A32: Poxvirus A32 98.0 8.9E-05 1.9E-09 55.6 9.4 23 10-32 15-37 (241)
496 PF13671 AAA_33: AAA domain; P 98.0 5.5E-06 1.2E-10 56.8 2.8 24 10-33 1-24 (143)
497 PRK08118 topology modulation p 98.0 7.3E-06 1.6E-10 58.3 3.4 24 10-33 3-26 (167)
498 PRK08927 fliI flagellum-specif 98.0 2.8E-05 6E-10 63.1 7.0 38 3-40 153-190 (442)
499 cd02019 NK Nucleoside/nucleoti 98.0 8.4E-06 1.8E-10 49.4 3.1 23 10-32 1-23 (69)
500 PRK10751 molybdopterin-guanine 98.0 9.6E-06 2.1E-10 57.9 3.8 26 9-34 7-32 (173)
No 1
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=2e-34 Score=219.12 Aligned_cols=162 Identities=43% Similarity=0.819 Sum_probs=137.3
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEE
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFV 81 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (163)
++.++.|++++|+||+|||||++++..+..+++.+..+...+++..+++..++..++..++++.+.+|+|+.+++++.|+
T Consensus 27 ~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 27 DLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp HHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred HHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 34578899999999999999999999998887777667778899999999999999999998888999999999999999
Q ss_pred ecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCcccc-c
Q psy2657 82 DDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLRI-G 160 (163)
Q Consensus 82 ~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~~-~ 160 (163)
||+|+|..++|+++++.|+|||++++|+|||++++.+..+.|+++++++.|++|+.++++|+.|+|+++.++.|+++. .
T Consensus 107 DDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~ 186 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESLN 186 (272)
T ss_dssp ETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHHH
T ss_pred cccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876 5
Q ss_pred cCC
Q psy2657 161 SIY 163 (163)
Q Consensus 161 ~i~ 163 (163)
+||
T Consensus 187 ~If 189 (272)
T PF12775_consen 187 TIF 189 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.1e-30 Score=186.82 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=101.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc--CCCCCeeeeeeeecCCCCHHHH--------------------HHHHh
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS--LPPETYALTSVPFNFYTSSEML--------------------QKVLE 58 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~--~~~g~i~~~~~~~~~~~~~~~~--------------------~~~~~ 58 (163)
||+++++||+++|+||||||||||+|++.++ ++.|+|.++|.++......... .++..
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~l 100 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTL 100 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHh
Confidence 6899999999999999999999999999987 4459999999766443322111 11111
Q ss_pred ccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 59 KPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.+...+ ........+++..+++.+++.+.. +.+|.+| |||| +||++| |++.+|+++++|||||.
T Consensus 101 ap~~v~--~~~k~eA~~~A~~lL~~VGL~~ka---~~yP~qL-----SGGQ---qQRVAIARALaM~P~vmLFDEPTSA- 166 (240)
T COG1126 101 APVKVK--KLSKAEAREKALELLEKVGLADKA---DAYPAQL-----SGGQ---QQRVAIARALAMDPKVMLFDEPTSA- 166 (240)
T ss_pred hhHHHc--CCCHHHHHHHHHHHHHHcCchhhh---hhCcccc-----CcHH---HHHHHHHHHHcCCCCEEeecCCccc-
Confidence 111111 111122345677899999999887 8889999 9999 999999 99999999999999999
Q ss_pred ccCCchhhhcee
Q psy2657 137 FTIEPRLQRHFY 148 (163)
Q Consensus 137 ~~l~~~~~~~~~ 148 (163)
|||.+...+-
T Consensus 167 --LDPElv~EVL 176 (240)
T COG1126 167 --LDPELVGEVL 176 (240)
T ss_pred --CCHHHHHHHH
Confidence 9999887653
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-30 Score=192.14 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=110.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC-------------CCHHHHHHHHhccccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY-------------TSSEMLQKVLEKPLEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 65 (163)
+||+|.+||+|+|+||||||||||+|.+.|..+| |+|.++|.++... .++.....++.-.+....
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~ 101 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG 101 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccc
Confidence 6899999999999999999999999999999766 9999999876221 123333333332222211
Q ss_pred CceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
.-.....+++..+++.+|+.+.. +.+|+|| |||| |||+++ +++.+|+++++|||++. ||...
T Consensus 102 --~~~~e~~~~a~~~L~~VgL~~~~---~~~P~qL-----SGGM---rQRVaiARAL~~~P~lLLlDEPFgA---LDalT 165 (248)
T COG1116 102 --KSKAEARERAKELLELVGLAGFE---DKYPHQL-----SGGM---RQRVAIARALATRPKLLLLDEPFGA---LDALT 165 (248)
T ss_pred --cchHhHHHHHHHHHHHcCCcchh---hcCcccc-----ChHH---HHHHHHHHHHhcCCCEEEEcCCcch---hhHHH
Confidence 11112223566788999997766 8889999 9999 999999 99999999999999999 99999
Q ss_pred hhceeEEEEcCCcccc
Q psy2657 144 QRHFYVFALRLGLLRI 159 (163)
Q Consensus 144 ~~~~~~~~l~~~~~~~ 159 (163)
+.++...+++.+.+..
T Consensus 166 R~~lq~~l~~lw~~~~ 181 (248)
T COG1116 166 REELQDELLRLWEETR 181 (248)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9888877777776666
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=1.8e-28 Score=180.67 Aligned_cols=136 Identities=16% Similarity=0.223 Sum_probs=105.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHH---hc-----cccccCCcee-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVL---EK-----PLEKKAGRNF- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~- 69 (163)
+||+|++||+++++|||||||||++|+|.+++.| |+|.++|++++..+..+..+++- .+ ++....+...
T Consensus 20 v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~V 99 (309)
T COG1125 20 VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATV 99 (309)
T ss_pred eeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhh
Confidence 5899999999999999999999999999999766 99999999999988776655531 11 1111110000
Q ss_pred -------cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 70 -------GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 70 -------~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
.....+++.+.++.++++.. .|.+++|+|| |+|| +||+.+ |++.+|+++++|||++. ||
T Consensus 100 P~L~~w~k~~i~~r~~ELl~lvgL~p~-~~~~RyP~eL-----SGGQ---QQRVGv~RALAadP~ilLMDEPFgA---LD 167 (309)
T COG1125 100 PKLLGWDKERIKKRADELLDLVGLDPS-EYADRYPHEL-----SGGQ---QQRVGVARALAADPPILLMDEPFGA---LD 167 (309)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCCCHH-HHhhcCchhc-----Ccch---hhHHHHHHHHhcCCCeEeecCCccc---cC
Confidence 11123456678888888654 3668999999 9999 999998 99999999999999999 99
Q ss_pred chhhhcee
Q psy2657 141 PRLQRHFY 148 (163)
Q Consensus 141 ~~~~~~~~ 148 (163)
|..+..+.
T Consensus 168 pI~R~~lQ 175 (309)
T COG1125 168 PITRKQLQ 175 (309)
T ss_pred hhhHHHHH
Confidence 88776653
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=4.1e-28 Score=178.13 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=101.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHH---HHHhcccc---------ccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQ---KVLEKPLE---------KKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~ 66 (163)
+||+|++||+|+|+||||||||||++++.+...| |.+.++|.+++..+...... ..+...++ ....
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~EN 103 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLEN 103 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHH
Confidence 6899999999999999999999999999887555 99999999988776544321 11111000 0000
Q ss_pred c----ee-cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 R----NF-GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~----~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
- .+ +.. ..++...+++.+++.+.. .+++|.|| |+|| +||+++ |++.+|++|++||||+.
T Consensus 104 v~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~--~~~~p~eL-----SGGq---qQRVAIARAL~~~P~iilADEPTgn- 172 (226)
T COG1136 104 VELPLLIAGKSAGRRKRAAEELLEVLGLEDRL--LKKKPSEL-----SGGQ---QQRVAIARALINNPKIILADEPTGN- 172 (226)
T ss_pred HHhHHHHcCCChhHHHHHHHHHHHhcCChhhh--ccCCchhc-----CHHH---HHHHHHHHHHhcCCCeEEeeCcccc-
Confidence 0 00 011 122344566777887544 14789999 9999 999999 99999999999999999
Q ss_pred ccCCchhhhceeEEEEcCCc
Q psy2657 137 FTIEPRLQRHFYVFALRLGL 156 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~~~~ 156 (163)
||+.....+..+..+...
T Consensus 173 --LD~~t~~~V~~ll~~~~~ 190 (226)
T COG1136 173 --LDSKTAKEVLELLRELNK 190 (226)
T ss_pred --CChHHHHHHHHHHHHHHH
Confidence 998877666554444433
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=2.7e-27 Score=173.13 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=102.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHH--HHh---------ccccccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQK--VLE---------KPLEKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~ 67 (163)
+||+|.+||+++|+||||||||||+|.|.|+++| |+|.+.|.++..........- .+. ..+....+-
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNV 106 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV 106 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhh
Confidence 6899999999999999999999999999999877 999999999876654332211 110 011111111
Q ss_pred eec---------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 68 NFG---------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 68 ~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.|. ...++.+..-++.+|++... .+.+|.|| |+|| ++|+++ |++.||+++++||||+|
T Consensus 107 afplre~~~lp~~~i~~lv~~KL~~VGL~~~~--~~~~PsEL-----SGGM---~KRvaLARAialdPell~~DEPtsG- 175 (263)
T COG1127 107 AFPLREHTKLPESLIRELVLMKLELVGLRGAA--ADLYPSEL-----SGGM---RKRVALARAIALDPELLFLDEPTSG- 175 (263)
T ss_pred heehHhhccCCHHHHHHHHHHHHHhcCCChhh--hhhCchhh-----cchH---HHHHHHHHHHhcCCCEEEecCCCCC-
Confidence 110 00011122334566776552 27889999 9999 999999 99999999999999999
Q ss_pred ccCCchhhhceeEEEEcCCcc
Q psy2657 137 FTIEPRLQRHFYVFALRLGLL 157 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~~~~~ 157 (163)
|||.....|..++.+...+
T Consensus 176 --LDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 176 --LDPISAGVIDELIRELNDA 194 (263)
T ss_pred --CCcchHHHHHHHHHHHHHh
Confidence 9999988887666555433
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.7e-28 Score=188.54 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=101.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHHH-hccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKVL-EKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~ 72 (163)
+||.++.||+++|+||||||||||+|+|.|+.+| |+|.++|.+++..++.+. +|+.. ...|....+..|+..
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhh
Confidence 5899999999999999999999999999999655 999999999988665542 22111 111222222222221
Q ss_pred --------CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 73 --------GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 73 --------~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
..+++....+.+++.+.. +++|.+| |+|| +||+++ |++.+|+++++|||.++ ||.+
T Consensus 102 ~~~~~k~ei~~rV~eva~~L~l~~lL---~r~P~~L-----SGGQ---rQRVAlaRAlVr~P~v~L~DEPlSn---LDa~ 167 (338)
T COG3839 102 LRGVPKAEIDKRVKEVAKLLGLEHLL---NRKPLQL-----SGGQ---RQRVALARALVRKPKVFLLDEPLSN---LDAK 167 (338)
T ss_pred hCCCchHHHHHHHHHHHHHcCChhHH---hcCcccC-----Chhh---HHHHHHHHHHhcCCCEEEecCchhH---hhHH
Confidence 133455666777776655 8889999 9999 999999 99999999999999999 9988
Q ss_pred hhhcee
Q psy2657 143 LQRHFY 148 (163)
Q Consensus 143 ~~~~~~ 148 (163)
++..++
T Consensus 168 lR~~mr 173 (338)
T COG3839 168 LRVLMR 173 (338)
T ss_pred HHHHHH
Confidence 876553
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-27 Score=179.69 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=106.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CCCCeeeeeeeecCCCCHHHHHH--H---HhccccccC-Ccee---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PPETYALTSVPFNFYTSSEMLQK--V---LEKPLEKKA-GRNF--- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~g~i~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~-~~~~--- 69 (163)
+||+|++||+++|+|.||||||||+|++.++- ..|+|.++|.++...+.....+. . +...+.... +.++
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~Nv 104 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENV 104 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhh
Confidence 68999999999999999999999999998874 44999999999888765543322 1 111111110 1111
Q ss_pred ----------cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 70 ----------GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 70 ----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.....+++..+++.++++++. +.+|.+| |+|| |||++| |++.+|+++++|||||.
T Consensus 105 A~PLeiag~~k~ei~~RV~elLelVgL~dk~---~~yP~qL-----SGGQ---KQRVaIARALa~~P~iLL~DEaTSA-- 171 (339)
T COG1135 105 AFPLELAGVPKAEIKQRVAELLELVGLSDKA---DRYPAQL-----SGGQ---KQRVAIARALANNPKILLCDEATSA-- 171 (339)
T ss_pred hhhHhhcCCCHHHHHHHHHHHHHHcCChhhh---ccCchhc-----Ccch---hhHHHHHHHHhcCCCEEEecCcccc--
Confidence 111234567888999998777 8899999 9999 999999 99999999999999999
Q ss_pred cCCchhhhceeEEEEcC
Q psy2657 138 TIEPRLQRHFYVFALRL 154 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~~ 154 (163)
|||...+.+-.+..+.
T Consensus 172 -LDP~TT~sIL~LL~~I 187 (339)
T COG1135 172 -LDPETTQSILELLKDI 187 (339)
T ss_pred -CChHHHHHHHHHHHHH
Confidence 9999987765544443
No 9
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.4e-28 Score=178.21 Aligned_cols=135 Identities=21% Similarity=0.376 Sum_probs=101.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC---------------------CHHHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT---------------------SSEMLQKVL 57 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~---------------------~~~~~~~~~ 57 (163)
|||++.+||+++|+||||||||||+|+++|..+| |+|.++|.+..... +......++
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l 105 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL 105 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHH
Confidence 6899999999999999999999999999999766 99999997654432 122222233
Q ss_pred hccccccCCceecC-CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 58 EKPLEKKAGRNFGP-PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
..++.. .+. ...+++...++.++++. .|.+++|+|| |||| +||+++ |++.+|+++++|||++
T Consensus 106 ~Epl~~-----~~~~~~~~~i~~~L~~VgL~~--~~l~R~P~eL-----SGGQ---~QRiaIARAL~~~PklLIlDEptS 170 (252)
T COG1124 106 SEPLRP-----HGLSKSQQRIAELLDQVGLPP--SFLDRRPHEL-----SGGQ---RQRIAIARALIPEPKLLILDEPTS 170 (252)
T ss_pred hhhhcc-----CCccHHHHHHHHHHHHcCCCH--HHHhcCchhc-----ChhH---HHHHHHHHHhccCCCEEEecCchh
Confidence 222221 011 11233567888899874 3448889999 9999 999999 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
. ||...+..+..+..+
T Consensus 171 a---LD~siQa~IlnlL~~ 186 (252)
T COG1124 171 A---LDVSVQAQILNLLLE 186 (252)
T ss_pred h---hcHHHHHHHHHHHHH
Confidence 9 999888766544433
No 10
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=3.9e-28 Score=181.45 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=101.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--------ccc-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--------LEK------- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~------- 63 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|+++|.++.........+.+-.-+ +..
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~G 100 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG 100 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhc
Confidence 6899999999999999999999999999998776 99999999998887776666532111 100
Q ss_pred -c-CCceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 64 -K-AGRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 64 -~-~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
. +...++... .+.+...++.+++.... ++...+| |+|| ||++.+ +++++|+++++||||+.
T Consensus 101 R~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la---~r~~~~L-----SGGe---rQrv~iArALaQ~~~iLLLDEPTs~- 168 (258)
T COG1120 101 RYPHLGLFGRPSKEDEEIVEEALELLGLEHLA---DRPVDEL-----SGGE---RQRVLIARALAQETPILLLDEPTSH- 168 (258)
T ss_pred CCcccccccCCCHhHHHHHHHHHHHhCcHHHh---cCccccc-----ChhH---HHHHHHHHHHhcCCCEEEeCCCccc-
Confidence 0 112222111 11244556777776655 7788999 9999 999888 99999999999999999
Q ss_pred ccCCchhhhceeEE
Q psy2657 137 FTIEPRLQRHFYVF 150 (163)
Q Consensus 137 ~~l~~~~~~~~~~~ 150 (163)
||.+-+-.+..+
T Consensus 169 --LDi~~Q~evl~l 180 (258)
T COG1120 169 --LDIAHQIEVLEL 180 (258)
T ss_pred --cCHHHHHHHHHH
Confidence 998766554333
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=6e-28 Score=187.53 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=102.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc------cccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK------PLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 72 (163)
+||+|++||+++|+|||||||||++|+|.|...| |+|.++|++++..+..+.--.++.. ++....+-.|+..
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk 103 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK 103 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhh
Confidence 6899999999999999999999999999998655 9999999999887664432222111 1221111112211
Q ss_pred ---------CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 73 ---------GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 73 ---------~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
..+++..+++.+++.+.. +++|+|| |+|| +||+++ +++.+|+++++|||.+. ||.
T Consensus 104 ~~~~~~~~~i~~rv~e~L~lV~L~~~~---~R~p~qL-----SGGQ---qQRVALARAL~~~P~vLLLDEPlSa---LD~ 169 (352)
T COG3842 104 VRKKLKKAEIKARVEEALELVGLEGFA---DRKPHQL-----SGGQ---QQRVALARALVPEPKVLLLDEPLSA---LDA 169 (352)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCchhhh---hhChhhh-----ChHH---HHHHHHHHHhhcCcchhhhcCcccc---hhH
Confidence 123555677778886644 8999999 9999 999999 99999999999999999 998
Q ss_pred hhhhcee
Q psy2657 142 RLQRHFY 148 (163)
Q Consensus 142 ~~~~~~~ 148 (163)
.++.++.
T Consensus 170 kLR~~mr 176 (352)
T COG3842 170 KLREQMR 176 (352)
T ss_pred HHHHHHH
Confidence 8876654
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.1e-28 Score=176.50 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=109.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHH----------------------H
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQK----------------------V 56 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~----------------------~ 56 (163)
|||.|++||.|+|+||||||||||+|++.|..++ |++.++|.++.........+. .
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NV 102 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV 102 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHH
Confidence 6899999999999999999999999999998766 999999988877665433221 1
Q ss_pred HhccccccC--Cceec---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 57 LEKPLEKKA--GRNFG---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 57 ~~~~~~~~~--~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
+.+.+.... ...|+ ......+...++.+|+.+.. .++..+| |+|+ +||++| +++++|+++++
T Consensus 103 l~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A---~qra~~L-----SGGQ---QQRVaIARaL~Q~pkiILA 171 (258)
T COG3638 103 LLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA---YQRASTL-----SGGQ---QQRVAIARALVQQPKIILA 171 (258)
T ss_pred HhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH---HHHhccC-----Ccch---hHHHHHHHHHhcCCCEEec
Confidence 111111100 01122 22234566778888887665 6778888 9999 999999 99999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEcCCcccc
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
|||.+. |||...+....+..+...++.
T Consensus 172 DEPvas---LDp~~a~~Vm~~l~~in~~~g 198 (258)
T COG3638 172 DEPVAS---LDPESAKKVMDILKDINQEDG 198 (258)
T ss_pred CCcccc---cChhhHHHHHHHHHHHHHHcC
Confidence 999999 999999888777666655554
No 13
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-27 Score=178.20 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=101.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec---------CCCCHH--------HHHHHHhccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN---------FYTSSE--------MLQKVLEKPL 61 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~---------~~~~~~--------~~~~~~~~~~ 61 (163)
+||++++|++++|+||||||||||+|+++|.++| |+|.+.+.++. +.+... .+...+....
T Consensus 23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~ 102 (254)
T COG1121 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGR 102 (254)
T ss_pred cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccC
Confidence 6899999999999999999999999999998776 99998876432 222211 1111111111
Q ss_pred cccCCceecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 62 EKKAGRNFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 62 ~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.. ....++. ...+.+...++.++|.+.. ++++.+| |+|| +||+.+ |++.+|+++++|||+.|
T Consensus 103 ~~-~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~---~r~i~~L-----SGGQ---~QRV~lARAL~~~p~lllLDEP~~g- 169 (254)
T COG1121 103 YG-KKGWFRRLNKKDKEKVDEALERVGMEDLR---DRQIGEL-----SGGQ---KQRVLLARALAQNPDLLLLDEPFTG- 169 (254)
T ss_pred cc-cccccccccHHHHHHHHHHHHHcCchhhh---CCccccc-----CcHH---HHHHHHHHHhccCCCEEEecCCccc-
Confidence 11 1122222 2234566788999998666 8899999 9999 999888 99999999999999999
Q ss_pred ccCCchhhhceeEEEEcC
Q psy2657 137 FTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~~ 154 (163)
+|+.....|..+.-+.
T Consensus 170 --vD~~~~~~i~~lL~~l 185 (254)
T COG1121 170 --VDVAGQKEIYDLLKEL 185 (254)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 9999887775554443
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.7e-27 Score=182.02 Aligned_cols=142 Identities=16% Similarity=0.241 Sum_probs=106.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccc-----c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEK-----K 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~ 64 (163)
+||++++|++++|+||||||||||+|+++|.+.| |+|.++|.+.... ....+..+... +.. .
T Consensus 24 vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~~~~igy~~~~~~~~~~lT~~e~l~~ 101 (293)
T COG1131 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKVRRRIGYVPQEPSLYPELTVRENLEF 101 (293)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHHHhheEEEccCCCCCccccHHHHHHH
Confidence 6899999999999999999999999999999766 9999999887654 12222211110 000 0
Q ss_pred CCceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 65 AGRNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 65 ~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
....++.. ..+++..+++.++++... ++++..+ |+|| |||+++ +++.+|+++++||||+| |
T Consensus 102 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~l-----S~G~---kqrl~ia~aL~~~P~lliLDEPt~G---L 167 (293)
T COG1131 102 FARLYGLSKEEAEERIEELLELFGLEDKA---NKKVRTL-----SGGM---KQRLSIALALLHDPELLILDEPTSG---L 167 (293)
T ss_pred HHHHhCCChhHHHHHHHHHHHHcCCchhh---Ccchhhc-----CHHH---HHHHHHHHHHhcCCCEEEECCCCcC---C
Confidence 01222222 123566788899998733 6778999 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEcCCccc
Q psy2657 140 EPRLQRHFYVFALRLGLLR 158 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~ 158 (163)
||..++.|..++.+...+.
T Consensus 168 Dp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 168 DPESRREIWELLRELAKEG 186 (293)
T ss_pred CHHHHHHHHHHHHHHHhCC
Confidence 9999998877766654443
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.7e-26 Score=163.63 Aligned_cols=137 Identities=17% Similarity=0.295 Sum_probs=102.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HHHHHhccccc----cCCcee---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQKVLEKPLEK----KAGRNF--- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~--- 69 (163)
+||++++||.+-|+||||||||||+|.|++...| |+++++|.+++....... ++..+.-.++. ....+|
T Consensus 21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNV 100 (223)
T COG2884 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV 100 (223)
T ss_pred ceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhh
Confidence 6899999999999999999999999999998655 999999999876654321 11111110000 000111
Q ss_pred -------c---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 70 -------G---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 70 -------~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
+ ....+++...+|.+++.++. ...|.+| |+|+ +||++| |++.+|+++++||||++
T Consensus 101 A~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~---~~lP~~L-----SGGE---QQRvaIARAiV~~P~vLlADEPTGN-- 167 (223)
T COG2884 101 ALPLRVIGKPPREIRRRVSEVLDLVGLKHKA---RALPSQL-----SGGE---QQRVAIARAIVNQPAVLLADEPTGN-- 167 (223)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHhccchhh---hcCcccc-----CchH---HHHHHHHHHHccCCCeEeecCCCCC--
Confidence 1 11234566788999998776 7789999 9999 999999 99999999999999999
Q ss_pred cCCchhhhceeEEE
Q psy2657 138 TIEPRLQRHFYVFA 151 (163)
Q Consensus 138 ~l~~~~~~~~~~~~ 151 (163)
|||...+.+..+.
T Consensus 168 -LDp~~s~~im~lf 180 (223)
T COG2884 168 -LDPDLSWEIMRLF 180 (223)
T ss_pred -CChHHHHHHHHHH
Confidence 9998876654443
No 16
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.4e-26 Score=170.19 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=102.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCC-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPG----- 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 73 (163)
+|+.+++|+.++|+|+||||||||++++.|.+.| |+|.++|.+++.......+...+...+.......+.+..
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~eva 102 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVA 102 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHh
Confidence 5889999999999999999999999999999766 899999988764222222222111111111111111111
Q ss_pred -------------CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 74 -------------NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 74 -------------~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+++...++.+++.+.. ++.|++| |+|| +||+++ +++.+|+++++||||+|
T Consensus 103 fg~~n~g~~~~e~~~rv~~~l~~vgl~~~~---~r~p~~L-----SGGq---kqRvaIA~vLa~~P~iliLDEPta~--- 168 (235)
T COG1122 103 FGLENLGLPREEIEERVAEALELVGLEELL---DRPPFNL-----SGGQ---KQRVAIAGVLAMGPEILLLDEPTAG--- 168 (235)
T ss_pred hchhhcCCCHHHHHHHHHHHHHHcCchhhc---cCCcccc-----CCcc---eeeHHhhHHHHcCCCEEEEcCCCCC---
Confidence 12344555666665554 7889999 9999 999999 89999999999999999
Q ss_pred CCchhhhceeEEEEcCCcc
Q psy2657 139 IEPRLQRHFYVFALRLGLL 157 (163)
Q Consensus 139 l~~~~~~~~~~~~l~~~~~ 157 (163)
|||..++.+..+..+...+
T Consensus 169 LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 169 LDPKGRRELLELLKKLKEE 187 (235)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999998876666555444
No 17
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.1e-27 Score=178.43 Aligned_cols=142 Identities=18% Similarity=0.325 Sum_probs=103.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-C------CCeeeeeeeecCCCCHHHHH---H----HHhcccccc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-P------ETYALTSVPFNFYTSSEMLQ---K----VLEKPLEKK-- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-~------g~i~~~~~~~~~~~~~~~~~---~----~~~~~~~~~-- 64 (163)
+||++++||+++|+|+|||||||+.++|++.++ + |++.++|.++...+.....+ + +++.++...
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnP 103 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNP 103 (316)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCC
Confidence 689999999999999999999999999999986 3 67888888765554432100 0 111111110
Q ss_pred --------------CCce-ecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEE
Q psy2657 65 --------------AGRN-FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFV 127 (163)
Q Consensus 65 --------------~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i 127 (163)
+... ......+++...++.+++++.+...+.+|+|| |||| +||+.+ +++.+|+++
T Consensus 104 v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhel-----SGGM---rQRV~IAmala~~P~Ll 175 (316)
T COG0444 104 VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHEL-----SGGM---RQRVMIAMALALNPKLL 175 (316)
T ss_pred hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCccc-----CCcH---HHHHHHHHHHhCCCCEE
Confidence 0000 00111335778899999998876668899999 9999 999987 999999999
Q ss_pred EEecCCCCcccCCchhhhceeEEEEc
Q psy2657 128 SAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 128 ~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
++||||++ ||...++++-.+..+
T Consensus 176 IADEPTTA---LDvt~QaqIl~Ll~~ 198 (316)
T COG0444 176 IADEPTTA---LDVTVQAQILDLLKE 198 (316)
T ss_pred EeCCCcch---hhHHHHHHHHHHHHH
Confidence 99999999 998887766544433
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-26 Score=165.69 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=100.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc---------ccccc-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK---------PLEKK----- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----- 64 (163)
+||.++.||+++|.|||||||||++|.|.+.+.| |+++++|.+....+..-. +. +.- .+...
T Consensus 21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr-r~-IGVl~~e~glY~RlT~rEnl~~ 98 (245)
T COG4555 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR-RK-IGVLFGERGLYARLTARENLKY 98 (245)
T ss_pred eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh-hh-cceecCCcChhhhhhHHHHHHH
Confidence 5899999999999999999999999999998755 999999988765542211 11 110 00000
Q ss_pred CCceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 65 AGRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 65 ~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
.+..++... ..+...+.+.++|.+ +.++.+.++ |.|+ ||++++ |++++|+++++|||++| |
T Consensus 99 Fa~L~~l~~~~~kari~~l~k~l~l~~---~~~rRv~~~-----S~G~---kqkV~iARAlvh~P~i~vlDEP~sG---L 164 (245)
T COG4555 99 FARLNGLSRKEIKARIAELSKRLQLLE---YLDRRVGEF-----STGM---KQKVAIARALVHDPSILVLDEPTSG---L 164 (245)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhChHH---HHHHHHhhh-----chhh---HHHHHHHHHHhcCCCeEEEcCCCCC---c
Confidence 011111111 122333344444432 336777788 9999 999999 99999999999999999 9
Q ss_pred CchhhhceeEEEEcCCcccccc
Q psy2657 140 EPRLQRHFYVFALRLGLLRIGS 161 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~~~ 161 (163)
|-+.++.|+.+......+....
T Consensus 165 Di~~~r~~~dfi~q~k~egr~v 186 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAV 186 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEE
Confidence 9999988877665554433333
No 19
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-26 Score=164.35 Aligned_cols=144 Identities=12% Similarity=0.080 Sum_probs=110.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC-------------CHHHHHHHHhccccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT-------------SSEMLQKVLEKPLEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 65 (163)
+|+.++.||.|+++||||||||||+|.+.|..+| |++.+++..++... ++.....++...+...
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~- 102 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLR- 102 (259)
T ss_pred cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhc-
Confidence 6899999999999999999999999999999776 99999998775432 2333333333222221
Q ss_pred CceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
.+-.....+.+..++..+++.+-+ ++++-|| |+|| |||+.+ +++.+|+++++|||++. +|.-.
T Consensus 103 -Gi~k~~R~~~a~q~l~~VgL~~~~---~~~i~qL-----SGGm---rQRvGiARALa~eP~~LlLDEPfgA---lDa~t 167 (259)
T COG4525 103 -GIEKAQRREIAHQMLALVGLEGAE---HKYIWQL-----SGGM---RQRVGIARALAVEPQLLLLDEPFGA---LDALT 167 (259)
T ss_pred -CCCHHHHHHHHHHHHHHhCccccc---ccceEee-----cchH---HHHHHHHHHhhcCcceEeecCchhh---HHHHH
Confidence 111111223355677778887666 8889999 9999 999998 99999999999999999 99999
Q ss_pred hhceeEEEEcCCccccc
Q psy2657 144 QRHFYVFALRLGLLRIG 160 (163)
Q Consensus 144 ~~~~~~~~l~~~~~~~~ 160 (163)
++++..+.++.+.++.+
T Consensus 168 Re~mQelLldlw~~tgk 184 (259)
T COG4525 168 REQMQELLLDLWQETGK 184 (259)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99998888888777663
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.7e-26 Score=172.98 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=98.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee---eecCCCCHHH-----HHHH-HhccccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV---PFNFYTSSEM-----LQKV-LEKPLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~---~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~ 69 (163)
|++.|+.||.++|.||||||||||+|+|.|+..| |.|.++|. +.+....... +|.. +...|....+..|
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAF 100 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF 100 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhh
Confidence 6899999999999999999999999999999765 99999998 4333221110 0100 0111221111222
Q ss_pred cC----------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 70 GP----------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 70 ~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
+. ....++.+.++.+++.... +++|.+| |+|| |||+++ +++.+|+++++|||++.
T Consensus 101 Gl~~~~~~p~~~~~r~rv~elL~lvqL~~la---~ryP~QL-----SGGQ---rQRVALARALA~eP~vLLLDEPf~A-- 167 (345)
T COG1118 101 GLKVRKERPSEAEIRARVEELLRLVQLEGLA---DRYPAQL-----SGGQ---RQRVALARALAVEPKVLLLDEPFGA-- 167 (345)
T ss_pred cccccccCCChhhHHHHHHHHHHHhcccchh---hcCchhc-----ChHH---HHHHHHHHHhhcCCCeEeecCCchh--
Confidence 22 1122444567777777666 8899999 9999 999999 99999999999999999
Q ss_pred cCCchhhhceeEEE
Q psy2657 138 TIEPRLQRHFYVFA 151 (163)
Q Consensus 138 ~l~~~~~~~~~~~~ 151 (163)
||...+..+....
T Consensus 168 -LDa~vr~~lr~wL 180 (345)
T COG1118 168 -LDAKVRKELRRWL 180 (345)
T ss_pred -hhHHHHHHHHHHH
Confidence 9988877665443
No 21
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.7e-26 Score=172.23 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=95.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
|||++++||+++|+|+|||||||+.|+++++.+| |+|+++|.++.... .....+++.
T Consensus 32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~---------------------~~~~~~~v~ 90 (268)
T COG4608 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS---------------------KEERRERVL 90 (268)
T ss_pred eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---------------------hhHHHHHHH
Confidence 6899999999999999999999999999999876 99999998865554 011123355
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
..++.++++... ..++|+|+ |+|| +||++| |++.+|+++++|||++. ||...+.+.-.+..
T Consensus 91 elL~~Vgl~~~~--~~ryPhel-----SGGQ---rQRi~IARALal~P~liV~DEpvSa---LDvSiqaqIlnLL~ 153 (268)
T COG4608 91 ELLEKVGLPEEF--LYRYPHEL-----SGGQ---RQRIGIARALALNPKLIVADEPVSA---LDVSVQAQILNLLK 153 (268)
T ss_pred HHHHHhCCCHHH--hhcCCccc-----Cchh---hhhHHHHHHHhhCCcEEEecCchhh---cchhHHHHHHHHHH
Confidence 567777754432 37789999 9999 999999 99999999999999999 99877666544333
No 22
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=4e-26 Score=184.59 Aligned_cols=141 Identities=18% Similarity=0.315 Sum_probs=101.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC----------------------CHHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT----------------------SSEMLQKV 56 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~----------------------~~~~~~~~ 56 (163)
|||.+.+||+++|+|+||||||||+|+++|..+| |.+.++|.+..... +...+...
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 6899999999999999999999999999999766 88999987622111 11111112
Q ss_pred HhccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 57 LEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
+..++....... .....+++...++.++++.. +.+++|+|+ |+|| |||+++ +++.+|+++++|||++
T Consensus 390 i~epL~~~~~~~-~~~~~~rv~~ll~~VgL~~~--~l~ryP~el-----SGGQ---rQRvaIARALa~~P~lli~DEp~S 458 (539)
T COG1123 390 LAEPLRIHGGGS-GAERRARVAELLELVGLPPE--FLDRYPHEL-----SGGQ---RQRVAIARALALEPKLLILDEPVS 458 (539)
T ss_pred HHhHHhhhcccc-hHHHHHHHHHHHHHcCCCHH--HHhcCchhc-----Ccch---hHHHHHHHHHhcCCCEEEecCCcc
Confidence 222221111000 11122345567888888843 458899999 9999 999999 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEcCC
Q psy2657 135 GSFTIEPRLQRHFYVFALRLG 155 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~~~ 155 (163)
. ||+..++++..+..+..
T Consensus 459 a---LDvsvqa~VlnLl~~lq 476 (539)
T COG1123 459 A---LDVSVQAQVLNLLKDLQ 476 (539)
T ss_pred c---cCHHHHHHHHHHHHHHH
Confidence 9 99999888765555543
No 23
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.89 E-value=1.7e-25 Score=175.20 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=99.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HHHHHhccc---cccC-Cce----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQKVLEKPL---EKKA-GRN---- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~-~~~---- 68 (163)
+||++++||+++|+||||||||||+|+|+|..+| |+|.++|.++........ ....+.... .... ..+
T Consensus 24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni 103 (343)
T TIGR02314 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNV 103 (343)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHH
Confidence 5899999999999999999999999999999766 999999998865543221 111111000 0000 000
Q ss_pred -e-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 69 -F-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 69 -~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
+ +.. ..+++..+++.+++.+.. ++++.+| |+|| +||+++ +++.+|+++++||||++
T Consensus 104 ~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~---~~~~~~L-----SgGq---kQRV~IARAL~~~P~iLLlDEPts~-- 170 (343)
T TIGR02314 104 ALPLELDNTPKDEIKRKVTELLALVGLGDKH---DSYPSNL-----SGGQ---KQRVAIARALASNPKVLLCDEATSA-- 170 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhh---hCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCccc--
Confidence 0 000 112344677888886654 7889999 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++.+
T Consensus 171 -LD~~t~~~i~~lL~~ 185 (343)
T TIGR02314 171 -LDPATTQSILELLKE 185 (343)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999888766544443
No 24
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=5e-26 Score=160.42 Aligned_cols=140 Identities=17% Similarity=0.268 Sum_probs=102.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHH-HHHHhc-----cccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEML-QKVLEK-----PLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~-- 70 (163)
+++.+..||+|+|+||||||||||++.|.|...| |+++++|++.+...++..- .+.+.+ .+....+.-+|
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC
Confidence 4678999999999999999999999999998655 9999999998876655422 222221 11111110011
Q ss_pred ------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 71 ------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 71 ------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
....+++...+..+|+.... ++.|.+| |+|+ |||+++ .++++-.++++|||++. |||.
T Consensus 98 P~LkL~a~~r~~v~~aa~~vGl~~~~---~RLP~~L-----SGGq---RQRvALARclvR~~PilLLDEPFsA---LdP~ 163 (231)
T COG3840 98 PGLKLNAEQREKVEAAAAQVGLAGFL---KRLPGEL-----SGGQ---RQRVALARCLVREQPILLLDEPFSA---LDPA 163 (231)
T ss_pred cccccCHHHHHHHHHHHHHhChhhHh---hhCcccc-----CchH---HHHHHHHHHHhccCCeEEecCchhh---cCHH
Confidence 11123444566677776555 8889999 9999 999999 89999999999999999 9999
Q ss_pred hhhceeEEEEcC
Q psy2657 143 LQRHFYVFALRL 154 (163)
Q Consensus 143 ~~~~~~~~~l~~ 154 (163)
++..+..++.+.
T Consensus 164 LR~eMl~Lv~~l 175 (231)
T COG3840 164 LRAEMLALVSQL 175 (231)
T ss_pred HHHHHHHHHHHH
Confidence 987765544443
No 25
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.9e-25 Score=161.75 Aligned_cols=138 Identities=14% Similarity=0.256 Sum_probs=95.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecC-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGP------- 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 71 (163)
+||.+++||+++|+|+||+|||||+|+|+|.+++ |+|.++|.+++..++....+.-+....+.+ .+|..
T Consensus 22 vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR--~iF~~LTVeENL 99 (237)
T COG0410 22 VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR--RIFPRLTVEENL 99 (237)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc--cchhhCcHHHHH
Confidence 6899999999999999999999999999999876 999999999999988777665333222111 11110
Q ss_pred ----CCCc--eEE-EEEecC-CC-CCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 72 ----PGNK--TMI-YFVDDM-NM-PEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 72 ----~~~~--~~~-~~l~~~-~l-~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
...+ ... ..+|.+ .+ |......+++...| |+|+ +|.+++ |++.+|+++++|||+.| |.
T Consensus 100 ~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~L-----SGGE---QQMLAiaRALm~~PklLLLDEPs~G---La 168 (237)
T COG0410 100 LLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTL-----SGGE---QQMLAIARALMSRPKLLLLDEPSEG---LA 168 (237)
T ss_pred hhhhhcccccccccccHHHHHHHChhHHHHhcCcccCC-----ChHH---HHHHHHHHHHhcCCCEEEecCCccC---cC
Confidence 0000 000 001111 11 22222225556666 9999 999999 99999999999999999 99
Q ss_pred chhhhceeEEE
Q psy2657 141 PRLQRHFYVFA 151 (163)
Q Consensus 141 ~~~~~~~~~~~ 151 (163)
|.....+...+
T Consensus 169 P~iv~~I~~~i 179 (237)
T COG0410 169 PKIVEEIFEAI 179 (237)
T ss_pred HHHHHHHHHHH
Confidence 98876554333
No 26
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.88 E-value=3.2e-24 Score=154.41 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=90.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||.+++||+++|+||||||||||+++++|.++| |+|.++|.++....... ....+. .++.
T Consensus 18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~-~~~~i~--------~~~q-------- 80 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE-LARKIA--------YVPQ-------- 80 (180)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHH-HHHHHh--------HHHH--------
Confidence 5789999999999999999999999999999765 99999998876443222 111111 1111
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+++.+++.+.. ++.+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..+..+..+.
T Consensus 81 -~l~~~gl~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~llllDEP~~~---LD~~~~~~~~~~l 140 (180)
T cd03214 81 -ALELLGLAHLA---DRPFNEL-----SGGE---RQRVLLARALAQEPPILLLDEPTSH---LDIAHQIELLELL 140 (180)
T ss_pred -HHHHcCCHhHh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC---CCHHHHHHHHHHH
Confidence 55566665332 5567788 9999 999998 89999999999999999 9987776664433
No 27
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.88 E-value=1.1e-24 Score=160.79 Aligned_cols=139 Identities=19% Similarity=0.357 Sum_probs=95.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccccc---------cCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPLEK---------KAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~ 67 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++....... .....+...... ....
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 101 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNV 101 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHH
Confidence 5899999999999999999999999999999765 99999998775432211 111111100000 0000
Q ss_pred ee-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 NF-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 ~~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.+ +.. ..+++..+++.+++.... ++.+.+| |+|| +||+++ +++.+|+++++|||+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~laral~~~p~llllDEPt~~-- 168 (216)
T TIGR00960 102 AFPLRIIGVPPRDANERVSAALEKVGLEGKA---HALPMQL-----SGGE---QQRVAIARAIVHKPPLLLADEPTGN-- 168 (216)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCc--
Confidence 00 000 112234456677775433 6778888 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..+...
T Consensus 169 -LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 169 -LDPELSRDIMRLFEE 183 (216)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999887776554433
No 28
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.6e-25 Score=164.31 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=99.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc----ccc--------CC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL----EKK--------AG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~ 66 (163)
+||.+++|++++++|||||||||++|+|+|.++| |+|.++|.+++.......-.-.-+..+ ... -+
T Consensus 21 isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk 100 (300)
T COG4152 21 ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK 100 (300)
T ss_pred eeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhc
Confidence 5899999999999999999999999999999876 999999988754322111100000000 000 00
Q ss_pred ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 67 RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
.+-.....+++..+++.+++.... ..++.+| |.|. +|++.+ +++++|+++++|||++| |||--.
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~---~~kIk~L-----SKGn---qQKIQfisaviHePeLlILDEPFSG---LDPVN~ 166 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKK---TKKIKEL-----SKGN---QQKIQFISAVIHEPELLILDEPFSG---LDPVNV 166 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccc---cchHHHh-----hhhh---hHHHHHHHHHhcCCCEEEecCCccC---CChhhH
Confidence 111111223455667777776655 7789999 9999 999998 99999999999999999 998877
Q ss_pred hceeEEEEcC
Q psy2657 145 RHFYVFALRL 154 (163)
Q Consensus 145 ~~~~~~~l~~ 154 (163)
..+...+.+.
T Consensus 167 elLk~~I~~l 176 (300)
T COG4152 167 ELLKDAIFEL 176 (300)
T ss_pred HHHHHHHHHH
Confidence 7666555554
No 29
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=5.9e-26 Score=178.83 Aligned_cols=140 Identities=15% Similarity=0.179 Sum_probs=101.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHH---HHHHhccc---------cccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEML---QKVLEKPL---------EKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~ 66 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++......... +..+.... .....
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eN 91 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQN 91 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHH
Confidence 5899999999999999999999999999999876 9999999998765443321 11111000 00000
Q ss_pred ceec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 RNFG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~~~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..++ .. ..+++..+++.+++... .++++.+| |+|| +||+++ +++.+|+++++|||+++
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~---~~~~p~~L-----SGGq---~QRV~lARAL~~~p~iLLlDEP~sa- 159 (363)
T TIGR01186 92 TSLGPELLGWPEQERKEKALELLKLVGLEEY---EHRYPDEL-----SGGM---QQRVGLARALAAEPDILLMDEAFSA- 159 (363)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCchh---hhCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc-
Confidence 0011 00 11234566777788543 38889999 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEEcC
Q psy2657 137 FTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~~ 154 (163)
||+..++.+..+....
T Consensus 160 --LD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 160 --LDPLIRDSMQDELKKL 175 (363)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 9999887776555543
No 30
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.9e-26 Score=169.15 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=105.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------cccc-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKK----- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----- 64 (163)
+||++++||+++|+|||||||||++|++.|.++| |+|.++|.+++..++....+.-+... +...
T Consensus 23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~v 102 (250)
T COG0411 23 VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAV 102 (250)
T ss_pred eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHH
Confidence 6899999999999999999999999999999877 99999999998877665443311110 0000
Q ss_pred -------CCceecC--------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEE
Q psy2657 65 -------AGRNFGP--------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFV 127 (163)
Q Consensus 65 -------~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i 127 (163)
....++. ...+++...++.+++.+.. +.+..+| |+|+ ++++++ +++.+|+++
T Consensus 103 a~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a---~~~A~~L-----syG~---qR~LEIArALa~~P~lL 171 (250)
T COG0411 103 GAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA---DRPAGNL-----SYGQ---QRRLEIARALATQPKLL 171 (250)
T ss_pred HhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh---cchhhcC-----ChhH---hHHHHHHHHHhcCCCEE
Confidence 0011111 1123455677888887766 7888899 9999 998988 999999999
Q ss_pred EEecCCCCcccCCchhhhceeEEEEcCCc
Q psy2657 128 SAMNPTSGSFTIEPRLQRHFYVFALRLGL 156 (163)
Q Consensus 128 ~~deP~~g~~~l~~~~~~~~~~~~l~~~~ 156 (163)
++|||.+| +++.....+..++.+.+.
T Consensus 172 LLDEPaAG---ln~~e~~~l~~~i~~i~~ 197 (250)
T COG0411 172 LLDEPAAG---LNPEETEELAELIRELRD 197 (250)
T ss_pred EecCccCC---CCHHHHHHHHHHHHHHHh
Confidence 99999999 888777665554444433
No 31
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.88 E-value=2.2e-24 Score=159.39 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=96.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH---HHHHHhcc---------ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM---LQKVLEKP---------LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~ 66 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++........ ....+... +.....
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN 102 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHH
Confidence 5899999999999999999999999999999765 999999988754332111 11111100 000000
Q ss_pred -----ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 -----RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 -----~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
...+.. ..+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~lllLDEP~~~- 170 (218)
T cd03255 103 VELPLLLAGVPKKERRERAEELLERVGLGDRL---NHYPSEL-----SGGQ---QQRVAIARALANDPKIILADEPTGN- 170 (218)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh---hcChhhc-----CHHH---HHHHHHHHHHccCCCEEEEcCCccc-
Confidence 000000 011233456666765432 6678888 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEEcC
Q psy2657 137 FTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~~ 154 (163)
||+..+..+..++.+.
T Consensus 171 --LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 171 --LDSETGKEVMELLREL 186 (218)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 9999887776555443
No 32
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.88 E-value=1.3e-24 Score=168.08 Aligned_cols=138 Identities=19% Similarity=0.290 Sum_probs=97.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---- 65 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++... .......+...... ..
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 89 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE--PRKVRRSIGIVPQYASVDEDLTGRENLEM 89 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--HHHHHhhcEEecCCCCCCCCCcHHHHHHH
Confidence 5899999999999999999999999999999765 9999999877532 11111111110000 00
Q ss_pred -CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 -GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 -~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...++... .+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||+| |
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~al~~~p~lllLDEPt~g---L 155 (302)
T TIGR01188 90 MGRLYGLPKDEAEERAEELLELFELGEAA---DRPVGTY-----SGGM---RRRLDIAASLIHQPDVLFLDEPTTG---L 155 (302)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHh---CCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcC---C
Confidence 00011100 11244566777775433 6778888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEcC
Q psy2657 140 EPRLQRHFYVFALRL 154 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~ 154 (163)
|+..++.+..++...
T Consensus 156 D~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 156 DPRTRRAIWDYIRAL 170 (302)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999887776654443
No 33
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=1.7e-25 Score=166.83 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=93.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHH-------HHhccccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQK-------VLEKPLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~ 69 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++....... ..+. .+...+.......+
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~ 83 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVL 83 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999765 99999998765322110 0000 00000000000000
Q ss_pred -cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 70 -GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 70 -~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
... ..+++..+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++|||++| ||+..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~al~~~p~lllLDEPt~g---LD~~~ 149 (230)
T TIGR01184 84 PDLSKSERRAIVEEHIALVGLTEAA---DKRPGQL-----SGGM---KQRVAIARALSIRPKVLLLDEPFGA---LDALT 149 (230)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHH---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEcCCCcC---CCHHH
Confidence 000 011233456666775432 6678888 9999 999998 89999999999999999 99888
Q ss_pred hhceeEEEEc
Q psy2657 144 QRHFYVFALR 153 (163)
Q Consensus 144 ~~~~~~~~l~ 153 (163)
++.+..+...
T Consensus 150 ~~~l~~~l~~ 159 (230)
T TIGR01184 150 RGNLQEELMQ 159 (230)
T ss_pred HHHHHHHHHH
Confidence 8776554443
No 34
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.2e-25 Score=164.25 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=93.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCC-----c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAG-----R 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~-----~ 67 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++........ .+.. +...+..... .
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLK 98 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHH
Confidence 5899999999999999999999999999999765 999999887643221100 0000 0000000000 0
Q ss_pred eecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 68 NFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 68 ~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
.++. ...+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||+| ||+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrl~la~al~~~p~~lllDEPt~~---LD~~ 164 (213)
T cd03259 99 LRGVPKAEIRARVRELLELVGLEGLL---NRYPHEL-----SGGQ---QQRVALARALAREPSLLLLDEPLSA---LDAK 164 (213)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhh---hcChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---CCHH
Confidence 0000 0011233456666765432 6778888 9999 999998 89999999999999999 9988
Q ss_pred hhhceeEEEEc
Q psy2657 143 LQRHFYVFALR 153 (163)
Q Consensus 143 ~~~~~~~~~l~ 153 (163)
.+..+..+...
T Consensus 165 ~~~~l~~~l~~ 175 (213)
T cd03259 165 LREELREELKE 175 (213)
T ss_pred HHHHHHHHHHH
Confidence 87666554443
No 35
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=1.2e-24 Score=159.51 Aligned_cols=137 Identities=15% Similarity=0.243 Sum_probs=94.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC-----------CCH-HHHHHHHhccccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY-----------TSS-EMLQKVLEKPLEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~ 66 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++... ... ......+..++....
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~- 97 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGL- 97 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhh-
Confidence 5899999999999999999999999999999765 9999998775320 000 000000000000000
Q ss_pred ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 67 RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
... ....+++..+++.+++.+.. ++.+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..+
T Consensus 98 ~~~-~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~---LD~~~~ 162 (205)
T cd03226 98 KEL-DAGNEQAETVLKDLDLYALK---ERHPLSL-----SGGQ---KQRLAIAAALLSGKDLLIFDEPTSG---LDYKNM 162 (205)
T ss_pred hhc-CccHHHHHHHHHHcCCchhc---CCCchhC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCCcc---CCHHHH
Confidence 000 01112344566777775433 7778888 9999 999998 89999999999999999 999888
Q ss_pred hceeEEEEc
Q psy2657 145 RHFYVFALR 153 (163)
Q Consensus 145 ~~~~~~~l~ 153 (163)
..+..+...
T Consensus 163 ~~l~~~l~~ 171 (205)
T cd03226 163 ERVGELIRE 171 (205)
T ss_pred HHHHHHHHH
Confidence 777554433
No 36
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=1.1e-24 Score=158.03 Aligned_cols=139 Identities=14% Similarity=0.237 Sum_probs=94.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-HHHHHHHHhccccc-----c-----CCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-SEMLQKVLEKPLEK-----K-----AGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~-----~~~ 67 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.++|.++..... .......+...... . ...
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl 90 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDV 90 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHH
Confidence 5899999999999999999999999999999765 999999988742211 11111111100000 0 000
Q ss_pred ee-----cCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 NF-----GPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 ~~-----~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.+ +... .+++...++.+++.+.. ++++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~-- 157 (190)
T TIGR01166 91 AFGPLNLGLSEAEVERRVREALTAVGASGLR---ERPTHCL-----SGGE---KKRVAIAGAVAMRPDVLLLDEPTAG-- 157 (190)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCchhhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc--
Confidence 00 0000 11233455666665433 6778888 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..+..+
T Consensus 158 -LD~~~~~~~~~~l~~ 172 (190)
T TIGR01166 158 -LDPAGREQMLAILRR 172 (190)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999988777655443
No 37
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=5.5e-26 Score=162.28 Aligned_cols=132 Identities=13% Similarity=0.199 Sum_probs=98.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc-------------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK------------------- 59 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~------------------- 59 (163)
+||.+++||+|+|.|||||||||.+.++.|..+| |+|.+++.+++..+.....+.-+..
T Consensus 23 Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~ 102 (243)
T COG1137 23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA 102 (243)
T ss_pred eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHH
Confidence 5899999999999999999999999999998655 9999999999988765544432211
Q ss_pred cccccCCceecCCCCc--eEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 60 PLEKKAGRNFGPPGNK--TMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 60 ~~~~~~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
.++...+.. ....+ ++..+++++++.... +++...| |+|+ |.|+.+ +++.+|+++++|||++|
T Consensus 103 vlE~~~~d~--~~~~~~~~l~~LL~ef~i~hlr---~~~a~sL-----SGGE---RRR~EIARaLa~~P~fiLLDEPFAG 169 (243)
T COG1137 103 VLEIREKDL--KKAERKEELDALLEEFHITHLR---DSKAYSL-----SGGE---RRRVEIARALAANPKFILLDEPFAG 169 (243)
T ss_pred HHhhhhcch--hHHHHHHHHHHHHHHhchHHHh---cCccccc-----ccch---HHHHHHHHHHhcCCCEEEecCCccC
Confidence 011110000 00111 244567777776666 6777777 9999 999998 99999999999999999
Q ss_pred cccCCchhhhcee
Q psy2657 136 SFTIEPRLQRHFY 148 (163)
Q Consensus 136 ~~~l~~~~~~~~~ 148 (163)
+||.....+.
T Consensus 170 ---VDPiaV~dIq 179 (243)
T COG1137 170 ---VDPIAVIDIQ 179 (243)
T ss_pred ---CCchhHHHHH
Confidence 9987765443
No 38
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.6e-25 Score=171.93 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=96.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HHHHHhcccc---------ccCC-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQKVLEKPLE---------KKAG- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~- 66 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++........ ....+..... ....
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni 103 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV 103 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHH
Confidence 5899999999999999999999999999999765 999999988765432211 1111100000 0000
Q ss_pred ----ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 67 ----RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 67 ----~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
..++.. ..+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----SgGq---~qRv~lAraL~~~p~iLlLDEPts~-- 170 (343)
T PRK11153 104 ALPLELAGTPKAEIKARVTELLELVGLSDKA---DRYPAQL-----SGGQ---KQRVAIARALASNPKVLLCDEATSA-- 170 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhh---hCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc--
Confidence 000000 012234566677775443 6778898 9999 999998 89999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++.+
T Consensus 171 -LD~~~~~~l~~~L~~ 185 (343)
T PRK11153 171 -LDPATTRSILELLKD 185 (343)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999887766554443
No 39
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.87 E-value=3.3e-25 Score=171.57 Aligned_cols=138 Identities=14% Similarity=0.261 Sum_probs=97.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---------ccC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---------KKA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---- 65 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++.... .. ....+..... ...
T Consensus 26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~-~~~~ig~v~q~~~~~~~~tv~e~l~~ 103 (306)
T PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RH-ARQRVGVVPQFDNLDPDFTVRENLLV 103 (306)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HH-HHhcEEEEeccCcCCCCCcHHHHHHH
Confidence 6899999999999999999999999999999765 99999998875432 11 1111110000 000
Q ss_pred -CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 -GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 -~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...++... .+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++||||+| |
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~la~aL~~~P~lllLDEPt~g---L 169 (306)
T PRK13537 104 FGRYFGLSAAAARALVPPLLEFAKLENKA---DAKVGEL-----SGGM---KRRLTLARALVNDPDVLVLDEPTTG---L 169 (306)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchHh---cCchhhC-----CHHH---HHHHHHHHHHhCCCCEEEEeCCCcC---C
Confidence 00111111 11233455666765433 6678888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEcC
Q psy2657 140 EPRLQRHFYVFALRL 154 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~ 154 (163)
|+..++.+..++.+.
T Consensus 170 D~~~~~~l~~~l~~l 184 (306)
T PRK13537 170 DPQARHLMWERLRSL 184 (306)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999998887765554
No 40
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=3.5e-25 Score=173.48 Aligned_cols=138 Identities=16% Similarity=0.284 Sum_probs=98.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccccC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---- 65 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++.... ......+... +....
T Consensus 60 is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~--~~~~~~ig~v~q~~~~~~~~tv~e~l~~ 137 (340)
T PRK13536 60 LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA--RLARARIGVVPQFDNLDLEFTVRENLLV 137 (340)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch--HHHhccEEEEeCCccCCCCCcHHHHHHH
Confidence 5899999999999999999999999999999766 99999998865321 1111111100 00000
Q ss_pred -CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 -GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 -~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...++... .+++..+++.++++... +.++.++ |+|| +||+++ +++.+|+++++||||+| |
T Consensus 138 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~---~~~~~~L-----S~G~---kqrv~lA~aL~~~P~lLiLDEPt~g---L 203 (340)
T PRK13536 138 FGRYFGMSTREIEAVIPSLLEFARLESKA---DARVSDL-----SGGM---KRRLTLARALINDPQLLILDEPTTG---L 203 (340)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhh---CCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCCC---C
Confidence 00111110 11223456667776543 6778888 9999 999998 89999999999999999 9
Q ss_pred CchhhhceeEEEEcC
Q psy2657 140 EPRLQRHFYVFALRL 154 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~ 154 (163)
|+..++.+..++...
T Consensus 204 D~~~r~~l~~~l~~l 218 (340)
T PRK13536 204 DPHARHLIWERLRSL 218 (340)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999998887766554
No 41
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.9e-24 Score=170.26 Aligned_cols=136 Identities=14% Similarity=0.206 Sum_probs=95.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-- 70 (163)
+||++++||+++|+||||||||||+|+|+|..+| |+|.++|.++...+.... .|.. +...+.......|+
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 5899999999999999999999999999999766 999999988765432210 0000 00000000000010
Q ss_pred ---CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 71 ---PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 71 ---~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
.. ..+++...++.+++.+.. ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----SgGq---~QRvalARAL~~~P~llLLDEP~s~---LD~~ 168 (356)
T PRK11650 103 IRGMPKAEIEERVAEAARILELEPLL---DRKPREL-----SGGQ---RQRVAMGRAIVREPAVFLFDEPLSN---LDAK 168 (356)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHH
Confidence 00 112344567777775443 7889999 9999 999999 99999999999999999 9988
Q ss_pred hhhceeEE
Q psy2657 143 LQRHFYVF 150 (163)
Q Consensus 143 ~~~~~~~~ 150 (163)
.+..+...
T Consensus 169 ~r~~l~~~ 176 (356)
T PRK11650 169 LRVQMRLE 176 (356)
T ss_pred HHHHHHHH
Confidence 77765443
No 42
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=2.4e-24 Score=158.45 Aligned_cols=137 Identities=19% Similarity=0.276 Sum_probs=93.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc-----cCCce-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK-----KAGRN----- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----- 68 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++....... ....+...... ....+
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~~~t~~~~l~ 98 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKE-LRRKVGLVFQNPDDQFFGPTVEEEVA 98 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHH-HHhhceEEecChhhhcCCCcHHHHHH
Confidence 5789999999999999999999999999999765 99999998775432211 11111100000 00000
Q ss_pred e-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 F-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+ +.. ..+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~laral~~~p~llllDEPt~~--- 164 (211)
T cd03225 99 FGLENLGLPEEEIEERVEEALELVGLEGLR---DRSPFTL-----SGGQ---KQRVAIAGVLAMDPDILLLDEPTAG--- 164 (211)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCcHhhh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---
Confidence 0 000 011223355556664322 5667788 9999 999998 89999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 165 LD~~~~~~~~~~l~ 178 (211)
T cd03225 165 LDPAGRRELLELLK 178 (211)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988766654443
No 43
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=3.9e-25 Score=173.96 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=97.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-- 70 (163)
+||++++||+++|+||||||||||+++|+|..+| |+|.++|.++........ .|.. +...+.......|+
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLK 102 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHH
Confidence 5789999999999999999999999999999765 999999988754332210 0000 00000000000011
Q ss_pred ------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 71 ------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 71 ------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
....+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~l~L~~~~---~~~~~~L-----SgGq---~QRvaLARaL~~~P~llLLDEP~s~---LD~~ 168 (353)
T TIGR03265 103 NRGMGRAEVAERVAELLDLVGLPGSE---RKYPGQL-----SGGQ---QQRVALARALATSPGLLLLDEPLSA---LDAR 168 (353)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCchh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---CCHH
Confidence 01122345677778886544 7889999 9999 999999 99999999999999999 9988
Q ss_pred hhhceeEEEE
Q psy2657 143 LQRHFYVFAL 152 (163)
Q Consensus 143 ~~~~~~~~~l 152 (163)
.++.+.....
T Consensus 169 ~r~~l~~~L~ 178 (353)
T TIGR03265 169 VREHLRTEIR 178 (353)
T ss_pred HHHHHHHHHH
Confidence 8776654443
No 44
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.8e-25 Score=172.54 Aligned_cols=142 Identities=15% Similarity=0.234 Sum_probs=99.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC------CCCeeeeeeeecCCCCHHHHHH---HH----hccc---c--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP------PETYALTSVPFNFYTSSEMLQK---VL----EKPL---E-- 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~------~g~i~~~~~~~~~~~~~~~~~~---~~----~~~~---~-- 62 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++........... .+ +... .
T Consensus 26 vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~ 105 (326)
T PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPC 105 (326)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCc
Confidence 589999999999999999999999999999874 3889999988765433221110 00 0000 0
Q ss_pred --c---------cCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 63 --K---------KAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 63 --~---------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
. ...........+++..+++.+++.+...+.++++++| |+|| +||+++ +++.+|+++++
T Consensus 106 ~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~L-----SgGq---~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 106 YTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQL-----SGGM---SQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhC-----CHHH---HHHHHHHHHHHhCCCEEEE
Confidence 0 0000000111223556788888875433346789999 9999 999998 99999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEc
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
||||++ ||+..++.+..++.+
T Consensus 178 DEPts~---LD~~~~~~il~lL~~ 198 (326)
T PRK11022 178 DEPTTA---LDVTIQAQIIELLLE 198 (326)
T ss_pred eCCCCC---CCHHHHHHHHHHHHH
Confidence 999999 998877766554443
No 45
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.87 E-value=5e-24 Score=157.10 Aligned_cols=139 Identities=16% Similarity=0.261 Sum_probs=95.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccc---------cccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPL---------EKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~ 67 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++....... .....+.... ......
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV 100 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHH
Confidence 5899999999999999999999999999999755 99999998876433211 1111110000 000000
Q ss_pred -----eecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 -----NFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 -----~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.++.. ..+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~lllLDEPt~~-- 167 (214)
T TIGR02673 101 ALPLEVRGKKEREIQRRVGAALRQVGLEHKA---DAFPEQL-----SGGE---QQRVAIARAIVNSPPLLLADEPTGN-- 167 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhh---hCChhhC-----CHHH---HHHHHHHHHHhCCCCEEEEeCCccc--
Confidence 00000 012233456666765432 6678888 9999 999998 89999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++.+
T Consensus 168 -LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 168 -LDPDLSERILDLLKR 182 (214)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999888776554443
No 46
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.8e-25 Score=168.90 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=97.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-HHHHHHHHhcccc----------ccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-SEMLQKVLEKPLE----------KKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~ 67 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.++|.+++.... .......+..... .....
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l 105 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI 105 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHH
Confidence 5899999999999999999999999999999766 999999988764321 1111111110000 00000
Q ss_pred eec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 NFG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 ~~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.++ .. ..+++...++.+++...+ +.+.++.+| |+|| +||+++ +++.+|+++++|||++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~~~L-----SgGq---~qrv~iAraL~~~P~llllDEPt~g-- 174 (287)
T PRK13637 106 AFGPINLGLSEEEIENRVKRAMNIVGLDYED-YKDKSPFEL-----SGGQ---KRRVAIAGVVAMEPKILILDEPTAG-- 174 (287)
T ss_pred HhHHHHCCCCHHHHHHHHHHHHHHcCCCchh-hccCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEECCccC--
Confidence 010 00 112334567777885111 226778899 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 175 -LD~~~~~~l~~~l~~ 189 (287)
T PRK13637 175 -LDPKGRDEILNKIKE 189 (287)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999888777555443
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.9e-24 Score=158.87 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=94.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCH--HHHHHHHhccc---------cccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSS--EMLQKVLEKPL---------EKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~ 67 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++...... ......+.... ......
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 98 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV 98 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHH
Confidence 5899999999999999999999999999999765 9999999876543321 11111110000 000000
Q ss_pred eec------CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 68 NFG------PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 68 ~~~------~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.+. .. ..+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~ia~al~~~p~llllDEPt~~- 166 (235)
T cd03261 99 AFPLREHTRLSEEEIREIVLEKLEAVGLRGAE---DLYPAEL-----SGGM---KKRVALARALALDPELLLYDEPTAG- 166 (235)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEecCCccc-
Confidence 000 00 011223456666775433 6778888 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEEc
Q psy2657 137 FTIEPRLQRHFYVFALR 153 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++..
T Consensus 167 --LD~~~~~~l~~~l~~ 181 (235)
T cd03261 167 --LDPIASGVIDDLIRS 181 (235)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 998877766554443
No 48
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.87 E-value=7.2e-25 Score=172.48 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=96.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-- 70 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++........ .|.. +...+.......++
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~ 100 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLT 100 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhh
Confidence 5899999999999999999999999999999765 999999988754322110 0000 00000000000000
Q ss_pred -------CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -------PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -------~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.. ..+++...++.+++++.. ++++.+| |+|| +||+++ +++.+|+++++|||+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~L-----SgGq---~QRvalArAL~~~P~llLLDEP~s~--- 166 (353)
T PRK10851 101 VLPRRERPNAAAIKAKVTQLLEMVQLAHLA---DRYPAQL-----SGGQ---KQRVALARALAVEPQILLLDEPFGA--- 166 (353)
T ss_pred hcccccCCCHHHHHHHHHHHHHHcCCchhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcc---
Confidence 00 112344567777775443 7889999 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 167 LD~~~r~~l~~~L~ 180 (353)
T PRK10851 167 LDAQVRKELRRWLR 180 (353)
T ss_pred CCHHHHHHHHHHHH
Confidence 99888866654443
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.7e-24 Score=161.59 Aligned_cols=139 Identities=15% Similarity=0.280 Sum_probs=95.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HHHHHhccccc---cC------Cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQKVLEKPLEK---KA------GR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~------~~ 67 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.++|.++........ ....+...... .. ..
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENV 103 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHH
Confidence 5799999999999999999999999999999766 999999988754432211 11111100000 00 00
Q ss_pred ee-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 NF-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 ~~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.+ +.. ..+.+..+++.+++.+.. ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~lllLDEP~~~-- 170 (233)
T cd03258 104 ALPLEIAGVPKAEIEERVLELLELVGLEDKA---DAYPAQL-----SGGQ---KQRVGIARALANNPKVLLCDEATSA-- 170 (233)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCChhhh---hcChhhC-----CHHH---HHHHHHHHHHhcCCCEEEecCCCCc--
Confidence 00 000 011233456666665433 6678888 9999 999998 89999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++.+
T Consensus 171 -LD~~~~~~l~~~l~~ 185 (233)
T cd03258 171 -LDPETTQSILALLRD 185 (233)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999887776555444
No 50
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6.3e-25 Score=164.56 Aligned_cols=139 Identities=16% Similarity=0.249 Sum_probs=94.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC--HHHHHHHHhccc---------cccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS--SEMLQKVLEKPL---------EKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~ 67 (163)
+||++.+|++++|+||||||||||+++++|.++| |++.++|.++..... .......+.... ......
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 99 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV 99 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHH
Confidence 5899999999999999999999999999999765 999999987754431 111111111000 000000
Q ss_pred e-------------ec---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 68 N-------------FG---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 68 ~-------------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
. ++ ....+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llll 168 (241)
T cd03256 100 LSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA---YQRADQL-----SGGQ---QQRVAIARALMQQPKLILA 168 (241)
T ss_pred HhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh---CCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEE
Confidence 0 00 00011222345556664332 6677888 9999 999998 89999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEc
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
|||++| ||+..+..+..+..+
T Consensus 169 DEPt~~---LD~~~~~~l~~~l~~ 189 (241)
T cd03256 169 DEPVAS---LDPASSRQVMDLLKR 189 (241)
T ss_pred eCcccc---CCHHHHHHHHHHHHH
Confidence 999999 999888776554444
No 51
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.6e-24 Score=169.14 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=96.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-- 70 (163)
+||++++||+++|+||||||||||+|+|+|..+| |+|.++|.++...+.... .|.. +...+.......|+
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence 5899999999999999999999999999999765 999999988764332110 0000 00000000000011
Q ss_pred ---C---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 71 ---P---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 71 ---~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
. ...+++...++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||+.
T Consensus 105 ~~~~~~~~~~~~v~~~l~~~gl~~~~---~r~~~~L-----SgGq---~QRVaLARaL~~~P~lLLLDEP~s~---LD~~ 170 (351)
T PRK11432 105 MLGVPKEERKQRVKEALELVDLAGFE---DRYVDQI-----SGGQ---QQRVALARALILKPKVLLFDEPLSN---LDAN 170 (351)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEcCCccc---CCHH
Confidence 0 1122344566777775543 7889999 9999 999999 99999999999999999 9988
Q ss_pred hhhceeEEE
Q psy2657 143 LQRHFYVFA 151 (163)
Q Consensus 143 ~~~~~~~~~ 151 (163)
.+..+...+
T Consensus 171 ~r~~l~~~l 179 (351)
T PRK11432 171 LRRSMREKI 179 (351)
T ss_pred HHHHHHHHH
Confidence 877665433
No 52
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.87 E-value=7.5e-25 Score=177.22 Aligned_cols=141 Identities=17% Similarity=0.280 Sum_probs=104.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC------CCeeeeeeeecCCCCHHHHHH-------HHhccccc----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP------ETYALTSVPFNFYTSSEMLQK-------VLEKPLEK---- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~------g~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~---- 63 (163)
+||.+.+||+++|+|+|||||||++++++|.+++ |+|.++|.++...+......- +++.++..
T Consensus 28 vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~ 107 (539)
T COG1123 28 VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPV 107 (539)
T ss_pred ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCch
Confidence 6899999999999999999999999999999753 788888876655543322110 01111110
Q ss_pred ------------cCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 64 ------------KAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 64 ------------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
.+....+....+++..+++.+++++.... +++|+|| |||| |||+.+ +++.+|+++++
T Consensus 108 ~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheL-----SGG~---rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 108 MTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQL-----SGGM---RQRVMIAMALALKPKLLIA 178 (539)
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCccc-----CchH---HHHHHHHHHHhCCCCEEEE
Confidence 11111122334567789999999988744 5699999 9999 999987 99999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEc
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
||||.+ ||+..+.++..++.+
T Consensus 179 DEPTTa---LDvt~q~qIL~llk~ 199 (539)
T COG1123 179 DEPTTA---LDVTTQAQILDLLKD 199 (539)
T ss_pred CCCccc---cCHHHHHHHHHHHHH
Confidence 999999 999888776544433
No 53
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.87 E-value=2.7e-24 Score=160.67 Aligned_cols=139 Identities=12% Similarity=0.196 Sum_probs=94.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc---c------ccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK---P------LEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~ 69 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++.........+..+.. . +.......+
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~ 98 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMV 98 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHH
Confidence 5899999999999999999999999999999765 9999999877543322211110000 0 000000000
Q ss_pred c-----C-------------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 70 G-----P-------------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 70 ~-----~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
. . ...+++..+++.+++... .+.++.++ |+|+ +||+++ +++.+|+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----SgG~---~qrv~la~al~~~p~llll 167 (236)
T cd03219 99 AAQARTGSGLLLARARREEREARERAEELLERVGLADL---ADRPAGEL-----SYGQ---QRRLEIARALATDPKLLLL 167 (236)
T ss_pred HHhhccccccccccccccHHHHHHHHHHHHHHcCccch---hhCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEE
Confidence 0 0 001123345566666433 36778888 9999 999998 89999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEc
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
||||++ ||+..+..+..++.+
T Consensus 168 DEPt~~---LD~~~~~~l~~~l~~ 188 (236)
T cd03219 168 DEPAAG---LNPEETEELAELIRE 188 (236)
T ss_pred cCCccc---CCHHHHHHHHHHHHH
Confidence 999999 999888776554443
No 54
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=3.7e-25 Score=172.81 Aligned_cols=139 Identities=13% Similarity=0.171 Sum_probs=95.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HHHHHh----cc---c----cccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQKVLE----KP---L----EKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~~~~~----~~---~----~~~~ 65 (163)
+||+|++||+++|+|+||||||||+++|+|.++| |+|.++|.++........ ....+. .+ + ....
T Consensus 40 vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~ 119 (331)
T PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGE 119 (331)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHH
Confidence 5899999999999999999999999999999765 999999988765432211 111000 00 0 0000
Q ss_pred C-----ceec--CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 66 G-----RNFG--PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 66 ~-----~~~~--~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
. ..+. .. ..+++..+++.+++.. ...++++++| |+|| +||+++ +++.+|+++++||||
T Consensus 120 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~--~~~~~~p~~L-----SgG~---~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 120 IIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP--NLINRYPHEF-----SGGQ---CQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh--HHhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 0000 00 0122345677778742 1236779999 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeEEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l 152 (163)
++ ||+..+..+..++.
T Consensus 190 s~---LD~~~~~~i~~lL~ 205 (331)
T PRK15079 190 SA---LDVSIQAQVVNLLQ 205 (331)
T ss_pred cc---CCHHHHHHHHHHHH
Confidence 99 99888766544433
No 55
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.87 E-value=8.9e-24 Score=156.47 Aligned_cols=138 Identities=18% Similarity=0.242 Sum_probs=94.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HH-HHHhccccc---------cCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQ-KVLEKPLEK---------KAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~-~~~~~~~~~---------~~~ 66 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++........ .. ..+...... ...
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 103 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALEN 103 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHH
Confidence 5799999999999999999999999999999765 999999988765432221 11 111100000 000
Q ss_pred cee-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 RNF-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~~~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..+ ... ..+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||+++
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~illlDEPt~~- 171 (221)
T TIGR02211 104 VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI---NHRPSEL-----SGGE---RQRVAIARALVNQPSLVLADEPTGN- 171 (221)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh---hCChhhC-----CHHH---HHHHHHHHHHhCCCCEEEEeCCCCc-
Confidence 000 000 011233456666665332 6678888 9999 999998 89999999999999999
Q ss_pred ccCCchhhhceeEEEE
Q psy2657 137 FTIEPRLQRHFYVFAL 152 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 172 --LD~~~~~~l~~~l~ 185 (221)
T TIGR02211 172 --LDNNNAKIIFDLML 185 (221)
T ss_pred --CCHHHHHHHHHHHH
Confidence 99887766654443
No 56
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=5.3e-24 Score=159.76 Aligned_cols=138 Identities=14% Similarity=0.243 Sum_probs=91.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccccc---------cCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPLEK---------KAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~ 67 (163)
+||++.+|++++|+||||||||||+++++|.++| |+|.++|.++....... .....+...... ....
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 100 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV 100 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHH
Confidence 5899999999999999999999999999999765 99999998775432211 111111100000 0000
Q ss_pred eec----------------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 68 NFG----------------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 68 ~~~----------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
.++ ....+++..+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~al~~~p~llll 169 (243)
T TIGR02315 101 LHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA---YQRADQL-----SGGQ---QQRVAIARALAQQPDLILA 169 (243)
T ss_pred hhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEE
Confidence 000 00011222344555554322 5667777 9999 999998 99999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEE
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l 152 (163)
|||+++ ||+..++.+..++.
T Consensus 170 DEPt~~---LD~~~~~~l~~~l~ 189 (243)
T TIGR02315 170 DEPIAS---LDPKTSKQVMDYLK 189 (243)
T ss_pred eCCccc---CCHHHHHHHHHHHH
Confidence 999999 99887766644433
No 57
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=9e-25 Score=172.94 Aligned_cols=137 Identities=15% Similarity=0.243 Sum_probs=96.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-- 70 (163)
+||++++||+++|+||||||||||+++|+|..+| |+|.++|.++........ +|.. +...+.......|+
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 112 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLR 112 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHh
Confidence 5799999999999999999999999999999766 999999988754332210 0000 00000000000011
Q ss_pred ---CCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 71 ---PPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 71 ---~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
... .+++...++.+++.+.. ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||+.
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~p~~L-----SgGq---~QRVaLARaL~~~P~llLLDEP~s~---LD~~ 178 (375)
T PRK09452 113 MQKTPAAEITPRVMEALRMVQLEEFA---QRKPHQL-----SGGQ---QQRVAIARAVVNKPKVLLLDESLSA---LDYK 178 (375)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCc---CCHH
Confidence 000 12334566777776543 7889999 9999 999999 99999999999999999 9988
Q ss_pred hhhceeEEE
Q psy2657 143 LQRHFYVFA 151 (163)
Q Consensus 143 ~~~~~~~~~ 151 (163)
.+..+...+
T Consensus 179 ~r~~l~~~L 187 (375)
T PRK09452 179 LRKQMQNEL 187 (375)
T ss_pred HHHHHHHHH
Confidence 877664443
No 58
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.4e-24 Score=158.70 Aligned_cols=137 Identities=16% Similarity=0.269 Sum_probs=93.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cC------C---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KA------G--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~--- 66 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++... .. .....+...... .. .
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~-~~~~~i~~~~q~~~~~~~~tv~~~l~~ 96 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PR-EVRRRIGIVFQDLSVDDELTGWENLYI 96 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hH-HHhhcEEEecCCccccccCcHHHHHHH
Confidence 5899999999999999999999999999998765 9999998776431 11 111111000000 00 0
Q ss_pred --ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
..++.. ..+++..+++.+++.... +.++.+| |+|| +||+++ +++.+|+++++|||+++ |
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qr~~la~al~~~p~llllDEPt~~---L 162 (220)
T cd03265 97 HARLYGVPGAERRERIDELLDFVGLLEAA---DRLVKTY-----SGGM---RRRLEIARSLVHRPEVLFLDEPTIG---L 162 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHHHh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccC---C
Confidence 000110 011234556667775433 6778888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
|+..+..+..++.+
T Consensus 163 D~~~~~~l~~~l~~ 176 (220)
T cd03265 163 DPQTRAHVWEYIEK 176 (220)
T ss_pred CHHHHHHHHHHHHH
Confidence 99887766544433
No 59
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.87 E-value=3e-24 Score=160.07 Aligned_cols=138 Identities=12% Similarity=0.181 Sum_probs=93.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--- 66 (163)
+||++.+|++++|+||||||||||+++++|.++| |++.++|.++............+.... .....
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 98 (232)
T cd03218 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILA 98 (232)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHH
Confidence 5899999999999999999999999999999765 999999987654332221111110000 00000
Q ss_pred --ceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
..++... .+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++| |
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~llllDEPt~~---L 164 (232)
T cd03218 99 VLEIRGLSKKEREEKLEELLEEFHITHLR---KSKASSL-----SGGE---RRRVEIARALATNPKFLLLDEPFAG---V 164 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEecCCccc---C
Confidence 0000000 11223455556664332 6678888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEE
Q psy2657 140 EPRLQRHFYVFAL 152 (163)
Q Consensus 140 ~~~~~~~~~~~~l 152 (163)
|+..++.+..+..
T Consensus 165 D~~~~~~~~~~l~ 177 (232)
T cd03218 165 DPIAVQDIQKIIK 177 (232)
T ss_pred CHHHHHHHHHHHH
Confidence 9988776654443
No 60
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=5.4e-24 Score=156.85 Aligned_cols=139 Identities=16% Similarity=0.239 Sum_probs=94.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccc---------cccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPL---------EKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~ 67 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++....... .....+.... ......
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l 99 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV 99 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHH
Confidence 5799999999999999999999999999999765 99999998775432211 1111111000 000000
Q ss_pred e-----ecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 N-----FGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 ~-----~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
. .+.. ..+++...++.+++.... ++.+.++ |+|+ +|++++ +++.+|+++++|||+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~-- 166 (214)
T cd03292 100 AFALEVTGVPPREIRKRVPAALELVGLSHKH---RALPAEL-----SGGE---QQRVAIARAIVNSPTILIADEPTGN-- 166 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh---hCChhhc-----CHHH---HHHHHHHHHHHcCCCEEEEeCCCCc--
Confidence 0 0000 011233455666665432 6678888 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++.+
T Consensus 167 -LD~~~~~~~~~~l~~ 181 (214)
T cd03292 167 -LDPDTTWEIMNLLKK 181 (214)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 998887776554443
No 61
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.3e-23 Score=156.85 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=95.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HH-HHHhccc---------cccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQ-KVLEKPL---------EKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~-~~~~~~~---------~~~~~ 66 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++........ .. ..+.... .....
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 107 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALEN 107 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHH
Confidence 5899999999999999999999999999999765 999999988764432211 10 1110000 00000
Q ss_pred c-----eecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 R-----NFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~-----~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
. ..+. ...+++..+++.+++.+.. ++.+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgG~---~qrl~la~al~~~p~lllLDEPt~~- 175 (233)
T PRK11629 108 VAMPLLIGKKKPAEINSRALEMLAAVGLEHRA---NHRPSEL-----SGGE---RQRVAIARALVNNPRLVLADEPTGN- 175 (233)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 0 0000 0112334566677775433 6678888 9999 999998 89999999999999999
Q ss_pred ccCCchhhhceeEEEE
Q psy2657 137 FTIEPRLQRHFYVFAL 152 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 176 --LD~~~~~~l~~~l~ 189 (233)
T PRK11629 176 --LDARNADSIFQLLG 189 (233)
T ss_pred --CCHHHHHHHHHHHH
Confidence 99888766654443
No 62
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.2e-25 Score=163.57 Aligned_cols=136 Identities=16% Similarity=0.180 Sum_probs=91.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-------H-H-----HHHHHHhccccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-------S-E-----MLQKVLEKPLEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-------~-~-----~~~~~~~~~~~~~~ 65 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++..... . . .....+..... ..
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~ 101 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLE-LQ 101 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHH-Hc
Confidence 5899999999999999999999999999999765 999998876532100 0 0 00000000000 00
Q ss_pred CceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
+ .......+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++| ||+..
T Consensus 102 ~-~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrl~la~al~~~p~lllLDEPt~~---LD~~~ 166 (220)
T cd03293 102 G-VPKAEARERAEELLELVGLSGFE---NAYPHQL-----SGGM---RQRVALARALAVDPDVLLLDEPFSA---LDALT 166 (220)
T ss_pred C-CCHHHHHHHHHHHHHHcCChhhh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEECCCCCC---CCHHH
Confidence 0 00000012233456666775432 6677888 9999 999998 99999999999999999 99988
Q ss_pred hhceeEEEE
Q psy2657 144 QRHFYVFAL 152 (163)
Q Consensus 144 ~~~~~~~~l 152 (163)
+..+..++.
T Consensus 167 ~~~~~~~l~ 175 (220)
T cd03293 167 REQLQEELL 175 (220)
T ss_pred HHHHHHHHH
Confidence 766655443
No 63
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.86 E-value=8.8e-24 Score=154.89 Aligned_cols=137 Identities=17% Similarity=0.117 Sum_probs=93.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH---HHHHHHhcc---------ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE---MLQKVLEKP---------LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~---~~~~~~~~~---------~~~~~~ 66 (163)
+||.+.+||+++|+||||||||||+++++|.++| |++.++|.++....... .....+... ......
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 96 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEEN 96 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHH
Confidence 5899999999999999999999999999999765 99999998864322111 111111000 000000
Q ss_pred c-----eecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 R-----NFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~-----~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
. ..+. ...+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~l-----S~G~---~qr~~laral~~~p~llllDEPt~~- 164 (206)
T TIGR03608 97 LDLGLKYKKLSKKEKREKKKEALEKVGLNLKL---KQKIYEL-----SGGE---QQRVALARAILKDPPLILADEPTGS- 164 (206)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCcCC-
Confidence 0 0000 0112233456666764332 6678888 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEE
Q psy2657 137 FTIEPRLQRHFYVFA 151 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~ 151 (163)
||+..+..+..+.
T Consensus 165 --LD~~~~~~l~~~l 177 (206)
T TIGR03608 165 --LDPKNRDEVLDLL 177 (206)
T ss_pred --CCHHHHHHHHHHH
Confidence 9988877665443
No 64
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=4.1e-24 Score=156.66 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=93.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--- 66 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++.... ......+... +.....
T Consensus 20 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 97 (204)
T PRK13538 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR--DEYHQDLLYLGHQPGIKTELTALENLRF 97 (204)
T ss_pred ceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch--HHhhhheEEeCCccccCcCCcHHHHHHH
Confidence 5899999999999999999999999999999765 99999998765321 1111110000 000000
Q ss_pred --ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 67 --RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 67 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
..++....+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||+++ ||+.
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~llllDEPt~~---LD~~ 163 (204)
T PRK13538 98 YQRLHGPGDDEALWEALAQVGLAGFE---DVPVRQL-----SAGQ---QRRVALARLWLTRAPLWILDEPFTA---IDKQ 163 (204)
T ss_pred HHHhcCccHHHHHHHHHHHcCCHHHh---hCChhhc-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcc---CCHH
Confidence 000001112233456667775433 6678888 9999 999998 99999999999999999 9988
Q ss_pred hhhceeEEEE
Q psy2657 143 LQRHFYVFAL 152 (163)
Q Consensus 143 ~~~~~~~~~l 152 (163)
.+..+..+..
T Consensus 164 ~~~~l~~~l~ 173 (204)
T PRK13538 164 GVARLEALLA 173 (204)
T ss_pred HHHHHHHHHH
Confidence 8777654443
No 65
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.7e-24 Score=171.27 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=98.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHH---HHHHhccccc---c------CC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEML---QKVLEKPLEK---K------AG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~---~~~~~~~~~~---~------~~ 66 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|+++|.++......... +..+...... . ..
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~en 126 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN 126 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHH
Confidence 5899999999999999999999999999999765 9999999887654332211 1111100000 0 00
Q ss_pred cee-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 RNF-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~~~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..+ +.. ..+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++
T Consensus 127 l~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~---~~~~~~L-----SgGq---~QRv~LArAL~~~P~iLLLDEPts~- 194 (400)
T PRK10070 127 TAFGMELAGINAEERREKALDALRQVGLENYA---HSYPDEL-----SGGM---RQRVGLARALAINPDILLMDEAFSA- 194 (400)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh---hcCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCcc-
Confidence 000 000 012334566777775433 7788899 9999 999998 89999999999999999
Q ss_pred ccCCchhhhceeEEEEcC
Q psy2657 137 FTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~~ 154 (163)
||+..++.+..++.+.
T Consensus 195 --LD~~~r~~l~~~L~~l 210 (400)
T PRK10070 195 --LDPLIRTEMQDELVKL 210 (400)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 9998887776555443
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.86 E-value=9.7e-24 Score=168.17 Aligned_cols=139 Identities=15% Similarity=0.217 Sum_probs=97.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---------ccC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---------KKA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---- 65 (163)
+||.+++||+++|+||||||||||+|+++|.++| |+|.++|.++.........+. +..... ...
T Consensus 22 vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~-ig~v~q~~~l~~~~tv~e~v~~ 100 (402)
T PRK09536 22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VASVPQDTSLSFEFDVRQVVEM 100 (402)
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc-eEEEccCCCCCCCCCHHHHHHh
Confidence 5899999999999999999999999999999765 999999988765433222221 110000 000
Q ss_pred C-c----eec---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 66 G-R----NFG---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 66 ~-~----~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
+ . .++ ....+++...++.+++.+.. ++++.+| |+|| |||+++ +++++|+++++||||++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~---~~~~~~L-----SgGe---rQRv~IArAL~~~P~iLLLDEPtsg 169 (402)
T PRK09536 101 GRTPHRSRFDTWTETDRAAVERAMERTGVAQFA---DRPVTSL-----SGGE---RQRVLLARALAQATPVLLLDEPTAS 169 (402)
T ss_pred ccchhcccccCCCHHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECCccc
Confidence 0 0 011 00112334556667775443 6778888 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEEEcC
Q psy2657 136 SFTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~l~~ 154 (163)
||+..+..+..++...
T Consensus 170 ---LD~~~~~~l~~lL~~l 185 (402)
T PRK09536 170 ---LDINHQVRTLELVRRL 185 (402)
T ss_pred ---CCHHHHHHHHHHHHHH
Confidence 9998777665544443
No 67
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.86 E-value=5.7e-24 Score=164.40 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=97.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---- 65 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++... .. .....+...... ..
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-~~-~~~~~ig~~~q~~~l~~~~tv~e~l~~ 98 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-PK-EVQRNIGYLPEHNPLYLDMYVREYLQF 98 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-hH-HHHhceEEecCCCCCCCCCcHHHHHHH
Confidence 5899999999999999999999999999999765 9999999877542 11 112111110000 00
Q ss_pred -CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 -GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 -~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...++... .+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||++| |
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~lliLDEPt~g---L 164 (301)
T TIGR03522 99 IAGIYGMKGQLLKQRVEEMIELVGLRPEQ---HKKIGQL-----SKGY---RQRVGLAQALIHDPKVLILDEPTTG---L 164 (301)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHh---cCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---C
Confidence 00111111 12344566667776443 6778888 9999 999988 99999999999999999 9
Q ss_pred CchhhhceeEEEEcC
Q psy2657 140 EPRLQRHFYVFALRL 154 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~ 154 (163)
|+..++.+..++...
T Consensus 165 D~~~~~~l~~~l~~~ 179 (301)
T TIGR03522 165 DPNQLVEIRNVIKNI 179 (301)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999887776555443
No 68
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.3e-24 Score=164.63 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=102.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHH-------HHhcc-----ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQK-------VLEKP-----LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~ 66 (163)
+||++++||+++|.|-||||||||+|++.++++| |+|+++|.++........... .+++. .....+
T Consensus 47 ~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~N 126 (386)
T COG4175 47 ASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLEN 126 (386)
T ss_pred ceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhh
Confidence 5899999999999999999999999999999876 999999999887765543211 11111 111111
Q ss_pred ceecCC--------CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 RNFGPP--------GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
-.|+.+ .++++.+.++.+|+.... +++|+|| |+|| +||+.+ |++.+|+++++|||++.
T Consensus 127 v~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~---~~yp~eL-----SGGM---qQRVGLARAla~~~~IlLMDEaFSA- 194 (386)
T COG4175 127 VAFGLEVQGVPKAEREERALEALELVGLEGYA---DKYPNEL-----SGGM---QQRVGLARALANDPDILLMDEAFSA- 194 (386)
T ss_pred hhcceeecCCCHHHHHHHHHHHHHHcCchhhh---hcCcccc-----cchH---HHHHHHHHHHccCCCEEEecCchhh-
Confidence 223221 133566777888886655 9999999 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeE
Q psy2657 137 FTIEPRLQRHFYV 149 (163)
Q Consensus 137 ~~l~~~~~~~~~~ 149 (163)
|||-.++.+..
T Consensus 195 --LDPLIR~~mQd 205 (386)
T COG4175 195 --LDPLIRTEMQD 205 (386)
T ss_pred --cChHHHHHHHH
Confidence 99877665543
No 69
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.2e-24 Score=157.74 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=91.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC----------CC----HHHHHHHHhcccccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY----------TS----SEMLQKVLEKPLEKK 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~----------~~----~~~~~~~~~~~~~~~ 64 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++... .. .......+.... ..
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~-~~ 97 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA-QL 97 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHH-HH
Confidence 5899999999999999999999999999999765 9999988765310 00 000000000000 00
Q ss_pred CCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
. ........+.+..+++.+++.... ++++.++ |+|| +||+++ +++.+|+++++|||++| ||+.
T Consensus 98 ~-~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~~lllDEP~~~---LD~~ 162 (210)
T cd03269 98 K-GLKKEEARRRIDEWLERLELSEYA---NKRVEEL-----SKGN---QQKVQFIAAVIHDPELLILDEPFSG---LDPV 162 (210)
T ss_pred c-CCChHHHHHHHHHHHHHcCChHHH---hCcHhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcC---CCHH
Confidence 0 000000112234456666765433 5678888 9999 999988 89999999999999999 9988
Q ss_pred hhhceeEEEE
Q psy2657 143 LQRHFYVFAL 152 (163)
Q Consensus 143 ~~~~~~~~~l 152 (163)
.++.+..+..
T Consensus 163 ~~~~~~~~l~ 172 (210)
T cd03269 163 NVELLKDVIR 172 (210)
T ss_pred HHHHHHHHHH
Confidence 8777655443
No 70
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=8.1e-25 Score=161.73 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=94.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-c-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-R------- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~------- 67 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++... .......+...... ... .
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 101 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE--PAEARRRLGFVSDSTGLYDRLTARENLEY 101 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC--HHHHHhhEEEecCCcccCcCCCHHHHHHH
Confidence 5789999999999999999999999999999765 9999999887532 11111111100000 000 0
Q ss_pred ---eecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 68 ---NFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 68 ---~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
.++.. ..+++..+++.+++.+.. ++++.++ |+|+ +||+++ +++.+|+++++|||+++ |
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~illlDEPt~~---L 167 (218)
T cd03266 102 FAGLYGLKGDELTARLEELADRLGMEELL---DRRVGGF-----STGM---RQKVAIARALVHDPPVLLLDEPTTG---L 167 (218)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHHHH---hhhhhhc-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCcC---C
Confidence 00000 011233456666664332 5667788 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
|+..++.+..+..+
T Consensus 168 D~~~~~~l~~~l~~ 181 (218)
T cd03266 168 DVMATRALREFIRQ 181 (218)
T ss_pred CHHHHHHHHHHHHH
Confidence 99888776555444
No 71
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=5.6e-24 Score=156.74 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=92.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCC-----c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAG-----R 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~-----~ 67 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++........ .+.. +......... .
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLK 98 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999765 999999887643221110 0000 0000000000 0
Q ss_pred eecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 68 NFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 68 ~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
..+. ...+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||++| ||+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qr~~laral~~~p~llllDEPt~~---LD~~ 164 (213)
T cd03301 99 LRKVPKDEIDERVREVAELLQIEHLL---DRKPKQL-----SGGQ---RQRVALGRAIVREPKVFLMDEPLSN---LDAK 164 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHH---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---CCHH
Confidence 0000 0011233445666664332 6778888 9999 999998 89999999999999999 9998
Q ss_pred hhhceeEEEEc
Q psy2657 143 LQRHFYVFALR 153 (163)
Q Consensus 143 ~~~~~~~~~l~ 153 (163)
.++.+..+..+
T Consensus 165 ~~~~l~~~l~~ 175 (213)
T cd03301 165 LRVQMRAELKR 175 (213)
T ss_pred HHHHHHHHHHH
Confidence 87766544433
No 72
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=5.7e-24 Score=157.40 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=92.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---------ccC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---------KKA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---- 65 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.+++... ......+..... ...
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 98 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR--KAARQSLGYCPQFDALFDELTVREHLRF 98 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch--HHHhhhEEEecCcCCccccCCHHHHHHH
Confidence 5899999999999999999999999999999765 99999998764321 111111100000 000
Q ss_pred -CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 -GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 -~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...++... .+++..+++.+++.... +.++.++ |+|+ +||+++ +++.+|+++++|||+++ |
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEP~~~---L 164 (220)
T cd03263 99 YARLKGLPKSEIKEEVELLLRVLGLTDKA---NKRARTL-----SGGM---KRKLSLAIALIGGPSVLLLDEPTSG---L 164 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHHHH---hChhhhC-----CHHH---HHHHHHHHHHhcCCCEEEECCCCCC---C
Confidence 00000010 12233456666775433 5667888 9999 999998 89999999999999999 9
Q ss_pred CchhhhceeEEE
Q psy2657 140 EPRLQRHFYVFA 151 (163)
Q Consensus 140 ~~~~~~~~~~~~ 151 (163)
|+.....+..+.
T Consensus 165 D~~~~~~l~~~l 176 (220)
T cd03263 165 DPASRRAIWDLI 176 (220)
T ss_pred CHHHHHHHHHHH
Confidence 998877665443
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.8e-25 Score=167.01 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=96.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc----------ccCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE----------KKAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 68 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++......... ..+..... ......
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~-~~i~~v~q~~~~~~~~~tv~eni~ 104 (279)
T PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR-HKIGMVFQNPDNQFVGATVEDDVA 104 (279)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH-hhceEEEcChHHhcccccHHHHHH
Confidence 5899999999999999999999999999999765 9999999887543322211 11110000 000000
Q ss_pred ec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 FG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
++ .. ..+++...++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----SgGq---~qrv~lAral~~~p~lLlLDEPt~~--- 170 (279)
T PRK13650 105 FGLENKGIPHEEMKERVNEALELVGMQDFK---EREPARL-----SGGQ---KQRVAIAGAVAMRPKIIILDEATSM--- 170 (279)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCCHhHh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEECCccc---
Confidence 10 00 012344566777775433 6778888 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++..
T Consensus 171 LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 171 LDPEGRLELIKTIKG 185 (279)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999887776554443
No 74
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8.2e-24 Score=167.49 Aligned_cols=135 Identities=18% Similarity=0.237 Sum_probs=93.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCcee---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNF--- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~--- 69 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++........ .|.. +...+.......+
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~ 101 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHh
Confidence 5899999999999999999999999999999765 999999987754322110 0000 0000000000000
Q ss_pred --cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 70 --GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 70 --~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
+.. ..+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~lgL~~~~---~~~~~~L-----SgGq---~QRvaLAraL~~~P~lLLLDEPts~---LD~~ 167 (369)
T PRK11000 102 LAGAKKEEINQRVNQVAEVLQLAHLL---DRKPKAL-----SGGQ---RQRVAIGRTLVAEPSVFLLDEPLSN---LDAA 167 (369)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHH
Confidence 000 012344566777775433 7788999 9999 999998 99999999999999999 9988
Q ss_pred hhhceeE
Q psy2657 143 LQRHFYV 149 (163)
Q Consensus 143 ~~~~~~~ 149 (163)
.+..+..
T Consensus 168 ~~~~l~~ 174 (369)
T PRK11000 168 LRVQMRI 174 (369)
T ss_pred HHHHHHH
Confidence 7765543
No 75
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=5.9e-24 Score=156.12 Aligned_cols=135 Identities=14% Similarity=0.211 Sum_probs=91.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccccc---------CCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKK---------AGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 69 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++... . .....+....... ....+
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~-~~~~~i~~~~q~~~~~~~~tv~e~l~~ 95 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--I-EALRRIGALIEAPGFYPNLTARENLRL 95 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--H-HHHhhEEEecCCCccCccCcHHHHHHH
Confidence 5899999999999999999999999999999765 9999998776432 1 1111111000000 00000
Q ss_pred c----CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 70 G----PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 70 ~----~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
. ....+++...++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEPt~~---LD~~~ 161 (208)
T cd03268 96 LARLLGIRKKRIDEVLDVVGLKDSA---KKKVKGF-----SLGM---KQRLGIALALLGNPDLLILDEPTNG---LDPDG 161 (208)
T ss_pred HHHhcCCcHHHHHHHHHHcCCHHHH---hhhHhhC-----CHHH---HHHHHHHHHHhcCCCEEEECCCccc---CCHHH
Confidence 0 00112233345556664332 5667788 9999 999988 99999999999999999 99988
Q ss_pred hhceeEEEE
Q psy2657 144 QRHFYVFAL 152 (163)
Q Consensus 144 ~~~~~~~~l 152 (163)
+..+..+..
T Consensus 162 ~~~l~~~l~ 170 (208)
T cd03268 162 IKELRELIL 170 (208)
T ss_pred HHHHHHHHH
Confidence 776654433
No 76
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.86 E-value=2.3e-23 Score=154.97 Aligned_cols=139 Identities=15% Similarity=0.202 Sum_probs=94.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--H-HHHHhccccc---cC------C
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--L-QKVLEKPLEK---KA------G 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~-~~~~~~~~~~---~~------~ 66 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++...+.... . ...+...... .. .
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~ 108 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALEN 108 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHH
Confidence 5799999999999999999999999999999765 999999987755432211 1 1111100000 00 0
Q ss_pred cee-----c---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 RNF-----G---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~~~-----~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..+ + ....+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~Ge---~qrl~la~al~~~p~llllDEPt~~- 176 (228)
T PRK10584 109 VELPALLRGESSRQSRNGAKALLEQLGLGKRL---DHLPAQL-----SGGE---QQRVALARAFNGRPDVLFADEPTGN- 176 (228)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 000 0 00012233455666665332 5678888 9999 999998 89999999999999999
Q ss_pred ccCCchhhhceeEEEEc
Q psy2657 137 FTIEPRLQRHFYVFALR 153 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++..
T Consensus 177 --LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 177 --LDRQTGDKIADLLFS 191 (228)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 998887776554443
No 77
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=9.9e-25 Score=166.19 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=94.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH---HHHHHhcc---------ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM---LQKVLEKP---------LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~ 66 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++........ ....+... +.....
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 122 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN 122 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHH
Confidence 5799999999999999999999999999999765 999999987754332111 00000000 000000
Q ss_pred cee-----cC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 RNF-----GP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~~~-----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..+ +. ...+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~Gq---~qrv~lAral~~~p~illLDEPt~~- 190 (269)
T cd03294 123 VAFGLEVQGVPRAEREERAAEALELVGLEGWE---HKYPDEL-----SGGM---QQRVGLARALAVDPDILLMDEAFSA- 190 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh---hCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCcc-
Confidence 000 00 0011233455666664332 6667788 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEEc
Q psy2657 137 FTIEPRLQRHFYVFALR 153 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 191 --LD~~~~~~l~~~l~~ 205 (269)
T cd03294 191 --LDPLIRREMQDELLR 205 (269)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 999887776555443
No 78
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.5e-24 Score=161.19 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=94.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc-----c-----CCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK-----K-----AGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~ 68 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++............+...... . ....
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 100 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLA 100 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHH
Confidence 5899999999999999999999999999999765 99999998875433222111111100000 0 0000
Q ss_pred ec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 FG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+. .. ..+++...++.+++.... +.++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEPt~g--- 166 (274)
T PRK13644 101 FGPENLCLPPIEIRKRVDRALAEIGLEKYR---HRSPKTL-----SGGQ---GQCVALAGILTMEPECLIFDEVTSM--- 166 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHCCCHHHh---cCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 00 00 012233455666665433 6678888 9999 999998 89999999999999999
Q ss_pred CCchhhhceeEEE
Q psy2657 139 IEPRLQRHFYVFA 151 (163)
Q Consensus 139 l~~~~~~~~~~~~ 151 (163)
||+..+..+..+.
T Consensus 167 LD~~~~~~l~~~l 179 (274)
T PRK13644 167 LDPDSGIAVLERI 179 (274)
T ss_pred CCHHHHHHHHHHH
Confidence 9988876665444
No 79
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.86 E-value=6.3e-23 Score=145.51 Aligned_cols=104 Identities=15% Similarity=0.264 Sum_probs=79.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||++++||+++|+||||||||||+++++|.++| |++.+++.++.......... +.+.
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~--------------------~~i~ 78 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR--------------------AGIA 78 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh--------------------cCeE
Confidence 5789999999999999999999999999999765 99999998765432211100 0000
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
...+ + |+|+ +||+++ +++.+|+++++|||+++ ||+..++.+..+..
T Consensus 79 ~~~q-----------------L-----S~G~---~qrl~laral~~~p~illlDEP~~~---LD~~~~~~l~~~l~ 126 (163)
T cd03216 79 MVYQ-----------------L-----SVGE---RQMVEIARALARNARLLILDEPTAA---LTPAEVERLFKVIR 126 (163)
T ss_pred EEEe-----------------c-----CHHH---HHHHHHHHHHhcCCCEEEEECCCcC---CCHHHHHHHHHHHH
Confidence 1100 4 9999 999998 89999999999999999 99888777654443
No 80
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=2e-23 Score=153.75 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=91.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC-CHHHHHHHHhccccc---------cCCc-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT-SSEMLQKVLEKPLEK---------KAGR- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~- 67 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++.... ........+...... ....
T Consensus 19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 98 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENIT 98 (213)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHH
Confidence 5899999999999999999999999999999765 99999998764211 111111111100000 0000
Q ss_pred -----eecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 -----NFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 -----~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
..+.. ..+++..+++.+++.... ++.+.++ |+|+ +|++++ +++.+|+++++|||++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEP~~~-- 165 (213)
T cd03262 99 LAPIKVKGMSKAEAEERALELLEKVGLADKA---DAYPAQL-----SGGQ---QQRVAIARALAMNPKVMLFDEPTSA-- 165 (213)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh---hhCcccc-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC--
Confidence 00000 011223345556664332 6667788 9999 999998 89999999999999999
Q ss_pred cCCchhhhceeEEEE
Q psy2657 138 TIEPRLQRHFYVFAL 152 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 166 -LD~~~~~~l~~~l~ 179 (213)
T cd03262 166 -LDPELVGEVLDVMK 179 (213)
T ss_pred -CCHHHHHHHHHHHH
Confidence 99887766644433
No 81
>PRK10908 cell division protein FtsE; Provisional
Probab=99.86 E-value=2.5e-23 Score=154.24 Aligned_cols=138 Identities=14% Similarity=0.234 Sum_probs=92.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccccc---------cCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPLEK---------KAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~ 67 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++....... .....+...... ....
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV 100 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHH
Confidence 5899999999999999999999999999999765 99999998775432211 111111100000 0000
Q ss_pred ee-----cCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 NF-----GPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 ~~-----~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.+ +... .+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~-- 167 (222)
T PRK10908 101 AIPLIIAGASGDDIRRRVSAALDKVGLLDKA---KNFPIQL-----SGGE---QQRVGIARAVVNKPAVLLADEPTGN-- 167 (222)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCChhhh---hCCchhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCCCc--
Confidence 00 0000 01122345566664332 5667888 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEE
Q psy2657 138 TIEPRLQRHFYVFAL 152 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 168 -LD~~~~~~l~~~l~ 181 (222)
T PRK10908 168 -LDDALSEGILRLFE 181 (222)
T ss_pred -CCHHHHHHHHHHHH
Confidence 99987766654433
No 82
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.86 E-value=2e-24 Score=168.73 Aligned_cols=142 Identities=15% Similarity=0.223 Sum_probs=98.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-----CCCeeeeeeeecCCCCHHHHH---HHH----hccc-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-----PETYALTSVPFNFYTSSEMLQ---KVL----EKPL------- 61 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-----~g~i~~~~~~~~~~~~~~~~~---~~~----~~~~------- 61 (163)
+||+|++||+++|+|+||||||||+++++|.++ .|+|.++|.++.......... ..+ +...
T Consensus 35 vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~ 114 (330)
T PRK09473 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYM 114 (330)
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCC
Confidence 589999999999999999999999999999974 489999998876543222110 000 0000
Q ss_pred cccC----C-ceecCC----CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 62 EKKA----G-RNFGPP----GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 62 ~~~~----~-~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
.... . ..+... ..+++...++.+++++...+.++++++| |+|| +||+++ +++.+|+++++|
T Consensus 115 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~L-----SgG~---~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 115 RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEF-----SGGM---RQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEe
Confidence 0000 0 001000 0123445677788865332336789999 9999 999998 999999999999
Q ss_pred cCCCCcccCCchhhhceeEEEEc
Q psy2657 131 NPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
|||++ ||+..+..+..++.+
T Consensus 187 EPts~---LD~~~~~~i~~lL~~ 206 (330)
T PRK09473 187 EPTTA---LDVTVQAQIMTLLNE 206 (330)
T ss_pred CCCcc---CCHHHHHHHHHHHHH
Confidence 99999 998888766544433
No 83
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-24 Score=165.77 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=96.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC---HHHHHHHHhccccc----------cC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS---SEMLQKVLEKPLEK----------KA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~ 65 (163)
+||+|++||+++|+||||||||||+++++|.++| |+|.++|.++..... .......+...... ..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e 105 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVER 105 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHH
Confidence 5799999999999999999999999999999766 999999988754221 11111111110000 00
Q ss_pred Cceec-----CC---CCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 66 GRNFG-----PP---GNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 66 ~~~~~-----~~---~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
...++ .. ..+++..+++.+++. ... ++.+.+| |+|+ +||+++ +++.+|+++++|||++
T Consensus 106 ~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~---~~~~~~L-----SgGq---~qrv~laraL~~~p~illlDEPt~ 174 (286)
T PRK13646 106 EIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM---SQSPFQM-----SGGQ---MRKIAIVSILAMNPDIIVLDEPTA 174 (286)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh---hCCcccC-----CHHH---HHHHHHHHHHHhCCCEEEEECCcc
Confidence 00010 01 112234566677774 232 5678888 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
| ||+..++.+..++.+
T Consensus 175 ~---LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 175 G---LDPQSKRQVMRLLKS 190 (286)
T ss_pred c---CCHHHHHHHHHHHHH
Confidence 9 999888777655444
No 84
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.2e-24 Score=165.95 Aligned_cols=139 Identities=19% Similarity=0.292 Sum_probs=95.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC---CHHHHHHHHhccccc----------cC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT---SSEMLQKVLEKPLEK----------KA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~ 65 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++.... ........+...... ..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e 105 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEK 105 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHH
Confidence 5899999999999999999999999999999765 99999998875321 111111111100000 00
Q ss_pred Cceec-----CC---CCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 66 GRNFG-----PP---GNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 66 ~~~~~-----~~---~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
...++ .. ..+++...++.+++. ... ++++.+| |+|| +||+++ +++.+|+++++||||+
T Consensus 106 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~---~~~~~~L-----SgGq---~qrv~lAraL~~~P~llllDEPt~ 174 (290)
T PRK13634 106 DICFGPMNFGVSEEDAKQKAREMIELVGLPEELL---ARSPFEL-----SGGQ---MRRVAIAGVLAMEPEVLVLDEPTA 174 (290)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEECCcc
Confidence 00011 00 112334566777875 333 6678888 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
| ||+.....+..++..
T Consensus 175 ~---LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 175 G---LDPKGRKEMMEMFYK 190 (290)
T ss_pred c---CCHHHHHHHHHHHHH
Confidence 9 999888776554433
No 85
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.86 E-value=1.1e-23 Score=166.20 Aligned_cols=139 Identities=13% Similarity=0.151 Sum_probs=96.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC----CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCcee-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP----ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNF- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~----g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~- 69 (163)
+||++++||+++|+||||||||||+|+|+|..+| |++.++|.+++....... ++.. +...+.......|
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~ 103 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFG 103 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHH
Confidence 5799999999999999999999999999998654 889999988754322110 0000 0000000000000
Q ss_pred ----cC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 70 ----GP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 70 ----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
+. ...+++...++.+++.+.. ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||
T Consensus 104 l~~~~~~~~~~~~~v~~~l~~~gL~~~~---~~~~~~L-----SgGq---~QRvaLARAL~~~P~llLLDEP~s~---LD 169 (362)
T TIGR03258 104 LRAQKMPKADIAERVADALKLVGLGDAA---AHLPAQL-----SGGM---QQRIAIARAIAIEPDVLLLDEPLSA---LD 169 (362)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCchh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCcccc---CC
Confidence 00 1112344567777886544 7889999 9999 999999 99999999999999999 99
Q ss_pred chhhhceeEEEEc
Q psy2657 141 PRLQRHFYVFALR 153 (163)
Q Consensus 141 ~~~~~~~~~~~l~ 153 (163)
+..+..+..++..
T Consensus 170 ~~~r~~l~~~l~~ 182 (362)
T TIGR03258 170 ANIRANMREEIAA 182 (362)
T ss_pred HHHHHHHHHHHHH
Confidence 8887666554433
No 86
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.85 E-value=7.6e-24 Score=156.09 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=90.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC---------CCCH------HHHHHHHhccccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF---------YTSS------EMLQKVLEKPLEK 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~---------~~~~------~~~~~~~~~~~~~ 63 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++.. +... ......+......
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~ 97 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG 97 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccc
Confidence 5899999999999999999999999999999765 999998865420 0000 0000000000000
Q ss_pred cCCceecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 64 KAGRNFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 64 ~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
....+.. ...+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++||||++
T Consensus 98 -~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~al~~~p~llllDEPt~~--- 162 (213)
T cd03235 98 -HKGLFRRLSKADKAKVDEALERVGLSELA---DRQIGEL-----SGGQ---QQRVLLARALVQDPDLLLLDEPFAG--- 162 (213)
T ss_pred -ccccccCCCHHHHHHHHHHHHHcCCHHHH---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 0000000 0011233455566664322 5667777 9999 999998 89999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 163 LD~~~~~~l~~~l~~ 177 (213)
T cd03235 163 VDPKTQEDIYELLRE 177 (213)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999888776554443
No 87
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.6e-24 Score=159.64 Aligned_cols=136 Identities=14% Similarity=0.170 Sum_probs=92.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCH-------------HHHHHHHhccccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSS-------------EMLQKVLEKPLEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 65 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++...... ......+..... ..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~-~~ 98 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQ-LA 98 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHH-Hc
Confidence 5899999999999999999999999999999765 9999988775421100 000000000000 00
Q ss_pred CceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
........+++..+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++|||+++ ||+..
T Consensus 99 -~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgGq---~qrl~laral~~~p~lllLDEPt~~---LD~~~ 163 (255)
T PRK11248 99 -GVEKMQRLEIAHQMLKKVGLEGAE---KRYIWQL-----SGGQ---RQRVGIARALAANPQLLLLDEPFGA---LDAFT 163 (255)
T ss_pred -CCCHHHHHHHHHHHHHHcCChhHh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcc---CCHHH
Confidence 000000012234556667775433 6678888 9999 999998 99999999999999999 99888
Q ss_pred hhceeEEEE
Q psy2657 144 QRHFYVFAL 152 (163)
Q Consensus 144 ~~~~~~~~l 152 (163)
+..+..++.
T Consensus 164 ~~~l~~~L~ 172 (255)
T PRK11248 164 REQMQTLLL 172 (255)
T ss_pred HHHHHHHHH
Confidence 766654443
No 88
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.85 E-value=9.4e-24 Score=156.39 Aligned_cols=139 Identities=16% Similarity=0.241 Sum_probs=90.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-c-----ee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-R-----NF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~-----~~ 69 (163)
+||++.+|++++|+||||||||||+++++|.++| |++.++|.++.........+..+...... ... . .+
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL 98 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHH
Confidence 5899999999999999999999999999999765 99999998775443322211111100000 000 0 00
Q ss_pred cCC------CCceEEEEEecC-CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 70 GPP------GNKTMIYFVDDM-NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 70 ~~~------~~~~~~~~l~~~-~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
... ..+.+..+++.+ ++.. ..++++.++ |+|+ +||+++ +++.+|+++++|||++| ||
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~l~~---~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~---LD 164 (222)
T cd03224 99 GAYARRRAKRKARLERVYELFPRLKE---RRKQLAGTL-----SGGE---QQMLAIARALMSRPKLLLLDEPSEG---LA 164 (222)
T ss_pred HhhhcCchhHHHHHHHHHHHHHhhhh---hhhCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEECCCccc---CC
Confidence 000 000111223333 2222 225667777 9999 999998 99999999999999999 99
Q ss_pred chhhhceeEEEEc
Q psy2657 141 PRLQRHFYVFALR 153 (163)
Q Consensus 141 ~~~~~~~~~~~l~ 153 (163)
+..+..+..++.+
T Consensus 165 ~~~~~~l~~~l~~ 177 (222)
T cd03224 165 PKIVEEIFEAIRE 177 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9888776554443
No 89
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-23 Score=166.35 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=93.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-- 70 (163)
+||++++||+++|+||||||||||+|+|.|..+| |+|.++|.+++....... +|.. +...+.......|+
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999765 999999988754332110 0000 00000000000010
Q ss_pred ---C---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 71 ---P---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 71 ---~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
. ...+++...++.+++... .++++.+| |+|| +||+++ +++.+|+++++|||+++ ||+.
T Consensus 118 ~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~~~~L-----SgGq---~QRVaLARAL~~~P~lLLLDEP~s~---LD~~ 183 (377)
T PRK11607 118 QDKLPKAEIASRVNEMLGLVHMQEF---AKRKPHQL-----SGGQ---RQRVALARSLAKRPKLLLLDEPMGA---LDKK 183 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchh---hcCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHH
Confidence 0 011234456677777544 37889999 9999 999999 99999999999999999 9988
Q ss_pred hhhcee
Q psy2657 143 LQRHFY 148 (163)
Q Consensus 143 ~~~~~~ 148 (163)
.+..+.
T Consensus 184 ~r~~l~ 189 (377)
T PRK11607 184 LRDRMQ 189 (377)
T ss_pred HHHHHH
Confidence 876554
No 90
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.85 E-value=2.3e-23 Score=152.40 Aligned_cols=137 Identities=12% Similarity=0.160 Sum_probs=93.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 69 (163)
+||++++||+++|+|+||||||||+++++|.++| |++.++|.++.... . ..+..+.... .......+
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~-~~~~~i~~~~q~~~~~~~~tv~e~l~~ 96 (201)
T cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-D-SIARGLLYLGHAPGIKTTLSVLENLRF 96 (201)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-H-HhhhheEEeccccccCCCcCHHHHHHh
Confidence 5899999999999999999999999999999765 99999988764321 1 1111110000 00000000
Q ss_pred c-C-CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 70 G-P-PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 70 ~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
. . ...+++...++.+++.... ++++.++ |+|+ +|++++ +++.+|+++++|||+++ ||+..++
T Consensus 97 ~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~llllDEPt~~---LD~~~~~ 162 (201)
T cd03231 97 WHADHSDEQVEEALARVGLNGFE---DRPVAQL-----SAGQ---QRRVALARLLLSGRPLWILDEPTTA---LDKAGVA 162 (201)
T ss_pred hcccccHHHHHHHHHHcCChhhh---cCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCC---CCHHHHH
Confidence 0 0 0112233445556665332 6678888 9999 999998 99999999999999999 9999887
Q ss_pred ceeEEEEc
Q psy2657 146 HFYVFALR 153 (163)
Q Consensus 146 ~~~~~~l~ 153 (163)
.+..+...
T Consensus 163 ~l~~~l~~ 170 (201)
T cd03231 163 RFAEAMAG 170 (201)
T ss_pred HHHHHHHH
Confidence 77655443
No 91
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=4.6e-23 Score=143.88 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=99.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh--ccccccCCce-----e--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE--KPLEKKAGRN-----F-- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~-- 69 (163)
+||.+.+||..+|+||||||||||+|.+..+++| |.+++.|++++...+....+.+-. .....+...+ |
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~ 101 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPW 101 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccch
Confidence 5899999999999999999999999999888665 999999999998887766655421 1001111111 1
Q ss_pred ----cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 70 ----GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 70 ----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
.......+..++.++++++.- .+..+.++ |||+ +|+.++ .+..-|+++++||||+. ||+.-
T Consensus 102 ~~r~rr~dr~aa~~llar~~l~~~~--L~k~it~l-----SGGE---~QriAliR~Lq~~P~ILLLDE~TsA---LD~~n 168 (223)
T COG4619 102 QIRNRRPDRAAALDLLARFALPDSI--LTKNITEL-----SGGE---KQRIALIRNLQFMPKILLLDEITSA---LDESN 168 (223)
T ss_pred HHhccCCChHHHHHHHHHcCCchhh--hcchhhhc-----cchH---HHHHHHHHHhhcCCceEEecCchhh---cChhh
Confidence 112233445667777776532 36678888 9999 999998 77778999999999999 88776
Q ss_pred hhcee
Q psy2657 144 QRHFY 148 (163)
Q Consensus 144 ~~~~~ 148 (163)
.+.+.
T Consensus 169 kr~ie 173 (223)
T COG4619 169 KRNIE 173 (223)
T ss_pred HHHHH
Confidence 65543
No 92
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.8e-24 Score=167.99 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=98.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC------CCCeeeeeeeecCCCCHHHHH---HHH----hccc---c--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP------PETYALTSVPFNFYTSSEMLQ---KVL----EKPL---E-- 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~------~g~i~~~~~~~~~~~~~~~~~---~~~----~~~~---~-- 62 (163)
+||+|.+||+++|+|+||||||||+++|+|.++ .|+|.++|.++.......... ..+ +.+. .
T Consensus 26 vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~ 105 (330)
T PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPS 105 (330)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcc
Confidence 589999999999999999999999999999864 389999998875443222111 000 0000 0
Q ss_pred --------c-cCCcee-c---CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecce
Q psy2657 63 --------K-KAGRNF-G---PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI 124 (163)
Q Consensus 63 --------~-~~~~~~-~---~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~ 124 (163)
. .....+ + .. ..+++..+++.+++.+.....+.++++| |+|| +||+++ +++.+|
T Consensus 106 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L-----SgG~---~QRv~iArAL~~~P 177 (330)
T PRK15093 106 ERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL-----TEGE---CQKVMIAIALANQP 177 (330)
T ss_pred ccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC-----CHHH---HHHHHHHHHHHCCC
Confidence 0 000000 0 00 0123456778888865432336779999 9999 999998 999999
Q ss_pred EEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 125 MFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 125 ~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+++++||||++ ||+..++.+..++.+
T Consensus 178 ~llilDEPts~---LD~~~~~~i~~lL~~ 203 (330)
T PRK15093 178 RLLIADEPTNA---MEPTTQAQIFRLLTR 203 (330)
T ss_pred CEEEEeCCCCc---CCHHHHHHHHHHHHH
Confidence 99999999999 998888776555444
No 93
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.6e-23 Score=156.98 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=91.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCcee---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNF--- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~--- 69 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++........ .+.. +...........+
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 100 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLR 100 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhh
Confidence 5899999999999999999999999999999765 999999987643221100 0000 0000000000000
Q ss_pred --cC----C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 70 --GP----P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 70 --~~----~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+. . ..+++..+++.+++.... ++++.++ |+|| +||+++ +++.+|+++++|||+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~llllDEP~~~--- 166 (239)
T cd03296 101 VKPRSERPPEAEIRAKVHELLKLVQLDWLA---DRYPAQL-----SGGQ---RQRVALARALAVEPKVLLLDEPFGA--- 166 (239)
T ss_pred hccccccCCHHHHHHHHHHHHHHcCChhhh---hcChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---
Confidence 00 0 001222345556664332 6678888 9999 999998 89999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 167 LD~~~~~~l~~~l~~ 181 (239)
T cd03296 167 LDAKVRKELRRWLRR 181 (239)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999888766554433
No 94
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-23 Score=158.66 Aligned_cols=139 Identities=16% Similarity=0.263 Sum_probs=93.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC-CHHHHHHHHhccccc-----cCC------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT-SSEMLQKVLEKPLEK-----KAG------ 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~------ 66 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++.... ........+...... ...
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l 99 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDI 99 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHH
Confidence 5899999999999999999999999999999765 99999998874211 111111111100000 000
Q ss_pred ----ceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 67 ----RNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 67 ----~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
...+... .+++...++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++|||+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrl~laraL~~~p~lllLDEPt~~-- 166 (271)
T PRK13638 100 AFSLRNLGVPEAEITRRVDEALTLVDAQHFR---HQPIQCL-----SHGQ---KKRVAIAGALVLQARYLLLDEPTAG-- 166 (271)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh---cCCchhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc--
Confidence 0000000 11122345556664433 6678888 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++.+
T Consensus 167 -LD~~~~~~l~~~l~~ 181 (271)
T PRK13638 167 -LDPAGRTQMIAIIRR 181 (271)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999887766554443
No 95
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=1.8e-23 Score=156.37 Aligned_cols=137 Identities=14% Similarity=0.241 Sum_probs=93.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--- 66 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.++|.++..... ...+. +...... ...
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~-i~~~~q~~~~~~~~t~~~~l~~ 97 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALAR-LGVVFQQPTLDLDLSVRQNLRY 97 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhh-EEEeCCCCCCcccCcHHHHHHH
Confidence 5889999999999999999999999999999765 999999987653321 11111 1000000 000
Q ss_pred --ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...+.. ..+.+..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++| |
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~llllDEP~~~---L 163 (236)
T TIGR03864 98 HAALHGLSRAEARERIAALLARLGLAERA---DDKVREL-----NGGH---RRRVEIARALLHRPALLLLDEPTVG---L 163 (236)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccC---C
Confidence 000000 011233455666665432 6678888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
|+..+..+..+...
T Consensus 164 D~~~~~~l~~~l~~ 177 (236)
T TIGR03864 164 DPASRAAIVAHVRA 177 (236)
T ss_pred CHHHHHHHHHHHHH
Confidence 99888776554443
No 96
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.7e-24 Score=163.79 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=95.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc----------ccCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE----------KKAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 68 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.+++...... ....+..... ......
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~~~q~~~~~~~~~tv~enl~ 104 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD-VRRQVGMVFQNPDNQFVGATVQDDVA 104 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHH-HhhheEEEEeCHHHhcccccHHHHHh
Confidence 5899999999999999999999999999999765 99999998875432221 1111110000 000000
Q ss_pred e-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 F-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+ +.. ..+++...++.+++.... ++.+.++ |+|+ +|++++ +++.+|+++++|||++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEPt~g--- 170 (279)
T PRK13635 105 FGLENIGVPREEMVERVDQALRQVGMEDFL---NREPHRL-----SGGQ---KQRVAIAGVLALQPDIIILDEATSM--- 170 (279)
T ss_pred hhHhhCCCCHHHHHHHHHHHHHHcCChhhh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 0 000 011234455666665433 6778888 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++..
T Consensus 171 LD~~~~~~l~~~l~~ 185 (279)
T PRK13635 171 LDPRGRREVLETVRQ 185 (279)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999888776554443
No 97
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=1.3e-23 Score=163.56 Aligned_cols=134 Identities=18% Similarity=0.300 Sum_probs=102.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHH-----------------------HHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSE-----------------------MLQKV 56 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~-----------------------~~~~~ 56 (163)
+||++.+||.++|+|+||||||||-+++++++++ |.|.|.|+++...+... .+..+
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 6899999999999999999999999999999876 99999998876554332 22333
Q ss_pred HhccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 57 LEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
+.+.+.............+++...++.+|++.... +++|+|+ |+|+ |||++| +++.+|+++++||||+
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r--~RYPhEF-----SGGQ---RQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR--NRYPHEF-----SGGQ---RQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh--hcCCccc-----Ccch---hhHHHHHHHHhcCCcEEEecCCch
Confidence 33333332222222222345667888899976542 6789999 9999 999999 9999999999999999
Q ss_pred CcccCCchhhhce
Q psy2657 135 GSFTIEPRLQRHF 147 (163)
Q Consensus 135 g~~~l~~~~~~~~ 147 (163)
. ||...+.++
T Consensus 456 A---LD~SVQaQv 465 (534)
T COG4172 456 A---LDRSVQAQV 465 (534)
T ss_pred H---hhHHHHHHH
Confidence 9 998776654
No 98
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.85 E-value=1.6e-23 Score=162.02 Aligned_cols=137 Identities=16% Similarity=0.286 Sum_probs=93.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccccC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---- 65 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++.... ......+... +....
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 100 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA--RLARVAIGVVPQFDNLDPEFTVRENLLV 100 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH--HHHhhcEEEEeccccCCcCCcHHHHHHH
Confidence 5899999999999999999999999999998765 99999998764321 1111111000 00000
Q ss_pred -CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 -GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 -~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...++... .+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||+| |
T Consensus 101 ~~~~~~~~~~~~~~~~~~ll~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~al~~~p~lllLDEPt~g---L 166 (303)
T TIGR01288 101 FGRYFGMSTREIEAVIPSLLEFARLESKA---DVRVALL-----SGGM---KRRLTLARALINDPQLLILDEPTTG---L 166 (303)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhHh---cCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcC---C
Confidence 00011000 01122345666665433 6778888 9999 999998 89999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
|+..+..+..+..+
T Consensus 167 D~~~~~~l~~~l~~ 180 (303)
T TIGR01288 167 DPHARHLIWERLRS 180 (303)
T ss_pred CHHHHHHHHHHHHH
Confidence 99988777655444
No 99
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.85 E-value=1.9e-23 Score=155.33 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=92.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--------cCC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------KAG---- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---- 66 (163)
+||++++||+++|+||||||||||+++++|..+| |++.++|.++...+... ....+...... ...
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~l~~~tv~enl~~~ 104 (225)
T PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-YRQQVSYCAQTPTLFGDTVYDNLIFP 104 (225)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH-HHhccEEEecccccccccHHHHHHhH
Confidence 5899999999999999999999999999998655 99999998765433221 11111100000 000
Q ss_pred -ceecCC-CCceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 67 -RNFGPP-GNKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 67 -~~~~~~-~~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
...+.. ..+++..+++.+++.+ .. ++++.++ |+|+ +||+++ +++.+|+++++|||+++ ||+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~---LD~ 170 (225)
T PRK10247 105 WQIRNQQPDPAIFLDDLERFALPDTIL---TKNIAEL-----SGGE---KQRISLIRNLQFMPKVLLLDEITSA---LDE 170 (225)
T ss_pred HhhcCCChHHHHHHHHHHHcCCChHHh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCH
Confidence 000010 1112334566667742 22 5678888 9999 999998 99999999999999999 998
Q ss_pred hhhhceeEE
Q psy2657 142 RLQRHFYVF 150 (163)
Q Consensus 142 ~~~~~~~~~ 150 (163)
..+..+..+
T Consensus 171 ~~~~~l~~~ 179 (225)
T PRK10247 171 SNKHNVNEI 179 (225)
T ss_pred HHHHHHHHH
Confidence 877665443
No 100
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.2e-24 Score=161.26 Aligned_cols=138 Identities=16% Similarity=0.211 Sum_probs=96.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc----------ccCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE----------KKAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 68 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++....... ....+..... ......
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~~~~tv~e~l~ 102 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKW-VRSKVGLVFQDPDDQVFSSTVWDDVA 102 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHH-HHhhEEEEecChhhhhccCcHHHHHH
Confidence 5899999999999999999999999999999765 99999998875432211 1111110000 000000
Q ss_pred ec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 FG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
++ .. ..+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~L-----SgG~---~qrv~laraL~~~p~llllDEPt~~--- 168 (274)
T PRK13647 103 FGPVNMGLDKDEVERRVEEALKAVRMWDFR---DKPPYHL-----SYGQ---KKRVAIAGVLAMDPDVIVLDEPMAY--- 168 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHCCCHHHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECCCcC---
Confidence 10 00 012234556667775433 7788898 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++..
T Consensus 169 LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 169 LDPRGQETLMEILDR 183 (274)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999888776555444
No 101
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.85 E-value=1.1e-23 Score=153.61 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=93.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cC-Cce-----e
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KA-GRN-----F 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-----~ 69 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++..... .....+...... .. ..+ +
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~i~~~~q~~~~~~~~tv~~~l~~ 96 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRD--EPHRNILYLGHLPGLKPELSALENLHF 96 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchH--HhhhheEEeccCcccccCCcHHHHHHH
Confidence 5899999999999999999999999999999765 999999987653321 111111000000 00 000 0
Q ss_pred ----cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 70 ----GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 70 ----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
.....+.+..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEPt~~---LD~~~ 162 (198)
T TIGR01189 97 WAAIHGGAQRTIEDALAAVGLTGFE---DLPAAQL-----SAGQ---QRRLALARLWLSRAPLWILDEPTTA---LDKAG 162 (198)
T ss_pred HHHHcCCcHHHHHHHHHHcCCHHHh---cCChhhc-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcC---CCHHH
Confidence 000011233455666665432 6778888 9999 999998 99999999999999999 99887
Q ss_pred hhceeEEEEc
Q psy2657 144 QRHFYVFALR 153 (163)
Q Consensus 144 ~~~~~~~~l~ 153 (163)
+..+..+..+
T Consensus 163 ~~~l~~~l~~ 172 (198)
T TIGR01189 163 VALLAGLLRA 172 (198)
T ss_pred HHHHHHHHHH
Confidence 7766544443
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.1e-24 Score=163.89 Aligned_cols=139 Identities=15% Similarity=0.298 Sum_probs=95.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC-CHHHHHHHHhcccccc-----C-----Cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT-SSEMLQKVLEKPLEKK-----A-----GR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~-----~~ 67 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++.... .....+..+....... . ..
T Consensus 25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l 104 (283)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDV 104 (283)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHH
Confidence 5899999999999999999999999999999765 99999998874221 1111221111100000 0 00
Q ss_pred -----eecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 -----NFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 -----~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.++... .+++...++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----S~G~---~qrl~laraL~~~p~lLilDEPt~g-- 171 (283)
T PRK13636 105 SFGAVNLKLPEDEVRKRVDNALKRTGIEHLK---DKPTHCL-----SFGQ---KKRVAIAGVLVMEPKVLVLDEPTAG-- 171 (283)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHCCChhhh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccC--
Confidence 001010 12234455666775433 7778888 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++..
T Consensus 172 -LD~~~~~~l~~~l~~ 186 (283)
T PRK13636 172 -LDPMGVSEIMKLLVE 186 (283)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999888766554433
No 103
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.2e-23 Score=153.44 Aligned_cols=135 Identities=15% Similarity=0.284 Sum_probs=90.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 69 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++....... ..+...... .....+
T Consensus 17 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~---~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD---RPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhH---ccEEEEecccccCCCCcHHHHHhc
Confidence 5899999999999999999999999999999765 99999998765332111 000000000 000000
Q ss_pred c--------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 70 G--------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 70 ~--------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
. ....+++...++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||+++ |
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~ia~al~~~p~llllDEP~~~---L 159 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLE---KRLPGEL-----SGGE---RQRVALARVLVRDKPVLLLDEPFAA---L 159 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHH---hCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---C
Confidence 0 00011233345555554322 5667777 9999 999998 89999999999999999 9
Q ss_pred CchhhhceeEEEE
Q psy2657 140 EPRLQRHFYVFAL 152 (163)
Q Consensus 140 ~~~~~~~~~~~~l 152 (163)
|+..+..+..+..
T Consensus 160 D~~~~~~l~~~l~ 172 (211)
T cd03298 160 DPALRAEMLDLVL 172 (211)
T ss_pred CHHHHHHHHHHHH
Confidence 9887766544433
No 104
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.6e-24 Score=167.86 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=96.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HHHHHh----cc---c----cc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQKVLE----KP---L----EK-- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~~~~~----~~---~----~~-- 63 (163)
+||+|.+||+++|+||||||||||+++++|.++| |+|.++|.++........ +...+. .+ + ..
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~ 113 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQ 113 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHH
Confidence 5899999999999999999999999999999765 999999988765432211 111000 00 0 00
Q ss_pred -------cCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 64 -------KAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 64 -------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
...........+++..+++.+++... ..++++++| |+|| +||+++ +++.+|+++++||||+
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--~~~~~p~~L-----SgGq---~QRv~iArAL~~~P~lLilDEPts 183 (327)
T PRK11308 114 ILEEPLLINTSLSAAERREKALAMMAKVGLRPE--HYDRYPHMF-----SGGQ---RQRIAIARALMLDPDVVVADEPVS 183 (327)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH--HhcCCCccC-----CHHH---HHHHHHHHHHHcCCCEEEEECCCc
Confidence 00000000111234567788888531 226778999 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEE
Q psy2657 135 GSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l 152 (163)
+ ||+..+..+..++.
T Consensus 184 ~---LD~~~~~~i~~lL~ 198 (327)
T PRK11308 184 A---LDVSVQAQVLNLMM 198 (327)
T ss_pred c---CCHHHHHHHHHHHH
Confidence 9 99888776544433
No 105
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=1.5e-23 Score=156.25 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=90.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-c-----ee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-R-----NF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~-----~~ 69 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++...+........+...... ... . .+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 98 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLT 98 (230)
T ss_pred eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHH
Confidence 5899999999999999999999999999999765 99999998876543322211111100000 000 0 00
Q ss_pred c-----CCCCceEEEEEecCC-CCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 70 G-----PPGNKTMIYFVDDMN-MPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 70 ~-----~~~~~~~~~~l~~~~-l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
. ....+....+++.++ +.. ..++++.++ |+|+ +||+++ +++.+|+++++|||+++ ||+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~l~~---~~~~~~~~L-----S~G~---~qrv~la~al~~~p~illlDEPt~~---LD~ 164 (230)
T TIGR03410 99 GLAALPRRSRKIPDEIYELFPVLKE---MLGRRGGDL-----SGGQ---QQQLAIARALVTRPKLLLLDEPTEG---IQP 164 (230)
T ss_pred HHHhcCcchHHHHHHHHHHHHhHHH---HhhCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEecCCccc---CCH
Confidence 0 000000111222222 111 225567777 9999 999998 89999999999999999 999
Q ss_pred hhhhceeEEEEc
Q psy2657 142 RLQRHFYVFALR 153 (163)
Q Consensus 142 ~~~~~~~~~~l~ 153 (163)
..+..+..++..
T Consensus 165 ~~~~~l~~~l~~ 176 (230)
T TIGR03410 165 SIIKDIGRVIRR 176 (230)
T ss_pred HHHHHHHHHHHH
Confidence 888777655443
No 106
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=2.7e-24 Score=158.74 Aligned_cols=135 Identities=7% Similarity=0.059 Sum_probs=92.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--- 66 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++.... ....+.... .....
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~----~~~~i~~~~q~~~~~~~~t~~e~l~~ 105 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD----RSRFMAYLGHLPGLKADLSTLENLHF 105 (214)
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchh----hhhceEEeecCcccccCCcHHHHHHH
Confidence 5899999999999999999999999999999765 99999988764311 011000000 00000
Q ss_pred --ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 67 --RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 67 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
...+....+....+++.+++.... +..+.++ |+|+ +|++++ +++.+|+++++|||+++ ||+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~---LD~~ 171 (214)
T PRK13543 106 LCGLHGRRAKQMPGSALAIVGLAGYE---DTLVRQL-----SAGQ---KKRLALARLWLSPAPLWLLDEPYAN---LDLE 171 (214)
T ss_pred HHHhcCCcHHHHHHHHHHHcCChhhc---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHH
Confidence 000001111222345556665332 6678888 9999 999998 99999999999999999 9998
Q ss_pred hhhceeEEEEc
Q psy2657 143 LQRHFYVFALR 153 (163)
Q Consensus 143 ~~~~~~~~~l~ 153 (163)
..+.+..+...
T Consensus 172 ~~~~l~~~l~~ 182 (214)
T PRK13543 172 GITLVNRMISA 182 (214)
T ss_pred HHHHHHHHHHH
Confidence 88777554443
No 107
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-23 Score=159.89 Aligned_cols=138 Identities=17% Similarity=0.295 Sum_probs=94.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC---CHHHHHHHHhcccccc-----C-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT---SSEMLQKVLEKPLEKK-----A----- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~----- 65 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.+++... ........+...+... .
T Consensus 25 vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~ 104 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLK 104 (288)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHH
Confidence 5899999999999999999999999999999765 99999998875321 1111221111111000 0
Q ss_pred CceecC-----C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 66 GRNFGP-----P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 66 ~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
...++. . ..+++...++.+++.. .+.++.+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~L-----SgGq---kqrvaiA~aL~~~p~illLDEPt~g 174 (288)
T PRK13643 105 DVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKSPFEL-----SGGQ---MRRVAIAGILAMEPEVLVLDEPTAG 174 (288)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh--hhccCCcccC-----CHHH---HHHHHHHHHHHhCCCEEEEECCccC
Confidence 000111 0 0112345566677742 1226678888 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEE
Q psy2657 136 SFTIEPRLQRHFYVFA 151 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~ 151 (163)
||+..++.+..++
T Consensus 175 ---LD~~~~~~l~~~l 187 (288)
T PRK13643 175 ---LDPKARIEMMQLF 187 (288)
T ss_pred ---CCHHHHHHHHHHH
Confidence 9998887765443
No 108
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.8e-23 Score=157.96 Aligned_cols=139 Identities=15% Similarity=0.251 Sum_probs=92.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh---cc------ccccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE---KP------LEKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~--- 66 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++............+. .. +.....
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 103 (255)
T PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLV 103 (255)
T ss_pred eeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHH
Confidence 5889999999999999999999999999999765 999999987754332221111000 00 000000
Q ss_pred ------------ceecCC----C----CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecce
Q psy2657 67 ------------RNFGPP----G----NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI 124 (163)
Q Consensus 67 ------------~~~~~~----~----~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~ 124 (163)
..+... . .+.+..+++.+++... .++++.++ |+|+ +||+++ +++.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---~~~~~~~L-----S~G~---~qrv~la~al~~~p 172 (255)
T PRK11300 104 AQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH---ANRQAGNL-----AYGQ---QRRLEIARCMVTQP 172 (255)
T ss_pred hhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh---hhCChhhC-----CHHH---HHHHHHHHHHhcCC
Confidence 000000 0 0112233445565433 26778888 9999 999998 999999
Q ss_pred EEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 125 MFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 125 ~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+++++|||++| ||+..++.+..++..
T Consensus 173 ~llllDEPt~~---LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 173 EILMLDEPAAG---LNPKETKELDELIAE 198 (255)
T ss_pred CEEEEcCCccC---CCHHHHHHHHHHHHH
Confidence 99999999999 998877666544443
No 109
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.6e-23 Score=154.18 Aligned_cols=135 Identities=15% Similarity=0.212 Sum_probs=91.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-c-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-R------- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~------- 67 (163)
+||++++| +++|+||||||||||+++++|.++| |++.++|.++.... .. ....+...... ... .
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~-~~~~i~~~~q~~~~~~~~tv~~~l~~ 95 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QK-LRRRIGYLPQEFGVYPNFTVREFLDY 95 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HH-HHhheEEecCCCcccccCCHHHHHHH
Confidence 58899999 9999999999999999999999765 99999998765432 11 11111100000 000 0
Q ss_pred ---eecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 68 ---NFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 68 ---~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
..+... .+.+..+++.+++.... +..+.++ |+|+ +||+++ +++.+|+++++|||+++ |
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEPt~~---L 161 (211)
T cd03264 96 IAWLKGIPSKEVKARVDEVLELVNLGDRA---KKKIGSL-----SGGM---RRRVGIAQALVGDPSILIVDEPTAG---L 161 (211)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHCCCHHHH---hCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---C
Confidence 000000 11233455666665332 5678888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEE
Q psy2657 140 EPRLQRHFYVFAL 152 (163)
Q Consensus 140 ~~~~~~~~~~~~l 152 (163)
|+..+..+..+..
T Consensus 162 D~~~~~~l~~~l~ 174 (211)
T cd03264 162 DPEERIRFRNLLS 174 (211)
T ss_pred CHHHHHHHHHHHH
Confidence 9887766644443
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=2.1e-23 Score=156.52 Aligned_cols=138 Identities=9% Similarity=0.157 Sum_probs=93.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccccC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---- 65 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++............+... +....
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 100 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLEL 100 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHH
Confidence 5899999999999999999999999999998655 99999998765433221111100000 00000
Q ss_pred -----Cc----eecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 66 -----GR----NFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 66 -----~~----~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
.. .++.. ..+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~Ge---~qrv~laral~~~p~~lllDE 169 (242)
T TIGR03411 101 ALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA---DRLAGLL-----SHGQ---KQWLEIGMLLMQDPKLLLLDE 169 (242)
T ss_pred hhhcccccccccccccHHHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEecC
Confidence 00 00000 011233455666665432 6678888 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~l 152 (163)
|+++ ||+..++.+..+..
T Consensus 170 Pt~~---LD~~~~~~l~~~l~ 187 (242)
T TIGR03411 170 PVAG---MTDEETEKTAELLK 187 (242)
T ss_pred CccC---CCHHHHHHHHHHHH
Confidence 9999 99988777654443
No 111
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=9.4e-24 Score=158.46 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=93.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--- 66 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++....... ....+.... .....
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~e~l~~ 98 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE-LRRKIGYVIQQIGLFPHMTVEENIAL 98 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHH-hhcceEEEccCccccCCCcHHHHHHH
Confidence 5899999999999999999999999999999765 99999998765432221 111110000 00000
Q ss_pred --ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...+.. ..+++..+++.+++... .+.++++.++ |+|+ +||+++ +++.+|+++++|||++| |
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~---L 166 (242)
T cd03295 99 VPKLLKWPKEKIRERADELLALVGLDPA-EFADRYPHEL-----SGGQ---QQRVGVARALAADPPLLLMDEPFGA---L 166 (242)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCcH-HHHhcChhhC-----CHHH---HHHHHHHHHHhcCCCEEEecCCccc---C
Confidence 000000 01123455677777530 1236778888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEE
Q psy2657 140 EPRLQRHFYVFA 151 (163)
Q Consensus 140 ~~~~~~~~~~~~ 151 (163)
|+..+..+..+.
T Consensus 167 D~~~~~~l~~~L 178 (242)
T cd03295 167 DPITRDQLQEEF 178 (242)
T ss_pred CHHHHHHHHHHH
Confidence 988776554433
No 112
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2e-23 Score=156.56 Aligned_cols=136 Identities=10% Similarity=0.146 Sum_probs=90.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-- 67 (163)
+||++++|++++|+||||||||||++++.|.++| |++.++|.++.........+..+.... ......
T Consensus 22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 101 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMA 101 (241)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhh
Confidence 5899999999999999999999999999999765 999999988754332221111110000 000000
Q ss_pred ---eec---C-CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 68 ---NFG---P-PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 68 ---~~~---~-~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
... . ...+++..+++.+++... .++++.+| |+|+ +||+++ +++.+|+++++|||+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~~--- 167 (241)
T PRK10895 102 VLQIRDDLSAEQREDRANELMEEFHIEHL---RDSMGQSL-----SGGE---RRRVEIARALAANPKFILLDEPFAG--- 167 (241)
T ss_pred hhhcccccCHHHHHHHHHHHHHHcCCHHH---hhcchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---
Confidence 000 0 000112234445555432 25667777 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEE
Q psy2657 139 IEPRLQRHFYVF 150 (163)
Q Consensus 139 l~~~~~~~~~~~ 150 (163)
||+..+..+..+
T Consensus 168 LD~~~~~~l~~~ 179 (241)
T PRK10895 168 VDPISVIDIKRI 179 (241)
T ss_pred CCHHHHHHHHHH
Confidence 998888766443
No 113
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.85 E-value=1.3e-23 Score=166.36 Aligned_cols=140 Identities=17% Similarity=0.201 Sum_probs=96.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee----eecCCCCHHHH--H-HHHhcc---------cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV----PFNFYTSSEML--Q-KVLEKP---------LE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~----~~~~~~~~~~~--~-~~~~~~---------~~ 62 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|+++|. ++......... . ..+... +.
T Consensus 43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~T 122 (382)
T TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLT 122 (382)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCc
Confidence 5899999999999999999999999999999766 99999986 33322221111 0 000000 00
Q ss_pred ccCCcee-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 63 KKAGRNF-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 63 ~~~~~~~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
......+ +.. ..+++..+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 123 v~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~---~~~~~~L-----SgGq---~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 123 VEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA---DKKPGEL-----SGGM---QQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEECC
Confidence 0000000 100 112344567778885443 7889999 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEEcC
Q psy2657 133 TSGSFTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l~~ 154 (163)
+++ ||+..++.+..++...
T Consensus 192 ts~---LD~~~r~~l~~~L~~l 210 (382)
T TIGR03415 192 FSA---LDPLIRTQLQDELLEL 210 (382)
T ss_pred Ccc---CCHHHHHHHHHHHHHH
Confidence 999 9999887776555443
No 114
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.85 E-value=5.1e-24 Score=161.94 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=93.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccccc----cC--C----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPLEK----KA--G---- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~--~---- 66 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++....... .....+...... .. .
T Consensus 30 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 109 (265)
T TIGR02769 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ 109 (265)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHH
Confidence 5899999999999999999999999999999765 99999998775433221 111111100000 00 0
Q ss_pred -------ce--ecC-CCCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 67 -------RN--FGP-PGNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 67 -------~~--~~~-~~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
.. +.. ...+++..+++.+++. ... ++++.++ |+|+ +|++++ +++.+|+++++|||+
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~~L-----SgGe---~qrv~laral~~~p~illLDEPt 178 (265)
T TIGR02769 110 IIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA---DKLPRQL-----SGGQ---LQRINIARALAVKPKLIVLDEAV 178 (265)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCc
Confidence 00 000 0112334556677774 222 5678888 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeEEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l 152 (163)
++ ||+.....+..++.
T Consensus 179 ~~---LD~~~~~~l~~~l~ 194 (265)
T TIGR02769 179 SN---LDMVLQAVILELLR 194 (265)
T ss_pred cc---CCHHHHHHHHHHHH
Confidence 99 99987655544433
No 115
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.85 E-value=1.9e-24 Score=170.39 Aligned_cols=138 Identities=12% Similarity=0.192 Sum_probs=93.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC---HHHHHHHHhc---------cccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS---SEMLQKVLEK---------PLEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~~ 66 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++..... ....+..+.. .+.....
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 95 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGN 95 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHH
Confidence 5789999999999999999999999999999765 999999987643211 0000110000 0000000
Q ss_pred ceec-----CCC-CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 67 RNFG-----PPG-NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 67 ~~~~-----~~~-~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
..++ ... .+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----SgGq---kqRvalAraL~~~p~lllLDEPts~--- 161 (354)
T TIGR02142 96 LRYGMKRARPSERRISFERVIELLGIGHLL---GRLPGRL-----SGGE---KQRVAIGRALLSSPRLLLMDEPLAA--- 161 (354)
T ss_pred HHHHhhccChhHHHHHHHHHHHHcCChhHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEcCCCcC---
Confidence 0000 000 11233456666775433 7778888 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 162 LD~~~~~~l~~~L~ 175 (354)
T TIGR02142 162 LDDPRKYEILPYLE 175 (354)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988766544443
No 116
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=1.2e-23 Score=159.13 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=89.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCH--HHHHHH-HhccccccCCceec--CCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSS--EMLQKV-LEKPLEKKAGRNFG--PPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~--~~~ 73 (163)
+||.+.+||+++|+||||||||||+++++|.++| |+|.+++.++...... ...+.. +...+.......+. ...
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 110 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW 110 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchH
Confidence 5899999999999999999999999999999765 8888877653210000 000000 00000000000000 001
Q ss_pred CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 74 NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 74 ~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
.+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||++| ||+..+..+..++
T Consensus 111 ~~~~~~~l~~~gl~~~~---~~~~~~L-----SgGq---kqrl~laraL~~~p~lllLDEPt~~---LD~~~~~~l~~~L 176 (257)
T PRK11247 111 RDAALQALAAVGLADRA---NEWPAAL-----SGGQ---KQRVALARALIHRPGLLLLDEPLGA---LDALTRIEMQDLI 176 (257)
T ss_pred HHHHHHHHHHcCChhHh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCC---CCHHHHHHHHHHH
Confidence 12233455666765433 6778888 9999 999998 99999999999999999 9988876654433
No 117
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.5e-23 Score=153.17 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=92.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 69 (163)
+||++++||+++|+||||||||||+++++|..+| |+++++|.++... .......+... ........+
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~~tv~~~~~~ 97 (200)
T PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCTYQKQLCFVGHRSGINPYLTLRENCLY 97 (200)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHHHHhheEEeccccccCcCCCHHHHHHH
Confidence 5899999999999999999999999999999765 9999999876431 11111111000 000000000
Q ss_pred c---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 70 G---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 70 ~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
+ ......+...++.++++... +.++.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~~rv~laral~~~p~~lilDEP~~~---LD~~~~ 163 (200)
T PRK13540 98 DIHFSPGAVGITELCRLFSLEHLI---DYPCGLL-----SSGQ---KRQVALLRLWMSKAKLWLLDEPLVA---LDELSL 163 (200)
T ss_pred HHhcCcchHHHHHHHHHcCCchhh---hCChhhc-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcc---cCHHHH
Confidence 0 01111223345555654322 5667788 9999 999998 99999999999999999 998888
Q ss_pred hceeEEEEc
Q psy2657 145 RHFYVFALR 153 (163)
Q Consensus 145 ~~~~~~~l~ 153 (163)
..+..++.+
T Consensus 164 ~~l~~~l~~ 172 (200)
T PRK13540 164 LTIITKIQE 172 (200)
T ss_pred HHHHHHHHH
Confidence 776554443
No 118
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.85 E-value=5.9e-23 Score=156.44 Aligned_cols=138 Identities=12% Similarity=0.194 Sum_probs=93.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhcccc---------ccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPLE---------KKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~ 67 (163)
+||++++|++++|+||||||||||+++|+|.++| |+|.++|.++....... .....+..... .....
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 105 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV 105 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHH
Confidence 5899999999999999999999999999999765 99999998775432211 11111100000 00000
Q ss_pred eec--C--C-C----CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 68 NFG--P--P-G----NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 68 ~~~--~--~-~----~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.+. . . . ..++...++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgGq---~qrv~laral~~~p~lllLDEPt~~- 173 (269)
T PRK11831 106 AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA---KLMPSEL-----SGGM---ARRAALARAIALEPDLIMFDEPFVG- 173 (269)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHcCChhhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCcc-
Confidence 000 0 0 0 01122345666665433 6778888 9999 999998 89999999999999999
Q ss_pred ccCCchhhhceeEEEE
Q psy2657 137 FTIEPRLQRHFYVFAL 152 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 174 --LD~~~~~~l~~~l~ 187 (269)
T PRK11831 174 --QDPITMGVLVKLIS 187 (269)
T ss_pred --CCHHHHHHHHHHHH
Confidence 99988776654443
No 119
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4e-24 Score=159.52 Aligned_cols=132 Identities=18% Similarity=0.323 Sum_probs=88.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 69 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++....... ..+.... .......+
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~---~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR---RPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhh---ccEEEEecccccccCCcHHHHHhc
Confidence 5899999999999999999999999999999765 99999998765332110 0000000 00000000
Q ss_pred c--C------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 70 G--P------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 70 ~--~------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
. . ...+++..+++.+++... .++.+.++ |+|+ +|++++ +++.+|+++++|||++| |
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEP~~g---L 160 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDL---LARLPGQL-----SGGQ---RQRVALARCLVREQPILLLDEPFSA---L 160 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHH---HhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---C
Confidence 0 0 001122334555565432 26667777 9999 999998 89999999999999999 9
Q ss_pred CchhhhceeE
Q psy2657 140 EPRLQRHFYV 149 (163)
Q Consensus 140 ~~~~~~~~~~ 149 (163)
|+..+..+..
T Consensus 161 D~~~~~~~~~ 170 (232)
T PRK10771 161 DPALRQEMLT 170 (232)
T ss_pred CHHHHHHHHH
Confidence 9876655443
No 120
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.2e-23 Score=160.19 Aligned_cols=139 Identities=15% Similarity=0.266 Sum_probs=95.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC---CHHHHHHHHhccc----------cccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT---SSEMLQKVLEKPL----------EKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~ 65 (163)
+||++++||+++|+||||||||||+++|+|.++| |+|.++|.++.... .....+..+.... ....
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e 105 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLK 105 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHH
Confidence 5799999999999999999999999999999776 99999998775321 1111111111000 0000
Q ss_pred Ccee-----cCC---CCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 66 GRNF-----GPP---GNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 66 ~~~~-----~~~---~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
...+ +.. ..+++..+++.+++. ... ++++.+| |+|+ +||+++ +++.+|+++++|||++
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~---~~~~~~L-----SgGq---~qrl~laral~~~p~lLlLDEPt~ 174 (287)
T PRK13641 106 DVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI---SKSPFEL-----SGGQ---MRRVAIAGVMAYEPEILCLDEPAA 174 (287)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEECCCC
Confidence 0000 000 112234556677774 232 6778888 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
| ||+..+..+..+...
T Consensus 175 g---LD~~~~~~l~~~l~~ 190 (287)
T PRK13641 175 G---LDPEGRKEMMQLFKD 190 (287)
T ss_pred C---CCHHHHHHHHHHHHH
Confidence 9 999887766554433
No 121
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.85 E-value=5.5e-24 Score=160.35 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=92.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-------HHHHHHHHhccc---------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-------SEMLQKVLEKPL---------E 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-------~~~~~~~~~~~~---------~ 62 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++..... .......+.... .
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT 101 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCC
Confidence 5899999999999999999999999999999765 999999988753211 011111111000 0
Q ss_pred ccCCcee-----cCCC----CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 63 KKAGRNF-----GPPG----NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 63 ~~~~~~~-----~~~~----~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
......+ .... .+++..+++.+++.... +.++.++ |+|+ +||+++ +++.+|+++++||
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~Gq---~qrv~la~al~~~p~lllLDE 170 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE---TSYPRRL-----SGGQ---QQRVAIARALAMRPEVILFDE 170 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh---hCChhhC-----ChHH---HHHHHHHHHHhcCCCEEEEeC
Confidence 0000000 0000 11223445666665433 6678888 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~ 151 (163)
|+++ ||+..+..+..++
T Consensus 171 Pt~~---LD~~~~~~l~~~l 187 (250)
T PRK11264 171 PTSA---LDPELVGEVLNTI 187 (250)
T ss_pred CCcc---CCHHHHHHHHHHH
Confidence 9999 9998887665443
No 122
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6e-23 Score=157.24 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=94.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc----------cCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK----------KAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 68 (163)
+||++++||+++|+||||||||||++++.|.++| |+|.++|.++............+...... .....
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~ 108 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVA 108 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHH
Confidence 5799999999999999999999999999999765 99999998875322111111111100000 00000
Q ss_pred ecC-----C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 FGP-----P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~~~-----~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+.. . ..+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPt~g--- 174 (280)
T PRK13633 109 FGPENLGIPPEEIRERVDESLKKVGMYEYR---RHAPHLL-----SGGQ---KQRVAIAGILAMRPECIIFDEPTAM--- 174 (280)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHCCCHhHh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 100 0 012233456666775433 6778888 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 175 LD~~~~~~l~~~l~ 188 (280)
T PRK13633 175 LDPSGRREVVNTIK 188 (280)
T ss_pred CCHHHHHHHHHHHH
Confidence 99888776654443
No 123
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.6e-23 Score=153.84 Aligned_cols=134 Identities=13% Similarity=0.193 Sum_probs=92.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--- 66 (163)
+||++++||+++|+||||||||||+++++|..+| |+|.++|.++... . ....+...... ...
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---~-~~~~~~~~~~~~~~~~~~tv~~~l~~ 96 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP---D-VAEACHYLGHRNAMKPALTVAENLEF 96 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch---h-hHhhcEEecCCCcCCCCCcHHHHHHH
Confidence 5899999999999999999999999999999655 9999998775311 1 11111000000 000
Q ss_pred --ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 67 --RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 67 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
..++ ...+++..+++.+++.... +.++.++ |+|+ +||+++ +++.+|+++++|||++| ||+.
T Consensus 97 ~~~~~~-~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~llllDEPt~~---LD~~ 161 (207)
T PRK13539 97 WAAFLG-GEELDIAAALEAVGLAPLA---HLPFGYL-----SAGQ---KRRVALARLLVSNRPIWILDEPTAA---LDAA 161 (207)
T ss_pred HHHhcC-CcHHHHHHHHHHcCCHHHH---cCChhhc-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHH
Confidence 0000 1112234456666765432 6678888 9999 999998 99999999999999999 9988
Q ss_pred hhhceeEEEEc
Q psy2657 143 LQRHFYVFALR 153 (163)
Q Consensus 143 ~~~~~~~~~l~ 153 (163)
.+..+..+...
T Consensus 162 ~~~~l~~~l~~ 172 (207)
T PRK13539 162 AVALFAELIRA 172 (207)
T ss_pred HHHHHHHHHHH
Confidence 88777554443
No 124
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.5e-22 Score=144.35 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=81.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-HHHHHHHHhccccccCCceecCCCCceE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-SEMLQKVLEKPLEKKAGRNFGPPGNKTM 77 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (163)
+||++++||+++|+||||||||||+++++|.+++ |++.++|.+++..+. ....... +
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~--------------------i 78 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR--------------------I 78 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc--------------------E
Confidence 5799999999999999999999999999999765 999999987754321 1111110 0
Q ss_pred EEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 78 IYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 78 ~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
....++..+.. ...+.+.+...+|+|+ +||+++ +++.+|+++++|||++| ||+..+..+..+.
T Consensus 79 ~~~~q~~~~~~-----~~t~~~~l~~~lS~G~---~qr~~la~al~~~p~llilDEP~~~---LD~~~~~~l~~~l 143 (178)
T cd03229 79 GMVFQDFALFP-----HLTVLENIALGLSGGQ---QQRVALARALAMDPDVLLLDEPTSA---LDPITRREVRALL 143 (178)
T ss_pred EEEecCCccCC-----CCCHHHheeecCCHHH---HHHHHHHHHHHCCCCEEEEeCCccc---CCHHHHHHHHHHH
Confidence 00111111100 0011221111159999 999988 99999999999999999 9988776654433
No 125
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=6.3e-23 Score=153.75 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=93.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-HHHHHHHHhcccc---------ccCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-SEMLQKVLEKPLE---------KKAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~ 68 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++..... .......+..... ......
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 99 (240)
T PRK09493 20 IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVM 99 (240)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHH
Confidence 5899999999999999999999999999999765 999999988754211 1111111110000 000000
Q ss_pred ecC------C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 69 FGP------P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 69 ~~~------~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
+.. . ..+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEP~~~-- 166 (240)
T PRK09493 100 FGPLRVRGASKEEAEKQARELLAKVGLAERA---HHYPSEL-----SGGQ---QQRVAIARALAVKPKLMLFDEPTSA-- 166 (240)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCChHHH---hcChhhc-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc--
Confidence 000 0 011223455666664332 6677888 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEE
Q psy2657 138 TIEPRLQRHFYVFAL 152 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 167 -LD~~~~~~l~~~l~ 180 (240)
T PRK09493 167 -LDPELRHEVLKVMQ 180 (240)
T ss_pred -CCHHHHHHHHHHHH
Confidence 99988877655443
No 126
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.4e-23 Score=156.19 Aligned_cols=137 Identities=16% Similarity=0.232 Sum_probs=91.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc--------cccCCcee-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL--------EKKAGRNF- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~- 69 (163)
+||++.+|++++|+||||||||||+++++|.++| |+|.++|.++....... .+..+.... .......+
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~~~q~~~~~~~tv~e~l~~~ 100 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID-LRRKIGMVFQQPHLFEGTVKDNIEYG 100 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHH-hhhcEEEEecCchhchhhHHHHHhcc
Confidence 5899999999999999999999999999999765 99999998765332211 111110000 00000000
Q ss_pred ---cCCCCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 70 ---GPPGNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 70 ---~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
......++..+++.++++ ... ++.+.+| |+|+ +||+++ +++.+|+++++|||+++ ||+..
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~llllDEPt~~---LD~~~ 166 (241)
T PRK14250 101 PMLKGEKNVDVEYYLSIVGLNKEYA---TRDVKNL-----SGGE---AQRVSIARTLANNPEVLLLDEPTSA---LDPTS 166 (241)
T ss_pred hhhcCcHHHHHHHHHHHcCCCHHHh---hCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHHH
Confidence 000011223445566664 222 5667788 9999 999998 89999999999999999 99887
Q ss_pred hhceeEEEE
Q psy2657 144 QRHFYVFAL 152 (163)
Q Consensus 144 ~~~~~~~~l 152 (163)
+..+..++.
T Consensus 167 ~~~l~~~l~ 175 (241)
T PRK14250 167 TEIIEELIV 175 (241)
T ss_pred HHHHHHHHH
Confidence 766544433
No 127
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.84 E-value=1.8e-23 Score=159.06 Aligned_cols=137 Identities=15% Similarity=0.259 Sum_probs=92.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------------- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 63 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.+++.... ......+......
T Consensus 32 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~v~q~~~~~~~~~~tv~~~l 110 (267)
T PRK15112 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY-SYRSQRIRMIFQDPSTSLNPRQRISQIL 110 (267)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch-hhHhccEEEEecCchhhcCcchhHHHHH
Confidence 5899999999999999999999999999999765 999999987753211 1111100000000
Q ss_pred ----cCC-ceecCCCCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 64 ----KAG-RNFGPPGNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 64 ----~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
... ........+.+..+++.+++. ... +..+.+| |+|+ +|++++ +++.+|+++++|||+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEPt~~ 179 (267)
T PRK15112 111 DFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA---SYYPHML-----APGQ---KQRLGLARALILRPKVIIADEALAS 179 (267)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH---hcCchhc-----CHHH---HHHHHHHHHHHhCCCEEEEcCCccc
Confidence 000 000000011233456667773 222 5567788 9999 999998 89999999999999999
Q ss_pred cccCCchhhhceeEEEE
Q psy2657 136 SFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 180 ---LD~~~~~~l~~~l~ 193 (267)
T PRK15112 180 ---LDMSMRSQLINLML 193 (267)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 99888766654433
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=3.6e-23 Score=153.78 Aligned_cols=140 Identities=21% Similarity=0.311 Sum_probs=92.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC--HHHHHHHHh----cc-------ccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS--SEMLQKVLE----KP-------LEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~--~~~~~~~~~----~~-------~~~~~ 65 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++..... .......+. .+ +....
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~ 103 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGE 103 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHH
Confidence 5899999999999999999999999999999765 999999988754331 011111110 00 00000
Q ss_pred Cc-----eecCCCC----ceE-EEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 66 GR-----NFGPPGN----KTM-IYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 66 ~~-----~~~~~~~----~~~-~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
.. .++.... +.. ...++.+++.. .+.+..+.++ |+|+ +||+++ +++.+|+++++|||+
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEPt 173 (228)
T cd03257 104 QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE--EVLNRYPHEL-----SGGQ---RQRVAIARALALNPKLLIADEPT 173 (228)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh--hHhhCCchhc-----CHHH---HHHHHHHHHHhcCCCEEEecCCC
Confidence 00 0000000 011 13445556631 1225667888 9999 999998 899999999999999
Q ss_pred CCcccCCchhhhceeEEEEc
Q psy2657 134 SGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l~ 153 (163)
++ ||+..+..+..++.+
T Consensus 174 ~~---LD~~~~~~l~~~l~~ 190 (228)
T cd03257 174 SA---LDVSVQAQILDLLKK 190 (228)
T ss_pred CC---CCHHHHHHHHHHHHH
Confidence 99 999887766544443
No 129
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.8e-23 Score=156.92 Aligned_cols=139 Identities=18% Similarity=0.265 Sum_probs=95.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-HHHHHHHHhccccc----------cCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-SEMLQKVLEKPLEK----------KAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~ 67 (163)
+||++.+||+++|+||||||||||+++++|.+++ |+|.++|.+++.... .......+...... ....
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i 100 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDV 100 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHH
Confidence 5899999999999999999999999999999765 999999988742111 11111111100000 0000
Q ss_pred eec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 68 NFG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 68 ~~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.++ .. ..+++..+++.+++.+. .++++.+| |+|+ +|++++ +++.+|+++++|||++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~---~~~~~~~L-----S~Gq---~qrv~laral~~~p~llllDEPt~g-- 167 (275)
T PRK13639 101 AFGPLNLGLSKEEVEKRVKEALKAVGMEGF---ENKPPHHL-----SGGQ---KKRVAIAGILAMKPEIIVLDEPTSG-- 167 (275)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchh---hcCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcC--
Confidence 000 00 01223456677777543 37789999 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..+...
T Consensus 168 -LD~~~~~~l~~~l~~ 182 (275)
T PRK13639 168 -LDPMGASQIMKLLYD 182 (275)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999888766554443
No 130
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.1e-23 Score=160.72 Aligned_cols=138 Identities=17% Similarity=0.311 Sum_probs=93.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC---------------CCHHHHHHHHhccccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY---------------TSSEMLQKVLEKPLEK 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 63 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++... .........+......
T Consensus 45 vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 124 (320)
T PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124 (320)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEEC
Confidence 5899999999999999999999999999999766 9999999876432 0111111111100000
Q ss_pred -----cCCc-----eecC-----C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecc
Q psy2657 64 -----KAGR-----NFGP-----P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN 123 (163)
Q Consensus 64 -----~~~~-----~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~ 123 (163)
.... .++. . ..+++..+++.++++. .+.++.+.+| |+|+ +||+++ +++.+
T Consensus 125 ~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--~~~~~~~~~L-----SgGq---kqRvaiAraL~~~ 194 (320)
T PRK13631 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD--SYLERSPFGL-----SGGQ---KRRVAIAGILAIQ 194 (320)
T ss_pred chhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh--hHhcCCcccC-----CHHH---HHHHHHHHHHHcC
Confidence 0000 0110 0 0112334566677742 1226678888 9999 999998 99999
Q ss_pred eEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 124 IMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 124 ~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
|+++++||||+| ||+...+.+..++
T Consensus 195 p~iLLLDEPtsg---LD~~~~~~l~~~L 219 (320)
T PRK13631 195 PEILIFDEPTAG---LDPKGEHEMMQLI 219 (320)
T ss_pred CCEEEEECCccC---CCHHHHHHHHHHH
Confidence 999999999999 9998876664444
No 131
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.84 E-value=9.1e-22 Score=140.78 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=82.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||.+++||+++|+||||||||||+++++|.++| |++.++|.++....... .... +.
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~--------------------i~ 79 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE-LGDH--------------------VG 79 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHH-HHhh--------------------eE
Confidence 4789999999999999999999999999999765 99999998775433211 1100 01
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
.+.++..+... .+.+.+ +|+|+ +||+++ +++.+|+++++|||+++ ||+..+..+..+..+
T Consensus 80 ~~~q~~~~~~~------tv~~~l---LS~G~---~qrv~la~al~~~p~~lllDEPt~~---LD~~~~~~l~~~l~~ 141 (173)
T cd03246 80 YLPQDDELFSG------SIAENI---LSGGQ---RQRLGLARALYGNPRILVLDEPNSH---LDVEGERALNQAIAA 141 (173)
T ss_pred EECCCCccccC------cHHHHC---cCHHH---HHHHHHHHHHhcCCCEEEEECCccc---cCHHHHHHHHHHHHH
Confidence 11111111100 122211 59999 999998 99999999999999999 998887766544433
No 132
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=4.2e-23 Score=168.99 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=94.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccC-----------C-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKA-----------G- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~- 66 (163)
+||++++|++++|+||||||||||+|+++|.++| |++.+++.++....... ....+........ .
T Consensus 22 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~~~~~~~~~ 100 (490)
T PRK10938 22 PSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQ-LQKLVSDEWQRNNTDMLSPGEDDTGR 100 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHH-HHHHhceeccCcchhhcccchhhccc
Confidence 5899999999999999999999999999999765 88888776654322111 1111111010000 0
Q ss_pred cee-----cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 RNF-----GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 ~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
.+. .....+++..+++.+++.... ++++.+| |+|| |||+++ +++.+|+++++||||++ |
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~al~~~p~lllLDEPt~~---L 166 (490)
T PRK10938 101 TTAEIIQDEVKDPARCEQLAQQFGITALL---DRRFKYL-----STGE---TRKTLLCQALMSEPDLLILDEPFDG---L 166 (490)
T ss_pred cHHHhcccchhHHHHHHHHHHHcCCHhhh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEcCCccc---C
Confidence 000 000011233455666765433 7788899 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
|+..++.+..+...
T Consensus 167 D~~~~~~l~~~l~~ 180 (490)
T PRK10938 167 DVASRQQLAELLAS 180 (490)
T ss_pred CHHHHHHHHHHHHH
Confidence 99888776554433
No 133
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.4e-23 Score=158.71 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=93.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC-----------------------CHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT-----------------------SSEMLQK 55 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~-----------------------~~~~~~~ 55 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.+..... .......
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRR 105 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHh
Confidence 5899999999999999999999999999999766 99999876542110 0111111
Q ss_pred HHhccccc-----cC-----CceecC--------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcc
Q psy2657 56 VLEKPLEK-----KA-----GRNFGP--------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLS 117 (163)
Q Consensus 56 ~~~~~~~~-----~~-----~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~ 117 (163)
.+...... .. ...++. ...+++..+++.+++.. .+.++++.+| |+|+ +||++
T Consensus 106 ~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--~~~~~~~~~L-----SgGq---kqrva 175 (305)
T PRK13651 106 RVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE--SYLQRSPFEL-----SGGQ---KRRVA 175 (305)
T ss_pred ceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh--hhhhCChhhC-----CHHH---HHHHH
Confidence 11100000 00 000111 01123445667777742 1226778899 9999 99999
Q ss_pred e--EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 118 L--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 118 ~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
+ +++.+|+++++||||++ ||+..+..+..++.
T Consensus 176 lA~aL~~~P~lLlLDEPt~~---LD~~~~~~l~~~l~ 209 (305)
T PRK13651 176 LAGILAMEPDFLVFDEPTAG---LDPQGVKEILEIFD 209 (305)
T ss_pred HHHHHHhCCCEEEEeCCCCC---CCHHHHHHHHHHHH
Confidence 9 99999999999999999 99988877654443
No 134
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=5.3e-23 Score=145.18 Aligned_cols=132 Identities=15% Similarity=0.216 Sum_probs=95.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc--CCCCCeeeeeeeecCCCC---------HHHHHH-------HHh----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS--LPPETYALTSVPFNFYTS---------SEMLQK-------VLE---- 58 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~--~~~g~i~~~~~~~~~~~~---------~~~~~~-------~~~---- 58 (163)
+||...+|+++.|+|.|||||||++|||.=+ +..|.|.++|..+.-... ...++. .+.
T Consensus 25 vSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNL 104 (256)
T COG4598 25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNL 104 (256)
T ss_pred eeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcch
Confidence 5889999999999999999999999988554 555999999988743221 111111 010
Q ss_pred -cccccc------CCceecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEE
Q psy2657 59 -KPLEKK------AGRNFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMF 126 (163)
Q Consensus 59 -~~~~~~------~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~ 126 (163)
+.+... .-.+.+. ...+++..+++++++.++. +.+|..+ |+|+ +||++| +++.+|++
T Consensus 105 WsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~---~~YP~~L-----SGGQ---QQR~aIARaLameP~v 173 (256)
T COG4598 105 WSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA---DAYPAHL-----SGGQ---QQRVAIARALAMEPEV 173 (256)
T ss_pred hHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh---hcCcccc-----CchH---HHHHHHHHHHhcCCce
Confidence 011100 0011222 2234566789999998877 7889999 9999 999999 99999999
Q ss_pred EEEecCCCCcccCCchhhhc
Q psy2657 127 VSAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 127 i~~deP~~g~~~l~~~~~~~ 146 (163)
+++||||+. |||.+.-.
T Consensus 174 mLFDEPTSA---LDPElVgE 190 (256)
T COG4598 174 MLFDEPTSA---LDPELVGE 190 (256)
T ss_pred EeecCCccc---CCHHHHHH
Confidence 999999999 99987644
No 135
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.84 E-value=4.3e-23 Score=153.33 Aligned_cols=135 Identities=12% Similarity=0.080 Sum_probs=89.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC------HHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS------SEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.+...... .......+...... .+ .....
T Consensus 41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~-~~-~~~~~ 118 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRL-LG-LSRKE 118 (224)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHH-cC-CCHHH
Confidence 5899999999999999999999999999998765 999999876431110 00011111000000 00 00000
Q ss_pred CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
..+++..+++.+++.+.. +.++.+| |+|+ +||+++ +++.+|+++++|||++| ||+..++.+..+
T Consensus 119 ~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~laral~~~p~llllDEP~~g---LD~~~~~~~~~~ 184 (224)
T cd03220 119 IDEKIDEIIEFSELGDFI---DLPVKTY-----SSGM---KARLAFAIATALEPDILLIDEVLAV---GDAAFQEKCQRR 184 (224)
T ss_pred HHHHHHHHHHHcCChhhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHHHHHHHHHH
Confidence 011223345556665433 6678888 9999 999988 89999999999999999 998876655443
Q ss_pred E
Q psy2657 151 A 151 (163)
Q Consensus 151 ~ 151 (163)
.
T Consensus 185 l 185 (224)
T cd03220 185 L 185 (224)
T ss_pred H
Confidence 3
No 136
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.7e-22 Score=145.80 Aligned_cols=136 Identities=18% Similarity=0.123 Sum_probs=83.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CC-----CCeeeeeeeecCCC-CHHHHHHHHh---ccccccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PP-----ETYALTSVPFNFYT-SSEMLQKVLE---KPLEKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~-----g~i~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~--- 66 (163)
||+.|.++++.+|+|||||||||++|++.... -| |+|.++|+++.... ....++..+. .....+..
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIy 105 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIY 105 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHH
Confidence 68899999999999999999999999887653 23 89999999986542 2222222211 11111111
Q ss_pred --ceecCCCCce--------EEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 67 --RNFGPPGNKT--------MIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 67 --~~~~~~~~~~--------~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
-.|++..... +..-+....+.+. ....++.+..| |||| +||+++ +++.+|+++++|||+
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~L-----SGGQ---QQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGL-----SGGQ---QQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCC-----ChhH---HHHHHHHHHHhcCCcEEEecCcc
Confidence 1111111000 0011111222111 01113445555 9999 999999 999999999999999
Q ss_pred CCcccCCchhhhce
Q psy2657 134 SGSFTIEPRLQRHF 147 (163)
Q Consensus 134 ~g~~~l~~~~~~~~ 147 (163)
+. |||.....+
T Consensus 178 SA---LDPIsT~kI 188 (253)
T COG1117 178 SA---LDPISTLKI 188 (253)
T ss_pred cc---cCchhHHHH
Confidence 99 998765443
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6e-23 Score=156.99 Aligned_cols=138 Identities=17% Similarity=0.313 Sum_probs=93.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCcee---------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNF--------- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 69 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++....... ....+..........++
T Consensus 23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~~~~tv~~~l~ 101 (277)
T PRK13652 23 INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIRE-VRKFVGLVFQNPDDQIFSPTVEQDIA 101 (277)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH-HHhheEEEecCcccccccccHHHHHH
Confidence 5899999999999999999999999999999765 99999998775432211 11111100000000000
Q ss_pred ------cCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 70 ------GPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 70 ------~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+... .+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~Gq---~qrl~laraL~~~p~llilDEPt~g--- 167 (277)
T PRK13652 102 FGPINLGLDEETVAHRVSSALHMLGLEELR---DRVPHHL-----SGGE---KKRVAIAGVIAMEPQVLVLDEPTAG--- 167 (277)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHCCChhHh---cCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 0000 01223445566664332 6667788 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..+..|..+...
T Consensus 168 LD~~~~~~l~~~l~~ 182 (277)
T PRK13652 168 LDPQGVKELIDFLND 182 (277)
T ss_pred CCHHHHHHHHHHHHH
Confidence 998877776554433
No 138
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=1.1e-23 Score=157.63 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=91.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc-c---ccC---------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL-E---KKA--------- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~--------- 65 (163)
+||++++||+++|+||||||||||+++|+|.++| |++.++|.+..... .. ....+.... . ...
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-~~-~~~~i~~~~~~~~~~~~~~tv~e~l~ 117 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KK-FLRRIGVVFGQKTQLWWDLPVIDSFY 117 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-hh-hcccEEEEcCCccccCCCCcHHHHHH
Confidence 5899999999999999999999999999999765 99999887642211 10 111000000 0 000
Q ss_pred --CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 66 --GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 66 --~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
...++... .+++..+++.+++.... ++++.++ |+|+ +|++++ +++.+|+++++|||++|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrl~la~al~~~p~llllDEPt~~--- 183 (236)
T cd03267 118 LLAAIYDLPPARFKKRLDELSELLDLEELL---DTPVRQL-----SLGQ---RMRAEIAAALLHEPEILFLDEPTIG--- 183 (236)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCCC---
Confidence 00000000 11223445566664332 6677888 9999 999988 99999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..+...
T Consensus 184 LD~~~~~~l~~~l~~ 198 (236)
T cd03267 184 LDVVAQENIRNFLKE 198 (236)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999887776554443
No 139
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=2.5e-23 Score=151.48 Aligned_cols=135 Identities=8% Similarity=0.052 Sum_probs=89.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc------cccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL------EKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-- 70 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++..... ... ..+.... .......+.
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~-~~~-~~~~~~~~~~~~~tv~~~l~~~~~ 96 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAK-PYC-TYIGHNLGLKLEMTVFENLKFWSE 96 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhh-hhE-EeccCCcCCCccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999765 999999877643210 000 0000000 000000000
Q ss_pred -CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 71 -PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 71 -~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
....+++..+++.+++.... ++.+.++ |+|+ +|++++ +++.+|+++++|||+++ +|+..+..+
T Consensus 97 ~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~~rl~la~al~~~p~~lllDEP~~~---LD~~~~~~l 162 (195)
T PRK13541 97 IYNSAETLYAAIHYFKLHDLL---DEKCYSL-----SSGM---QKIVAIARLIACQSDLWLLDEVETN---LSKENRDLL 162 (195)
T ss_pred hcccHHHHHHHHHHcCCHhhh---ccChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHHHHHHH
Confidence 00111222334555554322 5667888 9999 999998 99999999999999999 998887776
Q ss_pred eEEE
Q psy2657 148 YVFA 151 (163)
Q Consensus 148 ~~~~ 151 (163)
..+.
T Consensus 163 ~~~l 166 (195)
T PRK13541 163 NNLI 166 (195)
T ss_pred HHHH
Confidence 5443
No 140
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.84 E-value=1.9e-23 Score=155.35 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=90.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC-----CC--CCeeeeeeeecCCCC-HHHHHHHHhc--------ccccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL-----PP--ETYALTSVPFNFYTS-SEMLQKVLEK--------PLEKK 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~-----~~--g~i~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~ 64 (163)
+||++.+||+++|+||||||||||+++++|.+ +| |+|.++|.++..... .......+.. .+...
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 98 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIY 98 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHH
Confidence 58999999999999999999999999999987 65 999999987654321 1111111100 00000
Q ss_pred CC-----ceecCC----CCceEEEEEecCCCCCCcCCCCCC--HHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 65 AG-----RNFGPP----GNKTMIYFVDDMNMPEVDAYGTVQ--PHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 65 ~~-----~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~--~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
.. ...+.. ..+++...++.+++.... ++. +.++ |+|+ +||+++ +++.+|+++++||
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~L-----SgG~---~qrv~la~al~~~p~llllDE 167 (227)
T cd03260 99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV---KDRLHALGL-----SGGQ---QQRLCLARALANEPEVLLLDE 167 (227)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH---hccCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeC
Confidence 00 000000 011233455666665332 233 5778 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~ 151 (163)
|+++ ||+..+..+..+.
T Consensus 168 Pt~~---LD~~~~~~l~~~l 184 (227)
T cd03260 168 PTSA---LDPISTAKIEELI 184 (227)
T ss_pred CCcc---CCHHHHHHHHHHH
Confidence 9999 9988776654433
No 141
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=9.7e-23 Score=167.25 Aligned_cols=135 Identities=10% Similarity=0.096 Sum_probs=94.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc---------cccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK---------PLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 69 (163)
+||++.+||+++|+||||||||||+|+++|.++| |+|.++|.++............+.. .+.......+
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 102 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL 102 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhh
Confidence 5899999999999999999999999999999765 9999999887543322111110000 0000000000
Q ss_pred --------cC-C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 70 --------GP-P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 70 --------~~-~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
+. . ..+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~al~~~p~lllLDEPt~~ 171 (501)
T PRK10762 103 GREFVNRFGRIDWKKMYAEADKLLARLNLRFSS---DKLVGEL-----SIGE---QQMVEIAKVLSFESKVIIMDEPTDA 171 (501)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHcCCCCCc---cCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCcCC
Confidence 00 0 011233456677775543 7788999 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeE
Q psy2657 136 SFTIEPRLQRHFYV 149 (163)
Q Consensus 136 ~~~l~~~~~~~~~~ 149 (163)
||+..+..+..
T Consensus 172 ---LD~~~~~~l~~ 182 (501)
T PRK10762 172 ---LTDTETESLFR 182 (501)
T ss_pred ---CCHHHHHHHHH
Confidence 99988766643
No 142
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-21 Score=139.99 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=81.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++..... ......+ +.++ .
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i--------~~~~--~------ 83 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL-ESLRKNI--------AYVP--Q------ 83 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH-HHHHhhE--------EEEc--C------
Confidence 5789999999999999999999999999999765 999999987654321 1111100 0011 1
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
+..+.. ..+.+.+ +|+|+ +||+++ +++.+|+++++|||++| ||+..+..+..+..
T Consensus 84 ----~~~~~~------~t~~e~l---LS~G~---~~rl~la~al~~~p~llllDEP~~g---LD~~~~~~l~~~l~ 140 (171)
T cd03228 84 ----DPFLFS------GTIRENI---LSGGQ---RQRIAIARALLRDPPILILDEATSA---LDPETEALILEALR 140 (171)
T ss_pred ----Cchhcc------chHHHHh---hCHHH---HHHHHHHHHHhcCCCEEEEECCCcC---CCHHHHHHHHHHHH
Confidence 101110 0111211 59999 999998 89999999999999999 99888766644443
No 143
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3e-23 Score=158.05 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=93.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc----cCC------ce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK----KAG------RN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~ 68 (163)
+||.+++||+++|+||||||||||+++|+|.++| |+|.++|.+++....... ...+...... ... ..
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~~~~v~~~~~ 106 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL-RKHIGIVFQNPDNQFVGSIVKYDVA 106 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH-HhheeEEEeChHHhcccccHHHHHH
Confidence 5789999999999999999999999999999765 999999988754322221 1111100000 000 00
Q ss_pred ec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 FG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+. .. ..+++..+++.+++.... ++.+.++ |+|+ +|++++ +++.+|+++++|||++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~lllLDEPt~~--- 172 (269)
T PRK13648 107 FGLENHAVPYDEMHRRVSEALKQVDMLERA---DYEPNAL-----SGGQ---KQRVAIAGVLALNPSVIILDEATSM--- 172 (269)
T ss_pred hhHHhcCCCHHHHHHHHHHHHHHcCCchhh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 00 00 011223445666664332 6667788 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 173 LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 173 LDPDARQNLLDLVRK 187 (269)
T ss_pred CCHHHHHHHHHHHHH
Confidence 998887766554433
No 144
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.8e-23 Score=161.42 Aligned_cols=136 Identities=13% Similarity=0.186 Sum_probs=92.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC---HHHHHHHHhcc---------ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS---SEMLQKVLEKP---------LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~ 66 (163)
+||++++||+++|+||||||||||+++|+|.++| |++.++|.++..... ....+..+... +.....
T Consensus 17 vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 96 (352)
T PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGN 96 (352)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHH
Confidence 5889999999999999999999999999999765 999999987653210 00011111000 000000
Q ss_pred ceec--CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 67 RNFG--PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 67 ~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
..++ ....+++..+++.+++.... ++.+.+| |+|| +||+++ +++.+|+++++|||+++ ||+.
T Consensus 97 l~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgGq---~qRvalaraL~~~p~llLLDEPts~---LD~~ 162 (352)
T PRK11144 97 LRYGMAKSMVAQFDKIVALLGIEPLL---DRYPGSL-----SGGE---KQRVAIGRALLTAPELLLMDEPLAS---LDLP 162 (352)
T ss_pred HHhhhhhhhHHHHHHHHHHcCCchhh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEcCCccc---CCHH
Confidence 0011 01112233456667775433 7778888 9999 999998 99999999999999999 9988
Q ss_pred hhhceeEE
Q psy2657 143 LQRHFYVF 150 (163)
Q Consensus 143 ~~~~~~~~ 150 (163)
.+..+..+
T Consensus 163 ~~~~l~~~ 170 (352)
T PRK11144 163 RKRELLPY 170 (352)
T ss_pred HHHHHHHH
Confidence 77655443
No 145
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=7.7e-24 Score=159.34 Aligned_cols=129 Identities=9% Similarity=0.082 Sum_probs=87.6
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH------HHHHHHhccccccCCceecCCCC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE------MLQKVLEKPLEKKAGRNFGPPGN 74 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 74 (163)
+++++||+++|+||||||||||+++++|.++| |++.+++..+....... .....+..... . ... ..
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~----~-~~~-~~ 93 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITK----D-FYT-HP 93 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhh----h-ccc-cH
Confidence 45668999999999999999999999999765 88988875544322110 11111110000 0 000 01
Q ss_pred ceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 75 KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 75 ~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
.....+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++|||+++ ||+..+..+..++
T Consensus 94 ~~~~~~l~~l~l~~~~---~~~~~~L-----SgGe---~qrv~iaraL~~~p~llllDEPt~~---LD~~~~~~l~~~l 158 (246)
T cd03237 94 YFKTEIAKPLQIEQIL---DREVPEL-----SGGE---LQRVAIAACLSKDADIYLLDEPSAY---LDVEQRLMASKVI 158 (246)
T ss_pred HHHHHHHHHcCCHHHh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CCHHHHHHHHHHH
Confidence 1122345566665432 6778899 9999 999998 99999999999999999 9988876654433
No 146
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.4e-23 Score=157.94 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=92.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC---CHHHHHHHHhccccc-----cCCc---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT---SSEMLQKVLEKPLEK-----KAGR--- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~--- 67 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++.... ........+...... ....
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 105 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLK 105 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHH
Confidence 5799999999999999999999999999999765 99999998765421 111111111100000 0000
Q ss_pred --ee-----cCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 68 --NF-----GPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 68 --~~-----~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
.+ +... .+.+..+++.+++... ..++++.+| |+|+ +||+++ +++.+|+++++|||+++
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgG~---~qrv~la~al~~~p~lllLDEPt~~ 175 (280)
T PRK13649 106 DVAFGPQNFGVSQEEAEALAREKLALVGISES--LFEKNPFEL-----SGGQ---MRRVAIAGILAMEPKILVLDEPTAG 175 (280)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh--hhhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc
Confidence 00 0000 0112234455666421 125667888 9999 999998 89999999999999999
Q ss_pred cccCCchhhhceeEEEE
Q psy2657 136 SFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 176 ---LD~~~~~~l~~~l~ 189 (280)
T PRK13649 176 ---LDPKGRKELMTLFK 189 (280)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 99988776654443
No 147
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.84 E-value=1.3e-22 Score=146.31 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=84.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||++++|++++|+||||||||||++++.|.++| |++.++|.++........... ...|-+..... .
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~----------~i~~~~q~~~~-~ 87 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA----------GIAYVPEDRKR-E 87 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC----------CeEEecCCccc-C
Confidence 5789999999999999999999999999999765 999999987754432211110 00111110000 0
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHH--HhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQY--MDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~--~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
.+ ++ ...+.+-+... +|+|+ +||+++ +++.+|+++++|||+++ ||+..++.+..+..+
T Consensus 88 ~~-----~~------~~t~~e~l~~~~~LS~G~---~qrl~la~al~~~p~llllDEP~~~---LD~~~~~~l~~~l~~ 149 (182)
T cd03215 88 GL-----VL------DLSVAENIALSSLLSGGN---QQKVVLARWLARDPRVLILDEPTRG---VDVGAKAEIYRLIRE 149 (182)
T ss_pred cc-----cC------CCcHHHHHHHHhhcCHHH---HHHHHHHHHHccCCCEEEECCCCcC---CCHHHHHHHHHHHHH
Confidence 00 00 11122322221 69999 999988 99999999999999999 999887776554443
No 148
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.84 E-value=3.1e-23 Score=153.87 Aligned_cols=137 Identities=15% Similarity=0.276 Sum_probs=92.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH---HHHH-------HHhccccccCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE---MLQK-------VLEKPLEKKAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~ 68 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++....... ..+. .+...+... ...
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~-~~~ 97 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVH-TTL 97 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHH-HHH
Confidence 5789999999999999999999999999998765 99999887653211000 0000 000000000 000
Q ss_pred ecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhc
Q psy2657 69 FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 69 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~ 146 (163)
++ ...+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++| ||+..+..
T Consensus 98 ~~-~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~~rv~laral~~~p~llllDEP~~~---LD~~~~~~ 162 (223)
T TIGR03740 98 LG-LPDSRIDEVLNIVDLTNTG---KKKAKQF-----SLGM---KQRLGIAIALLNHPKLLILDEPTNG---LDPIGIQE 162 (223)
T ss_pred cC-CCHHHHHHHHHHcCCcHHH---hhhHhhC-----CHHH---HHHHHHHHHHhcCCCEEEECCCccC---CCHHHHHH
Confidence 00 0112333455666765432 6678888 9999 999988 99999999999999999 99988877
Q ss_pred eeEEEEc
Q psy2657 147 FYVFALR 153 (163)
Q Consensus 147 ~~~~~l~ 153 (163)
+..+..+
T Consensus 163 l~~~L~~ 169 (223)
T TIGR03740 163 LRELIRS 169 (223)
T ss_pred HHHHHHH
Confidence 6555444
No 149
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.1e-23 Score=153.66 Aligned_cols=138 Identities=14% Similarity=0.244 Sum_probs=92.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC-----CHHHHHHHHhccccc---cCC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT-----SSEMLQKVLEKPLEK---KAG---- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~---- 66 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.+++... ........+...... ...
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 100 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQ 100 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHH
Confidence 5899999999999999999999999999999765 99999998764211 011111111100000 000
Q ss_pred -ce-------ecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 67 -RN-------FGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 67 -~~-------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
++ ++.. ..+++..+++.++++.. .++.+.++ |+|+ +||+++ +++.+|+++++|||+
T Consensus 101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---~~~~~~~L-----S~G~---~qrv~laral~~~p~llilDEPt 169 (242)
T PRK11124 101 QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY---ADRFPLHL-----SGGQ---QQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh---hhCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCC
Confidence 00 0000 01123344556666433 26678888 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeEEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l 152 (163)
++ ||+..+..+..++.
T Consensus 170 ~~---LD~~~~~~l~~~l~ 185 (242)
T PRK11124 170 AA---LDPEITAQIVSIIR 185 (242)
T ss_pred Cc---CCHHHHHHHHHHHH
Confidence 99 99888766654443
No 150
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.9e-23 Score=157.08 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=90.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-ce-----e
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-RN-----F 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-----~ 69 (163)
+||.+.+||+++|+||||||||||+++++|.++| |+|.++|.++........ ...+...... ... .+ +
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~~~~tv~e~l~~ 108 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF-ARKVAYLPQQLPAAEGMTVRELVAI 108 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH-hhheEEeccCCCCCCCccHHHHHHh
Confidence 5899999999999999999999999999999765 999999987643322211 1111100000 000 00 0
Q ss_pred c------------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 70 G------------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 70 ~------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
. ....+++...++.+++... .++++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----SgG~---~qrv~laral~~~p~lllLDEPt~~ 177 (265)
T PRK10575 109 GRYPWHGALGRFGAADREKVEEAISLVGLKPL---AHRLVDSL-----SGGE---RQRAWIAMLVAQDSRCLLLDEPTSA 177 (265)
T ss_pred CcccccccccCCCHHHHHHHHHHHHHcCCHHH---hcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc
Confidence 0 0000112234444555332 25567777 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEEE
Q psy2657 136 SFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~l 152 (163)
||+..++.+..++.
T Consensus 178 ---LD~~~~~~~~~~l~ 191 (265)
T PRK10575 178 ---LDIAHQVDVLALVH 191 (265)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 99888766544443
No 151
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=7.3e-23 Score=168.28 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=95.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 69 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++............+.... .......+
T Consensus 30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 109 (510)
T PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF 109 (510)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhc
Confidence 5899999999999999999999999999999765 999999987754332221111010000 00000001
Q ss_pred cCC----CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 70 GPP----GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 70 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
... ..+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||+| ||+..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~la~aL~~~p~lllLDEPt~~---LD~~~ 175 (510)
T PRK15439 110 GLPKRQASMQKMKQLLAALGCQLDL---DSSAGSL-----EVAD---RQIVEILRGLMRDSRILILDEPTAS---LTPAE 175 (510)
T ss_pred ccccchHHHHHHHHHHHHcCCCccc---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECCCCC---CCHHH
Confidence 000 012233456667775433 7788899 9999 999998 89999999999999999 99988
Q ss_pred hhceeEEEE
Q psy2657 144 QRHFYVFAL 152 (163)
Q Consensus 144 ~~~~~~~~l 152 (163)
+..+..++.
T Consensus 176 ~~~l~~~l~ 184 (510)
T PRK15439 176 TERLFSRIR 184 (510)
T ss_pred HHHHHHHHH
Confidence 877655433
No 152
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6e-23 Score=157.36 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=94.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-----CCeeeeeeeecCCCCHHHHHHHHhccc----------cccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-----ETYALTSVPFNFYTSSEMLQKVLEKPL----------EKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 65 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.++|.++........ ...+.... ....
T Consensus 26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~-~~~ig~v~q~~~~~~~~~tv~e 104 (282)
T PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI-REKVGIVFQNPDNQFVGATVGD 104 (282)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH-HhheEEEEECHHHhhccCCHHH
Confidence 5799999999999999999999999999999755 789999988754322221 11111000 0000
Q ss_pred Cceec-----CCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 66 GRNFG-----PPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 66 ~~~~~-----~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
...+. ... .+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~L-----S~G~---~qrv~laral~~~P~llllDEPt~g 173 (282)
T PRK13640 105 DVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI---DSEPANL-----SGGQ---KQRVAIAGILAVEPKIIILDESTSM 173 (282)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh---cCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEECCccc
Confidence 00010 000 11233456777775433 6778888 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEE
Q psy2657 136 SFTIEPRLQRHFYVFA 151 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~ 151 (163)
||+..+..+..++
T Consensus 174 ---LD~~~~~~l~~~l 186 (282)
T PRK13640 174 ---LDPAGKEQILKLI 186 (282)
T ss_pred ---CCHHHHHHHHHHH
Confidence 9988877665444
No 153
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.83 E-value=1.9e-23 Score=154.01 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=91.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHH-------HHhccccc-cC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQK-------VLEKPLEK-KA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~-~~ 65 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++........ .+. .+..++.. ..
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLH 96 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhh
Confidence 5799999999999999999999999999999765 999999987643211100 000 00000000 00
Q ss_pred Ccee-cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 66 GRNF-GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 66 ~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
.... .....+++..+++.+++.+.. ++.+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~llllDEPt~~---LD~~ 162 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIADYL---DRLPEQL-----SGGQ---RQRVALARCLVRPNPILLLDEPFSA---LDPL 162 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHHHh---hCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCcc---CCHH
Confidence 0000 000111233456666765433 6677788 9999 999998 89999999999999999 9988
Q ss_pred hhhceeEEEE
Q psy2657 143 LQRHFYVFAL 152 (163)
Q Consensus 143 ~~~~~~~~~l 152 (163)
.+..+..+..
T Consensus 163 ~~~~~~~~l~ 172 (213)
T TIGR01277 163 LREEMLALVK 172 (213)
T ss_pred HHHHHHHHHH
Confidence 7766544433
No 154
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.83 E-value=3.1e-22 Score=143.81 Aligned_cols=117 Identities=22% Similarity=0.346 Sum_probs=80.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||++++||+++|+||||||||||+++++|..+| |++.++|.++... ....+..+ +.++ ... .
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i--------~~~~--q~~-~-- 85 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKALSSLI--------SVLN--QRP-Y-- 85 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHHHHhhE--------EEEc--cCC-e--
Confidence 5799999999999999999999999999999765 9999998765322 11111100 0111 100 0
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+.. ... . +..+.++ |+|+ +|++++ +++.+|+++++|||+++ ||+..++.+..+.
T Consensus 86 -~~~-~tv--~----~~i~~~L-----S~G~---~qrv~laral~~~p~~lllDEP~~~---LD~~~~~~l~~~l 141 (178)
T cd03247 86 -LFD-TTL--R----NNLGRRF-----SGGE---RQRLALARILLQDAPIVLLDEPTVG---LDPITERQLLSLI 141 (178)
T ss_pred -eec-ccH--H----HhhcccC-----CHHH---HHHHHHHHHHhcCCCEEEEECCccc---CCHHHHHHHHHHH
Confidence 000 000 0 0014455 9999 999998 99999999999999999 9988876664443
No 155
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.8e-23 Score=167.82 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=95.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccccCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-- 67 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++.........+..+... +......
T Consensus 24 vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (510)
T PRK09700 24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYI 103 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhh
Confidence 5899999999999999999999999999999755 99999998875443221111101000 0000000
Q ss_pred -------eecC------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 68 -------NFGP------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 68 -------~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.++. ...+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgG~---~qrv~ia~al~~~p~lllLDEP 172 (510)
T PRK09700 104 GRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL---DEKVANL-----SISH---KQMLEIAKTLMLDAKVIIMDEP 172 (510)
T ss_pred ccccccccccccccCHHHHHHHHHHHHHHcCCCCCc---ccchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 0000 0011233456667775433 7788899 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
|++ ||+..+..+..++.
T Consensus 173 t~~---LD~~~~~~l~~~l~ 189 (510)
T PRK09700 173 TSS---LTNKEVDYLFLIMN 189 (510)
T ss_pred CCC---CCHHHHHHHHHHHH
Confidence 999 99988877654443
No 156
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.83 E-value=1.5e-23 Score=159.04 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=92.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-----CCeeeeeeeecCCC----CHHHHHHHHhccccc---cC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-----ETYALTSVPFNFYT----SSEMLQKVLEKPLEK---KA--- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-----g~i~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~--- 65 (163)
+||++.+||+++|+||||||||||+++|+|.++| |+|.++|.++.... ........+...... ..
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 102 (262)
T PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLS 102 (262)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCc
Confidence 5899999999999999999999999999999753 89999998875431 111111111000000 00
Q ss_pred ---Cceec----------------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecce
Q psy2657 66 ---GRNFG----------------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI 124 (163)
Q Consensus 66 ---~~~~~----------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~ 124 (163)
...++ ....+++..+++.+++.... ++.+.+| |+|+ +||+++ +++.+|
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p 171 (262)
T PRK09984 103 VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA---HQRVSTL-----SGGQ---QQRVAIARALMQQA 171 (262)
T ss_pred HHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH---hCCcccc-----CHHH---HHHHHHHHHHhcCC
Confidence 00000 00011223344555654322 5667777 9999 999998 899999
Q ss_pred EEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 125 MFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 125 ~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+++++|||++| ||+..++.+..++..
T Consensus 172 ~llllDEPt~~---LD~~~~~~l~~~l~~ 197 (262)
T PRK09984 172 KVILADEPIAS---LDPESARIVMDTLRD 197 (262)
T ss_pred CEEEecCcccc---CCHHHHHHHHHHHHH
Confidence 99999999999 999888776555444
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.83 E-value=8.8e-23 Score=154.05 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=90.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC-------C--H---HHHHHHHhccccc---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT-------S--S---EMLQKVLEKPLEK--- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~-------~--~---~~~~~~~~~~~~~--- 63 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++.... . . ...+..+......
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL 98 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCccc
Confidence 5899999999999999999999999999998765 99999998775321 0 0 1111111000000
Q ss_pred cC-Cc-----ee------cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEE
Q psy2657 64 KA-GR-----NF------GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMF 126 (163)
Q Consensus 64 ~~-~~-----~~------~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~ 126 (163)
.. .. .+ +.. ..+.+..+++.+++.... ++.+.++ |+|+ +|++++ +++.+|++
T Consensus 99 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~l 167 (252)
T TIGR03005 99 FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA---DHMPAQL-----SGGQ---QQRVAIARALAMRPKV 167 (252)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh---hcChhhc-----CHHH---HHHHHHHHHHHcCCCE
Confidence 00 00 00 000 011223445556664332 5667788 9999 999998 99999999
Q ss_pred EEEecCCCCcccCCchhhhceeEE
Q psy2657 127 VSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 127 i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
+++|||+++ ||+..+..+..+
T Consensus 168 lllDEP~~~---LD~~~~~~l~~~ 188 (252)
T TIGR03005 168 MLFDEVTSA---LDPELVGEVLNV 188 (252)
T ss_pred EEEeCCccc---CCHHHHHHHHHH
Confidence 999999999 998877655433
No 158
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.83 E-value=4.4e-23 Score=153.79 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=91.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC------CCCeeeeeeeecCCCCHHHHHHHHhccccc----cC-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP------PETYALTSVPFNFYTSSEMLQKVLEKPLEK----KA----- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~------~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----- 65 (163)
+||++++|++++|+||||||||||+++++|.++ .|+|.++|.++.... .....+...... ..
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~---~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhh---hhhheeEEEecCchhhcCcccCH
Confidence 589999999999999999999999999999864 489999998764320 000000000000 00
Q ss_pred -------CceecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 66 -------GRNFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 66 -------~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
...++. ...+++..+++.+++.....+.++++.++ |+|+ +||+++ +++.+|+++++|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~vllLDEPt 153 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQL-----SGGM---LQRVMIALALLLEPPFLIADEPT 153 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhc-----CHHH---HHHHHHHHHHhcCCCEEEEcCCc
Confidence 000000 00112334566666653212236677888 9999 999998 899999999999999
Q ss_pred CCcccCCchhhhceeEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~ 151 (163)
+| ||+..+..+..+.
T Consensus 154 ~~---LD~~~~~~l~~~l 168 (230)
T TIGR02770 154 TD---LDVVNQARVLKLL 168 (230)
T ss_pred cc---cCHHHHHHHHHHH
Confidence 99 9988866554433
No 159
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.7e-23 Score=154.36 Aligned_cols=137 Identities=14% Similarity=0.161 Sum_probs=91.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC---HHHHHHHHhccccc---------cCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS---SEMLQKVLEKPLEK---------KAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~ 66 (163)
+||++++ |+++|+||||||||||+++++|.++| |++.++|.++..... .......+...... ...
T Consensus 17 vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 17 IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 5899999 99999999999999999999999765 999999987643211 11111111100000 000
Q ss_pred ceecC------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 67 RNFGP------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 67 ~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
..+.. ...+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEPt~~--- 161 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLL---NRYPAQL-----SGGE---KQRVALARALAAQPELLLLDEPFSA--- 161 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHh---hcCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---
Confidence 00000 0011233456666664322 5667788 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..++.+..++.
T Consensus 162 LD~~~~~~l~~~l~ 175 (214)
T cd03297 162 LDRALRLQLLPELK 175 (214)
T ss_pred CCHHHHHHHHHHHH
Confidence 99888766654443
No 160
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.83 E-value=4.7e-23 Score=156.11 Aligned_cols=138 Identities=16% Similarity=0.220 Sum_probs=91.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc----cCCce-----e
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK----KAGRN-----F 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~ 69 (163)
+||++++|++++|+||||||||||+++|+|.++| |++.++|.+++....... ...+...... ....+ +
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~~tv~e~l~~ 99 (258)
T PRK13548 21 VSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL-ARRRAVLPQHSSLSFPFTVEEVVAM 99 (258)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHh-hhheEEEccCCcCCCCCCHHHHHHh
Confidence 5899999999999999999999999999999765 999999987654322211 1111000000 00000 0
Q ss_pred cCC--------CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eee------cceEEEEEecCC
Q psy2657 70 GPP--------GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDI------HNIMFVSAMNPT 133 (163)
Q Consensus 70 ~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~------~~~~~i~~deP~ 133 (163)
... ..+.+..+++.+++.... ++.+.+| |+|+ +||+++ +++ .+|+++++|||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGe---~qrv~la~al~~~~~~~~~p~lllLDEPt 168 (258)
T PRK13548 100 GRAPHGLSRAEDDALVAAALAQVDLAHLA---GRDYPQL-----SGGE---QQRVQLARVLAQLWEPDGPPRWLLLDEPT 168 (258)
T ss_pred hhcccCCCcHHHHHHHHHHHHHcCCHhHh---cCCcccC-----CHHH---HHHHHHHHHHhcccccCCCCCEEEEeCCc
Confidence 000 001123345555664322 6667788 9999 999998 777 489999999999
Q ss_pred CCcccCCchhhhceeEEEEc
Q psy2657 134 SGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l~ 153 (163)
++ ||+..+..+..++.+
T Consensus 169 ~~---LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 169 SA---LDLAHQHHVLRLARQ 185 (258)
T ss_pred cc---CCHHHHHHHHHHHHH
Confidence 99 999887766554443
No 161
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.83 E-value=7.1e-23 Score=154.75 Aligned_cols=137 Identities=17% Similarity=0.259 Sum_probs=91.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC------CCeeeeeeeecCCCCHHHHHHHHhccccc----cCC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP------ETYALTSVPFNFYTSSEMLQKVLEKPLEK----KAG---- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~------g~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---- 66 (163)
+||.+.+||+++|+||||||||||+++++|.++| |+|.++|.+++.... ....+...... ...
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~---~~~~i~~v~q~~~~~~~~~~~~ 98 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL---RGRKIATIMQNPRSAFNPLHTM 98 (254)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc---ccceEEEEecCCccccCccccH
Confidence 5899999999999999999999999999999754 999999887642110 00000000000 000
Q ss_pred --------ceecCC-CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 67 --------RNFGPP-GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 67 --------~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
..++.. ..+++..+++.+++.......++.+.++ |+|+ +|++++ +++.+|+++++|||+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~lLlLDEPt~~ 170 (254)
T PRK10418 99 HTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEM-----SGGM---LQRMMIALALLCEAPFIIADEPTTD 170 (254)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCccc-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 000110 1122334566667654321235667788 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEE
Q psy2657 136 SFTIEPRLQRHFYVFA 151 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~ 151 (163)
||+..++.+..+.
T Consensus 171 ---LD~~~~~~l~~~L 183 (254)
T PRK10418 171 ---LDVVAQARILDLL 183 (254)
T ss_pred ---cCHHHHHHHHHHH
Confidence 9988776654443
No 162
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.2e-23 Score=156.70 Aligned_cols=138 Identities=21% Similarity=0.255 Sum_probs=91.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC------c--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG------R-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~-- 67 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++....... ....+...... ... .
T Consensus 21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~~tv~~~i~~ 99 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ-LARRLALLPQHHLTPEGITVRELVAY 99 (255)
T ss_pred eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHH-HhhheEEecccCCCCCCccHHHHHHh
Confidence 5899999999999999999999999999998765 99999988764332111 11111100000 000 0
Q ss_pred -------eecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 68 -------NFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 68 -------~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
.++. ...+++...++.+++... .++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEP~~~ 168 (255)
T PRK11231 100 GRSPWLSLWGRLSAEDNARVNQAMEQTRINHL---ADRRLTDL-----SGGQ---RQRAFLAMVLAQDTPVVLLDEPTTY 168 (255)
T ss_pred ccchhhhhccCCCHHHHHHHHHHHHHcCCHHH---HcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc
Confidence 0000 001112233444555332 25667777 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEEEc
Q psy2657 136 SFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++..
T Consensus 169 ---LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 169 ---LDINHQVELMRLMRE 183 (255)
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 999888776554433
No 163
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-23 Score=157.09 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=90.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 69 (163)
+||.+.+||+++|+||||||||||+++++|.++| |++.++|.++.......... .+...... .....+
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv~~~~~~ 104 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR-RIGLLAQNATTPGDITVQELVAR 104 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh-heEEeeccCcCCCCCcHHHHHHh
Confidence 5899999999999999999999999999999765 99999998765432222111 11100000 000000
Q ss_pred c----------C--CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 70 G----------P--PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 70 ~----------~--~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
. . ...+++..+++.+++... .++.+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----S~Gq---~qrv~laral~~~p~llllDEPt~g 173 (265)
T PRK10253 105 GRYPHQPLFTRWRKEDEEAVTKAMQATGITHL---ADQSVDTL-----SGGQ---RQRAWIAMVLAQETAIMLLDEPTTW 173 (265)
T ss_pred CcccccccccCCCHHHHHHHHHHHHHcCCHHH---hcCCcccC-----ChHH---HHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 0 000112234445555432 26667778 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEE
Q psy2657 136 SFTIEPRLQRHFYVFA 151 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~ 151 (163)
||+..+..+..++
T Consensus 174 ---LD~~~~~~l~~~L 186 (265)
T PRK10253 174 ---LDISHQIDLLELL 186 (265)
T ss_pred ---CCHHHHHHHHHHH
Confidence 9988776654433
No 164
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.83 E-value=2.2e-23 Score=157.09 Aligned_cols=138 Identities=12% Similarity=0.152 Sum_probs=91.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhccccc---------cCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 70 (163)
+||++++|++++|+||||||||||+++++|.+++ |++.++|.++.......... .+...... .....+.
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~-~i~~v~q~~~~~~~~tv~~nl~~~ 93 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELAR-HRAYLSQQQTPPFAMPVFQYLTLH 93 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhh-heEEecccCccCCCccHHHHHHhc
Confidence 5899999999999999999999999999998654 99999998875433222111 11100000 0000000
Q ss_pred ----CCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeec-------ceEEEEEecCCC
Q psy2657 71 ----PPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIH-------NIMFVSAMNPTS 134 (163)
Q Consensus 71 ----~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~-------~~~~i~~deP~~ 134 (163)
... .+++..+++.+++.... ++++.++ |+|+ +||+++ +++. +|+++++|||++
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrv~la~al~~~~~~~~p~p~llllDEPt~ 162 (248)
T PRK03695 94 QPDKTRTEAVASALNEVAEALGLDDKL---GRSVNQL-----SGGE---WQRVRLAAVVLQVWPDINPAGQLLLLDEPMN 162 (248)
T ss_pred CccCCCcHHHHHHHHHHHHHcCCHhHh---cCCcccC-----CHHH---HHHHHHHHHHhccccccCCCCCEEEEcCCcc
Confidence 000 11223445555664322 5667777 9999 999998 6665 679999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
| ||+..++.+..+...
T Consensus 163 ~---LD~~~~~~l~~~L~~ 178 (248)
T PRK03695 163 S---LDVAQQAALDRLLSE 178 (248)
T ss_pred c---CCHHHHHHHHHHHHH
Confidence 9 999888776655444
No 165
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.83 E-value=2.1e-22 Score=149.71 Aligned_cols=134 Identities=15% Similarity=0.215 Sum_probs=88.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC---C--CCeeeeeeeecCCCCHHHHHHHHhcc---------ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP---P--ETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~--g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 66 (163)
+||++++||+++|+||||||||||+++++|.++ | |++.++|.++... ..+..+... +.....
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~----~~~~~i~~~~q~~~~~~~~tv~en 101 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD----QFQKCVAYVRQDDILLPGLTVRET 101 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChH----HhcccEEEeCCCCccCcCCcHHHH
Confidence 589999999999999999999999999999876 4 8999988765310 000000000 000000
Q ss_pred -----ceecCC--C----CceEEE-EEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 67 -----RNFGPP--G----NKTMIY-FVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 67 -----~~~~~~--~----~~~~~~-~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
...... . .+.... .++.+++.... ++.+.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~illlDEP 170 (226)
T cd03234 102 LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG---GNLVKGI-----SGGE---RRRVSIAVQLLWDPKVLILDEP 170 (226)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhh---cccccCc-----CHHH---HHHHHHHHHHHhCCCEEEEeCC
Confidence 000000 0 001112 45555554322 5567778 9999 999988 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
++| ||+..+..|..++.
T Consensus 171 ~~g---LD~~~~~~~~~~l~ 187 (226)
T cd03234 171 TSG---LDSFTALNLVSTLS 187 (226)
T ss_pred CcC---CCHHHHHHHHHHHH
Confidence 999 99888777655443
No 166
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=5.5e-23 Score=152.15 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=86.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecC-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGP------- 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 71 (163)
+||++++|++++|+||||||||||+++++|..+| |++.++|.++....... ....+....... ..+..
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~--~~~~~tv~e~l~ 99 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPAD-LRRNIGYVPQDV--TLFYGTLRDNIT 99 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHH-HHhhEEEeCCCC--ccccchHHHHhh
Confidence 5789999999999999999999999999999755 99999998764332221 111111000000 00000
Q ss_pred -----CCCceEEEEEecCCCCCCc-C-------CCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 72 -----PGNKTMIYFVDDMNMPEVD-A-------YGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 72 -----~~~~~~~~~l~~~~l~~~~-~-------~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
...+.+...++.+++.... . .....+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~L-----SgG~---~qrl~la~al~~~p~llllDEPt~~- 170 (220)
T cd03245 100 LGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGL-----SGGQ---RQAVALARALLNDPPILLLDEPTSA- 170 (220)
T ss_pred cCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc-
Confidence 0000111122233332111 0 001123456 9999 999998 88999999999999999
Q ss_pred ccCCchhhhceeEEEEc
Q psy2657 137 FTIEPRLQRHFYVFALR 153 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..+..+
T Consensus 171 --LD~~~~~~l~~~l~~ 185 (220)
T cd03245 171 --MDMNSEERLKERLRQ 185 (220)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 998887766554444
No 167
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.7e-22 Score=152.29 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=92.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCCHHHHHHHHhc---------ccccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTSSEMLQKVLEK---------PLEKK 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 64 (163)
+||++++||+++|+||||||||||++++.|.++ .|+|.++|.++....... ....+.. .+...
T Consensus 22 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~~~~~~tv~ 100 (250)
T PRK14247 22 VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE-LRRRVQMVFQIPNPIPNLSIF 100 (250)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH-HhccEEEEeccCccCCCCcHH
Confidence 589999999999999999999999999999864 499999998775432211 1111100 00000
Q ss_pred CCceec----C---C---CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 65 AGRNFG----P---P---GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 65 ~~~~~~----~---~---~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
....+. . . ..+.+...++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++||
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgG~---~qrv~laral~~~p~lllLDE 172 (250)
T PRK14247 101 ENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL-----SGGQ---QQRLCIARALAFQPEVLLADE 172 (250)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcC
Confidence 000000 0 0 01122344555666321 11236678888 9999 999998 8999999999999
Q ss_pred CCCCcccCCchhhhceeEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~ 151 (163)
|+++ ||+..+..+..++
T Consensus 173 P~~~---LD~~~~~~l~~~l 189 (250)
T PRK14247 173 PTAN---LDPENTAKIESLF 189 (250)
T ss_pred CCcc---CCHHHHHHHHHHH
Confidence 9999 9988776664443
No 168
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.83 E-value=5.3e-23 Score=155.59 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=93.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-- 67 (163)
+||.+++||+++|+||||||||||+++|+|.++| |++.++|.++.........+. +...... ....
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~-i~~~~q~~~~~~~~tv~e~l~~ 98 (256)
T TIGR03873 20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR-VALVEQDSDTAVPLTVRDVVAL 98 (256)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh-eEEecccCccCCCCCHHHHHHh
Confidence 5899999999999999999999999999999765 999999988754332221111 1100000 0000
Q ss_pred -------eecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 68 -------NFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 68 -------~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
.+... ..+++..+++.+++... .++.+.++ |+|+ +|++++ +++.+|+++++|||++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----S~G~---~qrl~la~al~~~p~llllDEPt~~ 167 (256)
T TIGR03873 99 GRIPHRSLWAGDSPHDAAVVDRALARTELSHL---ADRDMSTL-----SGGE---RQRVHVARALAQEPKLLLLDEPTNH 167 (256)
T ss_pred cchhhhhhccCCCHHHHHHHHHHHHHcCcHhh---hcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCcccc
Confidence 00000 00122334555565432 25667777 9999 999998 99999999999999999
Q ss_pred cccCCchhhhceeEEEEc
Q psy2657 136 SFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..++..
T Consensus 168 ---LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 168 ---LDVRAQLETLALVRE 182 (256)
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 998888776554443
No 169
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5e-23 Score=154.06 Aligned_cols=136 Identities=15% Similarity=0.240 Sum_probs=87.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecC-CCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGP-PGN--- 74 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 74 (163)
+||.+++||+++|+||||||||||+++++|.++| |++.++|.++............+...... ...+.. ...
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~--~~~~~~~tv~~~l 101 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEG--RRVFSRMTVEENL 101 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccC--cccCCCCcHHHHH
Confidence 5899999999999999999999999999999765 99999998875543222111111100000 001100 000
Q ss_pred -------------ceEEEEEecC-CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 75 -------------KTMIYFVDDM-NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 75 -------------~~~~~~l~~~-~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+.+..+++.+ ++... .+.++.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~---~~~~~~~L-----S~G~---~qrl~la~al~~~p~illlDEPt~~--- 167 (237)
T PRK11614 102 AMGGFFAERDQFQERIKWVYELFPRLHER---RIQRAGTM-----SGGE---QQMLAIGRALMSQPRLLLLDEPSLG--- 167 (237)
T ss_pred HHhhhccChhHHHHHHHHHHHHHHHHHHH---HhCchhhC-----CHHH---HHHHHHHHHHHhCCCEEEEcCcccc---
Confidence 0011112222 12111 13445566 9999 999998 89999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 168 LD~~~~~~l~~~l~ 181 (237)
T PRK11614 168 LAPIIIQQIFDTIE 181 (237)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988776655443
No 170
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-21 Score=138.96 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=95.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecCCCCHHHHHHHH--------hccccc-----cC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNFYTSSEMLQKVL--------EKPLEK-----KA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~ 65 (163)
+|+.+++|.+.+++||||||||||+..+..+++ .|+++++|.++...++....+..- ...+.. +.
T Consensus 20 isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FG 99 (252)
T COG4604 20 VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG 99 (252)
T ss_pred ceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcC
Confidence 578999999999999999999999999888864 499999999999988877665532 111211 11
Q ss_pred CceecC-----CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 66 GRNFGP-----PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 66 ~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
..-|.. ...+.+...++-+++.+.. +++..|| |||| |||.-+ .+.+|.+++++|||.++
T Consensus 100 RfPYSqGRlt~eD~~~I~~aieyl~L~~l~---dryLd~L-----SGGQ---rQRAfIAMVlaQdTdyvlLDEPLNN--- 165 (252)
T COG4604 100 RFPYSQGRLTKEDRRIINEAIEYLHLEDLS---DRYLDEL-----SGGQ---RQRAFIAMVLAQDTDYVLLDEPLNN--- 165 (252)
T ss_pred CCcccCCCCchHHHHHHHHHHHHhcccchH---HHhHHhc-----ccch---hhhhhhheeeeccCcEEEecCcccc---
Confidence 111111 1122344566777777776 7889999 9999 998655 88899999999999999
Q ss_pred CCch
Q psy2657 139 IEPR 142 (163)
Q Consensus 139 l~~~ 142 (163)
||..
T Consensus 166 LDmk 169 (252)
T COG4604 166 LDMK 169 (252)
T ss_pred cchH
Confidence 8854
No 171
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.4e-22 Score=155.88 Aligned_cols=137 Identities=20% Similarity=0.258 Sum_probs=91.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC----CCHHHHHHHHh----------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY----TSSEMLQKVLE---------------- 58 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~----~~~~~~~~~~~---------------- 58 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++... .........+.
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 109 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIE 109 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHH
Confidence 5799999999999999999999999999999765 9999998876421 01111111110
Q ss_pred ccccccCCceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 59 KPLEKKAGRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 59 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
..+.... ...+... .+++...++.++++. .+.++++.+| |+|+ +||+++ +++.+|+++++|||+
T Consensus 110 enl~~~~-~~~~~~~~~~~~~~~~ll~~~~L~~--~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~lLlLDEPt 178 (289)
T PRK13645 110 KDIAFGP-VNLGENKQEAYKKVPELLKLVQLPE--DYVKRSPFEL-----SGGQ---KRRVALAGIIAMDGNTLVLDEPT 178 (289)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCCh--hHhcCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCc
Confidence 0000000 0000000 012223456666632 1226678888 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~ 151 (163)
+| ||+..+..+..++
T Consensus 179 ~~---LD~~~~~~l~~~l 193 (289)
T PRK13645 179 GG---LDPKGEEDFINLF 193 (289)
T ss_pred cc---CCHHHHHHHHHHH
Confidence 99 9988877664443
No 172
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=6.8e-22 Score=147.55 Aligned_cols=135 Identities=17% Similarity=0.172 Sum_probs=86.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCce--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKT-- 76 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++....... ....+..... ....+.....+.
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q--~~~~~~~tv~enl~ 97 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAS-LRRQIGLVSQ--DVFLFNDTVAENIA 97 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHH-HHhhEEEeCC--CCeeccccHHHHhh
Confidence 5789999999999999999999999999999765 99999998765432222 1211110000 000110000000
Q ss_pred -------------------EEEEEecC--CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 77 -------------------MIYFVDDM--NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 77 -------------------~~~~l~~~--~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
+..+++.+ ++. ...+..+.++ |+|+ +|++++ +++.+|+++++|||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~L-----S~G~---~qrv~la~al~~~p~lllLDEP~ 166 (234)
T cd03251 98 YGRPGATREEVEEAARAANAHEFIMELPEGYD---TVIGERGVKL-----SGGQ---RQRIAIARALLKDPPILILDEAT 166 (234)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc---eeeccCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcc
Confidence 00011111 111 1123446666 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeEEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l 152 (163)
+| ||+..+..+..++.
T Consensus 167 ~~---LD~~~~~~l~~~l~ 182 (234)
T cd03251 167 SA---LDTESERLVQAALE 182 (234)
T ss_pred cc---CCHHHHHHHHHHHH
Confidence 99 99988776654443
No 173
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.7e-22 Score=164.81 Aligned_cols=139 Identities=11% Similarity=0.087 Sum_probs=95.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC----CCCeeeeeeeecCCCCHHHHHHHHhc---------cccccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP----PETYALTSVPFNFYTSSEMLQKVLEK---------PLEKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~----~g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 67 (163)
+||++++||+++|+||||||||||+|+++|.++ .|+|.++|.++............+.. .+......
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 103 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENI 103 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHh
Confidence 589999999999999999999999999999865 48999999887543322111110100 00000000
Q ss_pred eecC--------C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 68 NFGP--------P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 68 ~~~~--------~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
.+.. . ..+++..+++.+++.... ++++.+| |+|| |||+++ +++.+|+++++||||+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---kqrv~la~al~~~p~lllLDEPt~ 172 (506)
T PRK13549 104 FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP---ATPVGNL-----GLGQ---QQLVEIAKALNKQARLLILDEPTA 172 (506)
T ss_pred hhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc---ccchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCC
Confidence 0000 0 011234556677775433 7778899 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
+ ||+..+..+..++.+
T Consensus 173 ~---LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 173 S---LTESETAVLLDIIRD 188 (506)
T ss_pred C---CCHHHHHHHHHHHHH
Confidence 9 999888776544433
No 174
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.83 E-value=1.1e-22 Score=153.98 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=92.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC----------C--HHHHHHHHhc-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT----------S--SEMLQKVLEK------- 59 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~----------~--~~~~~~~~~~------- 59 (163)
+||.+++||+++|+||||||||||+++++|.++| |++.++|.++.... . ....+..+..
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 103 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 103 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCccc
Confidence 5899999999999999999999999999999765 99999998764311 0 1111111110
Q ss_pred --cccccCCcee------c---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEE
Q psy2657 60 --PLEKKAGRNF------G---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMF 126 (163)
Q Consensus 60 --~~~~~~~~~~------~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~ 126 (163)
.+.......+ . ....+++..+++.+++.... .+..+.++ |+|+ +||+++ +++.+|++
T Consensus 104 ~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~L-----S~G~---~qrv~laral~~~p~l 173 (257)
T PRK10619 104 WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA--QGKYPVHL-----SGGQ---QQRVSIARALAMEPEV 173 (257)
T ss_pred CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh--hhCCcccC-----CHHH---HHHHHHHHHHhcCCCE
Confidence 0000000000 0 00112234556677775431 14567788 9999 999998 99999999
Q ss_pred EEEecCCCCcccCCchhhhceeEE
Q psy2657 127 VSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 127 i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
+++|||++| ||+..+..+..+
T Consensus 174 lllDEPt~~---LD~~~~~~l~~~ 194 (257)
T PRK10619 174 LLFDEPTSA---LDPELVGEVLRI 194 (257)
T ss_pred EEEeCCccc---CCHHHHHHHHHH
Confidence 999999999 998877665443
No 175
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.1e-22 Score=155.18 Aligned_cols=139 Identities=13% Similarity=0.152 Sum_probs=90.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH----HHHH---------HHhccccc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE----MLQK---------VLEKPLEK-- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~----~~~~---------~~~~~~~~-- 63 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++....... ..+. .+......
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~ 105 (272)
T PRK15056 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGR 105 (272)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccc
Confidence 5899999999999999999999999999999765 99999987753110000 0000 00000000
Q ss_pred cC-CceecCC-C--CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 64 KA-GRNFGPP-G--NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 64 ~~-~~~~~~~-~--~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.. ...+... . .+++..+++.+++.... ++++.++ |+|+ +||+++ +++.+|+++++|||+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgG~---~qrv~laraL~~~p~llllDEPt~~-- 172 (272)
T PRK15056 106 YGHMGWLRRAKKRDRQIVTAALARVDMVEFR---HRQIGEL-----SGGQ---KKRVFLARAIAQQGQVILLDEPFTG-- 172 (272)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCChhHh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcc--
Confidence 00 0000000 0 11122344555554322 5667777 9999 999998 89999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 173 -LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 173 -VDVKTEARIISLLRE 187 (272)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999888777554433
No 176
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=9e-22 Score=141.10 Aligned_cols=89 Identities=11% Similarity=0.160 Sum_probs=71.9
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEE
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYF 80 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (163)
+.+++||+++|+||||||||||+|+++|.++| |+|.+++.++.... .
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-----------------------q-------- 68 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP-----------------------Q-------- 68 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEc-----------------------c--------
Confidence 67899999999999999999999999999765 88888875421110 0
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
. . . + |+|+ +||+++ +++.+|+++++|||+++ ||+..+..+..
T Consensus 69 --~------~---~-----L-----SgGq---~qrv~laral~~~p~lllLDEPts~---LD~~~~~~l~~ 112 (177)
T cd03222 69 --Y------I---D-----L-----SGGE---LQRVAIAAALLRNATFYLFDEPSAY---LDIEQRLNAAR 112 (177)
T ss_pred --c------C---C-----C-----CHHH---HHHHHHHHHHhcCCCEEEEECCccc---CCHHHHHHHHH
Confidence 0 0 0 4 9999 999998 89999999999999999 99887665543
No 177
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.1e-22 Score=155.01 Aligned_cols=137 Identities=17% Similarity=0.251 Sum_probs=91.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc----------cccCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL----------EKKAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 68 (163)
+||++++||+++|+||||||||||+++++|..+| |+|.++|.++........ ...+.... .......
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~-~~~i~~v~q~~~~~~~~~tv~enl~ 106 (271)
T PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI-RKKIGIIFQNPDNQFIGATVEDDIA 106 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH-hcceEEEEeCHHHhcCcccHHHHHH
Confidence 5799999999999999999999999999999765 999999988753322111 11110000 0000000
Q ss_pred ec-----CCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 FG-----PPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~~-----~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+. ... .+.+..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~lllLDEP~~g--- 172 (271)
T PRK13632 107 FGLENKKVPPKKMKDIIDDLAKKVGMEDYL---DKEPQNL-----SGGQ---KQRVAIASVLALNPEIIIFDESTSM--- 172 (271)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCHHHh---hCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 00 000 01123445556664322 5667777 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+...+.+..+..
T Consensus 173 LD~~~~~~l~~~l~ 186 (271)
T PRK13632 173 LDPKGKREIKKIMV 186 (271)
T ss_pred CCHHHHHHHHHHHH
Confidence 99887766544433
No 178
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.82 E-value=1.6e-22 Score=152.61 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=90.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee-----ecCCCCHHHH---HHHHhccccccC-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP-----FNFYTSSEML---QKVLEKPLEKKA----- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~----- 65 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.+ +......... ...+........
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 101 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRM 101 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCc
Confidence 5899999999999999999999999999999765 999998865 4332211111 111110000000
Q ss_pred -C----ce------ecC----CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEE
Q psy2657 66 -G----RN------FGP----PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVS 128 (163)
Q Consensus 66 -~----~~------~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~ 128 (163)
. .+ +.. ...+.+..+++.+++.. .+.++.+.+| |+|+ +||+++ +++.+|++++
T Consensus 102 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~L-----SgG~---~qrv~laral~~~p~vll 171 (253)
T TIGR02323 102 RVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP--TRIDDLPRAF-----SGGM---QQRLQIARNLVTRPRLVF 171 (253)
T ss_pred cccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh--hhhhcCchhc-----CHHH---HHHHHHHHHHhcCCCEEE
Confidence 0 00 000 00112334456666642 1225667888 9999 999998 9999999999
Q ss_pred EecCCCCcccCCchhhhceeEEE
Q psy2657 129 AMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 129 ~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+|||+++ ||+..+..+..++
T Consensus 172 lDEP~~~---LD~~~~~~l~~~l 191 (253)
T TIGR02323 172 MDEPTGG---LDVSVQARLLDLL 191 (253)
T ss_pred EcCCCcc---CCHHHHHHHHHHH
Confidence 9999999 9988776664433
No 179
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=6.1e-23 Score=154.90 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=87.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eec--CCCCHH--HHHHHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFN--FYTSSE--MLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
+||++++||+++|+||||||||||+++|+|.++| |+|.+++. .+. .+.... .....+...... .....
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~-----~~~~~ 97 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRL-----RPGTK 97 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhc-----ccccc
Confidence 5799999999999999999999999999999765 88877652 121 111100 000000000000 00001
Q ss_pred CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 74 NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 74 ~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
.+++..+++.+++.+.. ++++.+| |+|+ +||+++ +++.+|+++++|||++| ||+..+..+..+
T Consensus 98 ~~~~~~~l~~~gl~~~~---~~~~~~L-----SgGq---~qrv~laral~~~p~lllLDEPt~~---LD~~~~~~l~~~ 162 (251)
T PRK09544 98 KEDILPALKRVQAGHLI---DAPMQKL-----SGGE---TQRVLLARALLNRPQLLVLDEPTQG---VDVNGQVALYDL 162 (251)
T ss_pred HHHHHHHHHHcCChHHH---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcC---CCHHHHHHHHHH
Confidence 12233455666665433 6678888 9999 999998 89999999999999999 998877665443
No 180
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.82 E-value=4.7e-23 Score=152.07 Aligned_cols=129 Identities=10% Similarity=0.073 Sum_probs=81.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCee-eeeeeecCCC-----CHHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYA-LTSVPFNFYT-----SSEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||.+++|++++|+||||||||||+++++|.++| |++. +++....... ........+..... .++..
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~-----~~~~~ 80 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMAS-----LYGLD 80 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHH-----HcCCC
Confidence 6899999999999999999999999999999765 8876 5554331100 00001111110000 01110
Q ss_pred CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
..+......+..+++.. .++++.++ |+|+ +||+++ +++.+|+++++|||+++ +|+...+.+.
T Consensus 81 ~~~~~~~~~~~~~l~~~---~~~~~~~l-----S~G~---~qrv~la~al~~~p~llllDEP~~~---lD~~~~~~~~ 144 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQC---YTDRVSEY-----SVTM---KTHLAFAINLLLPCRLYIADGKLYT---GDNATQLRMQ 144 (213)
T ss_pred HHHHHHHHHHHhChhHH---hhchHhhc-----CHHH---HHHHHHHHHHhcCCCEEEECCCCcc---CCHHHHHHHH
Confidence 00000011122334322 26678888 9999 999988 99999999999999999 8887655443
No 181
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.1e-22 Score=163.29 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=93.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc------------cccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL------------EKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 66 (163)
+||++++|++++|+||||||||||+|+++|.++| |+|.++|.++............+.... .....
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 361 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQN 361 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHH
Confidence 5899999999999999999999999999999765 999999987753322111111010000 00000
Q ss_pred ceecC---------------C--CCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEE
Q psy2657 67 RNFGP---------------P--GNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMF 126 (163)
Q Consensus 67 ~~~~~---------------~--~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~ 126 (163)
..+.. . ..+++..+++.+++. +.. ++++.+| |+|| |||+++ +++.+|++
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~L-----SgGq---~qrv~lAral~~~p~l 430 (510)
T PRK09700 362 MAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV---NQNITEL-----SGGN---QQKVLISKWLCCCPEV 430 (510)
T ss_pred hccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc---cCccccC-----ChHH---HHHHHHHHHHhcCCCE
Confidence 00000 0 001123455667774 332 7788999 9999 999998 88999999
Q ss_pred EEEecCCCCcccCCchhhhceeEEE
Q psy2657 127 VSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 127 i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+++||||++ ||+..+..+..++
T Consensus 431 LlLDEPt~~---LD~~~~~~l~~~l 452 (510)
T PRK09700 431 IIFDEPTRG---IDVGAKAEIYKVM 452 (510)
T ss_pred EEECCCCCC---cCHHHHHHHHHHH
Confidence 999999999 9988876665443
No 182
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.82 E-value=1.9e-22 Score=149.41 Aligned_cols=137 Identities=17% Similarity=0.239 Sum_probs=93.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccc---------cccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPL---------EKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~ 67 (163)
+||.+.+|++++|+||||||||||+++++|.++| |+|+++|.++....... ..+..+.... ......
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~ 103 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNV 103 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHH
Confidence 5889999999999999999999999999999765 99999998875433211 1111111000 000000
Q ss_pred e----ecCC--C---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 68 N----FGPP--G---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 68 ~----~~~~--~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
. +... . .+.+..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~l-----S~G~---~qrv~laral~~~p~illlDEP~~~- 171 (220)
T TIGR02982 104 QMALELQPNLSYQEARERARAMLEAVGLGDHL---DYYPHNL-----SGGQ---KQRVAIARALVHRPKLVLADEPTAA- 171 (220)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCChhhh---hcChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCc-
Confidence 0 0000 0 11234556667774333 6678888 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEE
Q psy2657 137 FTIEPRLQRHFYVFA 151 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~ 151 (163)
||+..+..+..+.
T Consensus 172 --LD~~~~~~l~~~l 184 (220)
T TIGR02982 172 --LDSKSGRDVVELM 184 (220)
T ss_pred --CCHHHHHHHHHHH
Confidence 9988876654443
No 183
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.1e-22 Score=155.58 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=93.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc----------cCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK----------KAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 68 (163)
+||++.+||+++|+|+||||||||+++++|.++| |+|.++|.++....... ....+...... .....
T Consensus 26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~~~~~~~tv~eni~ 104 (277)
T PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWN-LRRKIGMVFQNPDNQFVGATVEDDVA 104 (277)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHH-HhcceEEEEECHHHhhccCCHHHHHH
Confidence 5899999999999999999999999999999766 99999998875432211 11111100000 00000
Q ss_pred e-----cCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 69 F-----GPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 69 ~-----~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+ +... .+++..+++.+++... .++++.++ |+|+ +|++++ +++.+|+++++|||+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----S~G~---~qrv~lAraL~~~p~llllDEPt~~--- 170 (277)
T PRK13642 105 FGMENQGIPREEMIKRVDEALLAVNMLDF---KTREPARL-----SGGQ---KQRVAVAGIIALRPEIIILDESTSM--- 170 (277)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHCCCHhH---hhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---
Confidence 0 0000 1122344555666433 26677888 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..++.+..++.
T Consensus 171 LD~~~~~~l~~~l~ 184 (277)
T PRK13642 171 LDPTGRQEIMRVIH 184 (277)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988877755443
No 184
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1e-21 Score=140.56 Aligned_cols=117 Identities=22% Similarity=0.383 Sum_probs=82.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++.... ...+ +.+.
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~--------------------~~i~ 76 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EEVK--------------------RRIG 76 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--Hhhh--------------------ccEE
Confidence 5799999999999999999999999999998755 99999998764321 1000 0111
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
...++..+.. ...+.+.+. +|+|+ +||+++ +++.+|+++++|||+++ ||+..+..+..+..
T Consensus 77 ~~~q~~~~~~-----~~tv~~~~~--LS~G~---~qrv~laral~~~p~illlDEPt~~---LD~~~~~~l~~~l~ 139 (173)
T cd03230 77 YLPEEPSLYE-----NLTVRENLK--LSGGM---KQRLALAQALLHDPELLILDEPTSG---LDPESRREFWELLR 139 (173)
T ss_pred EEecCCcccc-----CCcHHHHhh--cCHHH---HHHHHHHHHHHcCCCEEEEeCCccC---CCHHHHHHHHHHHH
Confidence 1111111110 111223222 59999 999988 99999999999999999 99887766544433
No 185
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=1.8e-22 Score=141.38 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=101.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CCCCeeeeeeeecCCCCHHHHHH---HHhc---------cccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PPETYALTSVPFNFYTSSEMLQK---VLEK---------PLEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~g~i~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~~ 66 (163)
++|.|++||.++|+||||||||||+-.+.|+- ..|+|.+.|.+............ .+.- ++....
T Consensus 29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlE- 107 (228)
T COG4181 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALE- 107 (228)
T ss_pred ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhh-
Confidence 57899999999999999999999999999984 44999999988876654332211 1100 011000
Q ss_pred cee------c---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 67 RNF------G---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 67 ~~~------~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
++. + ......+...++.+++...- +.+|.+| |+|+ +||+++ +++..|+++++||||++
T Consensus 108 NV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl---~HyP~qL-----SGGE---QQRVAiARAfa~~P~vLfADEPTGN 176 (228)
T COG4181 108 NVALPLELRGESSADSRAGAKALLEAVGLGKRL---THYPAQL-----SGGE---QQRVALARAFAGRPDVLFADEPTGN 176 (228)
T ss_pred hccchhhhcCCccccHHHHHHHHHHHhCccccc---ccCcccc-----CchH---HHHHHHHHHhcCCCCEEeccCCCCC
Confidence 000 0 01112244567778887665 7889999 9999 999999 99999999999999999
Q ss_pred cccCCchhhhceeEEEEcCCcccc
Q psy2657 136 SFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
||...-+.+..+.+..+.+..
T Consensus 177 ---LD~~Tg~~iaDLlF~lnre~G 197 (228)
T COG4181 177 ---LDRATGDKIADLLFALNRERG 197 (228)
T ss_pred ---cchhHHHHHHHHHHHHhhhcC
Confidence 998776666555554444433
No 186
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.82 E-value=2.4e-22 Score=152.21 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=91.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee-----ecCCCCHHHH---HHHHhccccccC----C
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP-----FNFYTSSEML---QKVLEKPLEKKA----G 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~----~ 66 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.+ +......... ...+........ .
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRM 104 (258)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCc
Confidence 5899999999999999999999999999999765 999999987 5433221111 000100000000 0
Q ss_pred ------ce------ecCC----CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEE
Q psy2657 67 ------RN------FGPP----GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVS 128 (163)
Q Consensus 67 ------~~------~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~ 128 (163)
.+ ++.. ..+++..+++.+++.. .+.++.+.++ |+|+ +||+++ +++.+|++++
T Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~L-----S~Gq---~qrl~laral~~~p~lll 174 (258)
T PRK11701 105 QVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA--ARIDDLPTTF-----SGGM---QQRLQIARNLVTHPRLVF 174 (258)
T ss_pred cccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh--hHHhCCCccC-----CHHH---HHHHHHHHHHhcCCCEEE
Confidence 00 0000 0112234455566632 1125667788 9999 999998 8999999999
Q ss_pred EecCCCCcccCCchhhhceeEEE
Q psy2657 129 AMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 129 ~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+|||+++ ||+...+.+..++
T Consensus 175 lDEPt~~---LD~~~~~~l~~~l 194 (258)
T PRK11701 175 MDEPTGG---LDVSVQARLLDLL 194 (258)
T ss_pred EcCCccc---CCHHHHHHHHHHH
Confidence 9999999 9988876665443
No 187
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.82 E-value=1.6e-22 Score=150.23 Aligned_cols=139 Identities=14% Similarity=0.192 Sum_probs=89.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHH-------------HHhccccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQK-------------VLEKPLEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 65 (163)
+||.+++|++++|+||||||||||+++++|.++| |++.++|.++........... .+..++....
T Consensus 33 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~ 112 (226)
T cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGL 112 (226)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhcccc
Confidence 5789999999999999999999999999999765 999999877643221111000 0100110000
Q ss_pred Cce-ecC--C--CCceEEEEEecC--CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 66 GRN-FGP--P--GNKTMIYFVDDM--NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 66 ~~~-~~~--~--~~~~~~~~l~~~--~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
... ... . ....+..+++.+ ++... .+..+.+| |+|+ +||+++ +++.+|+++++|||+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~---~~~~~~~L-----SgG~---~qrv~laral~~~p~llllDEPt~~- 180 (226)
T cd03248 113 QSCSFECVKEAAQKAHAHSFISELASGYDTE---VGEKGSQL-----SGGQ---KQRVAIARALIRNPQVLILDEATSA- 180 (226)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccch---hhcCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc-
Confidence 000 000 0 000111233334 33322 25557788 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEEc
Q psy2657 137 FTIEPRLQRHFYVFALR 153 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..+...
T Consensus 181 --LD~~~~~~l~~~l~~ 195 (226)
T cd03248 181 --LDAESEQQVQQALYD 195 (226)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 998887776554443
No 188
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.1e-22 Score=163.91 Aligned_cols=137 Identities=17% Similarity=0.221 Sum_probs=93.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 69 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++.........+..+.... .......+
T Consensus 17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 96 (491)
T PRK10982 17 VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWL 96 (491)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhc
Confidence 5899999999999999999999999999999765 999999988754332221111110000 00000000
Q ss_pred cC--------CC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 70 GP--------PG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 70 ~~--------~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
+. .. .+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---~qrv~lA~al~~~p~lllLDEPt~~- 164 (491)
T PRK10982 97 GRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP---RAKVATL-----SVSQ---MQMIEIAKAFSYNAKIVIMDEPTSS- 164 (491)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCc---cCchhhC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCCCC-
Confidence 00 00 01223345555664332 6778888 9999 999998 89999999999999999
Q ss_pred ccCCchhhhceeEEE
Q psy2657 137 FTIEPRLQRHFYVFA 151 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~ 151 (163)
||+..+..+..+.
T Consensus 165 --LD~~~~~~l~~~l 177 (491)
T PRK10982 165 --LTEKEVNHLFTII 177 (491)
T ss_pred --CCHHHHHHHHHHH
Confidence 9998887765443
No 189
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.7e-22 Score=150.33 Aligned_cols=139 Identities=17% Similarity=0.249 Sum_probs=85.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--------cCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------KAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 70 (163)
+||++.+|++++|+||||||||||+++++|.++| |++.++|.++....... ....+...... .....+.
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~tv~~~~~~~ 100 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKS-LRSMIGVVLQDTFLFSGTIMENIRLG 100 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHH-HhhhEEEecCCchhhhhHHHHHHhcc
Confidence 5799999999999999999999999999999765 99999998765432111 11111100000 0000000
Q ss_pred -CCCC-ceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PPGN-KTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~~~-~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.... ..+...++.+++.. .+...+..+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L-----S~G~---~~rv~la~al~~~p~llllDEP~~~--- 169 (229)
T cd03254 101 RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNL-----SQGE---RQLLAIARAMLRDPKILILDEATSN--- 169 (229)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc---
Confidence 0000 00111111111110 000112334566 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEE
Q psy2657 139 IEPRLQRHFYVFA 151 (163)
Q Consensus 139 l~~~~~~~~~~~~ 151 (163)
||+..+..+..++
T Consensus 170 LD~~~~~~l~~~l 182 (229)
T cd03254 170 IDTETEKLIQEAL 182 (229)
T ss_pred CCHHHHHHHHHHH
Confidence 9988776554443
No 190
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=4.6e-22 Score=145.63 Aligned_cols=130 Identities=14% Similarity=0.191 Sum_probs=86.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-----CCCeeeeeeeecCCCCHHHHHHHHhccccccCCceec-CCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-----PETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG-PPGN 74 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-----~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (163)
+||.+++||+++|+||||||||||+++++|.++ .|++.++|.++.... ......+...... ...+. ....
T Consensus 26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~~~~~~i~~~~q~--~~~~~~~tv~ 101 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--EKYPGEIIYVSEE--DVHFPTLTVR 101 (202)
T ss_pred EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--hhhcceEEEEecc--cccCCCCcHH
Confidence 578999999999999999999999999999976 399999998765321 1111111000000 00110 0000
Q ss_pred ceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 75 KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 75 ~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
+.+ .+... ...++.+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..++.+..++.
T Consensus 102 ~~l-------~~~~~-~~~~~~~~~L-----S~Ge---~qrl~laral~~~p~llllDEPt~~---LD~~~~~~~~~~l~ 162 (202)
T cd03233 102 ETL-------DFALR-CKGNEFVRGI-----SGGE---RKRVSIAEALVSRASVLCWDNSTRG---LDSSTALEILKCIR 162 (202)
T ss_pred HHH-------hhhhh-hccccchhhC-----CHHH---HHHHHHHHHHhhCCCEEEEcCCCcc---CCHHHHHHHHHHHH
Confidence 110 00000 0025567788 9999 999988 99999999999999999 99888777655444
Q ss_pred c
Q psy2657 153 R 153 (163)
Q Consensus 153 ~ 153 (163)
.
T Consensus 163 ~ 163 (202)
T cd03233 163 T 163 (202)
T ss_pred H
Confidence 3
No 191
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.82 E-value=5e-22 Score=167.25 Aligned_cols=138 Identities=21% Similarity=0.255 Sum_probs=88.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||++++||.++|+|+||||||||+|.++|.+.| |+|.+||.+.+..+.....+.+..-.-+ ...|.....+.+.
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~---~~Lf~gSI~eNi~ 568 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD---PFLFSGSIRENIA 568 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEccc---chhhcCcHHHHHh
Confidence 5899999999999999999999999999999877 9999999999887765555543111000 0111111000000
Q ss_pred EEEecCCCCCC-cCCCCCCHHHHHHHH--------------HhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 79 YFVDDMNMPEV-DAYGTVQPHTVIRQY--------------MDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 79 ~~l~~~~l~~~-~~~~~~~~~ellr~~--------------~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
..--+...++. +.....-.++++.+. +|+|| |||+++ +++.+|+++++||||++ ||+
T Consensus 569 l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ---rQrlalARaLl~~P~ILlLDEaTSa---LD~ 642 (709)
T COG2274 569 LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ---RQRLALARALLSKPKILLLDEATSA---LDP 642 (709)
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH---HHHHHHHHHhccCCCEEEEeCcccc---cCH
Confidence 00000000000 000011133444433 59999 999999 99999999999999999 998
Q ss_pred hhhhce
Q psy2657 142 RLQRHF 147 (163)
Q Consensus 142 ~~~~~~ 147 (163)
...+.+
T Consensus 643 ~sE~~I 648 (709)
T COG2274 643 ETEAII 648 (709)
T ss_pred hHHHHH
Confidence 776554
No 192
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.82 E-value=1.7e-22 Score=152.10 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=92.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccc--------ccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPL--------EKK 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~ 64 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++.... ........+.... ...
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIY 99 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHH
Confidence 589999999999999999999999999999863 588999998775321 1111111111000 000
Q ss_pred CCcee-----cC-C---CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGRNF-----GP-P---GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~~~-----~~-~---~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
....+ +. . ..+.+...++.+++... ....++++.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 100 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgG~---~qrv~laral~~~p~llllDEP 171 (247)
T TIGR00972 100 DNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGL-----SGGQ---QQRLCIARALAVEPEVLLLDEP 171 (247)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 00000 00 0 01123345556666411 01225667888 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+..+..+..++.
T Consensus 172 t~~---LD~~~~~~l~~~l~ 188 (247)
T TIGR00972 172 TSA---LDPIATGKIEELIQ 188 (247)
T ss_pred ccc---CCHHHHHHHHHHHH
Confidence 999 99888766644433
No 193
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.8e-23 Score=152.62 Aligned_cols=136 Identities=13% Similarity=0.183 Sum_probs=93.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--- 66 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.++....... ..+.... .....
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~i~~~~q~~~~~~~~t~~~nl~~ 95 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK---RPVNTVFQNYALFPHLTVFENIAF 95 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhh---cceEEEecccccCCCCcHHHHHHH
Confidence 5789999999999999999999999999999765 99999998765432111 0000000 00000
Q ss_pred --ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...+.. ..+++...++.+++.... +..+.++ |+|+ +|++++ +++.+|+++++|||++| |
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~l-----S~G~---~qrl~laral~~~p~llllDEP~~g---L 161 (232)
T cd03300 96 GLRLKKLPKAEIKERVAEALDLVQLEGYA---NRKPSQL-----SGGQ---QQRVAIARALVNEPKVLLLDEPLGA---L 161 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---C
Confidence 000000 011223445556664333 6678888 9999 999988 99999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
|+..+..|..+..+
T Consensus 162 D~~~~~~l~~~l~~ 175 (232)
T cd03300 162 DLKLRKDMQLELKR 175 (232)
T ss_pred CHHHHHHHHHHHHH
Confidence 99888877554443
No 194
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.82 E-value=3e-22 Score=149.84 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=86.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--------ccccCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--------LEKKAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 70 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++....... ....+... ........+.
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~tv~e~l~~~ 100 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW-LRSQIGLVSQEPVLFDGTIAENIRYG 100 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHH-HHhhEEEECCchhhhhhhHHHHhhcc
Confidence 5799999999999999999999999999999765 99999998764332211 11111000 0000000000
Q ss_pred CC--CCceEEEEEecCCC-------C-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PP--GNKTMIYFVDDMNM-------P-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~--~~~~~~~~l~~~~l-------~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.. ..+.....++..++ + ..+...+..+.+| |+|+ +|++++ +++.+|+++++|||++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~la~al~~~p~llllDEP~~g--- 169 (238)
T cd03249 101 KPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL-----SGGQ---KQRIAIARALLRNPKILLLDEATSA--- 169 (238)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc---
Confidence 00 00000000011111 0 0111124456677 9999 999998 89999999999999999
Q ss_pred CCchhhhceeEEEEc
Q psy2657 139 IEPRLQRHFYVFALR 153 (163)
Q Consensus 139 l~~~~~~~~~~~~l~ 153 (163)
||+..+..+..+..+
T Consensus 170 LD~~~~~~l~~~l~~ 184 (238)
T cd03249 170 LDAESEKLVQEALDR 184 (238)
T ss_pred CCHHHHHHHHHHHHH
Confidence 998887766554433
No 195
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.2e-22 Score=163.50 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=94.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc---------cccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK---------PLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 69 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.++|.++............+.. .+.......+
T Consensus 23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 102 (501)
T PRK11288 23 ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYL 102 (501)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHh
Confidence 5899999999999999999999999999999765 9999999877533221111110000 0000000000
Q ss_pred -------cC----CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 70 -------GP----PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 70 -------~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
+. ...+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---~qrv~laral~~~p~lllLDEPt~~- 170 (501)
T PRK11288 103 GQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP---DTPLKYL-----SIGQ---RQMVEIAKALARNARVIAFDEPTSS- 170 (501)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHcCCCCCc---CCchhhC-----CHHH---HHHHHHHHHHHhCCCEEEEcCCCCC-
Confidence 00 0011233456667775333 6778899 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEEc
Q psy2657 137 FTIEPRLQRHFYVFALR 153 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..+..+
T Consensus 171 --LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 171 --LSAREIEQLFRVIRE 185 (501)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 999887766544433
No 196
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.82 E-value=2.1e-22 Score=151.10 Aligned_cols=140 Identities=15% Similarity=0.055 Sum_probs=90.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--C--CCCeeeeeeeecCCCCHHHHHHHHh---ccccccCC-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--P--PETYALTSVPFNFYTSSEMLQKVLE---KPLEKKAG------- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~--~g~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------- 66 (163)
+||++++||+++|+||||||||||+++++|.+ + .|+|.++|.++............+. ........
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~ 98 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFL 98 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHH
Confidence 58999999999999999999999999999983 3 3999999987654332211111000 00000000
Q ss_pred ----ceec---C----CC---CceEEEEEecCCCCCCcCCCCCCHH-HHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 67 ----RNFG---P----PG---NKTMIYFVDDMNMPEVDAYGTVQPH-TVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 67 ----~~~~---~----~~---~~~~~~~l~~~~l~~~~~~~~~~~~-ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
.... . .. .+++...++.++++.. +.++++. ++ |+|+ +||+++ +++.+|+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~L-----S~G~---~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 99 RSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE--FLNRSVNEGF-----SGGE---KKRNEILQMALLEPKLAIL 168 (243)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh--hcccccccCc-----CHHH---HHHHHHHHHHhcCCCEEEe
Confidence 0000 0 00 0112234455566421 1144454 47 9999 999998 99999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEc
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
|||+++ ||+..+..+..++..
T Consensus 169 DEPt~~---LD~~~~~~l~~~l~~ 189 (243)
T TIGR01978 169 DEIDSG---LDIDALKIVAEGINR 189 (243)
T ss_pred cCCccc---CCHHHHHHHHHHHHH
Confidence 999999 998888776554443
No 197
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.82 E-value=1.5e-21 Score=138.83 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=74.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCHHHHHHHHhccccccCCceecCCCCceE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTM 77 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.+++. .+...... ...+..
T Consensus 20 i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~---------------~~~~~~------ 78 (166)
T cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQR---------------PYLPLG------ 78 (166)
T ss_pred CeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCC---------------Cccccc------
Confidence 5899999999999999999999999999999765 88877652 01000000 000000
Q ss_pred EEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 78 IYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 78 ~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
...+.+.+. .+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+...+.+.
T Consensus 79 -tv~~nl~~~--------~~~~L-----S~G~---~~rv~laral~~~p~~lllDEPt~~---LD~~~~~~l~ 131 (166)
T cd03223 79 -TLREQLIYP--------WDDVL-----SGGE---QQRLAFARLLLHKPKFVFLDEATSA---LDEESEDRLY 131 (166)
T ss_pred -cHHHHhhcc--------CCCCC-----CHHH---HHHHHHHHHHHcCCCEEEEECCccc---cCHHHHHHHH
Confidence 000000000 23456 9999 999998 99999999999999999 9988776553
No 198
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.9e-23 Score=171.85 Aligned_cols=142 Identities=15% Similarity=0.241 Sum_probs=95.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC--------C-CHHHHHHH----Hh----cc-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY--------T-SSEMLQKV----LE----KP- 60 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~--------~-~~~~~~~~----~~----~~- 60 (163)
+||++++||+++|+||||||||||+|+++|.++| |++.++|..+... . ........ +. .+
T Consensus 35 is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 114 (623)
T PRK10261 35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM 114 (623)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCch
Confidence 5899999999999999999999999999999765 8888887654210 0 11111000 00 00
Q ss_pred ------ccccCCcee------c---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecc
Q psy2657 61 ------LEKKAGRNF------G---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN 123 (163)
Q Consensus 61 ------~~~~~~~~~------~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~ 123 (163)
+.......+ + ....+++..+++.++++......++++.+| |+|| +||+++ +++.+
T Consensus 115 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L-----SgGq---~QRv~iA~AL~~~ 186 (623)
T PRK10261 115 TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL-----SGGM---RQRVMIAMALSCR 186 (623)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC-----CHHH---HHHHHHHHHHhCC
Confidence 000000000 0 001123445677888865322336789999 9999 999998 99999
Q ss_pred eEEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 124 IMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 124 ~~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
|+++++||||++ ||+..+..+..+...
T Consensus 187 P~lLllDEPt~~---LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 187 PAVLIADEPTTA---LDVTIQAQILQLIKV 213 (623)
T ss_pred CCEEEEeCCCCc---cCHHHHHHHHHHHHH
Confidence 999999999999 998886665544433
No 199
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.82 E-value=4.6e-22 Score=155.05 Aligned_cols=136 Identities=16% Similarity=0.270 Sum_probs=103.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-------CCeeeeeeeecCCCCHHHH-------HHHHhccccc---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-------ETYALTSVPFNFYTSSEML-------QKVLEKPLEK--- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-------g~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~--- 63 (163)
|||.+++||.++|+|+||||||..++.++++++. |++.++|.++-..+..... .+++.++|..
T Consensus 29 isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNP 108 (534)
T COG4172 29 ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNP 108 (534)
T ss_pred ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCc
Confidence 6899999999999999999999999999998742 7899988776444322211 1112222221
Q ss_pred -------------cCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEE
Q psy2657 64 -------------KAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVS 128 (163)
Q Consensus 64 -------------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~ 128 (163)
.+..+-+.....++...++.+++++.+...+.+|+|| |+|+ |||+.| |++.+|++++
T Consensus 109 l~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL-----SGGq---RQRVMIAMALan~P~lLI 180 (534)
T COG4172 109 LHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL-----SGGQ---RQRVMIAMALANEPDLLI 180 (534)
T ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc-----Ccch---hhHHHHHHHHcCCCCeEe
Confidence 1122233344557788999999999988889999999 9999 999987 9999999999
Q ss_pred EecCCCCcccCCchhhhce
Q psy2657 129 AMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 129 ~deP~~g~~~l~~~~~~~~ 147 (163)
+||||.. ||-..+.++
T Consensus 181 ADEPTTA---LDVtvQaQI 196 (534)
T COG4172 181 ADEPTTA---LDVTVQAQI 196 (534)
T ss_pred ecCCcch---hhhhhHHHH
Confidence 9999999 887766554
No 200
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=2.9e-22 Score=165.44 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=95.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCCHHHH--H-HHHhccccc----c--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTSSEML--Q-KVLEKPLEK----K-- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~~~~~--~-~~~~~~~~~----~-- 64 (163)
+||++.+||+++|+||||||||||+|+++|.++ .|++.++|.++......... . ..+...... .
T Consensus 28 isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 107 (529)
T PRK15134 28 VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNP 107 (529)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCc
Confidence 589999999999999999999999999999975 38999999887543322110 0 000000000 0
Q ss_pred ----CCce------e-cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEE
Q psy2657 65 ----AGRN------F-GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVS 128 (163)
Q Consensus 65 ----~~~~------~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~ 128 (163)
...+ . +.. ..+++...++.+++.....+.++++.+| |+|| +||+++ +++.+|++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~L-----SgGe---~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 108 LHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQL-----SGGE---RQRVMIAMALLTRPELLI 179 (529)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCccc-----CHHH---HHHHHHHHHHhcCCCEEE
Confidence 0000 0 001 1123445677777754221226678899 9999 999998 9999999999
Q ss_pred EecCCCCcccCCchhhhceeEEEE
Q psy2657 129 AMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 129 ~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
+||||++ ||+...+.+..++.
T Consensus 180 lDEPt~~---LD~~~~~~l~~~l~ 200 (529)
T PRK15134 180 ADEPTTA---LDVSVQAQILQLLR 200 (529)
T ss_pred EcCCCCc---cCHHHHHHHHHHHH
Confidence 9999999 99888766654433
No 201
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.82 E-value=1.4e-22 Score=150.37 Aligned_cols=140 Identities=17% Similarity=0.243 Sum_probs=90.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee--e--eecCCCCHHH--H-HHHHhc---cccccCC--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS--V--PFNFYTSSEM--L-QKVLEK---PLEKKAG-- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~--~--~~~~~~~~~~--~-~~~~~~---~~~~~~~-- 66 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.+++ . ++........ . ...+.. .......
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 106 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVS 106 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCcc
Confidence 5899999999999999999999999999999765 9998873 2 3322211110 0 100000 0000000
Q ss_pred ---------ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 67 ---------RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 67 ---------~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
...+.. ..+++..+++.+++... +.++++.++ |+|+ +|++++ +++.+|+++++|||
T Consensus 107 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----S~G~---~qrl~laral~~~p~llllDEP 176 (224)
T TIGR02324 107 ALEVVAEPLLERGVPREAARARARELLARLNIPER--LWHLPPATF-----SGGE---QQRVNIARGFIADYPILLLDEP 176 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh--hhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCC
Confidence 000100 01223345666666431 125668888 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEEEEc
Q psy2657 133 TSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+++ ||+...+.+..+...
T Consensus 177 t~~---LD~~~~~~l~~~l~~ 194 (224)
T TIGR02324 177 TAS---LDAANRQVVVELIAE 194 (224)
T ss_pred ccc---CCHHHHHHHHHHHHH
Confidence 999 998888776544433
No 202
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=2.1e-22 Score=150.68 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=86.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--------cCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------KAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 70 (163)
+||++.+||+++|+||||||||||+++++|.++| |++.++|.++...+... ....+...... .....+.
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~~~~~~~tv~~nl~~~ 99 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAW-LRRQVGVVLQENVLFNRSIRDNIALA 99 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHH-HhhcEEEEcCCchhccchHHHHhhcc
Confidence 5789999999999999999999999999999765 99999998765432211 11111100000 0000000
Q ss_pred CC-CC-ceEEEEEecCCCC--------CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PP-GN-KTMIYFVDDMNMP--------EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~-~~-~~~~~~l~~~~l~--------~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.. .. ......++..++. ..+...+.++.+| |+|+ +|++++ +++.+|+++++|||+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~L-----SgG~---~qrv~laral~~~p~llllDEP~~~--- 168 (237)
T cd03252 100 DPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL-----SGGQ---RQRIAIARALIHNPRILIFDEATSA--- 168 (237)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcC-----CHHH---HHHHHHHHHHhhCCCEEEEeCCccc---
Confidence 00 00 0000000001110 0011113455666 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..++.
T Consensus 169 LD~~~~~~l~~~l~ 182 (237)
T cd03252 169 LDYESEHAIMRNMH 182 (237)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988766654443
No 203
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.3e-22 Score=163.47 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=92.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHH------------hccccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVL------------EKPLEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 66 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.++|.++............+ ...+.....
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~ 351 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADN 351 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHH
Confidence 5899999999999999999999999999999765 99999988765322111111000 000000000
Q ss_pred ceec------------CC-C-CceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 67 RNFG------------PP-G-NKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 67 ~~~~------------~~-~-~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
..++ .. . .+.+..+++.+++. +. .++++.+| |+|| +||+++ +++.+|+++++
T Consensus 352 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~L-----SgGq---~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 352 INISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS---REQLIMNL-----SGGN---QQKAILGRWLSEDMKVILL 420 (501)
T ss_pred hccccchhhcccccccChHHHHHHHHHHHHhcCcccCC---ccCccccC-----CHHH---HHHHHHHHHHccCCCEEEE
Confidence 0000 00 0 11233456667773 22 27789999 9999 999998 88999999999
Q ss_pred ecCCCCcccCCchhhhceeEE
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~ 150 (163)
||||+| ||+..++.+..+
T Consensus 421 DEPt~~---LD~~~~~~l~~~ 438 (501)
T PRK11288 421 DEPTRG---IDVGAKHEIYNV 438 (501)
T ss_pred cCCCCC---CCHhHHHHHHHH
Confidence 999999 998888776544
No 204
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.82 E-value=1.3e-22 Score=161.19 Aligned_cols=134 Identities=13% Similarity=0.233 Sum_probs=96.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh---c------cccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE---K------PLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~ 69 (163)
|||++++||+.+|+|+||+|||||++++.|.+.| |+|.++|++.....+..-...-+. + .+....+.+.
T Consensus 23 V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiL 102 (501)
T COG3845 23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIIL 102 (501)
T ss_pred eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhh
Confidence 6899999999999999999999999999999776 999999999887776654432111 1 1111111111
Q ss_pred cCC-----------CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 70 GPP-----------GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 70 ~~~-----------~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
+.. ..+++..+.+..+++-.- +.++.++ |-|+ +||++| ++.++++++++||||+-
T Consensus 103 g~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp---~~~V~dL-----sVG~---qQRVEIlKaLyr~a~iLILDEPTaV- 170 (501)
T COG3845 103 GLEPSKGGLIDRRQARARIKELSERYGLPVDP---DAKVADL-----SVGE---QQRVEILKALYRGARLLILDEPTAV- 170 (501)
T ss_pred cCccccccccCHHHHHHHHHHHHHHhCCCCCc---cceeecC-----Ccch---hHHHHHHHHHhcCCCEEEEcCCccc-
Confidence 111 122333455555664333 5667777 9999 999999 99999999999999999
Q ss_pred ccCCchhhhcee
Q psy2657 137 FTIEPRLQRHFY 148 (163)
Q Consensus 137 ~~l~~~~~~~~~ 148 (163)
|+|.-...|.
T Consensus 171 --LTP~E~~~lf 180 (501)
T COG3845 171 --LTPQEADELF 180 (501)
T ss_pred --CCHHHHHHHH
Confidence 9988775553
No 205
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=5.4e-22 Score=142.13 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=82.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYF 80 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (163)
+||++.+|++++|+||||||||||+|++++ +.|++.+.+..- ... . ....|-.. ..+
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~--~~G~v~~~~~~~-~~~-----~----------~~~~~~~q-----~~~ 70 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY--ASGKARLISFLP-KFS-----R----------NKLIFIDQ-----LQF 70 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhh--cCCcEEECCccc-ccc-----c----------ccEEEEhH-----HHH
Confidence 589999999999999999999999998864 568887654311 100 0 00011000 235
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecc--eEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN--IMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~--~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
++.+++.... .++++.++ |+|+ +||+++ +++.+ |+++++|||+++ ||+...+.+..+.
T Consensus 71 l~~~~L~~~~--~~~~~~~L-----SgGq---~qrl~laral~~~~~p~llLlDEPt~~---LD~~~~~~l~~~l 132 (176)
T cd03238 71 LIDVGLGYLT--LGQKLSTL-----SGGE---LQRVKLASELFSEPPGTLFILDEPSTG---LHQQDINQLLEVI 132 (176)
T ss_pred HHHcCCCccc--cCCCcCcC-----CHHH---HHHHHHHHHHhhCCCCCEEEEeCCccc---CCHHHHHHHHHHH
Confidence 5666765321 25667888 9999 999998 88999 999999999999 9988777665443
No 206
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-22 Score=142.67 Aligned_cols=137 Identities=11% Similarity=0.145 Sum_probs=99.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc-------cccccCC-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK-------PLEKKAG----- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----- 66 (163)
+||.+.+||.+.|.||||||||||+|++.|+++| |+|++++.++..........-...+ .+...++
T Consensus 21 L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~ 100 (209)
T COG4133 21 LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQ 100 (209)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 5899999999999999999999999999999876 9999998887665432111101111 0111111
Q ss_pred ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 67 RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
.+++......+...++.+++...+ +.++.+| |.|| ++|+++ -.+...+++++|||+++ ||....
T Consensus 101 ~~~~~~~~~~i~~Al~~vgL~g~~---dlp~~~L-----SAGQ---qRRvAlArL~ls~~pLWiLDEP~ta---LDk~g~ 166 (209)
T COG4133 101 RFHGSGNAATIWEALAQVGLAGLE---DLPVGQL-----SAGQ---QRRVALARLWLSPAPLWILDEPFTA---LDKEGV 166 (209)
T ss_pred HHhCCCchhhHHHHHHHcCccccc---ccchhhc-----chhH---HHHHHHHHHHcCCCCceeecCcccc---cCHHHH
Confidence 122222334455677888887777 8889999 9999 999999 56677899999999999 998877
Q ss_pred hceeEEE
Q psy2657 145 RHFYVFA 151 (163)
Q Consensus 145 ~~~~~~~ 151 (163)
..|..+.
T Consensus 167 a~l~~l~ 173 (209)
T COG4133 167 ALLTALM 173 (209)
T ss_pred HHHHHHH
Confidence 7665443
No 207
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.82 E-value=4.2e-22 Score=163.80 Aligned_cols=138 Identities=15% Similarity=0.182 Sum_probs=93.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc------------ccccC-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP------------LEKKA- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~- 65 (163)
+||++++|++++|+||||||||||+|+++|.++| |+|.++|.++.........+..+... +....
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~ 361 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWN 361 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHH
Confidence 5899999999999999999999999999999765 99999988765432221111000000 00000
Q ss_pred ------C--ceecCCC--CceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 66 ------G--RNFGPPG--NKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 66 ------~--~~~~~~~--~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
. ..+.... .+.+..+++.+++. ... ++++.+| |+|| +||+++ +++.+|+++++|||
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~L-----SgG~---kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 362 VCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA---EQAARTL-----SGGN---QQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred HHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCc---cCccccC-----CcHH---HHHHHHHHHHhhCCCEEEECCC
Confidence 0 0000000 11233456667774 332 7788999 9999 999998 88999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
|+| ||+..++.+..++.
T Consensus 431 t~g---LD~~~~~~l~~~l~ 447 (510)
T PRK15439 431 TRG---VDVSARNDIYQLIR 447 (510)
T ss_pred CcC---cChhHHHHHHHHHH
Confidence 999 99988877655433
No 208
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.81 E-value=7e-22 Score=146.71 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=89.8
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC-------CCCHH--------HHHHHHhccccccC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF-------YTSSE--------MLQKVLEKPLEKKA 65 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~ 65 (163)
|++++||+++|+||||||||||+++++|.++| |++.++|.++.. ..... .....+........
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999998765 999999875421 00000 00001000000000
Q ss_pred Cceec-CC--CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 66 GRNFG-PP--GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 66 ~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
..+. .. ..+++...++.+++... .+.++.++ |+|+ +||+++ +++.+|+++++|||+++ ||
T Consensus 81 -~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~L-----S~G~---~qrv~laral~~~p~llilDEP~~~---LD 145 (223)
T TIGR03771 81 -GWLRRPCVADFAAVRDALRRVGLTEL---ADRPVGEL-----SGGQ---RQRVLVARALATRPSVLLLDEPFTG---LD 145 (223)
T ss_pred -ccccCCcHHHHHHHHHHHHHhCCchh---hcCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---CC
Confidence 0010 00 01123345566666433 36678888 9999 999998 99999999999999999 99
Q ss_pred chhhhceeEEEEc
Q psy2657 141 PRLQRHFYVFALR 153 (163)
Q Consensus 141 ~~~~~~~~~~~l~ 153 (163)
+..+..+..+..+
T Consensus 146 ~~~~~~l~~~l~~ 158 (223)
T TIGR03771 146 MPTQELLTELFIE 158 (223)
T ss_pred HHHHHHHHHHHHH
Confidence 9887776555443
No 209
>KOG0058|consensus
Probab=99.81 E-value=1.6e-21 Score=160.82 Aligned_cols=133 Identities=20% Similarity=0.284 Sum_probs=86.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||+|++||+|+||||||+||||+++.+...++| |+|.+||.+++..+.....+.+ ...-+ +...|.....+.+.
T Consensus 487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I-g~V~Q--EPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI-GLVGQ--EPVLFSGSIRENIA 563 (716)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe-eeeec--cceeecccHHHHHh
Confidence 5899999999999999999999999999999877 9999999999888765544332 11100 00112222222222
Q ss_pred EEEecCCCCCCc-CCCCCCHHHHHHHH--------------HhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 79 YFVDDMNMPEVD-AYGTVQPHTVIRQY--------------MDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 79 ~~l~~~~l~~~~-~~~~~~~~ellr~~--------------~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
+-++....++.. .......+++++.+ +|+|| |||+|| |++++|.++++||.|+. ||.
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ---KQRIAIARALlr~P~VLILDEATSA---LDa 637 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ---KQRIAIARALLRNPRVLILDEATSA---LDA 637 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH---HHHHHHHHHHhcCCCEEEEechhhh---cch
Confidence 222211110000 00011233333332 49999 999999 99999999999999999 875
Q ss_pred h
Q psy2657 142 R 142 (163)
Q Consensus 142 ~ 142 (163)
.
T Consensus 638 e 638 (716)
T KOG0058|consen 638 E 638 (716)
T ss_pred h
Confidence 4
No 210
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.81 E-value=2.7e-21 Score=134.53 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=72.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||.+++||+++|+||||||||||+++++|.++| |++.+++.. .+.
T Consensus 19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~--------------------------------~i~ 66 (144)
T cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV--------------------------------KIG 66 (144)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE--------------------------------EEE
Confidence 5789999999999999999999999999999765 888877630 000
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
++.. + |+|+ +||+++ +++.+|+++++|||+++ +|+..+..+..
T Consensus 67 -~~~~----------------l-----S~G~---~~rv~laral~~~p~illlDEP~~~---LD~~~~~~l~~ 111 (144)
T cd03221 67 -YFEQ----------------L-----SGGE---KMRLALAKLLLENPNLLLLDEPTNH---LDLESIEALEE 111 (144)
T ss_pred -EEcc----------------C-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC---CCHHHHHHHHH
Confidence 0000 3 9999 999988 99999999999999999 99887766643
No 211
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3e-22 Score=152.58 Aligned_cols=141 Identities=12% Similarity=0.061 Sum_probs=89.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCC-CCHHHHHHHHhccccc---cCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFY-TSSEMLQKVLEKPLEK---KAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~--- 66 (163)
+||++++||+++|+||||||||||+++++|.++ .|++.++|.++... .........+...... ...
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 111 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIY 111 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHH
Confidence 589999999999999999999999999999853 39999999876421 1111111111000000 000
Q ss_pred -------ceecCC--CCceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 67 -------RNFGPP--GNKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 67 -------~~~~~~--~~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
...+.. ..+++...++.+++.. .....++++.+| |+|+ +||+++ +++.+|+++++|||++
T Consensus 112 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~G~---~qrl~laral~~~p~lllLDEPt~ 183 (269)
T PRK14259 112 ENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSL-----SGGQ---QQRLCIARTIAIEPEVILMDEPCS 183 (269)
T ss_pred HHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCc
Confidence 000000 0011122333344321 112235567777 9999 999998 8999999999999999
Q ss_pred CcccCCchhhhceeEEEE
Q psy2657 135 GSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l 152 (163)
| ||+..+..+..++.
T Consensus 184 g---LD~~~~~~l~~~l~ 198 (269)
T PRK14259 184 A---LDPISTLKIEETMH 198 (269)
T ss_pred c---CCHHHHHHHHHHHH
Confidence 9 99888776654443
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.3e-22 Score=170.22 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=96.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HHHHHh----cc---c----cccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQKVLE----KP---L----EKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~~~~~----~~---~----~~~~ 65 (163)
+||+|.+||+++|+||||||||||+++|+|.++| |+|+++|.++........ ....+. .+ + ....
T Consensus 343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~ 422 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGD 422 (623)
T ss_pred eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHH
Confidence 5899999999999999999999999999999765 999999987754322111 111010 00 0 0000
Q ss_pred C-----ceecC-C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 66 G-----RNFGP-P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 66 ~-----~~~~~-~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
. ...+. . ..+++..+++.++++.. +.++++.+| |+|| |||+++ +++.+|+++++||||+
T Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--~~~~~~~~L-----SgGq---rQRv~iAraL~~~p~llllDEPts 492 (623)
T PRK10261 423 SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE--HAWRYPHEF-----SGGQ---RQRICIARALALNPKVIIADEAVS 492 (623)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHH--HhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0 00000 0 01234456777888521 126778999 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
+ ||+..+..+..++.+
T Consensus 493 ~---LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 493 A---LDVSIRGQIINLLLD 508 (623)
T ss_pred c---CCHHHHHHHHHHHHH
Confidence 9 999888776655544
No 213
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.1e-22 Score=149.92 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=90.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCC-CCHHHHHHHHhccc---------cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFY-TSSEMLQKVLEKPL---------EK 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~-~~~~~~~~~~~~~~---------~~ 63 (163)
+||++.+||+++|+||||||||||+++++|.++ .|+|.++|.++... .........+.... ..
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTI 102 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcH
Confidence 589999999999999999999999999999964 59999999887521 11111111111000 00
Q ss_pred cCCceec----C---CC---CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 64 KAGRNFG----P---PG---NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 64 ~~~~~~~----~---~~---~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
.....+. . .. .+++...++.+++... ....+..+.+| |+|+ +||+++ +++.+|+++++|
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllD 174 (253)
T PRK14267 103 YDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNL-----SGGQ---RQRLVIARALAMKPKILLMD 174 (253)
T ss_pred HHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEc
Confidence 0000000 0 00 0112234455555321 11225667888 9999 999998 899999999999
Q ss_pred cCCCCcccCCchhhhceeEEEE
Q psy2657 131 NPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~~~l 152 (163)
||+++ ||+.....+..+..
T Consensus 175 EP~~~---LD~~~~~~l~~~l~ 193 (253)
T PRK14267 175 EPTAN---IDPVGTAKIEELLF 193 (253)
T ss_pred CCCcc---CCHHHHHHHHHHHH
Confidence 99999 99888766644433
No 214
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=1.3e-22 Score=166.48 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=95.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc---c---------ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK---P---------LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~ 66 (163)
+||++.+||+++|+||||||||||+|+++|.++| |+|.++|.++.........+..+.. . +.....
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 350 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKEN 350 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHH
Confidence 5899999999999999999999999999999765 9999999876533211111100000 0 000000
Q ss_pred ce------e----c---C-CCCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 67 RN------F----G---P-PGNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 67 ~~------~----~---~-~~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
.. + + . ...+++..+++.+++. .. .++++.+| |+|| +||+++ +++.+|+++++
T Consensus 351 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~L-----SgGe---kqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 351 MSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPS---MEQAIGLL-----SGGN---QQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred hhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCC---ccCchhhC-----CHHH---HHHHHHHHHHhhCCCEEEE
Confidence 00 0 0 0 0011233566677774 22 27789999 9999 999998 89999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEcC
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~~ 154 (163)
||||+| ||+..+..+..++...
T Consensus 420 DEPt~~---LD~~~~~~l~~~l~~~ 441 (501)
T PRK10762 420 DEPTRG---VDVGAKKEIYQLINQF 441 (501)
T ss_pred cCCCCC---CCHhHHHHHHHHHHHH
Confidence 999999 9998887765554443
No 215
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.1e-21 Score=140.02 Aligned_cols=130 Identities=11% Similarity=0.200 Sum_probs=95.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecCCCCHHHHHHHHhccccc--------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNFYTSSEMLQKVLEKPLEK-------------- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------- 63 (163)
+||++.+||.-+|+||||+||||++..|.|.-+| |+++++| .+++..+.....+.-+...+..
T Consensus 24 ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLe 103 (249)
T COG4674 24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLE 103 (249)
T ss_pred eEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHH
Confidence 5899999999999999999999999999998665 9999999 8888877766665543332221
Q ss_pred ----cCCceecC-------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 64 ----KAGRNFGP-------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 64 ----~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
..+.+|.. ...+++...+...++.+.. +.....| |+|| ||++.| .++++|+++++|
T Consensus 104 lA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~---~~~A~~L-----SHGq---KQwLEIGMll~Q~P~lLLlD 172 (249)
T COG4674 104 LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER---DRLAALL-----SHGQ---KQWLEIGMLLAQDPKLLLLD 172 (249)
T ss_pred HHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh---hhhhhhh-----ccch---hhhhhhheeeccCCcEEEec
Confidence 11122211 1122444566666776655 5556666 9999 999998 888999999999
Q ss_pred cCCCCcccCCchhh
Q psy2657 131 NPTSGSFTIEPRLQ 144 (163)
Q Consensus 131 eP~~g~~~l~~~~~ 144 (163)
||.+| ++..-.
T Consensus 173 EPvAG---MTd~Et 183 (249)
T COG4674 173 EPVAG---MTDAET 183 (249)
T ss_pred CccCC---CcHHHH
Confidence 99999 664433
No 216
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.81 E-value=1.3e-21 Score=142.98 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=82.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--C--CCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--P--PETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKT 76 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
+||++.+||+++|+||||||||||+++++|.+ + .|++.++|.++.........+..+ .|-+....
T Consensus 19 is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i----------~~v~q~~~- 87 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI----------FLAFQYPP- 87 (200)
T ss_pred cceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE----------EEeecChh-
Confidence 58999999999999999999999999999983 3 399999998876543222111100 00000000
Q ss_pred EEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 77 MIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 77 ~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
. ....... + ..+..+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+.....+..+...
T Consensus 88 ~---~~~~~~~--~-~l~~~~~~L-----S~G~---~qrv~laral~~~p~illlDEPt~~---LD~~~~~~l~~~L~~ 149 (200)
T cd03217 88 E---IPGVKNA--D-FLRYVNEGF-----SGGE---KKRNEILQLLLLEPDLAILDEPDSG---LDIDALRLVAEVINK 149 (200)
T ss_pred h---ccCccHH--H-HHhhccccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcc---CCHHHHHHHHHHHHH
Confidence 0 0000000 0 001112345 9999 999998 99999999999999999 998887776554443
No 217
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2e-21 Score=145.26 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=85.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--------cCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------KAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 70 (163)
+||.+.+|++++|+||||||||||+++|+|..+| |+|.++|.++........ ...+...... .....+.
T Consensus 20 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~tv~~nl~~~ 98 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL-RRAIGVVPQDTVLFNDTIGYNIRYG 98 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHH-HhhEEEECCCChhhcchHHHHHhhc
Confidence 5789999999999999999999999999999765 999999987754322211 1111000000 0000000
Q ss_pred CCC--CceEEEEEecCCCC--------CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PPG--NKTMIYFVDDMNMP--------EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~~--~~~~~~~l~~~~l~--------~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
... .+.....++..++. ..+...+..+.+| |+|+ +||+++ +++.+|+++++|||++|
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L-----S~G~---~~rl~la~aL~~~p~llllDEP~~~--- 167 (236)
T cd03253 99 RPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL-----SGGE---KQRVAIARAILKNPPILLLDEATSA--- 167 (236)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 000 00000000001110 0011113345566 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 168 LD~~~~~~l~~~l~ 181 (236)
T cd03253 168 LDTHTEREIQAALR 181 (236)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988766544443
No 218
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.4e-22 Score=148.83 Aligned_cols=136 Identities=13% Similarity=0.199 Sum_probs=92.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--- 66 (163)
+||++.+||+++|+||||||||||++++.|.++| |+++++|.++....... ..+.... .....
T Consensus 18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~---~~i~~~~q~~~~~~~~t~~e~l~~ 94 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK---RDISYVPQNYALFPHMTVYKNIAY 94 (235)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhH---cCEEEEeecCccCCCccHHHHHHH
Confidence 5789999999999999999999999999998766 99999998765432211 0000000 00000
Q ss_pred --ceec---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFG---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...+ ....+++..+++.+++.... ++.+.++ |+|+ +||+++ +++.+|+++++|||++| |
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----S~G~---~qrl~laral~~~p~llllDEPt~g---L 160 (235)
T cd03299 95 GLKKRKVDKKEIERKVLEIAEMLGIDHLL---NRKPETL-----SGGE---QQRVAIARALVVNPKILLLDEPFSA---L 160 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHH---hcCcccC-----CHHH---HHHHHHHHHHHcCCCEEEECCCccc---C
Confidence 0000 00111233456666665433 5667777 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
|+..+..+..+..+
T Consensus 161 D~~~~~~l~~~l~~ 174 (235)
T cd03299 161 DVRTKEKLREELKK 174 (235)
T ss_pred CHHHHHHHHHHHHH
Confidence 98877666544433
No 219
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=8.9e-22 Score=161.18 Aligned_cols=139 Identities=12% Similarity=0.163 Sum_probs=93.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC---CCCeeeeeeeecCCCCHHHHHHHHh---------ccc--ccc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP---PETYALTSVPFNFYTSSEMLQKVLE---------KPL--EKK-- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~-- 64 (163)
+||.+.+||+++|+||||||||||+|+++|..+ .|+|+++|.+.............+. ... ...
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 358 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNV 358 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHH
Confidence 589999999999999999999999999999865 4999999876432111111111000 000 000
Q ss_pred -----CC--ceecC-C--CCceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 65 -----AG--RNFGP-P--GNKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 65 -----~~--~~~~~-~--~~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
.. ..+.. . ..+++..+++.+++.. .. ++++.+| |+|| +||+++ +++.+|+++++||
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~L-----SgGq---~qrv~la~al~~~p~lllLDE 427 (490)
T PRK10938 359 ILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA---DAPFHSL-----SWGQ---QRLALIVRALVKHPTLLILDE 427 (490)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc---cCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcC
Confidence 00 00000 0 0112345666777754 33 7789999 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEEEc
Q psy2657 132 PTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~l~ 153 (163)
||+| ||+..++.+..+...
T Consensus 428 Pt~g---LD~~~~~~l~~~L~~ 446 (490)
T PRK10938 428 PLQG---LDPLNRQLVRRFVDV 446 (490)
T ss_pred cccc---CCHHHHHHHHHHHHH
Confidence 9999 998887766544433
No 220
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=8.1e-22 Score=150.37 Aligned_cols=137 Identities=13% Similarity=0.164 Sum_probs=89.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC----------CCCeeeeeeeecCCCCHHHHHHHHhcc---------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP----------PETYALTSVPFNFYTSSEMLQKVLEKP---------L 61 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~----------~g~i~~~~~~~~~~~~~~~~~~~~~~~---------~ 61 (163)
+||.+++||+++|+||||||||||+++|+|.++ .|+|.++|.++........ ...+... +
T Consensus 20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~-~~~~~~v~q~~~~~~~~ 98 (272)
T PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL-ARLRAVLPQAAQPAFAF 98 (272)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH-HhhcEEecccCCCCCCC
Confidence 589999999999999999999999999999864 5889999987754332221 1111000 0
Q ss_pred cccCCceec--C----------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eee------
Q psy2657 62 EKKAGRNFG--P----------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDI------ 121 (163)
Q Consensus 62 ~~~~~~~~~--~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~------ 121 (163)
.......+. . ...+.+...++.+++.... ++++.+| |+|+ +||+++ +++
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgG~---~qrv~laral~~~~~~~ 167 (272)
T PRK13547 99 SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV---GRDVTTL-----SGGE---LARVQFARVLAQLWPPH 167 (272)
T ss_pred cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh---cCCcccC-----CHHH---HHHHHHHHHHhcccccc
Confidence 000000000 0 0001122334445554322 5667777 9999 999998 777
Q ss_pred ---cceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 122 ---HNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 122 ---~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
.+|+++++|||+++ ||+..+..+..++.
T Consensus 168 ~~~~~p~lllLDEPt~~---LD~~~~~~l~~~l~ 198 (272)
T PRK13547 168 DAAQPPRYLLLDEPTAA---LDLAHQHRLLDTVR 198 (272)
T ss_pred ccCCCCCEEEEcCcccc---CCHHHHHHHHHHHH
Confidence 49999999999999 99887776644433
No 221
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=4.1e-22 Score=147.54 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=86.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecC-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGP------- 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 71 (163)
+||.+++|++++|+||||||||||+++++|.++| |++.++|.++...+... ....+...... ..++..
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~q~--~~l~~~tv~enl~ 99 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD-LRSRISIIPQD--PVLFSGTIRSNLD 99 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHH-HhhhEEEECCC--CccccchHHHHhC
Confidence 5899999999999999999999999999998765 99999998765433222 11111100000 001100
Q ss_pred ----CCCceEEEEEecCCCCCC--------cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 72 ----PGNKTMIYFVDDMNMPEV--------DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 72 ----~~~~~~~~~l~~~~l~~~--------~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
...+++...++.+++.+. +...+..+.++ |+|+ +|++++ +++.+|+++++|||+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~L-----S~G~---~qr~~laral~~~p~llllDEP~~~-- 169 (221)
T cd03244 100 PFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL-----SVGQ---RQLLCLARALLRKSKILVLDEATAS-- 169 (221)
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc--
Confidence 000011111122222110 00112345556 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEE
Q psy2657 138 TIEPRLQRHFYVFAL 152 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 170 -LD~~~~~~l~~~l~ 183 (221)
T cd03244 170 -VDPETDALIQKTIR 183 (221)
T ss_pred -CCHHHHHHHHHHHH
Confidence 99887766644443
No 222
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.80 E-value=3.1e-22 Score=161.10 Aligned_cols=133 Identities=14% Similarity=0.214 Sum_probs=95.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHH--------------------HHHh
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQ--------------------KVLE 58 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~--------------------~~~~ 58 (163)
+||.+.+||+++|+|+||||||||+|++.|.++| |+|.++|+++...++..-.. +++.
T Consensus 27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifL 106 (500)
T COG1129 27 VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFL 106 (500)
T ss_pred ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhc
Confidence 6899999999999999999999999999999876 99999999987765543222 1111
Q ss_pred cccccc-CCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 59 KPLEKK-AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 59 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
+..... .+.+-+....+++...++.+++.. + -+.++.+| |.++ ||.++| ++..+++++++||||+.
T Consensus 107 gre~~~~~g~id~~~m~~~A~~~l~~lg~~~-~--~~~~v~~L-----siaq---rQ~VeIArAl~~~arllIlDEPTaa 175 (500)
T COG1129 107 GREPTRRFGLIDRKAMRRRARELLARLGLDI-D--PDTLVGDL-----SIAQ---RQMVEIARALSFDARVLILDEPTAA 175 (500)
T ss_pred ccccccCCCccCHHHHHHHHHHHHHHcCCCC-C--hhhhhhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc
Confidence 111111 011111222334455666776641 1 26668888 9999 999999 88899999999999999
Q ss_pred cccCCchhhhce
Q psy2657 136 SFTIEPRLQRHF 147 (163)
Q Consensus 136 ~~~l~~~~~~~~ 147 (163)
|+++-..++
T Consensus 176 ---Lt~~E~~~L 184 (500)
T COG1129 176 ---LTVKETERL 184 (500)
T ss_pred ---CCHHHHHHH
Confidence 887766554
No 223
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.8e-22 Score=161.27 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=92.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc------------ccc---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP------------LEK--- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~------------~~~--- 63 (163)
+||.+.+||+++|+||||||||||+++++|.++| |+|.++|.++............+... +..
T Consensus 267 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence 5899999999999999999999999999999765 99999998875433221111100000 000
Q ss_pred -----cC--CceecC-CC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 64 -----KA--GRNFGP-PG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 64 -----~~--~~~~~~-~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
.. ...++. .. .+.+..+++.+++... ..++++.+| |+|| +||+++ +++.+|+++++|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgGq---~qrv~la~al~~~p~illLD 416 (491)
T PRK10982 347 SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP--GHRTQIGSL-----SGGN---QQKVIIGRWLLTQPEILMLD 416 (491)
T ss_pred eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC--CcccccccC-----CcHH---HHHHHHHHHHhcCCCEEEEc
Confidence 00 000000 00 0112233445555311 127788899 9999 999998 899999999999
Q ss_pred cCCCCcccCCchhhhceeEEE
Q psy2657 131 NPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~~~ 151 (163)
|||+| ||+..+..+..+.
T Consensus 417 EPt~g---LD~~~~~~~~~~l 434 (491)
T PRK10982 417 EPTRG---IDVGAKFEIYQLI 434 (491)
T ss_pred CCCcc---cChhHHHHHHHHH
Confidence 99999 9998887765433
No 224
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.80 E-value=6.7e-22 Score=150.58 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=89.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH--HHHHHHhccccc----cC--Cc---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE--MLQKVLEKPLEK----KA--GR--- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~--~~--- 67 (163)
+||++++||+++|+||||||||||+++|+|..+| |++.++|.++....... .....+...... .. ..
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~ 110 (268)
T PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVRE 110 (268)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHH
Confidence 5799999999999999999999999999998655 99999998765433211 111111100000 00 00
Q ss_pred -e-------ecCC---CCceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 68 -N-------FGPP---GNKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 68 -~-------~~~~---~~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
+ .... ....+...++.+++.. .. ++.+.++ |+|+ +||+++ +++.+|+++++|||+
T Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~~L-----S~Ge---~qrl~laral~~~p~lllLDEPt 179 (268)
T PRK10419 111 IIREPLRHLLSLDKAERLARASEMLRAVDLDDSVL---DKRPPQL-----SGGQ---LQRVCLARALAVEPKLLILDEAV 179 (268)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHh---hCCCccC-----ChHH---HHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 0000 0112334455556632 22 5567777 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeE
Q psy2657 134 SGSFTIEPRLQRHFYV 149 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~ 149 (163)
++ ||+..+..+..
T Consensus 180 ~~---LD~~~~~~~~~ 192 (268)
T PRK10419 180 SN---LDLVLQAGVIR 192 (268)
T ss_pred cc---cCHHHHHHHHH
Confidence 99 99876555443
No 225
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.80 E-value=2.1e-22 Score=152.92 Aligned_cols=134 Identities=16% Similarity=0.009 Sum_probs=85.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee-ecCCC----CHHHHHHHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP-FNFYT----SSEMLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.. +.... ........+..... ..+ ......
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~-~~~-~~~~~~ 120 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKML-CMG-FKRKEI 120 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHH-HcC-CCHHHH
Confidence 5899999999999999999999999999999765 888888742 11110 00011111110000 000 000000
Q ss_pred CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 74 NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 74 ~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
.+.+..+++.+++... .+..+.++ |+|+ +||+++ +++.+|+++++|||++| ||+..++.+..+
T Consensus 121 ~~~~~~~l~~~~l~~~---~~~~~~~L-----S~Gq---~qrv~Laral~~~p~iLlLDEPt~g---LD~~~~~~l~~~ 185 (264)
T PRK13546 121 KAMTPKIIEFSELGEF---IYQPVKKY-----SSGM---RAKLGFSINITVNPDILVIDEALSV---GDQTFAQKCLDK 185 (264)
T ss_pred HHHHHHHHHHcCCchh---hcCCcccC-----CHHH---HHHHHHHHHHhhCCCEEEEeCcccc---CCHHHHHHHHHH
Confidence 0111123334455332 26678888 9999 999988 99999999999999999 998766555443
No 226
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.80 E-value=8.1e-22 Score=147.59 Aligned_cols=137 Identities=16% Similarity=0.226 Sum_probs=90.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHH--HH-----hccccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQK--VL-----EKPLEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~--~~-----~~~~~~~~~ 66 (163)
+||++.+||+++|+||||||||||+++|+|.++| |++.++|.++........ .+. .+ ...+... .
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~-~ 97 (237)
T TIGR00968 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFG-L 97 (237)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhH-H
Confidence 5789999999999999999999999999998765 999999987643221100 000 00 0000000 0
Q ss_pred ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 67 RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 67 ~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
...+.. ..+.+...++.+++... .++.+.++ |+|+ +|++++ +++.+|+++++|||++| ||+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~l-----S~G~---~qrl~laral~~~p~llllDEP~~~---LD~ 163 (237)
T TIGR00968 98 EIRKHPKAKIKARVEELLELVQLEGL---GDRYPNQL-----SGGQ---RQRVALARALAVEPQVLLLDEPFGA---LDA 163 (237)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhH---hhCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---CCH
Confidence 000000 01122344555566432 25667777 9999 999998 99999999999999999 998
Q ss_pred hhhhceeEEEE
Q psy2657 142 RLQRHFYVFAL 152 (163)
Q Consensus 142 ~~~~~~~~~~l 152 (163)
...+.+..+..
T Consensus 164 ~~~~~~~~~l~ 174 (237)
T TIGR00968 164 KVRKELRSWLR 174 (237)
T ss_pred HHHHHHHHHHH
Confidence 88776654443
No 227
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.5e-20 Score=137.09 Aligned_cols=131 Identities=10% Similarity=0.134 Sum_probs=93.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccC-------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKA------------- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 65 (163)
+|.+|++||..+|+||||||||||++.+.+..+| |.+.+.|..+...+....+++.+...-...+
T Consensus 50 isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvV 129 (257)
T COG1119 50 LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVV 129 (257)
T ss_pred cceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceee
Confidence 5789999999999999999999999999999877 8899999998877763444433322111000
Q ss_pred -------CceecCCC----CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 66 -------GRNFGPPG----NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 66 -------~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
-.+|.... ..++..+++.+++.... +++...| |.|+ ++++-| |++.+|+++++|||
T Consensus 130 lSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la---~r~~~~L-----S~Ge---~rrvLiaRALv~~P~LLiLDEP 198 (257)
T COG1119 130 LSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA---DRPFGSL-----SQGE---QRRVLIARALVKDPELLILDEP 198 (257)
T ss_pred eecccccccccccCCCHHHHHHHHHHHHHcchhhhc---cCchhhc-----CHhH---HHHHHHHHHHhcCCCEEEecCc
Confidence 01111000 11233445555555444 6677777 9999 998887 99999999999999
Q ss_pred CCCcccCCchhhh
Q psy2657 133 TSGSFTIEPRLQR 145 (163)
Q Consensus 133 ~~g~~~l~~~~~~ 145 (163)
+.| ||...+.
T Consensus 199 ~~G---LDl~~re 208 (257)
T COG1119 199 AQG---LDLIARE 208 (257)
T ss_pred ccc---CChHHHH
Confidence 999 9976663
No 228
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.8e-22 Score=149.74 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=89.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc--------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK--------K 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~ 64 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++.... .....+..+...... .
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 105 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIY 105 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHH
Confidence 589999999999999999999999999999875 489999998764321 111111111100000 0
Q ss_pred CCceec-----CCC----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGRNFG-----PPG----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~~~~-----~~~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
....++ ... .+.+...++.+++... ....+..+.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 106 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----SgG~---~qrv~laral~~~p~lllLDEP 177 (254)
T PRK14273 106 DNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSL-----SGGQ---QQRLCIARTLAIEPNVILMDEP 177 (254)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCC
Confidence 000000 000 0112223334443210 11124556677 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEEc
Q psy2657 133 TSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+++ ||+.....+..++..
T Consensus 178 t~~---LD~~~~~~l~~~l~~ 195 (254)
T PRK14273 178 TSA---LDPISTGKIEELIIN 195 (254)
T ss_pred Ccc---cCHHHHHHHHHHHHH
Confidence 999 998887766544433
No 229
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.80 E-value=1.8e-21 Score=160.61 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=89.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccC-----Cceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKA-----GRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~ 70 (163)
+||++++||.++|+||||||||||++.++|.++| |+|.++|.++... ... .++.+....+ .+. +..++
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~-lr~~i~~V~Q~~~lF~~TI~eNI~~g 431 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDE-LRRRISVFAQDAHLFDTTVRDNLRLG 431 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHH-HHhheEEEccCcccccccHHHHHhcc
Confidence 5899999999999999999999999999999876 9999999998765 332 2222211100 000 11111
Q ss_pred CC--CCceEEEEEecCCCCCC-----cCCC---CCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PP--GNKTMIYFVDDMNMPEV-----DAYG---TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~--~~~~~~~~l~~~~l~~~-----~~~~---~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+ ..+++...++..++.+. +.+. ...-..+ |+|| |||+++ +++.+|+++++||||++
T Consensus 432 ~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L-----SGGQ---rQRiaiARall~~~~iliLDE~TSa--- 500 (529)
T TIGR02868 432 RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL-----SGGE---RQRLALARALLADAPILLLDEPTEH--- 500 (529)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 11 11222223333332110 0110 1112235 9999 999999 99999999999999999
Q ss_pred CCchhhhceeEE
Q psy2657 139 IEPRLQRHFYVF 150 (163)
Q Consensus 139 l~~~~~~~~~~~ 150 (163)
||+...+.+...
T Consensus 501 LD~~te~~I~~~ 512 (529)
T TIGR02868 501 LDAGTESELLED 512 (529)
T ss_pred CCHHHHHHHHHH
Confidence 998887665433
No 230
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=2.2e-22 Score=138.33 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=104.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-----CCeeeeeeeecCCCCHHHHHHHHhc------cccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-----ETYALTSVPFNFYTSSEMLQKVLEK------PLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 69 (163)
+|++|.+||+|-|+||||||||||+.-+.|-+.+ |+++++++.++..+....-..++.. .+....+.+|
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~f 100 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLF 100 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEE
Confidence 5899999999999999999999999999888754 8899999888776544322111111 1111111122
Q ss_pred c-------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 70 G-------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 70 ~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
- ...++.+...+++.++...- ++.|..+ |+|+ |.|+++ +++..|+++++|||++. ||
T Consensus 101 Alp~~~KG~aRr~~a~aAL~~~gL~g~f---~~dP~tl-----SGGQ---rARvaL~R~Lla~Pk~lLLDEPFS~---LD 166 (213)
T COG4136 101 ALPATLKGNARRNAANAALERSGLDGAF---HQDPATL-----SGGQ---RARVALLRALLAQPKALLLDEPFSR---LD 166 (213)
T ss_pred ecCcccccHHHHhhHHHHHHHhccchhh---hcChhhc-----Ccch---HHHHHHHHHHHhCcceeeeCCchhH---HH
Confidence 1 11122234567777776554 7789999 9999 999998 89999999999999999 99
Q ss_pred chhhhceeEEEEcCCcc
Q psy2657 141 PRLQRHFYVFALRLGLL 157 (163)
Q Consensus 141 ~~~~~~~~~~~l~~~~~ 157 (163)
..++.+|+.++..+..+
T Consensus 167 ~ALR~qfR~wVFs~~r~ 183 (213)
T COG4136 167 VALRDQFRQWVFSEVRA 183 (213)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999988776655443
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=8.7e-22 Score=162.60 Aligned_cols=140 Identities=14% Similarity=0.193 Sum_probs=94.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-CCCeeeeeeeecCCCCHHH--HHHHHhc-----------cccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-PETYALTSVPFNFYTSSEM--LQKVLEK-----------PLEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-~g~i~~~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~ 66 (163)
+||++++||+++|+||||||||||+|+++|.++ .|+|+++|.++........ ....+.. .+.....
T Consensus 305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~ 384 (529)
T PRK15134 305 ISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384 (529)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHH
Confidence 589999999999999999999999999999874 4999999987654322111 0110100 0000000
Q ss_pred c-----eec--CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 67 R-----NFG--PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 67 ~-----~~~--~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
. .+. .. ..+++..+++.+++... ..++++.+| |+|| +||+++ +++.+|+++++||||+
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgG~---~qrv~la~al~~~p~llllDEPt~ 454 (529)
T PRK15134 385 IEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE--TRHRYPAEF-----SGGQ---RQRIAIARALILKPSLIILDEPTS 454 (529)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHcCCCHH--HHhcCCccC-----CHHH---HHHHHHHHHHhCCCCEEEeeCCcc
Confidence 0 000 00 01233456777777521 126778899 9999 999998 8999999999999999
Q ss_pred CcccCCchhhhceeEEEEc
Q psy2657 135 GSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~ 153 (163)
+ ||+..++.+..++.+
T Consensus 455 ~---LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 455 S---LDKTVQAQILALLKS 470 (529)
T ss_pred c---cCHHHHHHHHHHHHH
Confidence 9 999887766554443
No 232
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=1.1e-21 Score=143.66 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=82.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecCCCCHHHHHHHHhccccccCCceecCCCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNK-- 75 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 75 (163)
+||++++|++++|+||||||||||+++++|..+| |+|.++| ..+-.+.... +...+..++.... ........+
T Consensus 24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l-~~~t~~enl~~~~-~~~~~~~~~~~ 101 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWI-QNGTIRENILFGK-PFDEERYEKVI 101 (204)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchh-ccCcHHHHhccCC-CcCHHHHHHHH
Confidence 5899999999999999999999999999998665 9998887 2222222111 0001111110000 000000000
Q ss_pred eEEEEEecCCCC--CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 76 TMIYFVDDMNMP--EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 76 ~~~~~l~~~~l~--~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
+.....+.++.. ..+...+..+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+...+.+..
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~~l-----S~G~---~qrv~laral~~~p~llllDEP~~~---LD~~~~~~l~~ 168 (204)
T cd03250 102 KACALEPDLEILPDGDLTEIGEKGINL-----SGGQ---KQRISLARAVYSDADIYLLDDPLSA---VDAHVGRHIFE 168 (204)
T ss_pred HHcCcHHHHHhccCcccceecCCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc---CCHHHHHHHHH
Confidence 000111111110 0111124456677 9999 999998 99999999999999999 99988766543
No 233
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.9e-21 Score=147.24 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=91.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCC-HHHHHHHHhcccccc--------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTS-SEMLQKVLEKPLEKK-------- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------- 64 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++..... .......+.......
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 110 (258)
T PRK14268 31 VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIY 110 (258)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHH
Confidence 589999999999999999999999999999863 4999999987653211 111111111000000
Q ss_pred CCcee-----cCCC---CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 65 AGRNF-----GPPG---NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 65 ~~~~~-----~~~~---~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
....+ +... .+++..+++.+++... ....+.++.+| |+|+ +||+++ +++.+|+++++|||+
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgG~---~qrv~laral~~~p~llllDEPt 182 (258)
T PRK14268 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSL-----SGGQ---QQRLCIARTLAVKPKIILFDEPT 182 (258)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCC
Confidence 00000 0000 0112234455555211 11225667788 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeEEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l 152 (163)
+| ||+..+..+..++.
T Consensus 183 ~~---LD~~~~~~l~~~l~ 198 (258)
T PRK14268 183 SA---LDPISTARIEDLIM 198 (258)
T ss_pred cc---cCHHHHHHHHHHHH
Confidence 99 99888776654443
No 234
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=9.8e-22 Score=161.29 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=93.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC----CCCeeeeeeeecCCCCHHHHHHHHhcc---------ccccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP----PETYALTSVPFNFYTSSEMLQKVLEKP---------LEKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~----~g~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 67 (163)
+||++++|++++|+||||||||||+++++|.++ .|+|.++|.++............+... +......
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 99 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENI 99 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHH
Confidence 589999999999999999999999999999865 489999998775432211111100000 0000000
Q ss_pred eecC------------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 68 NFGP------------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 68 ~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
.+.. ...+++..+++.+++.... .++++.+| |+|| +||+++ +++.+|+++++||||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~L-----SgG~---~qrv~iA~al~~~p~lllLDEPt 169 (500)
T TIGR02633 100 FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN--VTRPVGDY-----GGGQ---QQLVEIAKALNKQARLLILDEPS 169 (500)
T ss_pred HhhccccccccccCHHHHHHHHHHHHHHcCCCCCc--ccCchhhC-----CHHH---HHHHHHHHHHhhCCCEEEEeCCC
Confidence 0000 0011233456666765321 14668888 9999 999998 899999999999999
Q ss_pred CCcccCCchhhhceeEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~ 151 (163)
+| ||+..+..+..+.
T Consensus 170 ~~---LD~~~~~~l~~~l 184 (500)
T TIGR02633 170 SS---LTEKETEILLDII 184 (500)
T ss_pred CC---CCHHHHHHHHHHH
Confidence 99 9998887765443
No 235
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.8e-22 Score=149.70 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=89.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccc---------cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPL---------EK 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~---------~~ 63 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++.... ........+.... ..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSI 102 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcH
Confidence 589999999999999999999999999999863 599999998764211 1111111110000 00
Q ss_pred cCC-----ceecC-C---CCceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 64 KAG-----RNFGP-P---GNKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 64 ~~~-----~~~~~-~---~~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
... ...+. . ..+.+..+++.+++.. .....++.+.+| |+|+ +||+++ +++.+|+++++||
T Consensus 103 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDE 174 (258)
T PRK14241 103 RDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGL-----SGGQ---QQRLCIARAIAVEPDVLLMDE 174 (258)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcC
Confidence 000 00000 0 0111223444555531 111225667777 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~ 151 (163)
|++| ||+.....+..++
T Consensus 175 Pt~~---LD~~~~~~l~~~l 191 (258)
T PRK14241 175 PCSA---LDPISTLAIEDLI 191 (258)
T ss_pred CCcc---CCHHHHHHHHHHH
Confidence 9999 9988776664443
No 236
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.1e-21 Score=149.24 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=90.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~- 68 (163)
+||++++|++++|+||||||||||+++++|.++ .|+|.++|.++.... ........+...... ....+
T Consensus 38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 117 (267)
T PRK14235 38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIY 117 (267)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHH
Confidence 589999999999999999999999999999863 499999998775321 111111111100000 00000
Q ss_pred ----ecC-------C---CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 69 ----FGP-------P---GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 69 ----~~~-------~---~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
++. . ..+++..+++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++||
T Consensus 118 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgGq---~qrv~laral~~~p~lllLDE 189 (267)
T PRK14235 118 ENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL-----SGGQ---QQRLCIARAIAVSPEVILMDE 189 (267)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 000 0 01112234455555321 11124556777 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~ 151 (163)
|+++ ||+..++.+..++
T Consensus 190 Pt~~---LD~~~~~~l~~~L 206 (267)
T PRK14235 190 PCSA---LDPIATAKVEELI 206 (267)
T ss_pred CCcC---CCHHHHHHHHHHH
Confidence 9999 9998876664443
No 237
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=5.1e-22 Score=151.55 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=89.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhcccccc---C----Cce--ec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKPLEKK---A----GRN--FG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~--~~ 70 (163)
+||.|++||+++|+||||||||||+++++|.+++ |+|+++|.++........... +....... . .++ ++
T Consensus 23 isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~-i~~v~q~~~lf~~tv~~nl~~~~ 101 (275)
T cd03289 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKA-FGVIPQKVFIFSGTFRKNLDPYG 101 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhh-EEEECCCcccchhhHHHHhhhcc
Confidence 5899999999999999999999999999998654 999999988764432222111 11000000 0 000 11
Q ss_pred CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHH------HHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQ------YMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~------~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
....+++...++.+++.... ++.+..+-.. -+|+|+ +|++++ +++.+|+++++|||+++ ||+.
T Consensus 102 ~~~~~~~~~~l~~~gL~~~~---~~~p~~l~~~~~~~g~~LS~G~---~qrl~LaRall~~p~illlDEpts~---LD~~ 172 (275)
T cd03289 102 KWSDEEIWKVAEEVGLKSVI---EQFPGQLDFVLVDGGCVLSHGH---KQLMCLARSVLSKAKILLLDEPSAH---LDPI 172 (275)
T ss_pred CCCHHHHHHHHHHcCCHHHH---HhCcccccceecCCCCCCCHHH---HHHHHHHHHHhcCCCEEEEECcccc---CCHH
Confidence 11111222333444443211 3333330000 039999 999998 99999999999999999 9988
Q ss_pred hhhceeEEEE
Q psy2657 143 LQRHFYVFAL 152 (163)
Q Consensus 143 ~~~~~~~~~l 152 (163)
..+.+..++.
T Consensus 173 ~~~~l~~~l~ 182 (275)
T cd03289 173 TYQVIRKTLK 182 (275)
T ss_pred HHHHHHHHHH
Confidence 7765544433
No 238
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.80 E-value=2.4e-22 Score=151.56 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=89.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc--CC--CCCeeeeeeeecCCCCHHHHHHHH----hc-----------cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS--LP--PETYALTSVPFNFYTSSEMLQKVL----EK-----------PL 61 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~--~~--~g~i~~~~~~~~~~~~~~~~~~~~----~~-----------~~ 61 (163)
+||++++||+++|+||||||||||+++|+|. ++ .|++.++|.++............+ .. .+
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l 105 (252)
T CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFL 105 (252)
T ss_pred ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHH
Confidence 5899999999999999999999999999996 33 499999998775433221111000 00 00
Q ss_pred cccCC--c-eecCCC------CceEEEEEecCCCCCCcCCCCCCHHH-HHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 62 EKKAG--R-NFGPPG------NKTMIYFVDDMNMPEVDAYGTVQPHT-VIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 62 ~~~~~--~-~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~~~e-llr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
..... . ...... .+++...++.++++.. ..++.+.+ + |+|+ +||+++ +++.+|+++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~L-----SgG~---~qrv~la~al~~~p~llll 175 (252)
T CHL00131 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS--FLSRNVNEGF-----SGGE---KKRNEILQMALLDSELAIL 175 (252)
T ss_pred HHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh--hhccccccCC-----CHHH---HHHHHHHHHHHcCCCEEEE
Confidence 00000 0 000000 0111233455565421 11445553 7 9999 999998 99999999999
Q ss_pred ecCCCCcccCCchhhhceeEEEEc
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
|||++| ||+..++.+..++..
T Consensus 176 DEPt~~---LD~~~~~~l~~~l~~ 196 (252)
T CHL00131 176 DETDSG---LDIDALKIIAEGINK 196 (252)
T ss_pred cCCccc---CCHHHHHHHHHHHHH
Confidence 999999 998887766544433
No 239
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.4e-21 Score=158.34 Aligned_cols=139 Identities=12% Similarity=0.183 Sum_probs=93.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC---CCCeeeeeeeecCCCCHHHHHHHHhc------------cccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP---PETYALTSVPFNFYTSSEMLQKVLEK------------PLEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 65 (163)
+||++++||+++|+||||||||||+|+++|.++ .|+|.++|.++.........+..+.. .+....
T Consensus 281 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e 360 (506)
T PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGK 360 (506)
T ss_pred eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHH
Confidence 589999999999999999999999999999864 49999999876533211111110000 000000
Q ss_pred Cceec------C----C---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 66 GRNFG------P----P---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 66 ~~~~~------~----~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
...++ . . ..+++..+++.+++... ..++++.+| |+|| +||+++ +++.+|+++++|
T Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgG~---kqrv~lA~al~~~p~lllLD 430 (506)
T PRK13549 361 NITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA--SPELAIARL-----SGGN---QQKAVLAKCLLLNPKILILD 430 (506)
T ss_pred HhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC--CcccccccC-----CHHH---HHHHHHHHHHhhCCCEEEEc
Confidence 00000 0 0 00123345666777421 126778899 9999 999998 899999999999
Q ss_pred cCCCCcccCCchhhhceeEEEE
Q psy2657 131 NPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~~~l 152 (163)
|||+| ||+..++.+..++.
T Consensus 431 EPt~~---LD~~~~~~l~~~l~ 449 (506)
T PRK13549 431 EPTRG---IDVGAKYEIYKLIN 449 (506)
T ss_pred CCCCC---cCHhHHHHHHHHHH
Confidence 99999 99988877654443
No 240
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=1.2e-20 Score=157.30 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=87.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh--ccccccC-----CceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE--KPLEKKA-----GRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~ 71 (163)
+||.+++||.++|+||||||||||++.++|.++| |+|.++|.+++..+.....+.+.. .....+. +..++.
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 441 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR 441 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCC
Confidence 5899999999999999999999999999999876 999999999876654433322111 0000000 011111
Q ss_pred C---CCceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 72 P---GNKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 72 ~---~~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+ ..+++...++..++ |+ .+......-.+| |+|| |||+++ +++.+|+++++||||++
T Consensus 442 ~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L-----SGGq---rQRi~LARall~~~~ililDEptsa--- 510 (582)
T PRK11176 442 TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL-----SGGQ---RQRIAIARALLRDSPILILDEATSA--- 510 (582)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC-----CHHH---HHHHHHHHHHHhCCCEEEEECcccc---
Confidence 1 11111112222221 11 011001112346 9999 999999 99999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 511 LD~~t~~~i~ 520 (582)
T PRK11176 511 LDTESERAIQ 520 (582)
T ss_pred CCHHHHHHHH
Confidence 9987765543
No 241
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.3e-21 Score=145.76 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=94.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHH---Hhccccc-----------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKV---LEKPLEK-----------K 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------~ 64 (163)
+||.|.+|++++++|||||||||++|++.|.+.| |+|.++|...-... ....+.+ +...... .
T Consensus 43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~-~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v 121 (325)
T COG4586 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR-EEYLRSIGLVMGQKLQLWWDLPALDSLEV 121 (325)
T ss_pred eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH-HHHHHHHHHHhhhhheeeeechhhhhHHH
Confidence 6899999999999999999999999999999655 99999986532211 1111111 1111000 0
Q ss_pred CCceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 65 AGRNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 65 ~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
.+.+|.-+ ..++...+.+.+++...- .++++.+ |-|| |-|+.+ +++++|+++++||||-| |
T Consensus 122 ~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l---k~~vr~L-----SlGq---RmraeLaaaLLh~p~VLfLDEpTvg---L 187 (325)
T COG4586 122 LKLIYEIPDDEFAERLDFLTEILDLEGFL---KWPVRKL-----SLGQ---RMRAELAAALLHPPKVLFLDEPTVG---L 187 (325)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcchhhh---hhhhhhc-----cchH---HHHHHHHHHhcCCCcEEEecCCccC---c
Confidence 00111111 123333444445554333 6778888 9999 988877 99999999999999999 9
Q ss_pred CchhhhceeEEEEcCCcccc
Q psy2657 140 EPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~ 159 (163)
|-..+..++.+.-.+.....
T Consensus 188 DV~aq~~ir~Flke~n~~~~ 207 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQ 207 (325)
T ss_pred chhHHHHHHHHHHHHHHhhC
Confidence 97776655554444443333
No 242
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.79 E-value=8.8e-22 Score=148.14 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=85.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CC--CCeeeeeeeecCCCCHHHHHHHHhcccccc------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKK------------ 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 64 (163)
+||.+++|++++|+||||||||||+++++|.. +| |++.++|.++............+.......
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 99 (248)
T PRK09580 20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFL 99 (248)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHH
Confidence 58899999999999999999999999999983 33 999999977644332221111110000000
Q ss_pred ---CCce--ecCC---C----CceEEEEEecCCCCCCcCCCCCCHH-HHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 65 ---AGRN--FGPP---G----NKTMIYFVDDMNMPEVDAYGTVQPH-TVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 65 ---~~~~--~~~~---~----~~~~~~~l~~~~l~~~~~~~~~~~~-ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
...+ +... . .+.+...++.++++. .+.++.+. ++ |+|+ +||+++ +++.+|+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~illL 169 (248)
T PRK09580 100 QTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE--DLLTRSVNVGF-----SGGE---KKRNDILQMAVLEPELCIL 169 (248)
T ss_pred HHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh--hhcccCCCCCC-----CHHH---HHHHHHHHHHHcCCCEEEE
Confidence 0000 0000 0 000111223333321 11133332 56 9999 999998 99999999999
Q ss_pred ecCCCCcccCCchhhhceeEE
Q psy2657 130 MNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~~~~ 150 (163)
||||++ ||+..+..+..+
T Consensus 170 DEPt~~---LD~~~~~~l~~~ 187 (248)
T PRK09580 170 DESDSG---LDIDALKIVADG 187 (248)
T ss_pred eCCCcc---CCHHHHHHHHHH
Confidence 999999 998887776543
No 243
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=1.3e-21 Score=159.02 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=87.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec-C----CCCHHHHHHHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN-F----YTSSEMLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
+||++.+|++++|+||||||||||+++++|.++| |+|.++|.+.. . ..........+..... ..+ ......
T Consensus 43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~-~~~-~~~~e~ 120 (549)
T PRK13545 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGL-MMG-LTKEKI 120 (549)
T ss_pred eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhh-hcC-CCHHHH
Confidence 5889999999999999999999999999999765 99998876421 0 0000011111100000 000 000000
Q ss_pred CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 74 NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 74 ~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
.+.+..+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++|||+++ ||+..++.+..
T Consensus 121 ~e~i~elLe~lgL~~~l---d~~~~~L-----SGGQ---rQRVaLArAL~~~P~LLLLDEPTsg---LD~~sr~~Lle 184 (549)
T PRK13545 121 KEIIPEIIEFADIGKFI---YQPVKTY-----SSGM---KSRLGFAISVHINPDILVIDEALSV---GDQTFTKKCLD 184 (549)
T ss_pred HHHHHHHHHHcCChhHh---hCCcccC-----CHHH---HHHHHHHHHHHhCCCEEEEECCccc---CCHHHHHHHHH
Confidence 11122345556664332 6678888 9999 999998 89999999999999999 99987655543
No 244
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.9e-21 Score=146.32 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=90.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-----CCCeeeeeeeecCCCCHHHHHHHHhcccc--------ccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-----PETYALTSVPFNFYTSSEMLQKVLEKPLE--------KKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-----~g~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 67 (163)
+||++.+||+++|+||||||||||+++++|.++ .|+|.++|.++....... ....+..... .....
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~~~q~~~l~~~tv~eni 99 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA-LRKNVGMVFQQPNVFVKSIYENI 99 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH-HhhhEEEEecCCccccccHHHHh
Confidence 589999999999999999999999999999852 399999998875433221 1111110000 00000
Q ss_pred eecC--------C--CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 68 NFGP--------P--GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 68 ~~~~--------~--~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
.+.. . ..+++...++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++|||++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEP~~ 171 (246)
T PRK14269 100 SYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALAL-----SGGQ---QQRLCIARALAIKPKLLLLDEPTS 171 (246)
T ss_pred hhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCcc
Confidence 0000 0 00112234555565321 11114456667 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEE
Q psy2657 135 GSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l 152 (163)
+ ||+..+..+..+..
T Consensus 172 ~---LD~~~~~~l~~~l~ 186 (246)
T PRK14269 172 A---LDPISSGVIEELLK 186 (246)
T ss_pred c---CCHHHHHHHHHHHH
Confidence 9 99888776654443
No 245
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-21 Score=147.30 Aligned_cols=141 Identities=12% Similarity=0.075 Sum_probs=89.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC-------CCCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL-------PPETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~-------~~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~-- 67 (163)
+||++++||+++|+||||||||||+++++|.. ..|+|.++|.++.... ........+...... ....
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 104 (253)
T PRK14242 25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIF 104 (253)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHH
Confidence 58999999999999999999999999999974 2499999998775311 111111111100000 0000
Q ss_pred ---ee-----cCC----CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 68 ---NF-----GPP----GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 68 ---~~-----~~~----~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.+ +.. ..+++...++.+++... ....++++.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 105 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgGq---~qrv~laral~~~p~llllDEP 176 (253)
T PRK14242 105 ENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGL-----SGGQ---QQRLCIARALAVEPEVLLMDEP 176 (253)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 00 000 01112233444555321 11124556677 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
++| ||+..+..+..++.
T Consensus 177 t~~---LD~~~~~~l~~~l~ 193 (253)
T PRK14242 177 ASA---LDPIATQKIEELIH 193 (253)
T ss_pred ccc---CCHHHHHHHHHHHH
Confidence 999 99888766654443
No 246
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.79 E-value=5.5e-21 Score=156.87 Aligned_cols=136 Identities=12% Similarity=0.186 Sum_probs=92.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC---CCCeeeeeeeecCCCCHHHHHHHHhc---c---------ccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP---PETYALTSVPFNFYTSSEMLQKVLEK---P---------LEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~ 65 (163)
+||++.+||+++|+||||||||||+|+++|.++ .|+|.++|.++............+.. . +....
T Consensus 279 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~ 358 (500)
T TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGK 358 (500)
T ss_pred ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHH
Confidence 589999999999999999999999999999965 39999999877432211111111100 0 00000
Q ss_pred Cce------e----cCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 66 GRN------F----GPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 66 ~~~------~----~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
... + .... .+++..+++.+++... ..++++.+| |+|| +||+++ +++.+|+++++|
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgGq---kqrv~la~al~~~p~lllLD 428 (500)
T TIGR02633 359 NITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA--SPFLPIGRL-----SGGN---QQKAVLAKMLLTNPRVLILD 428 (500)
T ss_pred HhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC--CccCccccC-----CHHH---HHHHHHHHHHhhCCCEEEEc
Confidence 000 0 0000 1123345666777421 126778899 9999 999998 888999999999
Q ss_pred cCCCCcccCCchhhhceeE
Q psy2657 131 NPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~ 149 (163)
|||++ ||+..++.+..
T Consensus 429 EPt~~---LD~~~~~~l~~ 444 (500)
T TIGR02633 429 EPTRG---VDVGAKYEIYK 444 (500)
T ss_pred CCCCC---cCHhHHHHHHH
Confidence 99999 99988776543
No 247
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=3.5e-22 Score=164.64 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=88.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CC--CCeeeee-----------------------eeecC-----CC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PP--ETYALTS-----------------------VPFNF-----YT 48 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~--g~i~~~~-----------------------~~~~~-----~~ 48 (163)
+||++.+|++++|+||||||||||+|+++|.+ +| |+|.+++ .++.. ..
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 98 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWN 98 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhc
Confidence 58999999999999999999999999999985 34 8888862 11100 00
Q ss_pred -CHH---HHHHHHhccccc----cC------Ccee-----cCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHh
Q psy2657 49 -SSE---MLQKVLEKPLEK----KA------GRNF-----GPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMD 106 (163)
Q Consensus 49 -~~~---~~~~~~~~~~~~----~~------~~~~-----~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s 106 (163)
... .....+...... .. ...+ +.. ..+++..+++.+++.... ++++.+| |
T Consensus 99 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S 170 (520)
T TIGR03269 99 LSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI---THIARDL-----S 170 (520)
T ss_pred cCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh---hcCcccC-----C
Confidence 000 001111000000 00 0000 000 012233456667775433 6678888 9
Q ss_pred cCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 107 YQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 107 ~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+|| |||+++ +++.+|+++++||||++ ||+...+.+..++
T Consensus 171 gGq---~qrv~iA~al~~~p~lllLDEPt~~---LD~~~~~~l~~~l 211 (520)
T TIGR03269 171 GGE---KQRVVLARQLAKEPFLFLADEPTGT---LDPQTAKLVHNAL 211 (520)
T ss_pred HHH---HHHHHHHHHHhcCCCEEEeeCCccc---CCHHHHHHHHHHH
Confidence 999 999998 99999999999999999 9998887764433
No 248
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4e-21 Score=144.93 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=89.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCC-HHHHHHHHhccccc---cCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTS-SEMLQKVLEKPLEK---KAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~-- 67 (163)
+||++.+||+++|+||||||||||+++++|..+ .|+|.++|.++..... .......+...... ....
T Consensus 24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 103 (251)
T PRK14244 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIY 103 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHH
Confidence 589999999999999999999999999999853 5999999987643211 11111111100000 0000
Q ss_pred ---eec-----CC-C----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 68 ---NFG-----PP-G----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 68 ---~~~-----~~-~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
.+. .. . .+.+..+++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++||
T Consensus 104 ~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~llllDE 175 (251)
T PRK14244 104 DNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFEL-----SGGQ---QQRLCIARAIAVKPTMLLMDE 175 (251)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeC
Confidence 000 00 0 0112234555565321 11124567778 9999 999998 8999999999999
Q ss_pred CCCCcccCCchhhhceeEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~ 151 (163)
|++| ||+..+..+..++
T Consensus 176 Pt~~---LD~~~~~~l~~~l 192 (251)
T PRK14244 176 PCSA---LDPVATNVIENLI 192 (251)
T ss_pred CCcc---CCHHHHHHHHHHH
Confidence 9999 9988777664433
No 249
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.2e-21 Score=143.88 Aligned_cols=140 Identities=17% Similarity=0.137 Sum_probs=89.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCC-HHHHHHHHhccccc--------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTS-SEMLQKVLEKPLEK--------K 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~ 64 (163)
+||++.+||+++|+||||||||||+++++|..+ .|+|.++|.++..... .......+...... .
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 102 (251)
T PRK14270 23 INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIY 102 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHH
Confidence 589999999999999999999999999999853 3999999988753211 11111111100000 0
Q ss_pred CCcee-----cCCC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGRNF-----GPPG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~~~-----~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
....+ +... .+++...++.+++.. .....++.+.++ |+|+ +|++++ +++.+|+++++|||
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEP 174 (251)
T PRK14270 103 DNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKL-----SGGQ---QQRLCIARTIAVKPDVILMDEP 174 (251)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 00000 0000 011122344444421 111224567777 9999 999998 88999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
++| ||+..++.+..++
T Consensus 175 ~~~---LD~~~~~~l~~~L 190 (251)
T PRK14270 175 TSA---LDPISTLKIEDLM 190 (251)
T ss_pred ccc---CCHHHHHHHHHHH
Confidence 999 9998877665433
No 250
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.7e-22 Score=152.11 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=87.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~-- 67 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++.... ........+...... ....
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 111 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIY 111 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHH
Confidence 589999999999999999999999999999863 399999998764211 111111111100000 0000
Q ss_pred ---eecC------C---CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 68 ---NFGP------P---GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 68 ---~~~~------~---~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.+.. . ..+++..+++.+++... ....++.+.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 112 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~lllLDEP 183 (260)
T PRK10744 112 DNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSL-----SGGQ---QQRLCIARGIAIRPEVLLLDEP 183 (260)
T ss_pred HHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCC-----CHHH---HHHHHHHHHHHCCCCEEEEcCC
Confidence 0000 0 00112233444444210 11124455666 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
+++ ||+.....+..+.
T Consensus 184 t~~---LD~~~~~~l~~~L 199 (260)
T PRK10744 184 CSA---LDPISTGRIEELI 199 (260)
T ss_pred Ccc---CCHHHHHHHHHHH
Confidence 999 9988776654433
No 251
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.79 E-value=5.1e-20 Score=134.03 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=80.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKT 76 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
+||++++||+++|+||||||||||+++++|.+ +| |++.++|.++... ..... ..|-+
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~----~~~~~----------i~~~~----- 88 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR----SFRKI----------IGYVP----- 88 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH----hhhhe----------EEEcc-----
Confidence 57999999999999999999999999999988 66 9999999876421 00000 00101
Q ss_pred EEEEEecCCCCCCcCCCCCCHHHHHH---H--HHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 77 MIYFVDDMNMPEVDAYGTVQPHTVIR---Q--YMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 77 ~~~~l~~~~l~~~~~~~~~~~~ellr---~--~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
++..+.. ...+.+.++ . -+|+|+ +||+++ +++.+|+++++|||+++ ||+..++.+..
T Consensus 89 -----q~~~~~~-----~~t~~~~i~~~~~~~~LS~G~---~qrv~laral~~~p~illlDEP~~~---LD~~~~~~l~~ 152 (194)
T cd03213 89 -----QDDILHP-----TLTVRETLMFAAKLRGLSGGE---RKRVSIALELVSNPSLLFLDEPTSG---LDSSSALQVMS 152 (194)
T ss_pred -----CcccCCC-----CCcHHHHHHHHHHhccCCHHH---HHHHHHHHHHHcCCCEEEEeCCCcC---CCHHHHHHHHH
Confidence 1111100 000111111 1 359999 999988 99999999999999999 99887766544
Q ss_pred EE
Q psy2657 150 FA 151 (163)
Q Consensus 150 ~~ 151 (163)
+.
T Consensus 153 ~l 154 (194)
T cd03213 153 LL 154 (194)
T ss_pred HH
Confidence 33
No 252
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2e-21 Score=163.34 Aligned_cols=132 Identities=16% Similarity=0.256 Sum_probs=90.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeee-eeeecCCCCHH--HH---HHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALT-SVPFNFYTSSE--ML---QKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~-~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 72 (163)
+||.|.+|++++|+||||||||||+++++|.++| |+|.+. +..+....... .+ ...+. .+. ......
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~-~~~----~~~~~~ 405 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQ-HLA----RLAPQE 405 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHH-HHH----HhCchh
Confidence 5899999999999999999999999999999765 888875 33333322210 00 00000 000 000011
Q ss_pred CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
..+.+..+++.+++.... .++++.+| |+|+ +||+++ +++.+|+++++||||++ ||+..+..+..+
T Consensus 406 ~~~~~~~~L~~~~l~~~~--~~~~~~~L-----SgGe---kqRl~La~~l~~~p~lLlLDEPt~~---LD~~~~~~l~~~ 472 (638)
T PRK10636 406 LEQKLRDYLGGFGFQGDK--VTEETRRF-----SGGE---KARLVLALIVWQRPNLLLLDEPTNH---LDLDMRQALTEA 472 (638)
T ss_pred hHHHHHHHHHHcCCChhH--hcCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCCC---CCHHHHHHHHHH
Confidence 122344566777775321 26778999 9999 999998 88899999999999999 998887665443
No 253
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=3.7e-21 Score=141.19 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=84.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||.+.+|++++|+||||||||||+++++|.++| |++.++|.++....... ....+...... ..++.....+.+.
T Consensus 27 isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~--~~~~~~tv~~~l~ 103 (207)
T cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED-LRSSLTIIPQD--PTLFSGTIRSNLD 103 (207)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHH-HHhhEEEEecC--CcccCccHHHHhc
Confidence 5789999999999999999999999999999765 99999998765332211 11111111110 0111100000010
Q ss_pred EEEecCC---CCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 79 YFVDDMN---MPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 79 ~~l~~~~---l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
+.+... +...-. .+..+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..+..+..+..
T Consensus 104 -~~~~~~~~~~~~~l~-~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEP~~~---LD~~~~~~l~~~l~ 169 (207)
T cd03369 104 -PFDEYSDEEIYGALR-VSEGGLNL-----SQGQ---RQLLCLARALLKRPRVLVLDEATAS---IDYATDALIQKTIR 169 (207)
T ss_pred -ccCCCCHHHHHHHhh-ccCCCCcC-----CHHH---HHHHHHHHHHhhCCCEEEEeCCccc---CCHHHHHHHHHHHH
Confidence 000000 000000 12334555 9999 999998 89999999999999999 99887766544333
No 254
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.7e-21 Score=143.89 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=88.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCC-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPP- 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (163)
+||++++||+++|+||||||||||+++++|..+ .|++.++|.++.........+..+....... ..+...
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~--~~~~~tv 99 (249)
T PRK14253 22 INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP--NPFPMSI 99 (249)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCC--CcCcccH
Confidence 589999999999999999999999999999865 4899999987643212222222111110000 000000
Q ss_pred --------------C----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 73 --------------G----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 73 --------------~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
. .+++...++.+++... ....+.++.++ |+|+ +||+++ +++.+|+++++||
T Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDE 171 (249)
T PRK14253 100 YENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGL-----SGGQ---QQRLCIARTIAMEPDVILMDE 171 (249)
T ss_pred HHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 0 0001112222333210 01124455666 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEEEc
Q psy2657 132 PTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~l~ 153 (163)
|++| ||+..+..+..++.+
T Consensus 172 P~~~---LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 172 PTSA---LDPIATHKIEELMEE 190 (249)
T ss_pred CCcc---CCHHHHHHHHHHHHH
Confidence 9999 998887766544433
No 255
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=1.7e-20 Score=159.17 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=89.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccCC-----ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKAG-----RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~ 70 (163)
+||++++||.++|+||||||||||+|.++|.++| |+|.++|.++...+.....+.+ ....+ .+.+ ..++
T Consensus 472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i-~~v~Q~~~lf~gTI~eNi~~~ 550 (686)
T TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL-GVVLQNGRLMSGSIFENIAGG 550 (686)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc-EEEccCCccCcccHHHHHhcC
Confidence 5899999999999999999999999999999876 9999999999876644433322 11100 0000 0111
Q ss_pred C-CCCceEEEEEecCCCCCC--------cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 71 P-PGNKTMIYFVDDMNMPEV--------DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 71 ~-~~~~~~~~~l~~~~l~~~--------~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
. ...+++...++..++.+. +......-..| |+|| |||+++ +++.+|+++++||||++ |
T Consensus 551 ~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L-----SGGQ---rQRialARAll~~p~iLiLDEpTS~---L 619 (686)
T TIGR03797 551 APLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL-----SGGQ---RQRLLIARALVRKPRILLFDEATSA---L 619 (686)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC---C
Confidence 1 111222222333332110 10001112345 9999 999999 99999999999999999 9
Q ss_pred Cchhhhcee
Q psy2657 140 EPRLQRHFY 148 (163)
Q Consensus 140 ~~~~~~~~~ 148 (163)
|+...+++.
T Consensus 620 D~~te~~i~ 628 (686)
T TIGR03797 620 DNRTQAIVS 628 (686)
T ss_pred CHHHHHHHH
Confidence 988776653
No 256
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.8e-21 Score=145.65 Aligned_cols=142 Identities=12% Similarity=0.132 Sum_probs=91.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc---CC----CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS---LP----PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~---~~----~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~-- 67 (163)
+||++++||+++|+||||||||||+++++|. .+ .|++.++|.++.... ........+...... ....
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 101 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIF 101 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHH
Confidence 5899999999999999999999999999885 23 499999998875321 111111111100000 0000
Q ss_pred ---ee-----cCC----CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 68 ---NF-----GPP----GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 68 ---~~-----~~~----~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.+ +.. ..+.+...++.+++... ....++++.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEP 173 (250)
T PRK14245 102 ENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFAL-----SGGQ---QQRLCIARAMAVSPSVLLMDEP 173 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 00 000 01122334555565321 11225567778 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEEEEc
Q psy2657 133 TSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l~ 153 (163)
++| ||+..+..+..++..
T Consensus 174 t~~---LD~~~~~~l~~~l~~ 191 (250)
T PRK14245 174 ASA---LDPISTAKVEELIHE 191 (250)
T ss_pred Ccc---CCHHHHHHHHHHHHH
Confidence 999 998887776544433
No 257
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.9e-21 Score=145.69 Aligned_cols=141 Identities=12% Similarity=0.075 Sum_probs=90.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc--------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK--------K 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~ 64 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++.... .....+..+...... .
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 102 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVY 102 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHH
Confidence 589999999999999999999999999999864 599999998764311 111111111100000 0
Q ss_pred CCc-----eecCCC----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGR-----NFGPPG----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~-----~~~~~~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
... .++... .+.+...++.+++... ....++.+.++ |+|+ +|++++ +++.+|+++++|||
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~Gq---~qr~~laral~~~p~llllDEP 174 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAF-----SGGQ---QQRICIARALAVRPKVVLLDEP 174 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhC-----CHHH---HHHHHHHHHHhcCCCEEEecCC
Confidence 000 000000 0112223444454211 11125567788 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+..++.+..++.
T Consensus 175 ~~~---LD~~~~~~l~~~l~ 191 (251)
T PRK14251 175 TSA---LDPISSSEIEETLM 191 (251)
T ss_pred Ccc---CCHHHHHHHHHHHH
Confidence 999 99988776654443
No 258
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.8e-21 Score=148.42 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=88.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC-------CCCCeeeeeeeecCCC-CHHHHHHHHhcccccc---CCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL-------PPETYALTSVPFNFYT-SSEMLQKVLEKPLEKK---AGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~-------~~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~- 68 (163)
+||++.+||+++|+||||||||||++++.|.. ..|+|.++|.++.... ........+....... ...+
T Consensus 58 vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 137 (286)
T PRK14275 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIF 137 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHH
Confidence 57899999999999999999999999999963 3499999998764321 1111111111000000 0000
Q ss_pred ----e-----cCCC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 69 ----F-----GPPG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 69 ----~-----~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
+ +... .+.+..+++.+++.. .....+..+.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----SgGq---~qrv~LAraL~~~p~lllLDEP 209 (286)
T PRK14275 138 DNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL-----SGGQ---QQRLCVARTLAVEPEILLLDEP 209 (286)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 0 0000 011122333444321 111225567788 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
++| ||+.....+..++
T Consensus 210 t~g---LD~~~~~~l~~~L 225 (286)
T PRK14275 210 TSA---LDPKATAKIEDLI 225 (286)
T ss_pred Ccc---CCHHHHHHHHHHH
Confidence 999 9988776664433
No 259
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.4e-21 Score=143.48 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-------CCeeeeeeeecCCC-CHHHHHHHHhcccccc---CC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-------ETYALTSVPFNFYT-SSEMLQKVLEKPLEKK---AG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-------g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~--- 66 (163)
+||++.+|++++|+||||||||||+++++|.++| |+|.++|.++.... ........+....... ..
T Consensus 23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 102 (251)
T PRK14249 23 INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF 102 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHH
Confidence 5789999999999999999999999999999764 89999998764311 1111111110000000 00
Q ss_pred --cee-----cCCC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 67 --RNF-----GPPG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 67 --~~~-----~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..+ +... .+.+...++.+++.. ...+.++.+.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~lllLDEP 174 (251)
T PRK14249 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLAL-----SGGQ---QQRLCIARVLAIEPEVILMDEP 174 (251)
T ss_pred HHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 000 0000 001111222233321 111224556677 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+.....+..+..
T Consensus 175 t~~---LD~~~~~~l~~~l~ 191 (251)
T PRK14249 175 CSA---LDPVSTMRIEELMQ 191 (251)
T ss_pred Ccc---CCHHHHHHHHHHHH
Confidence 999 99888776654433
No 260
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.78 E-value=1.3e-22 Score=139.54 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=83.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCCc-eecCCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAGR-NFGPPGN 74 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 74 (163)
+|+.+++|++++|+||||||||||+++++|..++ |.+.+++.++.... .......+...... .... +......
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~tv~~~~~~ 82 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-IEELRRRIGYVPQDPQLFPGLTVRENESD 82 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-HHHHHHTEEEEESSHCHHTTSBHHHHHHH
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999765 89999998887722 11122111110000 0000 0000011
Q ss_pred ceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 75 KTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 75 ~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
++...+++.+++... +...++.+.++ |+|+ +||+++ +++.+|+++++||||+
T Consensus 83 ~~~~~~l~~l~~~~~~~~~~~~~~~~L-----S~Ge---~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 83 ERIEEVLKKLGLEDLLDRKIGQRASSL-----SGGE---KQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHTTHGGGTGSBGTSCGGGS-----CHHH---HHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccchh-----hHHH---HHHHHHHHHHHcCCCEEEEeCCCC
Confidence 233445566665442 22224445888 9999 999998 9999999999999985
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.78 E-value=1.7e-21 Score=160.60 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=92.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeee-eee---ecCCCCH--HHHHHHHhcccc---------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALT-SVP---FNFYTSS--EMLQKVLEKPLE---------K 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~-~~~---~~~~~~~--~~~~~~~~~~~~---------~ 63 (163)
+||.+++||+++|+||||||||||+++++|.++| |+|.++ |.+ +...... ......+..... .
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 382 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcH
Confidence 5799999999999999999999999999999765 899885 432 2211100 011111100000 0
Q ss_pred cCCce--e--cCC---CCceEEEEEecCCCCCC--cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 64 KAGRN--F--GPP---GNKTMIYFVDDMNMPEV--DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 64 ~~~~~--~--~~~---~~~~~~~~l~~~~l~~~--~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..... + ... ..+++..+++.+++... +.+.++++.+| |+|| +||+++ +++.+|+++++|||
T Consensus 383 ~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L-----SgGq---~qrv~laral~~~p~lLllDEP 454 (520)
T TIGR03269 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDEL-----SEGE---RHRVALAQVLIKEPRIVILDEP 454 (520)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 00000 0 000 01123456677787542 11236789999 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
|++ ||+..++.+..++.
T Consensus 455 t~~---LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 455 TGT---MDPITKVDVTHSIL 471 (520)
T ss_pred ccc---CCHHHHHHHHHHHH
Confidence 999 99988877755543
No 262
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=8.1e-21 Score=132.17 Aligned_cols=136 Identities=16% Similarity=0.287 Sum_probs=92.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHH--HhcCCCCCeeeeeeeecCCCCHHH--HHH-------HHhcc-----ccc-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKM--LSSLPPETYALTSVPFNFYTSSEM--LQK-------VLEKP-----LEK- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i--~~~~~~g~i~~~~~~~~~~~~~~~--~~~-------~~~~~-----~~~- 63 (163)
|+|..+.||.++++||||+|||||+|.+ +..++.|+..+.+..|..+..... ... .+... +..
T Consensus 21 i~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~ 100 (242)
T COG4161 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQ 100 (242)
T ss_pred eeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHH
Confidence 4678899999999999999999999954 555667999998877665443321 111 11100 000
Q ss_pred -----cCCceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 64 -----KAGRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 64 -----~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
-...+.+... ..++..++..+.+.+.. |+.|..+ |+|+ +||+++ +++.+|+++++||||
T Consensus 101 enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~a---dr~plhl-----sggq---qqrvaiaralmmkpqvllfdept 169 (242)
T COG4161 101 ENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA---DRYPLHL-----SGGQ---QQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred HHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccc---ccCceec-----ccch---hhhHHHHHHHhcCCcEEeecCcc
Confidence 0011111111 12344455566665544 7778888 9999 999999 999999999999999
Q ss_pred CCcccCCchhhhceeEE
Q psy2657 134 SGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~ 150 (163)
+. |||....+.-.+
T Consensus 170 aa---ldpeitaqvv~i 183 (242)
T COG4161 170 AA---LDPEITAQIVSI 183 (242)
T ss_pred cc---cCHHHHHHHHHH
Confidence 99 999988776433
No 263
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.8e-21 Score=144.13 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=88.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCC-c-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAG-R- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~-~- 67 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.++.... ........+...... ... .
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (252)
T PRK14256 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSI 102 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcH
Confidence 589999999999999999999999999999863 499999998774321 111111111100000 000 0
Q ss_pred ---------eecCCC----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 68 ---------NFGPPG----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 68 ---------~~~~~~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
..+... .+++...++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++||
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrl~laral~~~p~llllDE 174 (252)
T PRK14256 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMEL-----SGGQ---QQRLCIARTIAVKPEVILMDE 174 (252)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcC-----CHHH---HHHHHHHHHHhcCCCEEEEcC
Confidence 000000 0112233444554320 11124456667 9999 999998 8999999999999
Q ss_pred CCCCcccCCchhhhceeEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~ 150 (163)
|++| ||+..++.+..+
T Consensus 175 P~~g---LD~~~~~~l~~~ 190 (252)
T PRK14256 175 PASA---LDPISTLKIEEL 190 (252)
T ss_pred Cccc---CCHHHHHHHHHH
Confidence 9999 998877665443
No 264
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=7.3e-21 Score=158.83 Aligned_cols=136 Identities=17% Similarity=0.294 Sum_probs=88.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhcccc---cc-----CCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKPLE---KK-----AGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~ 71 (163)
+||.+++|+.++|+||||||||||++.++|.++. |+|.++|.++...+.....+. +....+ .+ .+..++.
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~LF~~TI~eNI~~g~ 447 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKH-LSWVGQNPQLPHGTLRDNVLLGN 447 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhh-eEEecCCCcCCCcCHHHHhhcCC
Confidence 5899999999999999999999999999999832 999999999877654443332 211110 00 0111221
Q ss_pred C--CCceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 72 P--GNKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 72 ~--~~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
+ ..+++...++..++ |+ .+......-..| |+|| |||+++ +++.+|+++++||||++ |
T Consensus 448 ~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~L-----SGGQ---rQRialARAll~~~~IliLDE~TSa---L 516 (588)
T PRK11174 448 PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL-----SVGQ---AQRLALARALLQPCQLLLLDEPTAS---L 516 (588)
T ss_pred CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC---C
Confidence 1 11122222222221 11 010001112235 9999 999999 99999999999999999 9
Q ss_pred Cchhhhcee
Q psy2657 140 EPRLQRHFY 148 (163)
Q Consensus 140 ~~~~~~~~~ 148 (163)
|+...+.+.
T Consensus 517 D~~te~~i~ 525 (588)
T PRK11174 517 DAHSEQLVM 525 (588)
T ss_pred CHHHHHHHH
Confidence 988776654
No 265
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.1e-21 Score=143.80 Aligned_cols=138 Identities=15% Similarity=0.125 Sum_probs=86.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||++++||+++|+||||||||||+++++|..+ .|+|.++|.++.... ........+...... . ..+...
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~-~-~~~~~t 99 (250)
T PRK14240 22 INLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQ-P-NPFPMS 99 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecC-C-ccCccc
Confidence 589999999999999999999999999999743 499999998875311 111111111100000 0 000000
Q ss_pred C-------------------CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 73 G-------------------NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 73 ~-------------------~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
. .+.+...++.+++.. .....++++.++ |+|+ +||+++ +++.+|+++++|
T Consensus 100 ~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllD 171 (250)
T PRK14240 100 IYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL-----SGGQ---QQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEe
Confidence 0 001111222333211 011124445566 9999 999998 999999999999
Q ss_pred cCCCCcccCCchhhhceeEEE
Q psy2657 131 NPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~~~ 151 (163)
||+++ ||+..+..+..++
T Consensus 172 EP~~~---LD~~~~~~l~~~l 189 (250)
T PRK14240 172 EPTSA---LDPISTLKIEELI 189 (250)
T ss_pred CCCcc---CCHHHHHHHHHHH
Confidence 99999 9988776664433
No 266
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.8e-21 Score=157.73 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=90.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eec--CCC-----CHHHHHHHHhcc--cc------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFN--FYT-----SSEMLQKVLEKP--LE------ 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~--~~~-----~~~~~~~~~~~~--~~------ 62 (163)
+||++++|++++|+||||||||||+|+++|.++| |++.+++. .+. .+. .......+.... ..
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 99 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQER 99 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 6899999999999999999999999999999765 88887652 121 111 000111100000 00
Q ss_pred -c---cCC-----------------ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--E
Q psy2657 63 -K---KAG-----------------RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--K 119 (163)
Q Consensus 63 -~---~~~-----------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~ 119 (163)
. ... ...+....+++..+++.++++... .++++.+| |+|| +||+++ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~L-----SgGq---~qrv~lA~a 169 (530)
T PRK15064 100 DRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ--HYGLMSEV-----APGW---KLRVLLAQA 169 (530)
T ss_pred HHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH--hcCchhhc-----CHHH---HHHHHHHHH
Confidence 0 000 000001112334566777775421 14568899 9999 999998 8
Q ss_pred eecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 120 DIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 120 ~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
++.+|+++++||||++ ||+..+..+..++
T Consensus 170 L~~~p~lLlLDEPt~~---LD~~~~~~l~~~l 198 (530)
T PRK15064 170 LFSNPDILLLDEPTNN---LDINTIRWLEDVL 198 (530)
T ss_pred HhcCCCEEEEcCCCcc---cCHHHHHHHHHHH
Confidence 9999999999999999 9998887765443
No 267
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.78 E-value=4.5e-21 Score=174.57 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=97.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---- 65 (163)
+||.|++||+++|+||||||||||+|+++|.++| |++.++|.++... ....+..+....+. ..
T Consensus 1958 ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l 2035 (2272)
T TIGR01257 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--ISDVHQNMGYCPQFDAIDDLLTGREHLYL 2035 (2272)
T ss_pred eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--HHHHhhhEEEEeccccCCCCCCHHHHHHH
Confidence 5899999999999999999999999999999765 9999999887431 11111111111100 00
Q ss_pred -CceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 -GRNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 -~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
....+... .+.+..+++.+++.+.. ++++.++ |+|+ |||+++ |++.+|+++++|||++| |
T Consensus 2036 ~a~l~g~~~~~~~~~v~~lLe~lgL~~~~---dk~~~~L-----SGGq---KqRLslA~ALi~~P~VLLLDEPTsG---L 2101 (2272)
T TIGR01257 2036 YARLRGVPAEEIEKVANWSIQSLGLSLYA---DRLAGTY-----SGGN---KRKLSTAIALIGCPPLVLLDEPTTG---M 2101 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCCC---C
Confidence 00011111 11223456667775433 7788999 9999 999988 99999999999999999 9
Q ss_pred CchhhhceeEEEEcC
Q psy2657 140 EPRLQRHFYVFALRL 154 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~ 154 (163)
||..++.+..++...
T Consensus 2102 Dp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSI 2116 (2272)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999998887655543
No 268
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=8.3e-20 Score=132.71 Aligned_cols=115 Identities=14% Similarity=0.269 Sum_probs=78.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC----CCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL----PPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKT 76 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~----~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
+||++++||+++|+||||||||||+++++|.. ..|++.++|.++. ......+ .|-+.
T Consensus 26 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~~~~~i----------~~~~q---- 86 (192)
T cd03232 26 ISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KNFQRST----------GYVEQ---- 86 (192)
T ss_pred cEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HHhhhce----------EEecc----
Confidence 57899999999999999999999999999964 2499999988764 1111000 01000
Q ss_pred EEEEEecCCCCCCcCCCCCCHHHHHHH-----HHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 77 MIYFVDDMNMPEVDAYGTVQPHTVIRQ-----YMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 77 ~~~~l~~~~l~~~~~~~~~~~~ellr~-----~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
+..+.. ...+.+.+.. -+|+|+ +||+++ +++.+|+++++|||+++ +|+..+..+..
T Consensus 87 ------~~~~~~-----~~tv~~~l~~~~~~~~LSgGe---~qrv~la~al~~~p~vlllDEP~~~---LD~~~~~~l~~ 149 (192)
T cd03232 87 ------QDVHSP-----NLTVREALRFSALLRGLSVEQ---RKRLTIGVELAAKPSILFLDEPTSG---LDSQAAYNIVR 149 (192)
T ss_pred ------cCcccc-----CCcHHHHHHHHHHHhcCCHHH---hHHHHHHHHHhcCCcEEEEeCCCcC---CCHHHHHHHHH
Confidence 000000 0011111110 249999 999998 99999999999999999 99887776654
Q ss_pred EE
Q psy2657 150 FA 151 (163)
Q Consensus 150 ~~ 151 (163)
++
T Consensus 150 ~l 151 (192)
T cd03232 150 FL 151 (192)
T ss_pred HH
Confidence 43
No 269
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.2e-21 Score=146.11 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=88.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~- 68 (163)
+||++++||+++|+||||||||||+++++|.++ .|++.++|.++.... .....+..+...... ....+
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 110 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIF 110 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHH
Confidence 578999999999999999999999999999864 499999998764211 111111111100000 00000
Q ss_pred ----ecC-----CC----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 69 ----FGP-----PG----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 69 ----~~~-----~~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
+.. .. .+++..+++.+++... ....+..+.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L-----S~Gq---~qrv~laral~~~p~llllDEP 182 (259)
T PRK14274 111 DNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSL-----SGGQ---QQRLCIARALATNPDVLLMDEP 182 (259)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCC
Confidence 000 00 0111123334444211 11124556677 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
++| ||+..+..+..++
T Consensus 183 t~~---LD~~~~~~l~~~l 198 (259)
T PRK14274 183 TSA---LDPVSTRKIEELI 198 (259)
T ss_pred ccc---CCHHHHHHHHHHH
Confidence 999 9988776664433
No 270
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.4e-21 Score=145.43 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=87.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhcccccc---CCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEKK---AGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~- 68 (163)
+||++.+||+++|+||||||||||+++++|..+ .|++.++|.++.... ........+....... ...+
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 104 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIY 104 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHH
Confidence 578999999999999999999999999999742 499999998875421 1111111111000000 0000
Q ss_pred ----ecC-----CC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 69 ----FGP-----PG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 69 ----~~~-----~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
+.. .. .+.+..+++.+++.. .....++.+.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 105 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEP 176 (253)
T PRK14261 105 ENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSL-----SGGQ---QQRLCIARTLAVNPEVILMDEP 176 (253)
T ss_pred HHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 000 00 001112223333321 111124556677 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
++| ||+..+..+..++.
T Consensus 177 ~~g---LD~~~~~~l~~~l~ 193 (253)
T PRK14261 177 CSA---LDPIATAKIEDLIE 193 (253)
T ss_pred ccc---CCHHHHHHHHHHHH
Confidence 999 99888776654433
No 271
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.1e-21 Score=143.94 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=86.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCC-ce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAG-RN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~-~~ 68 (163)
+||++++||+++|+||||||||||+++++|.++ .|+|.++|.+++... ........+...... ... .+
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 102 (252)
T PRK14272 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSV 102 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCH
Confidence 589999999999999999999999999999863 399999998775311 111111111000000 000 00
Q ss_pred ----------ecCCCC----ceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 69 ----------FGPPGN----KTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 69 ----------~~~~~~----~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
.+.... +.+...++.+++.. .....+.++.+| |+|+ +||+++ +++.+|+++++||
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDE 174 (252)
T PRK14272 103 FDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGL-----SGGQ---QQRLCIARALAVEPEILLMDE 174 (252)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeC
Confidence 000000 00111112222210 011124557777 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~ 151 (163)
|+++ ||+..+..+..+.
T Consensus 175 P~~~---LD~~~~~~l~~~l 191 (252)
T PRK14272 175 PTSA---LDPASTARIEDLM 191 (252)
T ss_pred CCcc---CCHHHHHHHHHHH
Confidence 9999 9988877665443
No 272
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=4e-21 Score=145.25 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=82.8
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCee-----------eeeeeecCCCCHHHHHHHH--h---ccccccC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYA-----------LTSVPFNFYTSSEMLQKVL--E---KPLEKKA 65 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~-----------~~~~~~~~~~~~~~~~~~~--~---~~~~~~~ 65 (163)
.+.+||+++|+||||||||||+++++|.++| |+|. ++|.++..... ......+ . .......
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ 100 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT-KLLEGDVKVIVKPQYVDLIP 100 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH-HhhhcccceeeecchhccCc
Confidence 3799999999999999999999999999876 8875 45554432110 0000000 0 0000000
Q ss_pred ----Cc----eecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 66 ----GR----NFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 66 ----~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
.. .......+....+++.+++.... ++.+.++ |+|+ +|++++ +++.+|+++++|||+++
T Consensus 101 ~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----S~G~---~qrv~laral~~~p~illlDEPts~ 169 (255)
T cd03236 101 KAVKGKVGELLKKKDERGKLDELVDQLELRHVL---DRNIDQL-----SGGE---LQRVAIAAALARDADFYFFDEPSSY 169 (255)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEECCCCC
Confidence 00 00001112233455666665432 6678888 9999 999998 88899999999999999
Q ss_pred cccCCchhhhce
Q psy2657 136 SFTIEPRLQRHF 147 (163)
Q Consensus 136 ~~~l~~~~~~~~ 147 (163)
||+..++.+
T Consensus 170 ---LD~~~~~~l 178 (255)
T cd03236 170 ---LDIKQRLNA 178 (255)
T ss_pred ---CCHHHHHHH
Confidence 998865544
No 273
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.5e-21 Score=152.50 Aligned_cols=136 Identities=18% Similarity=0.330 Sum_probs=93.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHH--HhccccccC-----CceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKV--LEKPLEKKA-----GRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~ 71 (163)
+||++++||.++|+|+|||||||+++.+.|.++| |++.++|.++...++....+.+ +.+....+. +.....
T Consensus 357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~ 436 (573)
T COG4987 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN 436 (573)
T ss_pred cceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC
Confidence 6899999999999999999999999999998665 9999999999888775443332 111111110 000111
Q ss_pred C--CCceEEEEEecCCCCCCc--------CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 72 P--GNKTMIYFVDDMNMPEVD--------AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 72 ~--~~~~~~~~l~~~~l~~~~--------~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
+ ..+.+...++.+++.+.- .|....-..+ |||| ++|+++ ++++|.+++++||||.| |
T Consensus 437 ~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~L-----SGGE---~rRLAlAR~LL~dapl~lLDEPTeg---L 505 (573)
T COG4987 437 PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL-----SGGE---RRRLALARALLHDAPLWLLDEPTEG---L 505 (573)
T ss_pred CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcC-----CchH---HHHHHHHHHHHcCCCeEEecCCccc---C
Confidence 1 123344555555553321 1212222334 9999 999999 88999999999999999 9
Q ss_pred Cchhhhce
Q psy2657 140 EPRLQRHF 147 (163)
Q Consensus 140 ~~~~~~~~ 147 (163)
|+..-+.+
T Consensus 506 D~~TE~~v 513 (573)
T COG4987 506 DPITERQV 513 (573)
T ss_pred ChhhHHHH
Confidence 98776654
No 274
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.78 E-value=5.6e-21 Score=173.98 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=99.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--- 66 (163)
+||.+.+||+++|+||||||||||+++++|.++| |++.++|.++... ....+..+.... .....
T Consensus 949 lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~--~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f 1026 (2272)
T TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN--LDAVRQSLGMCPQHNILFHHLTVAEHILF 1026 (2272)
T ss_pred eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch--HHHHhhcEEEEecCCcCCCCCCHHHHHHH
Confidence 5889999999999999999999999999999765 9999999887431 111111111100 00000
Q ss_pred --ceecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
...+.. ..+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++||||+| |
T Consensus 1027 ~~~lkg~~~~~~~~~v~~lL~~vgL~~~~---~~~~~~L-----SGGq---KQRLsLArALi~~PkVLLLDEPTSG---L 1092 (2272)
T TIGR01257 1027 YAQLKGRSWEEAQLEMEAMLEDTGLHHKR---NEEAQDL-----SGGM---QRKLSVAIAFVGDAKVVVLDEPTSG---V 1092 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECCCcC---C
Confidence 001111 112344567778886554 7789999 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEEcC
Q psy2657 140 EPRLQRHFYVFALRL 154 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~ 154 (163)
|+..++.+..++.+.
T Consensus 1093 Dp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1093 DPYSRRSIWDLLLKY 1107 (2272)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999998876655554
No 275
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.5e-20 Score=130.50 Aligned_cols=104 Identities=22% Similarity=0.325 Sum_probs=78.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+++++.+|++++|+||||||||||++++.|.+++ |++.+++.++...... ..+.. ..|-+.
T Consensus 18 ~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~-~~~~~----------i~~~~q------ 80 (157)
T cd00267 18 VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE-ELRRR----------IGYVPQ------ 80 (157)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHH-HHHhc----------eEEEee------
Confidence 4789999999999999999999999999998765 8999998776443111 11100 000000
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+ |+|+ ++++++ +++.+|+++++|||+++ +|+.....+..+...
T Consensus 81 ---------------------l-----S~G~---~~r~~l~~~l~~~~~i~ilDEp~~~---lD~~~~~~l~~~l~~ 125 (157)
T cd00267 81 ---------------------L-----SGGQ---RQRVALARALLLNPDLLLLDEPTSG---LDPASRERLLELLRE 125 (157)
T ss_pred ---------------------C-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCcC---CCHHHHHHHHHHHHH
Confidence 3 9999 999988 88999999999999999 998887766544443
No 276
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=8.4e-21 Score=143.06 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=89.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhcccccc---CCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEKK---AGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~-- 67 (163)
+||++++||+++|+||||||||||+++|+|.++ .|++.++|.++.... ........+....... ...
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 101 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIY 101 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHH
Confidence 589999999999999999999999999999854 399999998765321 1111111111000000 000
Q ss_pred ---ee-----cCCC----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 68 ---NF-----GPPG----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 68 ---~~-----~~~~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.+ +... .+.+...++.+++... ....+..+.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~Gq---~qr~~la~al~~~p~llllDEP 173 (250)
T PRK14262 102 DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRL-----SGGQ---QQRLCIARALAVEPEVILLDEP 173 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhc-----CHHH---HHHHHHHHHHhCCCCEEEEeCC
Confidence 00 0000 0011223344444221 11225567777 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+..+..+..++.
T Consensus 174 ~~~---LD~~~~~~l~~~l~ 190 (250)
T PRK14262 174 TSA---LDPIATQRIEKLLE 190 (250)
T ss_pred ccc---cCHHHHHHHHHHHH
Confidence 999 99888766654443
No 277
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.7e-21 Score=146.95 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=85.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||++++||+++|+||||||||||+++++|.++ .|++.++|.++.... ........+...... . ..+...
T Consensus 29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~-~-~~~~~t 106 (264)
T PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQK-P-NPFPKS 106 (264)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccC-C-cccccc
Confidence 589999999999999999999999999999743 499999998764211 111111111100000 0 000000
Q ss_pred -----------------CCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 73 -----------------GNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 73 -----------------~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..+++...++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 107 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----SgGq---~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 107 IYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSL-----SGGQ---QQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred HHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 00001111222232110 11124456666 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
+++ ||+..+..+..++
T Consensus 179 t~~---LD~~~~~~l~~~L 194 (264)
T PRK14243 179 CSA---LDPISTLRIEELM 194 (264)
T ss_pred Ccc---CCHHHHHHHHHHH
Confidence 999 9988876664443
No 278
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.5e-21 Score=149.79 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=88.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~- 68 (163)
+||.+++||+++|+||||||||||+++++|.++ .|+|.++|.++.... ........+...... ....+
T Consensus 58 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 137 (285)
T PRK14254 58 VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIY 137 (285)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHH
Confidence 589999999999999999999999999999863 499999998764321 111111111000000 00000
Q ss_pred ----e-----cC--CCCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 69 ----F-----GP--PGNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 69 ----~-----~~--~~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
+ +. ...+++..+++.+++... ....++++.+| |+|+ +||+++ +++.+|+++++|||++
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L-----SgGe---~qrv~LAraL~~~p~lLLLDEPts 209 (285)
T PRK14254 138 DNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDL-----SGGQ---QQRLCIARAIAPDPEVILMDEPAS 209 (285)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCCC
Confidence 0 00 001122234445555321 11225567778 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEE
Q psy2657 135 GSFTIEPRLQRHFYVF 150 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~ 150 (163)
| ||+..+..+..+
T Consensus 210 ~---LD~~~~~~l~~~ 222 (285)
T PRK14254 210 A---LDPVATSKIEDL 222 (285)
T ss_pred C---CCHHHHHHHHHH
Confidence 9 998877655433
No 279
>PRK13409 putative ATPase RIL; Provisional
Probab=99.78 E-value=8.9e-22 Score=163.88 Aligned_cols=131 Identities=9% Similarity=0.110 Sum_probs=89.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCH------HHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSS------EMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||++.+||+++|+||||||||||+|+++|.++| |++.++ ..++..+.. ......+..... .+.
T Consensus 358 ~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~-----~~~-- 429 (590)
T PRK13409 358 EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITD-----DLG-- 429 (590)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhh-----hcC--
Confidence 4788999999999999999999999999999766 777664 233221110 011111110000 000
Q ss_pred CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
.......+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++||||++ ||+..+..+..+
T Consensus 430 ~~~~~~~~L~~l~l~~~~---~~~~~~L-----SGGe---~QRvaiAraL~~~p~llLLDEPt~~---LD~~~~~~l~~~ 495 (590)
T PRK13409 430 SSYYKSEIIKPLQLERLL---DKNVKDL-----SGGE---LQRVAIAACLSRDADLYLLDEPSAH---LDVEQRLAVAKA 495 (590)
T ss_pred hHHHHHHHHHHCCCHHHH---hCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC---CCHHHHHHHHHH
Confidence 011223456667775433 7889999 9999 999998 88999999999999999 998877665544
Q ss_pred EEc
Q psy2657 151 ALR 153 (163)
Q Consensus 151 ~l~ 153 (163)
+.+
T Consensus 496 l~~ 498 (590)
T PRK13409 496 IRR 498 (590)
T ss_pred HHH
Confidence 433
No 280
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=9.7e-21 Score=144.63 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=87.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||.+++||+++|+||||||||||+++++|.++ .|++.++|.++.... ........+...... ...+...
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~--~~l~~~t 116 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQR--PNPFPKS 116 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccC--Ccccccc
Confidence 589999999999999999999999999999853 499999998764311 111111111000000 0000000
Q ss_pred -----------------CCceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 73 -----------------GNKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 73 -----------------~~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..+.+...++.+++.. .....++++.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 117 v~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----SgGq---~qrv~LAraL~~~p~lllLDEP 188 (274)
T PRK14265 117 IYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTAL-----SGGQ---QQRLCIARAIAMKPDVLLMDEP 188 (274)
T ss_pred HHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccC-----CHHH---HHHHHHHHHHhhCCCEEEEeCC
Confidence 0000111122223311 011124556677 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEEc
Q psy2657 133 TSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+++ ||+..+..+..+...
T Consensus 189 t~~---LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 189 CSA---LDPISTRQVEELCLE 206 (274)
T ss_pred ccc---CCHHHHHHHHHHHHH
Confidence 999 998888776554443
No 281
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=1.8e-21 Score=137.87 Aligned_cols=139 Identities=16% Similarity=0.256 Sum_probs=96.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH---HHHHH-----------------h
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM---LQKVL-----------------E 58 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~---~~~~~-----------------~ 58 (163)
+||++++|+.++++|.||||||||+|++.|.++| |++.+++.+....+.... .++++ +
T Consensus 32 vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd 111 (267)
T COG4167 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD 111 (267)
T ss_pred eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhc
Confidence 6899999999999999999999999999999877 999999987654433222 22222 2
Q ss_pred ccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 59 KPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.++...... -.....+++..-+..+|+-... ...+|..+ +.|+ |||+++ |++.+|++|++||..++
T Consensus 112 ~PL~l~T~~-~~~~R~~~i~~TL~~VGL~Pdh--an~~~~~l-----a~~Q---KQRVaLARALIL~P~iIIaDeAl~~- 179 (267)
T COG4167 112 FPLRLNTDL-EPEQRRKQIFETLRMVGLLPDH--ANYYPHML-----APGQ---KQRVALARALILRPKIIIADEALAS- 179 (267)
T ss_pred chhhhcccC-ChHHHHHHHHHHHHHhccCccc--cccchhhc-----Cchh---HHHHHHHHHHhcCCcEEEehhhhhh-
Confidence 222111100 0011123344455566653322 14557777 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEEc
Q psy2657 137 FTIEPRLQRHFYVFALR 153 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l~ 153 (163)
||...+.++..+.++
T Consensus 180 --LD~smrsQl~NL~Le 194 (267)
T COG4167 180 --LDMSMRSQLINLMLE 194 (267)
T ss_pred --ccHHHHHHHHHHHHH
Confidence 998888776544443
No 282
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.78 E-value=6.3e-21 Score=157.44 Aligned_cols=137 Identities=18% Similarity=0.255 Sum_probs=89.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccC-----Cceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKA-----GRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~ 70 (163)
+||.+++|+.++|+||||||||||++.++|.++| |+|.++|.+++..+.....+. +..... .+. +..++
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~-i~~v~Q~~~lf~~ti~~Ni~~~ 419 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ-IAWVPQHPFLFAGTIAENIRLA 419 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh-eEEEcCCCcccCcCHHHHHhcc
Confidence 5899999999999999999999999999999776 999999999876654433322 111000 000 00111
Q ss_pred -CCC-CceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PPG-NKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~~-~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+.. .+++...++..++.+ .+.........+ |+|| |||+++ +++.+|+++++||||++
T Consensus 420 ~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~L-----SgGq---~qri~laRal~~~~~ililDE~ts~--- 488 (529)
T TIGR02857 420 RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGL-----SGGQ---AQRLALARAFLRDAPLLLLDEPTAH--- 488 (529)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc---
Confidence 111 111222222222211 111111123345 9999 999999 99999999999999999
Q ss_pred CCchhhhceeE
Q psy2657 139 IEPRLQRHFYV 149 (163)
Q Consensus 139 l~~~~~~~~~~ 149 (163)
+|+...+.+..
T Consensus 489 lD~~~~~~i~~ 499 (529)
T TIGR02857 489 LDAETEALVTE 499 (529)
T ss_pred cCHHHHHHHHH
Confidence 99888776543
No 283
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.5e-21 Score=146.11 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=87.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCCHHHHHHHHhccccc---cCCce--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAGRN-- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-- 68 (163)
+||++++||+++|+||||||||||+++|+|.++ .|+|.++|.++............+...... ....+
T Consensus 40 vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 119 (276)
T PRK14271 40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMD 119 (276)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHH
Confidence 589999999999999999999999999999865 489999998765332111111111100000 00000
Q ss_pred ---ecC-----CCC----ceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 69 ---FGP-----PGN----KTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 69 ---~~~-----~~~----~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
+.. ... +.+...++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++|||+
T Consensus 120 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L-----SgGq---~qrl~LAral~~~p~lllLDEPt 191 (276)
T PRK14271 120 NVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRL-----SGGQ---QQLLCLARTLAVNPEVLLLDEPT 191 (276)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCc
Confidence 000 000 011122344444321 01114456677 9999 999998 899999999999999
Q ss_pred CCcccCCchhhhceeE
Q psy2657 134 SGSFTIEPRLQRHFYV 149 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~ 149 (163)
++ ||+..++.+..
T Consensus 192 ~~---LD~~~~~~l~~ 204 (276)
T PRK14271 192 SA---LDPTTTEKIEE 204 (276)
T ss_pred cc---CCHHHHHHHHH
Confidence 99 99887765533
No 284
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.9e-21 Score=145.10 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=90.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCC-CCHHHHHHHHhccccc--------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFY-TSSEMLQKVLEKPLEK--------K 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~ 64 (163)
+||++++||+++|+|+||||||||+++++|.++ .|++.++|.++... .........+...... .
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 105 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIY 105 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHH
Confidence 589999999999999999999999999999864 49999999876431 1111111111100000 0
Q ss_pred CCceec-----C-C---CCceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGRNFG-----P-P---GNKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~~~~-----~-~---~~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
....+. . . ..+.....++.+++.. .....+..+.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~lllLDEP 177 (259)
T PRK14260 106 ENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGL-----SGGQ---QQRLCIARALAIKPKVLLMDEP 177 (259)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCC
Confidence 000000 0 0 0011223344444421 111225567788 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEEEEc
Q psy2657 133 TSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+++ ||+.....+..++..
T Consensus 178 t~~---LD~~~~~~l~~~l~~ 195 (259)
T PRK14260 178 CSA---LDPIATMKVEELIHS 195 (259)
T ss_pred Ccc---CCHHHHHHHHHHHHH
Confidence 999 998887766544433
No 285
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=5.6e-21 Score=144.65 Aligned_cols=137 Identities=16% Similarity=0.167 Sum_probs=84.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceec--------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG-------- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (163)
+||.+++||+++|+|+||||||||+++++|.++| |++.++|.++....... ....+....... ..+.
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~-~~~~i~~v~q~~--~l~~~tv~~nl~ 116 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT-LRSRLSIILQDP--ILFSGSIRFNLD 116 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH-HhhhEEEECCCC--cccccHHHHhcC
Confidence 5789999999999999999999999999999765 99999998775433222 222111111000 0000
Q ss_pred CC--C-CceEEEEEecCCCC--------CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 71 PP--G-NKTMIYFVDDMNMP--------EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 71 ~~--~-~~~~~~~l~~~~l~--------~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.. . .......++..++. ..+...+..+.++ |+|+ +|++++ +++.+|+++++|||++|
T Consensus 117 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~L-----S~G~---~qrl~laral~~~p~llllDEPt~g-- 186 (257)
T cd03288 117 PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENF-----SVGQ---RQLFCLARAFVRKSSILIMDEATAS-- 186 (257)
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC--
Confidence 00 0 00000000001110 0011112234455 9999 999988 99999999999999999
Q ss_pred cCCchhhhceeEEE
Q psy2657 138 TIEPRLQRHFYVFA 151 (163)
Q Consensus 138 ~l~~~~~~~~~~~~ 151 (163)
||+.....+..+.
T Consensus 187 -LD~~~~~~l~~~l 199 (257)
T cd03288 187 -IDMATENILQKVV 199 (257)
T ss_pred -CCHHHHHHHHHHH
Confidence 9988876664433
No 286
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=4.2e-20 Score=153.68 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=88.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccCC-----ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKAG-----RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~ 70 (163)
+||.+++||.++|+|+||||||||++.++|.++| |+|.++|.+++..+.....+. +..... .+.+ ..++
T Consensus 351 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~~Ni~~~ 429 (571)
T TIGR02203 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ-VALVSQDVVLFNDTIANNIAYG 429 (571)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh-ceEEccCcccccccHHHHHhcC
Confidence 5889999999999999999999999999999766 999999999876654333222 111000 0000 0111
Q ss_pred C---CCCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 71 P---PGNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 71 ~---~~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
. ...+++...++.+++.+ .+......-..| |+|| |||+++ +++.+|+++++||||++
T Consensus 430 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L-----SgGq---rQRiaLARall~~~~illLDEpts~-- 499 (571)
T TIGR02203 430 RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL-----SGGQ---RQRLAIARALLKDAPILILDEATSA-- 499 (571)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc--
Confidence 1 11122222333333211 110001111235 9999 999999 99999999999999999
Q ss_pred cCCchhhhcee
Q psy2657 138 TIEPRLQRHFY 148 (163)
Q Consensus 138 ~l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 500 -LD~~~~~~i~ 509 (571)
T TIGR02203 500 -LDNESERLVQ 509 (571)
T ss_pred -CCHHHHHHHH
Confidence 9988776653
No 287
>PLN03211 ABC transporter G-25; Provisional
Probab=99.77 E-value=1.2e-20 Score=158.93 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=91.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC----CCeeeeeeeecCCCCH--------------HHHHHHHhcccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP----ETYALTSVPFNFYTSS--------------EMLQKVLEKPLE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~----g~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 62 (163)
+|+.+++||+++|+||||||||||+++++|..++ |+|.++|.+....... ....+.+.-...
T Consensus 87 vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 5889999999999999999999999999998653 8999999875321000 000111100000
Q ss_pred cc-CCceecCCCCceEEEEEecCCCCCCc--CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 63 KK-AGRNFGPPGNKTMIYFVDDMNMPEVD--AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 63 ~~-~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.. .+........+++..+++.+++.+.. ..++..+.++ |+|| |||+++ +++.+|+++++||||+|
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L-----SgGe---rqRv~ia~aL~~~P~iLlLDEPtsg-- 236 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI-----SGGE---RKRVSIAHEMLINPSLLILDEPTSG-- 236 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCc-----Chhh---hhHHHHHHHHHhCCCEEEEeCCCCC--
Confidence 00 00000000012234566777775432 1234456677 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEE
Q psy2657 138 TIEPRLQRHFYVFAL 152 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l 152 (163)
||+.....+..+..
T Consensus 237 -LD~~~~~~l~~~L~ 250 (659)
T PLN03211 237 -LDATAAYRLVLTLG 250 (659)
T ss_pred -cCHHHHHHHHHHHH
Confidence 99887766544433
No 288
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.9e-21 Score=143.31 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=86.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC---C----CCCeeeeeeeecCCC-CHHHHHHHHhcccc--------cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL---P----PETYALTSVPFNFYT-SSEMLQKVLEKPLE--------KK 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~---~----~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~ 64 (163)
+||++++||+++|+||||||||||+++++|.. + .|+|.++|.++.... ........+..... ..
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 103 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIY 103 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHH
Confidence 58999999999999999999999999999973 2 499999998764311 11111111100000 00
Q ss_pred CCce-----ecCCC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGRN-----FGPPG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~~-----~~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.... .+... .+.+...++.+++.. .....++.+.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEP 175 (252)
T PRK14239 104 ENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGL-----SGGQ---QQRVCIARVLATSPKIILLDEP 175 (252)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCC
Confidence 0000 00000 011112333444321 011124556677 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
++| ||+..+..+..++
T Consensus 176 t~~---LD~~~~~~l~~~l 191 (252)
T PRK14239 176 TSA---LDPISAGKIEETL 191 (252)
T ss_pred ccc---cCHHHHHHHHHHH
Confidence 999 9988776664433
No 289
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.77 E-value=7.9e-21 Score=161.66 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=87.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccC-----Cceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKA-----GRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~ 70 (163)
+||++++||.++|+||||||||||++.++|.++| |+|.++|.+++..+.....+.+ ....+ .+. +..++
T Consensus 498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i-~~v~Q~~~lf~gTi~eNi~l~ 576 (710)
T TIGR03796 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV-AMVDQDIFLFEGTVRDNLTLW 576 (710)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe-eEEecCChhhhccHHHHhhCC
Confidence 5899999999999999999999999999999876 9999999998766544332221 11000 000 00011
Q ss_pred -CC-CCceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PP-GNKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~-~~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+. ..+++...++..++ |. .+......-..| |+|| |||+++ +++.+|+++++||||++
T Consensus 577 ~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~L-----SGGQ---rQRiaLARall~~p~iliLDEptS~--- 645 (710)
T TIGR03796 577 DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL-----SGGQ---RQRLEIARALVRNPSILILDEATSA--- 645 (710)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCC-----CHHH---HHHHHHHHHHhhCCCEEEEECcccc---
Confidence 11 11111122222221 11 011001122346 9999 999999 99999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 646 LD~~te~~i~ 655 (710)
T TIGR03796 646 LDPETEKIID 655 (710)
T ss_pred CCHHHHHHHH
Confidence 9988766553
No 290
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=9.4e-21 Score=144.49 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=85.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-----C--CCeeeeeeeecCC-CCHHHHHHHHhcccccc---CCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-----P--ETYALTSVPFNFY-TSSEMLQKVLEKPLEKK---AGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-----~--g~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~- 68 (163)
+||++++||+++|+|+||||||||+++|+|.++ | |+|.++|.++... .........+....... ...+
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 122 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIY 122 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHH
Confidence 579999999999999999999999999999864 3 9999999876421 11111111111000000 0000
Q ss_pred ----e-----cCCCC----ceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 69 ----F-----GPPGN----KTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 69 ----~-----~~~~~----~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
+ +.... +.+...++.+++. ......+.++.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 123 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L-----SgGe---~qrv~laraL~~~p~lllLDEP 194 (271)
T PRK14238 123 DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL-----SGGQ---QQRLCIARCLAIEPDVILMDEP 194 (271)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCC
Confidence 0 00000 0001111122110 0111124456666 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
++| ||+..+..+..++
T Consensus 195 t~~---LD~~~~~~l~~~l 210 (271)
T PRK14238 195 TSA---LDPISTLKVEELV 210 (271)
T ss_pred CCc---CCHHHHHHHHHHH
Confidence 999 9988877665433
No 291
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.77 E-value=7.7e-21 Score=158.31 Aligned_cols=137 Identities=17% Similarity=0.319 Sum_probs=89.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---cc-----CCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KK-----AGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~ 70 (163)
+||++++||.++|+||||||||||++.++|.++| |+|.++|.++...+.....+. +..... .+ .+..++
T Consensus 359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~~Ni~~~ 437 (574)
T PRK11160 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA-ISVVSQRVHLFSATLRDNLLLA 437 (574)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh-eeEEcccchhhcccHHHHhhcC
Confidence 5899999999999999999999999999999766 999999998876654333222 111000 00 001111
Q ss_pred CC--CCceEEEEEecCCCCCC----cCCC---CCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 71 PP--GNKTMIYFVDDMNMPEV----DAYG---TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 71 ~~--~~~~~~~~l~~~~l~~~----~~~~---~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
.+ ..+++...++.+++.+. +.+. ......+ |+|| |||+++ +++.+|+++++||||++ +
T Consensus 438 ~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~L-----SgGq---rqRialARall~~~~ililDE~ts~---l 506 (574)
T PRK11160 438 APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQL-----SGGE---QRRLGIARALLHDAPLLLLDEPTEG---L 506 (574)
T ss_pred CCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---C
Confidence 11 11222233333333211 1111 1123346 9999 999999 99999999999999999 9
Q ss_pred CchhhhceeE
Q psy2657 140 EPRLQRHFYV 149 (163)
Q Consensus 140 ~~~~~~~~~~ 149 (163)
|+.....+..
T Consensus 507 D~~t~~~i~~ 516 (574)
T PRK11160 507 DAETERQILE 516 (574)
T ss_pred CHHHHHHHHH
Confidence 9887766543
No 292
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.3e-21 Score=157.50 Aligned_cols=129 Identities=12% Similarity=0.187 Sum_probs=89.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCH--------HHHHHHHhccccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSS--------EMLQKVLEKPLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 69 (163)
+||++++|++++|+||||||||||+++++|.++| |+|.+++. .+...... ......+. ....
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~----~~~~--- 410 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMS----QWRQ--- 410 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHH----Hhcc---
Confidence 5899999999999999999999999999999765 88887652 22211110 00111111 0000
Q ss_pred cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 70 GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 70 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
.....+++..+++.+++... +.++++.+| |+|+ +||+++ +++.+|+++++||||++ ||+.....+
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgGq---~qrv~la~al~~~p~lllLDEPt~~---LD~~~~~~l 477 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQD--DIKKSVKVL-----SGGE---KGRMLFGKLMMQKPNVLVMDEPTNH---MDMESIESL 477 (530)
T ss_pred CCccHHHHHHHHHHcCCChh--HhcCccccc-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCCC---CCHHHHHHH
Confidence 01112234456677777421 126779999 9999 999998 89999999999999999 999887665
Q ss_pred eE
Q psy2657 148 YV 149 (163)
Q Consensus 148 ~~ 149 (163)
..
T Consensus 478 ~~ 479 (530)
T PRK15064 478 NM 479 (530)
T ss_pred HH
Confidence 44
No 293
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.2e-21 Score=144.74 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=88.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc--------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK--------K 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~ 64 (163)
+||.+++||+++|+||||||||||+++++|.++ .|+|.++|.++.... ........+...... .
T Consensus 27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 106 (261)
T PRK14263 27 SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIF 106 (261)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHH
Confidence 589999999999999999999999999999863 489999998764321 111112111110000 0
Q ss_pred CCcee-------cCCCCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 65 AGRNF-------GPPGNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 65 ~~~~~-------~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
....+ .....+++...++.+++... ....+.++.++ |+|+ +||+++ +++.+|+++++|||++
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllDEPts 178 (261)
T PRK14263 107 DNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSL-----SGGQ---QQRLCIARAIATEPEVLLLDEPCS 178 (261)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCCc
Confidence 00000 00001122234444554221 11113445666 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEE
Q psy2657 135 GSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~ 151 (163)
| ||+..+..+..++
T Consensus 179 g---LD~~~~~~l~~~l 192 (261)
T PRK14263 179 A---LDPIATRRVEELM 192 (261)
T ss_pred c---CCHHHHHHHHHHH
Confidence 9 9988776654433
No 294
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=7.2e-21 Score=158.99 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=88.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh--ccccccCC-----ceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE--KPLEKKAG-----RNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~ 71 (163)
+||++++||.++|+|+||||||||++.++|.++| |+|.++|.+++..+.....+.+-. .....+.+ ..++.
T Consensus 360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~ 439 (592)
T PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR 439 (592)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC
Confidence 5899999999999999999999999999999876 999999999876554433332210 00000000 00111
Q ss_pred -CCCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 72 -PGNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 72 -~~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
...+++...++.+++.+ .+.........+ |+|| |||+++ +++.+|+++++||||++ ||
T Consensus 440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L-----SGGq---rQRialARaLl~~~~illlDEpts~---LD 508 (592)
T PRK10790 440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL-----SVGQ---KQLLALARVLVQTPQILILDEATAN---ID 508 (592)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCccc---CC
Confidence 11112222233333211 111101122345 9999 999999 99999999999999999 99
Q ss_pred chhhhcee
Q psy2657 141 PRLQRHFY 148 (163)
Q Consensus 141 ~~~~~~~~ 148 (163)
+...+.+.
T Consensus 509 ~~t~~~i~ 516 (592)
T PRK10790 509 SGTEQAIQ 516 (592)
T ss_pred HHHHHHHH
Confidence 88766553
No 295
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=2e-21 Score=143.64 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=82.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCH---HHHHHHHhcccccc---CCc-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSS---EMLQKVLEKPLEKK---AGR----- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~----- 67 (163)
+||++.+||+++|+||||||||||+++|+|.++| |+|.++|.++...... ...+..+....... ...
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl 99 (218)
T cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENI 99 (218)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHH
Confidence 5899999999999999999999999999999654 9999988765432110 00111110000000 000
Q ss_pred eecC-CCCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 68 NFGP-PGNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 68 ~~~~-~~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.+.. ...+.....++.+++.. .+...+.++.++ |+|+ +||+++ +++.+|+++++|||+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~illlDEPt~~- 170 (218)
T cd03290 100 TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINL-----SGGQ---RQRICVARALYQNTNIVFLDDPFSA- 170 (218)
T ss_pred hhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcC-----CHHH---HHHHHHHHHHhhCCCEEEEeCCccc-
Confidence 0000 00000011112222210 001113346667 9999 999998 99999999999999999
Q ss_pred ccCCchhhhce
Q psy2657 137 FTIEPRLQRHF 147 (163)
Q Consensus 137 ~~l~~~~~~~~ 147 (163)
||+..+..+
T Consensus 171 --LD~~~~~~l 179 (218)
T cd03290 171 --LDIHLSDHL 179 (218)
T ss_pred --cCHHHHHHH
Confidence 998865543
No 296
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.2e-21 Score=147.35 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=86.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhcccccc---CC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEKK---AG--- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~--- 66 (163)
+||++.+||+++|+||||||||||+++|+|.++ .|+|.++|.++.... ........+....... ..
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 143 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIR 143 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHH
Confidence 579999999999999999999999999999863 499999998765321 1111111111000000 00
Q ss_pred --ceecC-----------------CC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--Ee
Q psy2657 67 --RNFGP-----------------PG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KD 120 (163)
Q Consensus 67 --~~~~~-----------------~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~ 120 (163)
..+.. .. .+.+..+++.+++.. .....+..+.+| |+|+ +||+++ ++
T Consensus 144 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgGq---~qrv~LAraL 215 (305)
T PRK14264 144 ENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL-----SGGQ---QQRLCIARCL 215 (305)
T ss_pred HHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC-----CHHH---HHHHHHHHHH
Confidence 00000 00 001112223333321 111124456666 9999 999998 99
Q ss_pred ecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 121 IHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 121 ~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
+.+|+++++|||++| ||+..+..+..+
T Consensus 216 ~~~p~lLLLDEPtsg---LD~~~~~~l~~~ 242 (305)
T PRK14264 216 AVDPEVILMDEPASA---LDPIATSKIEDL 242 (305)
T ss_pred hcCCCEEEEeCCccc---CCHHHHHHHHHH
Confidence 999999999999999 998877665443
No 297
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.77 E-value=1e-20 Score=160.89 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=89.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--cccc-----CCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--LEKK-----AGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~ 71 (163)
+||++++||.++|+||||||||||++.++|.++| |+|.++|.+++..+.....+.+..-+ ...+ .+..++.
T Consensus 500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~ 579 (711)
T TIGR00958 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL 579 (711)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC
Confidence 5899999999999999999999999999999876 99999999987765444333221100 0000 0111121
Q ss_pred CC--CceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 72 PG--NKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 72 ~~--~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
+. .+++...++..++.+ .+......-.++ |+|| |||+++ +++.+|+++++||||++ |
T Consensus 580 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L-----SGGQ---kQRlalARALl~~p~ILILDEpTSa---L 648 (711)
T TIGR00958 580 TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL-----SGGQ---KQRIAIARALVRKPRVLILDEATSA---L 648 (711)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEEccccc---c
Confidence 11 112222222222211 111111122346 9999 999999 99999999999999999 9
Q ss_pred CchhhhceeE
Q psy2657 140 EPRLQRHFYV 149 (163)
Q Consensus 140 ~~~~~~~~~~ 149 (163)
|+...+.+..
T Consensus 649 D~~te~~i~~ 658 (711)
T TIGR00958 649 DAECEQLLQE 658 (711)
T ss_pred CHHHHHHHHH
Confidence 9987766554
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.6e-20 Score=157.92 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=89.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee-ec--CC-C---CHHHHHHHHhc---------ccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP-FN--FY-T---SSEMLQKVLEK---------PLE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~-~~--~~-~---~~~~~~~~~~~---------~~~ 62 (163)
+||+|.+|++++|+||||||||||+|+|+|.++| |+|.+++.. +. .+ . .......+... .+.
T Consensus 20 vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 99 (638)
T PRK10636 20 ATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLH 99 (638)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 6899999999999999999999999999998655 888876632 11 11 0 00111100000 000
Q ss_pred cc---C-----Cce---ec----CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceE
Q psy2657 63 KK---A-----GRN---FG----PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM 125 (163)
Q Consensus 63 ~~---~-----~~~---~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~ 125 (163)
.. . ... +. .....++..+++.+++.... .++++.+| |+|+ ++|+++ +++.+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~--~~~~~~~L-----SgGe---rqRv~LA~aL~~~P~ 169 (638)
T PRK10636 100 DANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ--LERPVSDF-----SGGW---RMRLNLAQALICRSD 169 (638)
T ss_pred HHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchh--hcCchhhc-----CHHH---HHHHHHHHHHccCCC
Confidence 00 0 000 00 01112344567778885211 26788999 9999 999998 9999999
Q ss_pred EEEEecCCCCcccCCchhhhceeEE
Q psy2657 126 FVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 126 ~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
++++||||++ ||+.....+..+
T Consensus 170 lLLLDEPtn~---LD~~~~~~L~~~ 191 (638)
T PRK10636 170 LLLLDEPTNH---LDLDAVIWLEKW 191 (638)
T ss_pred EEEEcCCCCc---CCHHHHHHHHHH
Confidence 9999999999 998877665433
No 299
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.7e-20 Score=142.71 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=89.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---c-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---K----- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~----- 64 (163)
+||++.+||+++|+||||||||||++++.|.++ .|+|.++|.+++... ........+...... .
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 118 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIY 118 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHH
Confidence 589999999999999999999999999999863 499999998874321 111111111100000 0
Q ss_pred CCcee-----cCCC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGRNF-----GPPG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~~~-----~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
....+ +... .+++...++.+++.. .....++++.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 119 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L-----S~G~---~qrl~laral~~~p~lllLDEP 190 (267)
T PRK14237 119 ENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL-----SGGQ---QQRLCIARAIAVKPDILLMDEP 190 (267)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 00000 0000 011122234444421 011225567777 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+.....+..++.
T Consensus 191 t~~---LD~~~~~~l~~~l~ 207 (267)
T PRK14237 191 ASA---LDPISTMQLEETMF 207 (267)
T ss_pred ccc---CCHHHHHHHHHHHH
Confidence 999 99888766644433
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=9.5e-21 Score=157.23 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=87.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCHH-------HHHHHHhccccccCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSSE-------MLQKVLEKPLEKKAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 70 (163)
+||++.+||+++|+||||||||||+++++|.++| |+|.+++. .+....... .....+....... . ..
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~-~~ 419 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDII--K-VG 419 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccc--c-cc
Confidence 5899999999999999999999999999999765 88877431 122211110 1111111100000 0 00
Q ss_pred CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
........+++.+++... ..++++.+| |+|+ +||+++ +++.+|+++++||||+| ||+..+..+.
T Consensus 420 -~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgG~---~qrv~la~al~~~p~lllLDEPt~~---LD~~~~~~l~ 485 (556)
T PRK11819 420 -NREIPSRAYVGRFNFKGG--DQQKKVGVL-----SGGE---RNRLHLAKTLKQGGNVLLLDEPTND---LDVETLRALE 485 (556)
T ss_pred -ccHHHHHHHHHhCCCChh--HhcCchhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCCC---CCHHHHHHHH
Confidence 001111235667777431 126778999 9999 999998 89999999999999999 9988876664
Q ss_pred E
Q psy2657 149 V 149 (163)
Q Consensus 149 ~ 149 (163)
.
T Consensus 486 ~ 486 (556)
T PRK11819 486 E 486 (556)
T ss_pred H
Confidence 3
No 301
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.77 E-value=9.9e-21 Score=157.01 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=87.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecC--CCC-----HHHHHHHHhccccccCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNF--YTS-----SEMLQKVLEKPLEKKAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~ 70 (163)
+||.+++|++++|+||||||||||+++++|.++| |+|.+++. .+.. +.. .......+....... . ..
T Consensus 341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~-~~ 417 (552)
T TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDII--Q-LG 417 (552)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhcccc--c-cC
Confidence 5899999999999999999999999999999765 88877431 1221 111 001111111111000 0 00
Q ss_pred CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
....+...+++.+++... ..++++.+| |+|+ +||+++ +++.+|+++++||||++ ||+..+..+.
T Consensus 418 -~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgGe---~qrv~la~al~~~p~lllLDEPt~~---LD~~~~~~l~ 483 (552)
T TIGR03719 418 -KREVPSRAYVGRFNFKGS--DQQKKVGQL-----SGGE---RNRVHLAKTLKSGGNVLLLDEPTND---LDVETLRALE 483 (552)
T ss_pred -cchHHHHHHHHhCCCChh--HhcCchhhC-----CHHH---HHHHHHHHHHhhCCCEEEEeCCCCC---CCHHHHHHHH
Confidence 001112235666777431 126778999 9999 999998 99999999999999999 9988876654
Q ss_pred E
Q psy2657 149 V 149 (163)
Q Consensus 149 ~ 149 (163)
.
T Consensus 484 ~ 484 (552)
T TIGR03719 484 E 484 (552)
T ss_pred H
Confidence 3
No 302
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6e-20 Score=133.88 Aligned_cols=130 Identities=13% Similarity=0.147 Sum_probs=88.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC----CCCCeeeeeeeecCCCCHHHHHHHHhcccccc---CC----cee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL----PPETYALTSVPFNFYTSSEMLQKVLEKPLEKK---AG----RNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~----~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~ 69 (163)
+||+|+.||+.+|+||||||||||.+.|+|.. ..|+|.++|+++...+..+..+.-+.--++.. .+ .+.
T Consensus 23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fL 102 (251)
T COG0396 23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFL 102 (251)
T ss_pred cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHH
Confidence 68999999999999999999999999999985 34999999999998887776655322111110 00 000
Q ss_pred c----C---------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHH----HhcCCceecCCcce--EeecceEEEEEe
Q psy2657 70 G----P---------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQY----MDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 70 ~----~---------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~----~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
. . ...+++...++.++++. +++... +|+|+ |+|..+ .++.+|++.++|
T Consensus 103 r~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~----------~~l~R~vN~GFSGGE---kKR~EilQ~~~lePkl~ILD 169 (251)
T COG0396 103 RAAMNARRGARGILPEFIKELKEKAELLGLDE----------EFLERYVNEGFSGGE---KKRNEILQLLLLEPKLAILD 169 (251)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHcCCCH----------HHhhcccCCCcCcch---HHHHHHHHHHhcCCCEEEec
Confidence 0 0 00011111223333322 222222 69999 999998 888899999999
Q ss_pred cCCCCcccCCchhhhc
Q psy2657 131 NPTSGSFTIEPRLQRH 146 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~ 146 (163)
||.|| ||-...+.
T Consensus 170 E~DSG---LDIdalk~ 182 (251)
T COG0396 170 EPDSG---LDIDALKI 182 (251)
T ss_pred CCCcC---ccHHHHHH
Confidence 99999 88655543
No 303
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.77 E-value=1.5e-20 Score=156.00 Aligned_cols=136 Identities=13% Similarity=0.211 Sum_probs=89.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccCC----ceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKAG----RNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~ 71 (163)
+||++++|+.++|+||||||||||++.++|.++| |+|.++|.++...+... .+..+..... .+.+ +....
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~lf~~ti~~n~~~~ 439 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD-YRDLFSAIFADFHLFDDLIGPDEGEH 439 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH-HHhhCcEEccChhhhhhhhhcccccc
Confidence 5799999999999999999999999999998766 99999999887654322 2221111000 0000 00000
Q ss_pred CCCceEEEEEecCCCCCCc---CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhc
Q psy2657 72 PGNKTMIYFVDDMNMPEVD---AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 72 ~~~~~~~~~l~~~~l~~~~---~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~ 146 (163)
...+++..+++.+++.+.- ..+......+ |+|| |||+++ +++.+|+++++||||++ ||+...+.
T Consensus 440 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L-----SgGq---~qRlalaRall~~~~ililDE~ts~---LD~~~~~~ 508 (555)
T TIGR01194 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTTAL-----STGQ---QKRLALICAWLEDRPILLFDEWAAD---QDPAFKRF 508 (555)
T ss_pred hhHHHHHHHHHHcCCchhhcccccccCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccC---CCHHHHHH
Confidence 1112222344444443211 0011113455 9999 999999 99999999999999999 99888776
Q ss_pred ee
Q psy2657 147 FY 148 (163)
Q Consensus 147 ~~ 148 (163)
+.
T Consensus 509 i~ 510 (555)
T TIGR01194 509 FY 510 (555)
T ss_pred HH
Confidence 54
No 304
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.3e-20 Score=143.54 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=87.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC-------CCCCeeeeeeeecCCCC-HHHHHHHHhccccc---cCCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL-------PPETYALTSVPFNFYTS-SEMLQKVLEKPLEK---KAGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~-------~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~- 68 (163)
+||++++||+++|+||||||||||+++++|.. ..|++.++|.++..... .......+...... ....+
T Consensus 40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 119 (268)
T PRK14248 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIY 119 (268)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHH
Confidence 58999999999999999999999999999964 24999999987753211 11111111000000 00000
Q ss_pred ----e----cCC-C----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 69 ----F----GPP-G----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 69 ----~----~~~-~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
+ ... . .+.+...++.+++.. ...+.++++.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgGq---~qrl~laral~~~p~lllLDEP 191 (268)
T PRK14248 120 NNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSL-----SGGQ---QQRLCIARTLAMKPAVLLLDEP 191 (268)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccC-----CHHH---HHHHHHHHHHhCCCCEEEEcCC
Confidence 0 000 0 001112233334321 011124556677 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEEc
Q psy2657 133 TSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l~ 153 (163)
++| ||+..+..+..++.+
T Consensus 192 t~~---LD~~~~~~l~~~l~~ 209 (268)
T PRK14248 192 ASA---LDPISNAKIEELITE 209 (268)
T ss_pred Ccc---cCHHHHHHHHHHHHH
Confidence 999 998887766544433
No 305
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.77 E-value=5.1e-20 Score=156.69 Aligned_cols=136 Identities=13% Similarity=0.141 Sum_probs=87.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--cccc-----CCceec-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--LEKK-----AGRNFG- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~- 70 (163)
+||++++|+.++|+||||||||||++.++|.++| |+|.++|.+++..+.....+.+..-+ ...+ .+..++
T Consensus 493 isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~ 572 (708)
T TIGR01193 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGA 572 (708)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccC
Confidence 5899999999999999999999999999999766 99999999987665444333221000 0000 001111
Q ss_pred -CCC-CceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PPG-NKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~~-~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+.. .+++...++..++ |. .+.........| |+|| |||+++ +++.+|+++++||||++
T Consensus 573 ~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L-----SgGQ---rQRialARall~~p~iliLDE~Ts~--- 641 (708)
T TIGR01193 573 KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI-----SGGQ---KQRIALARALLTDSKVLILDESTSN--- 641 (708)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC-----CHHH---HHHHHHHHHHhhCCCEEEEeCcccc---
Confidence 111 1111112222221 11 011001123346 9999 999999 99999999999999999
Q ss_pred CCchhhhce
Q psy2657 139 IEPRLQRHF 147 (163)
Q Consensus 139 l~~~~~~~~ 147 (163)
||+.....+
T Consensus 642 LD~~te~~i 650 (708)
T TIGR01193 642 LDTITEKKI 650 (708)
T ss_pred CCHHHHHHH
Confidence 998776554
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.76 E-value=8.9e-21 Score=157.15 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=87.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccCCcee--cC-C
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKAGRNF--GP-P 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~-~ 72 (163)
+||.+++|+.++|+||||||||||++.++|.++| |+|.++|.++...+.....+. +..... ...+.+. +. .
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~~n~~~~ 420 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL-FSAVFTDFHLFDQLLGPEGKPA 420 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh-eEEEecChhHHHHhhccccCch
Confidence 5899999999999999999999999999999766 999999998865543332221 110000 0000000 00 0
Q ss_pred CCceEEEEEecCCCCCCcCCCCC--CHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTV--QPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~--~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
..+.+..+++.+++.......+. .-..+ |+|| |||+++ +++.+|+++++||||++ ||+.....+
T Consensus 421 ~~~~~~~~~~~~~l~~~~~~~~~~~~G~~L-----SgGq---~qRl~lARal~~~~~ililDE~ts~---LD~~~~~~i 488 (547)
T PRK10522 421 NPALVEKWLERLKMAHKLELEDGRISNLKL-----SKGQ---KKRLALLLALAEERDILLLDEWAAD---QDPHFRREF 488 (547)
T ss_pred HHHHHHHHHHHcCCchhhhccccCCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCCC---CCHHHHHHH
Confidence 11122233444444322100010 01245 9999 999998 99999999999999999 998776554
No 307
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.3e-20 Score=133.30 Aligned_cols=132 Identities=20% Similarity=0.323 Sum_probs=84.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHH--Hhc------cccc----cCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKV--LEK------PLEK----KAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~--~~~------~~~~----~~~ 66 (163)
+||.+.+||+++|+||||+|||||+|.+.|.+.| |++.++|.+.+........+.. +.. ++.. ..+
T Consensus 20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mG 99 (259)
T COG4559 20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG 99 (259)
T ss_pred cceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhc
Confidence 5899999999999999999999999999999765 8999999998877766544331 111 0110 001
Q ss_pred ceec---CC--C-CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce----Ee----ecceEEEEEecC
Q psy2657 67 RNFG---PP--G-NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL----KD----IHNIMFVSAMNP 132 (163)
Q Consensus 67 ~~~~---~~--~-~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~----~~----~~~~~~i~~deP 132 (163)
.+-. .. . .+.....+...++.... .+.-.+| |+|+ +||+.+ +. +.++.++++|||
T Consensus 100 r~p~~~g~~~~e~~~i~~~ala~~d~~~la---~R~y~~L-----SGGE---qQRVqlARvLaQl~~~v~~~r~L~LDEP 168 (259)
T COG4559 100 RIPHRSGREPEEDERIAAQALAATDLSGLA---GRDYRTL-----SGGE---QQRVQLARVLAQLWPPVPSGRWLFLDEP 168 (259)
T ss_pred ccccccCCCchhhHHHHHHHHHHcChhhhh---ccchhhc-----CchH---HHHHHHHHHHHHccCCCCCCceEEecCC
Confidence 1110 01 0 11122233333332222 3335567 9999 999887 33 334459999999
Q ss_pred CCCcccCCchhhhc
Q psy2657 133 TSGSFTIEPRLQRH 146 (163)
Q Consensus 133 ~~g~~~l~~~~~~~ 146 (163)
|+. ||..-+.+
T Consensus 169 tsa---LDi~HQ~~ 179 (259)
T COG4559 169 TSA---LDIAHQHH 179 (259)
T ss_pred ccc---cchHHHHH
Confidence 999 88765433
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=1.2e-20 Score=156.65 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=88.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecC--CC-----CHHHHHHHHhcc---------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNF--YT-----SSEMLQKVLEKP---------L 61 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~--~~-----~~~~~~~~~~~~---------~ 61 (163)
+||+|++|++++|+||||||||||+++++|.++| |+|.+++ ..+.. +. .......+.... .
T Consensus 26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (556)
T PRK11819 26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF 105 (556)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 6899999999999999999999999999999765 8887652 11211 11 101111111000 0
Q ss_pred cc-----c-CCc-e-------------e---c-CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcc
Q psy2657 62 EK-----K-AGR-N-------------F---G-PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLS 117 (163)
Q Consensus 62 ~~-----~-~~~-~-------------~---~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~ 117 (163)
.. . ... . + + ....+++..+++.++++. . ++++.+| |+|| +||++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~---~~~~~~L-----SgGq---kqrv~ 173 (556)
T PRK11819 106 NEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W---DAKVTKL-----SGGE---RRRVA 173 (556)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c---cCchhhc-----CHHH---HHHHH
Confidence 00 0 000 0 0 0 000123334566777742 2 6778999 9999 99999
Q ss_pred e--EeecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 118 L--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 118 ~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
+ +++.+|+++++||||++ ||+.....+..+
T Consensus 174 la~al~~~p~vlLLDEPt~~---LD~~~~~~l~~~ 205 (556)
T PRK11819 174 LCRLLLEKPDMLLLDEPTNH---LDAESVAWLEQF 205 (556)
T ss_pred HHHHHhCCCCEEEEcCCCCc---CChHHHHHHHHH
Confidence 8 99999999999999999 999888765443
No 309
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.5e-20 Score=142.67 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=88.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-------CCeeeeeeeecCC-CCHHHHHHHHhccccc---cCCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-------ETYALTSVPFNFY-TSSEMLQKVLEKPLEK---KAGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-------g~i~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~- 68 (163)
+||++++|++++|+||||||||||+++++|.++| |++.++|.+++.. .........+...... ....+
T Consensus 26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 105 (261)
T PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVY 105 (261)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHH
Confidence 5899999999999999999999999999999764 7888888776321 1111111111000000 00000
Q ss_pred ---------ecC-CC---CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 69 ---------FGP-PG---NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 69 ---------~~~-~~---~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.+. .. .+.+...++.+++.. .....++++.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----SgGq---~qrv~laral~~~p~vllLDEP 177 (261)
T PRK14258 106 DNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDL-----SGGQ---QQRLCIARALAVKPKVLLMDEP 177 (261)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCC
Confidence 000 00 011223334444422 111225566777 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+.....+..+..
T Consensus 178 ~~~---LD~~~~~~l~~~l~ 194 (261)
T PRK14258 178 CFG---LDPIASMKVESLIQ 194 (261)
T ss_pred Ccc---CCHHHHHHHHHHHH
Confidence 999 99887766544433
No 310
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3e-20 Score=140.03 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=87.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC-------CCCCeeeeeeeecCCC-CHHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL-------PPETYALTSVPFNFYT-SSEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~-------~~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||++.+||+++|+||||||||||+++++|.. ..|+|.++|.+++... ........+...... ...|...
T Consensus 22 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~--~~~~~~t 99 (250)
T PRK14266 22 VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQK--PNPFPKS 99 (250)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecC--CccCcch
Confidence 57899999999999999999999999999864 2499999998875321 111112111110000 0001000
Q ss_pred ---------------C----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 73 ---------------G----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 73 ---------------~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
. .+++...++.+++... ....+.++.++ |+|+ +||+++ +++.+|+++++|
T Consensus 100 ~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~llllD 171 (250)
T PRK14266 100 IFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGL-----SGGQ---QQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred HHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEc
Confidence 0 0111122333343210 11124445566 9999 999998 999999999999
Q ss_pred cCCCCcccCCchhhhceeEEEE
Q psy2657 131 NPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~~~l 152 (163)
||++| ||+..++.+..++.
T Consensus 172 EP~~g---LD~~~~~~l~~~l~ 190 (250)
T PRK14266 172 EPCSA---LDPISTTKIEDLIH 190 (250)
T ss_pred CCCcc---CCHHHHHHHHHHHH
Confidence 99999 99888766644443
No 311
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-20 Score=142.12 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=86.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCC-HHHHHHHHhccccc---cCCce-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTS-SEMLQKVLEKPLEK---KAGRN- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~- 68 (163)
+||++.+||+++|+||||||||||+++++|..+ .|+|.++|.++..... .......+...... ....+
T Consensus 24 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 103 (252)
T PRK14255 24 IDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIY 103 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHH
Confidence 589999999999999999999999999999742 4999999987643111 11111100000000 00000
Q ss_pred ---------ecCCC----CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 69 ---------FGPPG----NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 69 ---------~~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.+... .+.+...++.+++.. ...+.++.+.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 104 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~llllDEP 175 (252)
T PRK14255 104 ENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSL-----SGGQ---QQRVCIARVLAVKPDVILLDEP 175 (252)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEcCC
Confidence 00000 011111223333311 111225567777 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+.....+..++.
T Consensus 176 t~~---LD~~~~~~l~~~l~ 192 (252)
T PRK14255 176 TSA---LDPISSTQIENMLL 192 (252)
T ss_pred Ccc---CCHHHHHHHHHHHH
Confidence 999 99887766644433
No 312
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.76 E-value=2.9e-20 Score=154.76 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=86.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---c-----CCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---K-----AGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~ 70 (163)
+||.+++|+.++|+||||||||||++.++|.++| |+|.++|.++...+.....+. +...... . .+..++
T Consensus 334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~~Ni~~~ 412 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR-LAVVSQTPFLFSDTVANNIALG 412 (569)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh-eEEEccCCeeccccHHHHHhcC
Confidence 5899999999999999999999999999999766 999999998765543322221 1110000 0 000111
Q ss_pred -CCC-CceEEEEEecCC-------CCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PPG-NKTMIYFVDDMN-------MPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~~-~~~~~~~l~~~~-------l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+.. .+.+...++..+ +|. .+.........+ |+|| |||+++ +++.+|+++++||||++
T Consensus 413 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L-----SgGq---~qRi~lARall~~~~illlDEpts~--- 481 (569)
T PRK10789 413 RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVML-----SGGQ---KQRISIARALLLNAEILILDDALSA--- 481 (569)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEECcccc---
Confidence 111 111111111111 111 111112223456 9999 999998 99999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 482 LD~~~~~~i~ 491 (569)
T PRK10789 482 VDGRTEHQIL 491 (569)
T ss_pred CCHHHHHHHH
Confidence 9988876654
No 313
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.76 E-value=3e-20 Score=155.87 Aligned_cols=129 Identities=13% Similarity=0.241 Sum_probs=87.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-----CCeeeeeeeecCCCCHHHHHHHHhc---------ccccc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-----ETYALTSVPFNFYTSSEMLQKVLEK---------PLEKK-- 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-- 64 (163)
+|+.+++||.++|+||||||||||+++++|..++ |+|.++|.+.+. ...+..+.. .+...
T Consensus 44 vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~----~~~~~~i~yv~Q~~~~~~~lTV~e~ 119 (617)
T TIGR00955 44 VSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA----KEMRAISAYVQQDDLFIPTLTVREH 119 (617)
T ss_pred CEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH----HHHhhhceeeccccccCccCcHHHH
Confidence 5889999999999999999999999999998654 779999987642 111111000 00000
Q ss_pred ---------CCceecCCCCceEEEEEecCCCCCCcCCCCCCH------HHHHHHHHhcCCceecCCcce--EeecceEEE
Q psy2657 65 ---------AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQP------HTVIRQYMDYQHWYDRQKLSL--KDIHNIMFV 127 (163)
Q Consensus 65 ---------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~------~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i 127 (163)
..........+++..+++.+++.+.. +..+ ..+ |+|| |||+++ +++.+|+++
T Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~t~vg~~~~~~~L-----SgGq---rkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA---NTRIGVPGRVKGL-----SGGE---RKRLAFASELLTDPPLL 188 (617)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcC---cCccCCCCCCCCc-----Ccch---hhHHHHHHHHHcCCCEE
Confidence 00000011112345677777776532 3333 357 9999 999998 999999999
Q ss_pred EEecCCCCcccCCchhhhce
Q psy2657 128 SAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 128 ~~deP~~g~~~l~~~~~~~~ 147 (163)
++|||++| ||+....++
T Consensus 189 llDEPtsg---LD~~~~~~l 205 (617)
T TIGR00955 189 FCDEPTSG---LDSFMAYSV 205 (617)
T ss_pred EeeCCCcc---hhHHHHHHH
Confidence 99999999 998776555
No 314
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.76 E-value=2.1e-20 Score=155.66 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=87.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccC-----Cceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKA-----GRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~ 70 (163)
+||++++||.++|+||||||||||++.++|.++| |++.++|.+++..+.....+. +..... ... +..++
T Consensus 359 inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~-i~~~~Q~~~lf~~Ti~~Ni~~~ 437 (576)
T TIGR02204 359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR-MALVPQDPVLFAASVMENIRYG 437 (576)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh-ceEEccCCccccccHHHHHhcC
Confidence 5799999999999999999999999999999766 999999998876544332222 111100 000 01111
Q ss_pred C-C-CCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 P-P-GNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~-~-~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
. . ..+++...++.+++.+ .+.........+ |+|| |||+++ +++.+|+++++||||++
T Consensus 438 ~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L-----SgGq---~Qrl~laRal~~~~~ililDEpts~--- 506 (576)
T TIGR02204 438 RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL-----SGGQ---RQRIAIARAILKDAPILLLDEATSA--- 506 (576)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC-----CHHH---HHHHHHHHHHHhCCCeEEEeCcccc---
Confidence 1 1 1112222222222210 111001123346 9999 999999 99999999999999999
Q ss_pred CCchhhhce
Q psy2657 139 IEPRLQRHF 147 (163)
Q Consensus 139 l~~~~~~~~ 147 (163)
+|+...+.+
T Consensus 507 lD~~~~~~i 515 (576)
T TIGR02204 507 LDAESEQLV 515 (576)
T ss_pred cCHHHHHHH
Confidence 998876654
No 315
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=1.3e-19 Score=151.44 Aligned_cols=136 Identities=15% Similarity=0.206 Sum_probs=87.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccC-----Cceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKA-----GRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~ 70 (163)
+|+.+++|+.++|+||||||||||++.++|.++| |+|.++|.+++..+.....+.+ ..... .+. +..++
T Consensus 354 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~Ti~~Ni~~~ 432 (588)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI-AVVFQDAGLFNRSIEDNIRVG 432 (588)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe-EEEecCcccccccHHHHHhcC
Confidence 5899999999999999999999999999999776 9999999988765544333321 11000 000 00111
Q ss_pred -CC-CCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PP-GNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~-~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+. ..+++...++.+++.+ .+.........+ |+|| |||+++ +++.+|+++++||||++
T Consensus 433 ~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L-----SgGq---~QRialARall~~~~iliLDEpts~--- 501 (588)
T PRK13657 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL-----SGGE---RQRLAIARALLKDPPILILDEATSA--- 501 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC---
Confidence 11 1111222222222211 010001112235 9999 999999 99999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 502 LD~~t~~~i~ 511 (588)
T PRK13657 502 LDVETEAKVK 511 (588)
T ss_pred CCHHHHHHHH
Confidence 9987766553
No 316
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=7.1e-21 Score=158.53 Aligned_cols=132 Identities=13% Similarity=0.137 Sum_probs=84.6
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCee-----------eeeeeecCCCCHHHH-HHHHh---cccccc--
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYA-----------LTSVPFNFYTSSEML-QKVLE---KPLEKK-- 64 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~-----------~~~~~~~~~~~~~~~-~~~~~---~~~~~~-- 64 (163)
.+++|++++|+||||||||||+|+++|.++| |++. ++|.++......... ...+. +.....
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 6899999999999999999999999999776 7775 555443211000000 00000 000000
Q ss_pred --CCcee----cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 65 --AGRNF----GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 65 --~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
...+. .....+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||++
T Consensus 175 ~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~---~~~~~~L-----SgGe---~qrv~ia~al~~~p~lllLDEPts~- 242 (590)
T PRK13409 175 VFKGKVRELLKKVDERGKLDEVVERLGLENIL---DRDISEL-----SGGE---LQRVAIAAALLRDADFYFFDEPTSY- 242 (590)
T ss_pred hhcchHHHHHHhhhHHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCCC-
Confidence 00000 000112233455666765433 7788899 9999 999998 88999999999999999
Q ss_pred ccCCchhhhceeE
Q psy2657 137 FTIEPRLQRHFYV 149 (163)
Q Consensus 137 ~~l~~~~~~~~~~ 149 (163)
||+..+..+..
T Consensus 243 --LD~~~~~~l~~ 253 (590)
T PRK13409 243 --LDIRQRLNVAR 253 (590)
T ss_pred --CCHHHHHHHHH
Confidence 99887655543
No 317
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.76 E-value=2.5e-20 Score=158.31 Aligned_cols=136 Identities=20% Similarity=0.326 Sum_probs=87.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--------cCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------KAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 70 (163)
+||++++||.++|+||||||||||++.++|.++| |+|.++|.+++..+.....+.+ ....+. ..+..++
T Consensus 484 i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i-~~v~Q~~~lf~~TI~eNi~~~ 562 (694)
T TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI-GYVPQDPRLFYGTLRDNIALG 562 (694)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc-EEECCChhhhhhhHHHHHhCC
Confidence 5899999999999999999999999999999876 9999999998766543332221 110000 0000111
Q ss_pred CC--CCceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PP--GNKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~--~~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+ ..+++...++..++ |. .+.........| |+|| |||+++ +++.+|+++++||||++
T Consensus 563 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L-----SgGQ---rQRlalARall~~p~iliLDE~Ts~--- 631 (694)
T TIGR03375 563 APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL-----SGGQ---RQAVALARALLRDPPILLLDEPTSA--- 631 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCCCC---
Confidence 11 11111222222221 11 011001122345 9999 999999 89999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 632 LD~~te~~i~ 641 (694)
T TIGR03375 632 MDNRSEERFK 641 (694)
T ss_pred CCHHHHHHHH
Confidence 9987766553
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=3.5e-20 Score=155.94 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=89.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee-ecC--C-----CCHHHHHHHHh------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP-FNF--Y-----TSSEMLQKVLE------------ 58 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~-~~~--~-----~~~~~~~~~~~------------ 58 (163)
+||.+++|++++|+||||||||||+|+|+|.++| |+|.+++.. +.. + ......+....
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 101 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRY 101 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 6899999999999999999999999999999765 888876631 111 0 00011111000
Q ss_pred ccccc----------c--CCce---ec----CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce-
Q psy2657 59 KPLEK----------K--AGRN---FG----PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL- 118 (163)
Q Consensus 59 ~~~~~----------~--~~~~---~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~- 118 (163)
..+.. . ...+ +. .....++..+++.+++. . ++++.+| |+|+ +||+++
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~---~~~~~~L-----SgGe---kqRv~LA 168 (635)
T PRK11147 102 HDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--P---DAALSSL-----SGGW---LRKAALG 168 (635)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--C---CCchhhc-----CHHH---HHHHHHH
Confidence 00000 0 0000 00 01112344556677774 1 5678899 9999 999998
Q ss_pred -EeecceEEEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 119 -KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 119 -~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
+++.+|+++++||||++ ||+.....+..++.
T Consensus 169 raL~~~P~lLLLDEPt~~---LD~~~~~~L~~~L~ 200 (635)
T PRK11147 169 RALVSNPDVLLLDEPTNH---LDIETIEWLEGFLK 200 (635)
T ss_pred HHHhcCCCEEEEcCCCCc---cCHHHHHHHHHHHH
Confidence 99999999999999999 99888766644433
No 319
>PLN03073 ABC transporter F family; Provisional
Probab=99.75 E-value=9.2e-21 Score=160.62 Aligned_cols=129 Identities=11% Similarity=0.178 Sum_probs=86.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCHH-----HHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSSE-----MLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||.+.+|++++|+||||||||||+|+++|.++| |+|.+++. .+....... ........ +.. .+...
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~-~~~----~~~~~ 602 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLY-MMR----CFPGV 602 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHH-HHH----hcCCC
Confidence 5899999999999999999999999999999766 88876532 121111000 00000000 000 00001
Q ss_pred CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
..+++..+++.+++... ..++++.+| |+|+ +||+++ +++.+|+++++||||++ ||+.....+
T Consensus 603 ~~~~i~~~L~~~gl~~~--~~~~~~~~L-----SgGq---kqRvaLAraL~~~p~lLLLDEPT~~---LD~~s~~~l 666 (718)
T PLN03073 603 PEQKLRAHLGSFGVTGN--LALQPMYTL-----SGGQ---KSRVAFAKITFKKPHILLLDEPSNH---LDLDAVEAL 666 (718)
T ss_pred CHHHHHHHHHHCCCChH--HhcCCcccc-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCCC---CCHHHHHHH
Confidence 12233456677777531 125678888 9999 999998 89999999999999999 998776554
No 320
>KOG0055|consensus
Probab=99.75 E-value=5.6e-20 Score=159.12 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=89.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHH---hcc----ccccCCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVL---EKP----LEKKAGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~ 71 (163)
+||.|++|+.|+|+|||||||||+++.+.+.++| |+|.++|.++...........+- +.+ ....++..|+.
T Consensus 372 ~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 372 VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK 451 (1228)
T ss_pred eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCC
Confidence 5899999999999999999999999999999877 99999999987776554433210 000 00111222333
Q ss_pred CCC--ce---------EEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 72 PGN--KT---------MIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 72 ~~~--~~---------~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
++. ++ +..|+..+.-.-....+++ -.+| |+|| |||+++ +++++|+++++||||++
T Consensus 452 ~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~-g~qL-----SGGQ---KQRIAIARalv~~P~ILLLDEaTSa--- 519 (1228)
T KOG0055|consen 452 PDATREEIEEAAKAANAHDFILKLPDGYDTLVGER-GVQL-----SGGQ---KQRIAIARALVRNPKILLLDEATSA--- 519 (1228)
T ss_pred CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCC-CCCC-----ChHH---HHHHHHHHHHHhCCCEEEecCcccc---
Confidence 321 11 1112222210000001111 1235 9999 999999 99999999999999999
Q ss_pred CCchhhhce
Q psy2657 139 IEPRLQRHF 147 (163)
Q Consensus 139 l~~~~~~~~ 147 (163)
||+...+..
T Consensus 520 LD~~se~~V 528 (1228)
T KOG0055|consen 520 LDAESERVV 528 (1228)
T ss_pred cCHHHHHHH
Confidence 998876643
No 321
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.5e-20 Score=141.38 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=87.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCC-CHHHHHHHHhccccc---cCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYT-SSEMLQKVLEKPLEK---KAGR-- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~-- 67 (163)
+||.+++||+++|+||||||||||+++++|.++ .|++.++|.++.... .....+..+...... ....
T Consensus 44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 123 (272)
T PRK14236 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIY 123 (272)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHH
Confidence 579999999999999999999999999999854 499999998765321 111111111000000 0000
Q ss_pred --------eecCCC----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 68 --------NFGPPG----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 68 --------~~~~~~----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..+... .+++...++.+++... ....++.+.++ |+|+ +||+++ +++.+|+++++|||
T Consensus 124 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L-----S~Gq---~qrv~laral~~~p~lllLDEP 195 (272)
T PRK14236 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGL-----SGGQ---QQRLVIARAIAIEPEVLLLDEP 195 (272)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccC-----CHHH---HHHHHHHHHHHCCCCEEEEeCC
Confidence 000000 0112223334444321 11124556677 9999 999998 89999999999999
Q ss_pred CCCcccCCchhhhceeEE
Q psy2657 133 TSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~ 150 (163)
++| ||+..+..+..+
T Consensus 196 t~g---LD~~~~~~l~~~ 210 (272)
T PRK14236 196 TSA---LDPISTLKIEEL 210 (272)
T ss_pred ccc---CCHHHHHHHHHH
Confidence 999 998877665443
No 322
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=3.3e-20 Score=153.68 Aligned_cols=136 Identities=18% Similarity=0.279 Sum_probs=86.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC----c-e-e
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG----R-N-F 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~-~-~ 69 (163)
+||++++|+.++|+||||||||||++.++|.++| |++.++|.++...+... ..+.+...... ..+ + . +
T Consensus 337 ~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~-~~~~i~~v~q~~~lf~~ti~~Ni~~~ 415 (544)
T TIGR01842 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET-FGKHIGYLPQDVELFPGTVAENIARF 415 (544)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH-HhhheEEecCCcccccccHHHHHhcc
Confidence 5799999999999999999999999999999766 99999998876544322 22211110000 000 0 0 1
Q ss_pred cCCC-CceEE---------EEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 70 GPPG-NKTMI---------YFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 70 ~~~~-~~~~~---------~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
.+.. .++.. .+++.+ ++ .+.........+ |+|| |||+++ +++.+|+++++||||++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~g~~L-----SgGq---~qrl~lARall~~~~ililDEpts~- 484 (544)
T TIGR01842 416 GENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPGGATL-----SGGQ---RQRIALARALYGDPKLVVLDEPNSN- 484 (544)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCCcCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc-
Confidence 1100 11111 111111 11 111112234455 9999 999999 99999999999999999
Q ss_pred ccCCchhhhceeEE
Q psy2657 137 FTIEPRLQRHFYVF 150 (163)
Q Consensus 137 ~~l~~~~~~~~~~~ 150 (163)
||+...+.+...
T Consensus 485 --LD~~~~~~i~~~ 496 (544)
T TIGR01842 485 --LDEEGEQALANA 496 (544)
T ss_pred --cCHHHHHHHHHH
Confidence 998877666443
No 323
>KOG0057|consensus
Probab=99.75 E-value=1.8e-20 Score=150.46 Aligned_cols=137 Identities=18% Similarity=0.293 Sum_probs=91.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-CCCeeeeeeeecCCCCHHHHHHHHhcccc--cc-----CCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-PETYALTSVPFNFYTSSEMLQKVLEKPLE--KK-----AGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~ 72 (163)
+||+|.+||-|+|+|+|||||||++|.+++.++ .|+|+++|++++..+.....+.+---+.. .+ .+..||..
T Consensus 371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP 450 (591)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC
Confidence 689999999999999999999999999999875 49999999999877655444432111100 00 01112222
Q ss_pred C--CceEEEEEecCCCCCC-----cCCC---CCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 73 G--NKTMIYFVDDMNMPEV-----DAYG---TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 73 ~--~~~~~~~l~~~~l~~~-----~~~~---~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
. .+++++..+..++.+. +.|. -..-..+ |+|| |||+++ +++.|++++++||||+. ||
T Consensus 451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L-----SGGe---kQrvslaRa~lKda~Il~~DEaTS~---LD 519 (591)
T KOG0057|consen 451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML-----SGGE---KQRVSLARAFLKDAPILLLDEATSA---LD 519 (591)
T ss_pred CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc-----ccch---HHHHHHHHHHhcCCCeEEecCcccc---cc
Confidence 1 1233333334443221 1110 1122334 9999 999999 99999999999999999 99
Q ss_pred chhhhcee
Q psy2657 141 PRLQRHFY 148 (163)
Q Consensus 141 ~~~~~~~~ 148 (163)
...-+.+-
T Consensus 520 ~~TE~~i~ 527 (591)
T KOG0057|consen 520 SETEREIL 527 (591)
T ss_pred hhhHHHHH
Confidence 77665543
No 324
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-20 Score=142.71 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=86.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee------eecCCCCHHHHHHHHhccccc---cCC-c-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV------PFNFYTSSEMLQKVLEKPLEK---KAG-R- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~-~- 67 (163)
+||.+.+||+++|+||||||||||+++|+|.++| |++.++|. +..... ....+..+...... ... .
T Consensus 29 vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv 107 (257)
T PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID-AIKLRKEVGMVFQQPNPFPHLSI 107 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC-HHHHhcceEEEccCCccCCCCcH
Confidence 5899999999999999999999999999999764 77766653 221111 11111111000000 000 0
Q ss_pred ----ee-----cCCCC----ceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 68 ----NF-----GPPGN----KTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 68 ----~~-----~~~~~----~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
.+ +.... +.+...++.+++... ....+..+.++ |+|+ +||+++ +++.+|+++++||
T Consensus 108 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L-----S~G~---~qrl~laral~~~P~llllDE 179 (257)
T PRK14246 108 YDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL-----SGGQ---QQRLTIARALALKPKVLLMDE 179 (257)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEcC
Confidence 00 00000 112344455565321 01124567777 9999 999998 9999999999999
Q ss_pred CCCCcccCCchhhhceeEEEE
Q psy2657 132 PTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~~~l 152 (163)
|++| ||+..+..+..++.
T Consensus 180 Pt~~---LD~~~~~~l~~~l~ 197 (257)
T PRK14246 180 PTSM---IDIVNSQAIEKLIT 197 (257)
T ss_pred CCcc---CCHHHHHHHHHHHH
Confidence 9999 99887666554443
No 325
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=3.4e-21 Score=150.46 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=90.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCCCC-HHHHHHHHhccc--------ccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFYTS-SEMLQKVLEKPL--------EKK 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~ 64 (163)
+||+|++||+++|+||||||||||+++++|..+ .|+|.++|.++..... ...+...+.... ...
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~ 180 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIF 180 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHH
Confidence 589999999999999999999999999999863 5999999998753211 111111111000 000
Q ss_pred CCceecCC-----CCc----eEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 65 AGRNFGPP-----GNK----TMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 65 ~~~~~~~~-----~~~----~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
....|++. ..+ .....++.+++.. .+...+..+.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 181 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~L-----SgGq---kqRl~LARAl~~~p~IlLLDEP 252 (329)
T PRK14257 181 DNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNAL-----SGGQ---QQRLCIARAIALEPEVLLMDEP 252 (329)
T ss_pred HHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccC-----CHHH---HHHHHHHHHHHhCCCEEEEeCC
Confidence 00001110 000 0112234444421 111224567777 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~l 152 (163)
+++ ||+.....+..++.
T Consensus 253 ts~---LD~~~~~~i~~~i~ 269 (329)
T PRK14257 253 TSA---LDPIATAKIEELIL 269 (329)
T ss_pred ccc---CCHHHHHHHHHHHH
Confidence 999 99888877655443
No 326
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=3.7e-20 Score=141.82 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=79.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCH---HHHHHHHhccccccCCceecCCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSS---EMLQKVLEKPLEKKAGRNFGPPGN 74 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 74 (163)
+||.+.+||+++|+||||||||||+++|+|.++| |+|.++|. .+-.+... ......+..... +. .
T Consensus 56 vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~------~~---~ 126 (282)
T cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVS------YD---E 126 (282)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccc------cC---H
Confidence 5899999999999999999999999999999766 88888762 22111110 011111110000 00 0
Q ss_pred ceEEEEEecCCCCC-------C-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 75 KTMIYFVDDMNMPE-------V-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 75 ~~~~~~l~~~~l~~-------~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
.+....++.+++.. . +...+..+.++ |+|+ +||+++ +++.+|+++++|||+++ ||+..+
T Consensus 127 ~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~L-----SgGq---~qrv~lAraL~~~p~iLiLDEPt~g---LD~~~~ 195 (282)
T cd03291 127 YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITL-----SGGQ---RARISLARAVYKDADLYLLDSPFGY---LDVFTE 195 (282)
T ss_pred HHHHHHHHHhCCHHHHHhccccccceecCCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCcc---CCHHHH
Confidence 00000011111110 0 00012234566 9999 999998 89999999999999999 998887
Q ss_pred hcee
Q psy2657 145 RHFY 148 (163)
Q Consensus 145 ~~~~ 148 (163)
..+.
T Consensus 196 ~~l~ 199 (282)
T cd03291 196 KEIF 199 (282)
T ss_pred HHHH
Confidence 7654
No 327
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.9e-20 Score=141.34 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=84.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-------CCCeeeeeeeecCC---CCHHHHHHHHhccccc---cCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-------PETYALTSVPFNFY---TSSEMLQKVLEKPLEK---KAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-------~g~i~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~ 67 (163)
+||++++||+++|+||||||||||+++++|..+ .|+|.++|.+.... ......+..+...... ....
T Consensus 35 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 114 (265)
T PRK14252 35 INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKS 114 (265)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcch
Confidence 578999999999999999999999999999853 47899988665321 1111111111100000 0000
Q ss_pred e----------ecCC---C-CceEEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 68 N----------FGPP---G-NKTMIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 68 ~----------~~~~---~-~~~~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
+ .+.. . .+++...++.+++.. .....+..+.++ |+|+ +||+++ +++.+|+++++|
T Consensus 115 v~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L-----S~G~---~qrv~laral~~~p~llllD 186 (265)
T PRK14252 115 IFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL-----SGGQ---QQRLCIARALATDPEILLFD 186 (265)
T ss_pred HHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEe
Confidence 0 0000 0 011112222333321 011113445566 9999 999998 899999999999
Q ss_pred cCCCCcccCCchhhhceeE
Q psy2657 131 NPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~~~ 149 (163)
||++| ||+.....+..
T Consensus 187 EPt~g---LD~~~~~~l~~ 202 (265)
T PRK14252 187 EPTSA---LDPIATASIEE 202 (265)
T ss_pred CCCcc---CCHHHHHHHHH
Confidence 99999 99887766543
No 328
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.74 E-value=5.4e-20 Score=156.22 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=87.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccC-----Cceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKA-----GRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~ 70 (163)
+||.+++|+.++|+|+||||||||++.++|.++| |+|.++|.++...+.....+.+ ..... ... +..++
T Consensus 476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i-~~v~q~~~lf~~ti~eNi~~~ 554 (694)
T TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM-GVVLQENVLFSRSIRDNIALC 554 (694)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC-eEEccCCeehhhhHHHHHhcC
Confidence 5899999999999999999999999999999766 9999999998766544333221 11000 000 00011
Q ss_pred -CCC-CceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PPG-NKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~~-~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+.. .+.+...++..++ |. .+.........| |+|| |||+++ +++.+|+++++||||++
T Consensus 555 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L-----SgGq---~qri~lARall~~~~ililDEpts~--- 623 (694)
T TIGR01846 555 NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL-----SGGQ---RQRIAIARALVGNPRILIFDEATSA--- 623 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC-----CHHH---HHHHHHHHHHHhCCCEEEEECCCcC---
Confidence 111 1111111222211 11 111112223456 9999 999998 99999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 624 LD~~~~~~i~ 633 (694)
T TIGR01846 624 LDYESEALIM 633 (694)
T ss_pred CCHHHHHHHH
Confidence 9987766553
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.74 E-value=4.6e-20 Score=155.20 Aligned_cols=132 Identities=13% Similarity=0.196 Sum_probs=86.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecCCCCHH-------HHHHHHhccccccCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNFYTSSE-------MLQKVLEKPLEKKAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 70 (163)
+||.|.+|++++|+||||||||||+++++|.++| |+|.++. ..+....... .+...+..... ....
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~---~~~~- 413 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQ---EVMV- 413 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcc---cccc-
Confidence 5899999999999999999999999999999765 8887732 1222221110 01111110000 0000
Q ss_pred CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
....+.+..+++.+++.... .++++.+| |+|+ |||+++ +++.+|+++++||||++ ||+..+..+.
T Consensus 414 ~~~~~~~~~~l~~~~l~~~~--~~~~~~~L-----SgGe---kqRl~la~al~~~p~lLlLDEPt~~---LD~~~~~~l~ 480 (635)
T PRK11147 414 NGRPRHVLGYLQDFLFHPKR--AMTPVKAL-----SGGE---RNRLLLARLFLKPSNLLILDEPTND---LDVETLELLE 480 (635)
T ss_pred cchHHHHHHHHHhcCCCHHH--HhChhhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCCC---CCHHHHHHHH
Confidence 00011233445566664211 15678888 9999 999998 88899999999999999 9988776654
Q ss_pred E
Q psy2657 149 V 149 (163)
Q Consensus 149 ~ 149 (163)
.
T Consensus 481 ~ 481 (635)
T PRK11147 481 E 481 (635)
T ss_pred H
Confidence 3
No 330
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.74 E-value=8e-20 Score=152.53 Aligned_cols=137 Identities=14% Similarity=0.192 Sum_probs=86.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc---ccCC-----ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE---KKAG-----RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~ 70 (163)
+||.+++|+.++|+||||||||||++.++|.++| |+|.++|.++...+.....+. +..... ...+ ..++
T Consensus 354 i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~lf~~ti~~Ni~~~ 432 (585)
T TIGR01192 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS-IATVFQDAGLFNRSIRENIRLG 432 (585)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh-eEEEccCCccCcccHHHHHhcC
Confidence 5799999999999999999999999999999776 999999988765543332222 111000 0000 0111
Q ss_pred -CCC-CceEEEEEecCC-------CCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 -PPG-NKTMIYFVDDMN-------MPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 -~~~-~~~~~~~l~~~~-------l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+.. .++....++..+ ++. .+.........+ |+|| |||+++ +++.+|+++++||||++
T Consensus 433 ~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L-----SgGq---~qrl~lARall~~p~ililDEpts~--- 501 (585)
T TIGR01192 433 REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL-----SGGE---RQRLAIARAILKNAPILVLDEATSA--- 501 (585)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEECCccC---
Confidence 110 111111111111 111 111112234456 9999 999998 99999999999999999
Q ss_pred CCchhhhceeE
Q psy2657 139 IEPRLQRHFYV 149 (163)
Q Consensus 139 l~~~~~~~~~~ 149 (163)
||+...+.+..
T Consensus 502 LD~~~~~~i~~ 512 (585)
T TIGR01192 502 LDVETEARVKN 512 (585)
T ss_pred CCHHHHHHHHH
Confidence 99888776643
No 331
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.7e-20 Score=147.53 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=90.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--ccc-----cCCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--LEK-----KAGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~ 71 (163)
+||++++|+.++|+|+||||||||++.++|.++| |++.+||.+....+...-.+.+..-+ ..- +++..++.
T Consensus 340 l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~ 419 (559)
T COG4988 340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR 419 (559)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccC
Confidence 5899999999999999999999999999999875 99999999987776555444431110 000 01111111
Q ss_pred C-C-CceEEEEEecCCCCCCcCC---CCCCHHH----HHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 72 P-G-NKTMIYFVDDMNMPEVDAY---GTVQPHT----VIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 72 ~-~-~~~~~~~l~~~~l~~~~~~---~~~~~~e----llr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
+ . .+.+...++..++.+.-.. .+..+.| + |+|| +||+++ +++.+++++++||||++ ||
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~L-----SgGQ---~QRlaLARAll~~~~l~llDEpTA~---LD 488 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGL-----SGGQ---AQRLALARALLSPASLLLLDEPTAH---LD 488 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCC-----CHHH---HHHHHHHHHhcCCCCEEEecCCccC---CC
Confidence 1 1 2233334444433221100 0222333 6 9999 999999 99999999999999999 99
Q ss_pred chhhhce
Q psy2657 141 PRLQRHF 147 (163)
Q Consensus 141 ~~~~~~~ 147 (163)
.+.-..+
T Consensus 489 ~etE~~i 495 (559)
T COG4988 489 AETEQII 495 (559)
T ss_pred HhHHHHH
Confidence 7765443
No 332
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.74 E-value=9.7e-20 Score=151.54 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=88.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc--ccccc-----CCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK--PLEKK-----AGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~ 71 (163)
+||.+++||.++|+|||||||||+++.+++.++| |+|.++|++++..+.....+.+-.- ....+ .+..++.
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~ 427 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR 427 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC
Confidence 5899999999999999999999999999999877 9999999999877655544433210 00001 1111222
Q ss_pred CC--Cce---------EEEEEecCCCCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 72 PG--NKT---------MIYFVDDMNMPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 72 ~~--~~~---------~~~~l~~~~l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
+. .++ +..+++.+ |+ .+......-..| |+|| |||+++ +++.+|+++++||||+.
T Consensus 428 ~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~L-----SgGQ---rQrlaiARall~~~~ILILDEaTSa-- 495 (567)
T COG1132 428 PDATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNL-----SGGQ---RQRLAIARALLRNPPILILDEATSA-- 495 (567)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccC-----CHHH---HHHHHHHHHHhcCCCEEEEeccccc--
Confidence 21 111 11222222 21 121112234456 9999 999999 99999999999999999
Q ss_pred cCCchhh
Q psy2657 138 TIEPRLQ 144 (163)
Q Consensus 138 ~l~~~~~ 144 (163)
+|+..-
T Consensus 496 -lD~~tE 501 (567)
T COG1132 496 -LDTETE 501 (567)
T ss_pred -cCHHhH
Confidence 887763
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=6.9e-20 Score=152.00 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=86.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeec--CCCC----HHHHHHHHhccccccCC-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFN--FYTS----SEMLQKVLEKPLEKKAG----- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~--~~~~----~~~~~~~~~~~~~~~~~----- 66 (163)
+||++++|++++|+||||||||||+++|+|.++| |+|.+++ ..+. .+.. .......+...+....+
T Consensus 24 is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~ 103 (552)
T TIGR03719 24 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRF 103 (552)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999999999999999765 8887753 1121 1110 00111111100000000
Q ss_pred ----ceecCC-------------------------CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcc
Q psy2657 67 ----RNFGPP-------------------------GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLS 117 (163)
Q Consensus 67 ----~~~~~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~ 117 (163)
..+... ..+++..+++.++++. .++++.+| |+|+ |||++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~L-----SgGq---kqrv~ 171 (552)
T TIGR03719 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP----WDADVTKL-----SGGE---RRRVA 171 (552)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc----ccCchhhc-----CHHH---HHHHH
Confidence 000000 0011223455566632 15678899 9999 99999
Q ss_pred e--EeecceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 118 L--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 118 ~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
+ +++.+|+++++||||++ ||+.....+..+
T Consensus 172 la~al~~~p~lLLLDEPt~~---LD~~~~~~l~~~ 203 (552)
T TIGR03719 172 LCRLLLSKPDMLLLDEPTNH---LDAESVAWLEQH 203 (552)
T ss_pred HHHHHhcCCCEEEEcCCCCC---CChHHHHHHHHH
Confidence 8 89999999999999999 998887665443
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.73 E-value=7.4e-20 Score=154.21 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHH---HHHHhcccc---ccCC-c----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEML---QKVLEKPLE---KKAG-R---- 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~-~---- 67 (163)
+||++++||+++|+||||||||||+++++|.++| |++.++|.++......... ...+..... .... .
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 106 (648)
T PRK10535 27 ISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQN 106 (648)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHH
Confidence 5789999999999999999999999999999766 9999999887655433221 111100000 0000 0
Q ss_pred ------eecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 68 ------NFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 68 ------~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..+. ...+++..+++.+++.+.. ++.+.++ |+|+ +||+++ +++.+|+++++|||++|
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~---~~~~~~L-----S~Gq---~qrv~LAraL~~~P~lLllDEP~~g- 174 (648)
T PRK10535 107 VEVPAVYAGLERKQRLLRAQELLQRLGLEDRV---EYQPSQL-----SGGQ---QQRVSIARALMNGGQVILADEPTGA- 174 (648)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCCC-
Confidence 0000 0111234455666665433 6777888 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEEE
Q psy2657 137 FTIEPRLQRHFYVFAL 152 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 175 --LD~~s~~~l~~ll~ 188 (648)
T PRK10535 175 --LDSHSGEEVMAILH 188 (648)
T ss_pred --CCHHHHHHHHHHHH
Confidence 99988877755543
No 335
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.73 E-value=1.2e-20 Score=147.24 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=83.4
Q ss_pred EEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCcee-----cCC---CCce
Q psy2657 13 LIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNF-----GPP---GNKT 76 (163)
Q Consensus 13 l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~-----~~~---~~~~ 76 (163)
|+||||||||||+|+|+|.++| |+|.++|.++........ .+.. +...+.......+ +.. ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999765 999999988754322110 0000 0000000000000 000 0122
Q ss_pred EEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 77 MIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 77 ~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+...++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||+..+..+..++..
T Consensus 81 ~~~~l~~~~l~~~~---~~~~~~L-----SgGq---~qRvalaraL~~~p~lllLDEP~s~---LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 81 VLEALRLVQLEEFA---DRKPHQL-----SGGQ---QQRVALARALVFKPKILLLDEPLSA---LDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHcCCcchh---cCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCCcc---CCHHHHHHHHHHHHH
Confidence 34556667775433 7788899 9999 999998 89999999999999999 998877766544433
No 336
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.3e-19 Score=124.40 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=87.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee----ecCCCCHH---HHHHHHhcc---ccccC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP----FNFYTSSE---MLQKVLEKP---LEKKA--- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~----~~~~~~~~---~~~~~~~~~---~~~~~--- 65 (163)
+||+++.||||++-||||+||||++|++.+++.| |+|++.... +-...+.+ ..+..+... +....
T Consensus 30 vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~ 109 (235)
T COG4778 30 VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVS 109 (235)
T ss_pred eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcc
Confidence 5899999999999999999999999999999654 888887543 22222222 112222110 11000
Q ss_pred -----------CceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 66 -----------GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 66 -----------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..+-......++..++..+|+|+.- .+-.|..+ |+|+ +||+.| ..+.|..++++|||
T Consensus 110 aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperL--W~LaPaTF-----SGGE---qQRVNIaRgfivd~pILLLDEP 179 (235)
T COG4778 110 ALDVVAEPLLARGVPREVARAKAADLLTRLNLPERL--WSLAPATF-----SGGE---QQRVNIARGFIVDYPILLLDEP 179 (235)
T ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHH--hcCCCccc-----CCch---heehhhhhhhhccCceEEecCC
Confidence 0110011122344567778887643 25567777 9999 999999 89999999999999
Q ss_pred CCCcccCCchhh
Q psy2657 133 TSGSFTIEPRLQ 144 (163)
Q Consensus 133 ~~g~~~l~~~~~ 144 (163)
|+. ||..-+
T Consensus 180 Tas---LDa~Nr 188 (235)
T COG4778 180 TAS---LDATNR 188 (235)
T ss_pred ccc---ccccch
Confidence 999 876543
No 337
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=6.3e-19 Score=124.12 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=82.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC-----CCCHHHHHHHHh---c-----c-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF-----YTSSEMLQKVLE---K-----P----- 60 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~-----~~~~~~~~~~~~---~-----~----- 60 (163)
+||.+.+||+++|+|+||||||||++++.+.+.| |.+.+...+-.. ...++ ....+. + +
T Consensus 25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae-RR~L~RTeWG~VhQnP~DGLR 103 (258)
T COG4107 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE-RRRLLRTEWGFVHQNPRDGLR 103 (258)
T ss_pred cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH-HHHHhhhccceeecCccccce
Confidence 6899999999999999999999999999998766 666554322111 11111 111110 0 0
Q ss_pred ccccCCceecC-----------CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEE
Q psy2657 61 LEKKAGRNFGP-----------PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFV 127 (163)
Q Consensus 61 ~~~~~~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i 127 (163)
+....+...+. .....+..+++++.++... .+..|..+ |+|+ +||+.+ .++..|.++
T Consensus 104 m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~R--iDD~PrtF-----SGGM---qQRLQiARnLVt~PrLv 173 (258)
T COG4107 104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDR--IDDLPRTF-----SGGM---QQRLQIARNLVTRPRLV 173 (258)
T ss_pred eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCccc--ccCccccc-----chHH---HHHHHHHHHhccCCceE
Confidence 00000000000 0011233455666664332 25567777 9999 999988 889999999
Q ss_pred EEecCCCCcccCCchhhhc
Q psy2657 128 SAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 128 ~~deP~~g~~~l~~~~~~~ 146 (163)
++||||+| ||-..+..
T Consensus 174 fMDEPTGG---LDVSVQAR 189 (258)
T COG4107 174 FMDEPTGG---LDVSVQAR 189 (258)
T ss_pred EecCCCCC---cchhhHHH
Confidence 99999999 88665543
No 338
>KOG3595|consensus
Probab=99.72 E-value=2.3e-17 Score=148.08 Aligned_cols=157 Identities=38% Similarity=0.687 Sum_probs=142.9
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDM 84 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (163)
...+.++.++||.|+|||-++..-+-...+.+++. .+++..++....+.+++.......+..++++..+.++.|+|++
T Consensus 124 ~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~--~~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddi 201 (1395)
T KOG3595|consen 124 LAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYL--LNFSSVTSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDI 201 (1395)
T ss_pred HHhCCeEEEEcCCCCCeeeehHHHHHhcccchheE--EeeeeeccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEecc
Confidence 45678999999999999999998888877777666 8999999999999999998888776679999999999999999
Q ss_pred CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCC-cccCCchhhhceeEEEEcCCcccc-ccC
Q psy2657 85 NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG-SFTIEPRLQRHFYVFALRLGLLRI-GSI 162 (163)
Q Consensus 85 ~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g-~~~l~~~~~~~~~~~~l~~~~~~~-~~i 162 (163)
|+|..+.|+++.+.+++||.++.++||++.+..+..+.+++++.++.|++| +.++++|++|||..+.++.|+.+- ++|
T Consensus 202 nmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r~f~~~~~~~~~~~sl~~i 281 (1395)
T KOG3595|consen 202 NMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLRHFLIVSLNYPSQESLTQI 281 (1395)
T ss_pred CCchhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHHHeeeEeeCCCChhhHHHH
Confidence 999999999999999999999999999999977899999999999998655 899999999999999999999887 555
Q ss_pred C
Q psy2657 163 Y 163 (163)
Q Consensus 163 ~ 163 (163)
|
T Consensus 282 f 282 (1395)
T KOG3595|consen 282 F 282 (1395)
T ss_pred H
Confidence 4
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=6.5e-19 Score=127.50 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=90.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHH---HHhcc-------------cc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQK---VLEKP-------------LE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~---~~~~~-------------~~ 62 (163)
+||+|.+|++|.++|.||||||||++.+.|.+.+ |+|.++|.+++..+.++.... .++.+ +.
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~ 104 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLA 104 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHH
Confidence 5899999999999999999999999999998655 999999999988776543221 11111 10
Q ss_pred --ccCCce--ecC-CCCceEE---EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 63 --KKAGRN--FGP-PGNKTMI---YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 63 --~~~~~~--~~~-~~~~~~~---~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..++.. ++. .+.++.. .-+..+++. .+...+.++.-+ |+|| ||-+++ +.+..|+++++||-
T Consensus 105 la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lg-LenrL~~~iglL-----SGGQ---RQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 105 LAESRGKKRGLSSALNERRRSSFRERLARLGLG-LENRLSDRIGLL-----SGGQ---RQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred HHHhcCcccccchhhhHHHHHHHHHHHhhcccc-hhhhhcChhhhc-----cchH---HHHHHHHHHhcCCCcEEEecch
Confidence 001100 111 1111111 112222221 111225556666 9999 998887 89999999999999
Q ss_pred CCCcccCCchhhhce
Q psy2657 133 TSGSFTIEPRLQRHF 147 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~ 147 (163)
|+. |||+....+
T Consensus 176 TAA---LDPkta~~v 187 (263)
T COG1101 176 TAA---LDPKTAEFV 187 (263)
T ss_pred hhc---CCcchHHHH
Confidence 999 999876544
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=3.3e-19 Score=160.44 Aligned_cols=134 Identities=13% Similarity=0.225 Sum_probs=87.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-----------------------------------------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP----------------------------------------------- 33 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~----------------------------------------------- 33 (163)
+||++++|+.++|+||||||||||++.+++.++
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS 1266 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999999999999999865
Q ss_pred ---------CCCeeeeeeeecCCCCHHHHHHHHhcccc---cc-----CCceecCCC--CceEE---------EEEecCC
Q psy2657 34 ---------PETYALTSVPFNFYTSSEMLQKVLEKPLE---KK-----AGRNFGPPG--NKTMI---------YFVDDMN 85 (163)
Q Consensus 34 ---------~g~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~--~~~~~---------~~l~~~~ 85 (163)
.|+|.++|.++...+.....+.+ ....+ .+ .+..|+.+. .+.+. .+++.+
T Consensus 1267 ~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i-~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~L- 1344 (1466)
T PTZ00265 1267 GEDSTVFKNSGKILLDGVDICDYNLKDLRNLF-SIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESL- 1344 (1466)
T ss_pred ccccccCCCCCeEEECCEEHHhCCHHHHHhhc-cEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC-
Confidence 48899999998776644433322 11100 00 111222111 11111 122222
Q ss_pred CCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 86 MPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 86 l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
|+- +...-..-..| |+|| |||+++ |++.+|+++++||||++ ||+...+.+.
T Consensus 1345 -P~GydT~VGe~G~~L-----SGGQ---kQRIaIARALlr~p~ILLLDEaTSa---LD~~sE~~I~ 1398 (1466)
T PTZ00265 1345 -PNKYDTNVGPYGKSL-----SGGQ---KQRIAIARALLREPKILLLDEATSS---LDSNSEKLIE 1398 (1466)
T ss_pred -ccccCCccCCCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc---cCHHHHHHHH
Confidence 111 11001122346 9999 999999 99999999999999999 9987766554
No 341
>KOG0059|consensus
Probab=99.70 E-value=6.6e-19 Score=152.55 Aligned_cols=139 Identities=16% Similarity=0.230 Sum_probs=98.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cC----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KA---- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---- 65 (163)
+|+.|++||++++.|+|||||||+++++.|..+| |++++.|..+............+..+.+. +.
T Consensus 584 ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~ 663 (885)
T KOG0059|consen 584 LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEF 663 (885)
T ss_pred eEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHH
Confidence 5789999999999999999999999999998655 99999888877665554444444332211 00
Q ss_pred ----CceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 66 ----GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 66 ----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
+++.+....+.+...++.+++.. +.+.++..+ |+|+ |+|+++ +++.+|+++++|||++| +
T Consensus 664 ~arlrG~~~~di~~~v~~ll~~~~L~~---~~~~~~~~y-----SgG~---kRkLs~aialig~p~vi~LDEPstG---m 729 (885)
T KOG0059|consen 664 YARLRGLPRSDIGSAIEKLLRLVGLGP---YANKQVRTY-----SGGN---KRRLSFAIALIGDPSVILLDEPSTG---L 729 (885)
T ss_pred HHHHcCCChhHHHHHHHHHHHHcCChh---hhccchhhC-----CCcc---hhhHHHHHHHhcCCCEEEecCCCCC---C
Confidence 01111111222334555566533 225556667 9999 998887 99999999999999999 9
Q ss_pred CchhhhceeEEEEc
Q psy2657 140 EPRLQRHFYVFALR 153 (163)
Q Consensus 140 ~~~~~~~~~~~~l~ 153 (163)
||..+|+.+.++.+
T Consensus 730 DP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 730 DPKARRHLWDIIAR 743 (885)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988655443
No 342
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=8.3e-20 Score=134.35 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=83.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec-------CCCCHHHHHHHHhccccccCCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN-------FYTSSEMLQKVLEKPLEKKAGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (163)
+||++.+||.++|+|+||||||||+|.|.|.++| |++.++|.-.+ ..+...-..++.... .+++.
T Consensus 46 isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~------~~~G~ 119 (249)
T COG1134 46 ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRG------LILGL 119 (249)
T ss_pred ceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHH------HHhCc
Confidence 6899999999999999999999999999999877 89988885432 111111111111100 11111
Q ss_pred CC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 72 PG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 72 ~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
.. .++...++ ...+...+.++|+... |.|| +-|+++ +...+|+++++||-.+- -|+.|++
T Consensus 120 ~~~ei~~~~~eIi---eFaELG~fi~~PvktY-----SSGM---~aRLaFsia~~~~pdILllDEvlav---GD~~F~~ 184 (249)
T COG1134 120 TRKEIDEKVDEII---EFAELGDFIDQPVKTY-----SSGM---YARLAFSVATHVEPDILLLDEVLAV---GDAAFQE 184 (249)
T ss_pred cHHHHHHHHHHHH---HHHHHHHHhhCchhhc-----cHHH---HHHHHHhhhhhcCCCEEEEehhhhc---CCHHHHH
Confidence 11 11111111 2233445668888888 9999 999988 88889999999999876 6666654
No 343
>KOG0055|consensus
Probab=99.70 E-value=1.1e-18 Score=151.32 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=91.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh--cccc-----ccCCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE--KPLE-----KKAGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~ 71 (163)
+||++++|+.++|||||||||||++..+...++| |+|.+||.++...+.....+.+-. +... -+.+..||.
T Consensus 1009 l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~ 1088 (1228)
T KOG0055|consen 1009 LSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS 1088 (1228)
T ss_pred CcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC
Confidence 5899999999999999999999999999999876 999999999988876665554311 1000 011233441
Q ss_pred CC--Cc---------eEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 72 PG--NK---------TMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 72 ~~--~~---------~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.. .+ .++.|+..+ |+- |..--.+-.+| |||| |||++| |++++|+++++||.|+.
T Consensus 1089 ~~vs~~eIi~Aak~ANaH~FI~sL--P~GyDT~vGerG~QL-----SGGQ---KQRIAIARAilRnPkILLLDEATSA-- 1156 (1228)
T KOG0055|consen 1089 EEVSEEEIIEAAKLANAHNFISSL--PQGYDTRVGERGVQL-----SGGQ---KQRIAIARAILRNPKILLLDEATSA-- 1156 (1228)
T ss_pred CCCCHHHHHHHHHHhhhHHHHhcC--cCcccCccCcccCcC-----CchH---HHHHHHHHHHHcCCCeeeeeccchh--
Confidence 11 11 122333322 211 11112234577 9999 999999 99999999999999999
Q ss_pred cCCchhhh
Q psy2657 138 TIEPRLQR 145 (163)
Q Consensus 138 ~l~~~~~~ 145 (163)
||...-+
T Consensus 1157 -LDseSEr 1163 (1228)
T KOG0055|consen 1157 -LDSESER 1163 (1228)
T ss_pred -hhhhhHH
Confidence 8865443
No 344
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.3e-19 Score=141.22 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=106.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHH---hccccccCCceecC---C
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVL---EKPLEKKAGRNFGP---P 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~ 72 (163)
||+++++||+|-|+|.|||||||+++.+.|...| |+|++||.+++...... .+..+ ......+. ...++ .
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~led-YR~LfSavFsDyhLF~-~ll~~e~~a 419 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED-YRKLFSAVFSDYHLFD-QLLGPEGKA 419 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHH-HHHHHHHHhhhHhhhH-hhhCCccCC
Confidence 6899999999999999999999999999999766 99999999998765333 22222 11111111 11112 2
Q ss_pred CCceEEEEEecCCCCCCcCCCCC--CHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTV--QPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~--~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
..+.+..+++.+.+..+....+. .+..+ |.|| |+|++. +++++=+++++||=.+- -||.++|.|.
T Consensus 420 s~q~i~~~LqrLel~~ktsl~d~~fs~~kL-----StGQ---kKRlAll~AllEeR~Ilv~DEWAAD---QDPaFRR~FY 488 (546)
T COG4615 420 SPQLIEKWLQRLELAHKTSLNDGRFSNLKL-----STGQ---KKRLALLLALLEERDILVLDEWAAD---QDPAFRREFY 488 (546)
T ss_pred ChHHHHHHHHHHHHhhhhcccCCccccccc-----ccch---HHHHHHHHHHHhhCCeEEeehhhcc---CChHHHHHHH
Confidence 22333345555555443322122 23344 9999 999997 99999999999998888 9999999998
Q ss_pred EEEEcCCccccccCC
Q psy2657 149 VFALRLGLLRIGSIY 163 (163)
Q Consensus 149 ~~~l~~~~~~~~~i~ 163 (163)
.-.++...+.++|||
T Consensus 489 ~~lLp~LK~qGKTI~ 503 (546)
T COG4615 489 QVLLPLLKEQGKTIF 503 (546)
T ss_pred HHHhHHHHHhCCeEE
Confidence 888887777776664
No 345
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=7.7e-19 Score=131.50 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=86.9
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHH---HHHH---------hccccccCCc
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEML---QKVL---------EKPLEKKAGR 67 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~---~~~~---------~~~~~~~~~~ 67 (163)
+|..+...+.+|.|+|||||||++|+|.|...| |.|.++|.........-.+ ++.+ ...+..+.+.
T Consensus 18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL 97 (352)
T COG4148 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNL 97 (352)
T ss_pred eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecch
Confidence 566667679999999999999999999999766 8899998776544321110 1111 1112222222
Q ss_pred eecCCCC--ceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 68 NFGPPGN--KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 68 ~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
.|+.... ..+..+++.+|+...- +++|..| |+|+ |||++| |++.+|.++++|||.+. ||.
T Consensus 98 ~YG~~~~~~~~fd~iv~lLGI~hLL---~R~P~~L-----SGGE---kQRVAIGRALLt~P~LLLmDEPLaS---LD~ 161 (352)
T COG4148 98 RYGMWKSMRAQFDQLVALLGIEHLL---DRYPGTL-----SGGE---KQRVAIGRALLTAPELLLMDEPLAS---LDL 161 (352)
T ss_pred hhhhcccchHhHHHHHHHhCcHHHH---hhCCCcc-----Ccch---hhHHHHHHHHhcCCCeeeecCchhh---ccc
Confidence 3332222 1223345556766555 7788888 9999 999999 99999999999999998 773
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.69 E-value=7.2e-19 Score=157.92 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=86.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC---C--CCeeeeeeeecCCCCH---HHHHHH-HhccccccCCcee--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP---P--ETYALTSVPFNFYTSS---EMLQKV-LEKPLEKKAGRNF-- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~--g~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~-- 69 (163)
+|+.+++||+++|+||||||||||+++++|..+ + |++.++|.++...... ...|.. ....+.......+
T Consensus 782 vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 782 VDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHH
Confidence 578999999999999999999999999999875 2 8999999886321000 000000 0000000000000
Q ss_pred ---cCC------CCceEEEEEecCCCCCCcCCCCCCHH----HHHHHHHhcCCceecCCcce--EeecceE-EEEEecCC
Q psy2657 70 ---GPP------GNKTMIYFVDDMNMPEVDAYGTVQPH----TVIRQYMDYQHWYDRQKLSL--KDIHNIM-FVSAMNPT 133 (163)
Q Consensus 70 ---~~~------~~~~~~~~l~~~~l~~~~~~~~~~~~----ellr~~~s~g~~~~~~~~~~--~~~~~~~-~i~~deP~ 133 (163)
.+. ..+++..+++.+++.+.. +..+. ++ |+|| |||+++ +++.+|+ ++++||||
T Consensus 862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~---d~~v~~~~~~L-----SgGq---rqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYA---DAVVGVPGEGL-----NVEQ---RKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhC---CCeeCCCCCCC-----CHHH---hhHHHHHHHHHcCCCeEEEEcCCC
Confidence 000 011234566666765432 33333 57 9999 999998 8999996 99999999
Q ss_pred CCcccCCchhhhce
Q psy2657 134 SGSFTIEPRLQRHF 147 (163)
Q Consensus 134 ~g~~~l~~~~~~~~ 147 (163)
+| ||+.....+
T Consensus 931 sg---LD~~~~~~i 941 (1394)
T TIGR00956 931 SG---LDSQTAWSI 941 (1394)
T ss_pred CC---CCHHHHHHH
Confidence 99 997766544
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=99.69 E-value=1.2e-18 Score=147.78 Aligned_cols=135 Identities=12% Similarity=0.112 Sum_probs=83.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc-----CCCCCeeeeeeeecCCC-CH-HH-----------HHHHH---hc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS-----LPPETYALTSVPFNFYT-SS-EM-----------LQKVL---EK 59 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~-----~~~g~i~~~~~~~~~~~-~~-~~-----------~~~~~---~~ 59 (163)
+||+|.+|+.++|+||||||||||+|+++|. ++.|+|.+..+...... +. .. ....+ ..
T Consensus 196 isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q 275 (718)
T PLN03073 196 ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQ 275 (718)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999974 23377766555432211 11 00 00000 00
Q ss_pred c--ccc--cCCceecC-----C----------------------CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcC
Q psy2657 60 P--LEK--KAGRNFGP-----P----------------------GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQ 108 (163)
Q Consensus 60 ~--~~~--~~~~~~~~-----~----------------------~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g 108 (163)
. +.. .....+.+ . ...++..+++.+++... ..++++.+| |+|
T Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~--~~~~~~~~L-----SgG 348 (718)
T PLN03073 276 QRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE--MQVKATKTF-----SGG 348 (718)
T ss_pred HHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH--HHhCchhhC-----CHH
Confidence 0 000 00000000 0 00112223444555321 125678888 999
Q ss_pred CceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 109 HWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 109 ~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
+ ++|+++ +++.+|+++++||||++ ||+.....+.
T Consensus 349 ~---k~rv~LA~aL~~~p~lLlLDEPt~~---LD~~~~~~l~ 384 (718)
T PLN03073 349 W---RMRIALARALFIEPDLLLLDEPTNH---LDLHAVLWLE 384 (718)
T ss_pred H---HHHHHHHHHHhcCCCEEEEECCCCC---CCHHHHHHHH
Confidence 9 999998 99999999999999999 9988876653
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.69 E-value=4.8e-19 Score=149.51 Aligned_cols=134 Identities=14% Similarity=0.165 Sum_probs=82.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee---eecCCCCH---HHHHHHHhccccccCCceecC-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV---PFNFYTSS---EMLQKVLEKPLEKKAGRNFGP- 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~- 71 (163)
+||++++||+++|+||||||||||+++++|.+++ |++.+++. .+-.+.+. ....+.+....... ....+
T Consensus 471 isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--~~~~~~ 548 (659)
T TIGR00954 471 LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSE--DMKRRG 548 (659)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChh--hhhccC
Confidence 5899999999999999999999999999999765 77766431 11111110 01222221111000 00001
Q ss_pred CCCceEEEEEecCCCCCCc-------CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 72 PGNKTMIYFVDDMNMPEVD-------AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 72 ~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
...+++...++.+++.+.- .. .....+| |+|| |||+++ +++.+|+++++||||++ ||+.
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~~~g~~~~-~~~~~~L-----SgGq---kQRl~iARal~~~p~illLDEpts~---LD~~ 616 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILEREGGWSAV-QDWMDVL-----SGGE---KQRIAMARLFYHKPQFAILDECTSA---VSVD 616 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhhcCCcccc-cccccCC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccC---CCHH
Confidence 1112223344444543211 00 1123466 9999 999998 99999999999999999 9988
Q ss_pred hhhcee
Q psy2657 143 LQRHFY 148 (163)
Q Consensus 143 ~~~~~~ 148 (163)
..+.+.
T Consensus 617 ~~~~l~ 622 (659)
T TIGR00954 617 VEGYMY 622 (659)
T ss_pred HHHHHH
Confidence 776653
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=9.9e-19 Score=158.09 Aligned_cols=137 Identities=14% Similarity=0.186 Sum_probs=88.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--ccccCCce-----ec-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--LEKKAGRN-----FG- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~- 70 (163)
+||++++||.++|+|+||||||||++.+++.++| |+|.++|.+++..+.....+.+-.-+ ...+.+.+ ++
T Consensus 1255 isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS 1334 (1495)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC
Confidence 5899999999999999999999999999999766 99999999998766544433321100 00001000 00
Q ss_pred CCCCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 71 PPGNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
....+++...++..++.+ .+......-..| |+|| ||++++ +++.+|+++++||||++ +|
T Consensus 1335 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L-----SgGQ---rQrlaLARALLr~~~ILILDEATSa---LD 1403 (1495)
T PLN03232 1335 EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF-----SVGQ---RQLLSLARALLRRSKILVLDEATAS---VD 1403 (1495)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCC-----CHHH---HHHHHHHHHHHhCCCEEEEECCccc---CC
Confidence 011111222222222211 111001122345 9999 999999 99999999999999999 99
Q ss_pred chhhhcee
Q psy2657 141 PRLQRHFY 148 (163)
Q Consensus 141 ~~~~~~~~ 148 (163)
+..-+.+.
T Consensus 1404 ~~Te~~Iq 1411 (1495)
T PLN03232 1404 VRTDSLIQ 1411 (1495)
T ss_pred HHHHHHHH
Confidence 77655543
No 350
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=1.2e-18 Score=157.99 Aligned_cols=136 Identities=14% Similarity=0.180 Sum_probs=87.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--ccccCCc-----ee-c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--LEKKAGR-----NF-G 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~-~ 70 (163)
+||+|++||.++|||++|||||||++.+++.++| |+|.++|.+++........+.+-.-+ ...+.+. .+ .
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~ 1337 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN 1337 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC
Confidence 5899999999999999999999999999999766 99999999998775544433321000 0000000 00 0
Q ss_pred CCCCceEEEEEecCCC-------C-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 71 PPGNKTMIYFVDDMNM-------P-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l-------~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
....+++...++..++ | ..+......-..+ |+|| ||++++ |++.+|+++++||||++ +|
T Consensus 1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nL-----SgGQ---rQrlaLARALLr~p~ILILDEATSa---LD 1406 (1622)
T PLN03130 1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF-----SVGQ---RQLLSLARALLRRSKILVLDEATAA---VD 1406 (1622)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCC-----CHHH---HHHHHHHHHHHcCCCEEEEECCCCC---CC
Confidence 1111122222222222 1 1111101122345 9999 999999 99999999999999999 99
Q ss_pred chhhhce
Q psy2657 141 PRLQRHF 147 (163)
Q Consensus 141 ~~~~~~~ 147 (163)
+..-+.+
T Consensus 1407 ~~Te~~I 1413 (1622)
T PLN03130 1407 VRTDALI 1413 (1622)
T ss_pred HHHHHHH
Confidence 7665444
No 351
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.68 E-value=2.7e-18 Score=137.11 Aligned_cols=134 Identities=17% Similarity=0.276 Sum_probs=83.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+||.+.+||.++|+||||||||||.|.+.|..+| |.|.+||-++...+.... .+++..-.+.. ..|.-...+.+.
T Consensus 355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~l-G~hiGYLPQdV--eLF~GTIaeNIa 431 (580)
T COG4618 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL-GRHIGYLPQDV--ELFDGTIAENIA 431 (580)
T ss_pred ceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHh-ccccCcCcccc--eecCCcHHHHHH
Confidence 6899999999999999999999999999999766 999999988765543333 22222110000 111111111111
Q ss_pred EEEecCCCCCC-cCCCCCCHHHHHHHH--------------HhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 79 YFVDDMNMPEV-DAYGTVQPHTVIRQY--------------MDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 79 ~~l~~~~l~~~-~~~~~~~~~ellr~~--------------~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
.|-++..-+.. +.-.-.-+||++-.+ +|+|| |||+++ ++-.+|.++++|||-++ ||.
T Consensus 432 Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ---RQRIaLARAlYG~P~lvVLDEPNsN---LD~ 505 (580)
T COG4618 432 RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ---RQRIALARALYGDPFLVVLDEPNSN---LDS 505 (580)
T ss_pred hccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH---HHHHHHHHHHcCCCcEEEecCCCCC---cch
Confidence 11111110000 000011244444332 59999 999998 99999999999999999 885
Q ss_pred hh
Q psy2657 142 RL 143 (163)
Q Consensus 142 ~~ 143 (163)
..
T Consensus 506 ~G 507 (580)
T COG4618 506 EG 507 (580)
T ss_pred hH
Confidence 43
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=1.2e-18 Score=142.70 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=87.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeec--CCC-----CHHHHHHHHhcc----------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFN--FYT-----SSEMLQKVLEKP---------- 60 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~--~~~-----~~~~~~~~~~~~---------- 60 (163)
+|+.+.+|+.++|||+||||||||+|+|.|...| |+|.... ..+. .+. .......++...
T Consensus 22 ~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred CcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHH
Confidence 5899999999999999999999999999998755 7766654 1221 111 101111111100
Q ss_pred ------cc-----------ccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eee
Q psy2657 61 ------LE-----------KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDI 121 (163)
Q Consensus 61 ------~~-----------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~ 121 (163)
+. ......-+-..+.++...+..++++.. ++++.+| |+|+ |.|+++ +++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~----~~~~~~L-----SGG~---r~Rv~LA~aL~ 169 (530)
T COG0488 102 EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE----DRPVSSL-----SGGW---RRRVALARALL 169 (530)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc----cCchhhc-----CHHH---HHHHHHHHHHh
Confidence 00 000000000112234445566676554 5778999 9999 999888 999
Q ss_pred cceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 122 HNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 122 ~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
.+|+++++||||+. ||-.....+..+.
T Consensus 170 ~~pDlLLLDEPTNH---LD~~~i~WLe~~L 196 (530)
T COG0488 170 EEPDLLLLDEPTNH---LDLESIEWLEDYL 196 (530)
T ss_pred cCCCEEEEcCCCcc---cCHHHHHHHHHHH
Confidence 99999999999999 9977665554333
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=1.2e-18 Score=156.67 Aligned_cols=129 Identities=12% Similarity=0.191 Sum_probs=85.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC----CCeeeeeeeecCCCCHHHHHHHHhc---------cccccCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP----ETYALTSVPFNFYTSSEMLQKVLEK---------PLEKKAGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 67 (163)
+|+.+++|++++|+||||||||||+++++|..++ |++.++|.+.... ..+..+.. .+......
T Consensus 899 vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~----~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 899 VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred cEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChH----HhhhheEEEccccccCCCCcHHHHH
Confidence 5789999999999999999999999999998753 7888888654311 11111000 00000000
Q ss_pred ee----c-CC------CCceEEEEEecCCCCCCcCCCCCCH-----HHHHHHHHhcCCceecCCcce--EeecceEEEEE
Q psy2657 68 NF----G-PP------GNKTMIYFVDDMNMPEVDAYGTVQP-----HTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSA 129 (163)
Q Consensus 68 ~~----~-~~------~~~~~~~~l~~~~l~~~~~~~~~~~-----~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~ 129 (163)
.+ . +. ..+.+..+++.+++.+.. +..+ ..+ |+|| |||+++ +++.+|+++++
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~---~~~vg~~~~~~L-----SgGe---rkRvsIa~aL~~~P~lL~L 1043 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK---DAIVGLPGVTGL-----STEQ---RKRLTIAVELVANPSIIFM 1043 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh---CCccCCCCCCCc-----CHHH---HHHHHHHHHHhhCCCEEEE
Confidence 00 0 00 001233466667775432 3332 467 9999 999998 99999999999
Q ss_pred ecCCCCcccCCchhhhce
Q psy2657 130 MNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 130 deP~~g~~~l~~~~~~~~ 147 (163)
||||+| ||+.....+
T Consensus 1044 DEPTsg---LD~~~a~~v 1058 (1470)
T PLN03140 1044 DEPTSG---LDARAAAIV 1058 (1470)
T ss_pred eCCCCC---CCHHHHHHH
Confidence 999999 998776654
No 354
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.67 E-value=2.3e-18 Score=155.08 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=41.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeee-eeeecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALT-SVPFNFY 47 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~-~~~~~~~ 47 (163)
+||.+++||+++|+||||||||||+++++|.++| |+|.++ +.++...
T Consensus 404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI 453 (1466)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC
Confidence 5899999999999999999999999999999776 999995 5666543
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.67 E-value=2.5e-18 Score=155.72 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=88.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcc--ccccCC----ce--ec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKP--LEKKAG----RN--FG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~--~~ 70 (163)
+||++++||.++|||++|||||||++.+++.++| |+|.++|.+++..+.......+-.-+ ...+.+ ++ ++
T Consensus 1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~ 1384 (1522)
T TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS 1384 (1522)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc
Confidence 5899999999999999999999999999999766 99999999998776544433321000 000000 00 11
Q ss_pred CCCCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 71 PPGNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
....+.+...++..++.+ .+......-..+ |+|| ||++++ +++.+++++++||||++ +|
T Consensus 1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L-----SgGQ---rQrl~LARALLr~~~ILiLDEaTSa---lD 1453 (1522)
T TIGR00957 1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL-----SVGQ---RQLVCLARALLRKTKILVLDEATAA---VD 1453 (1522)
T ss_pred CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcC-----CHHH---HHHHHHHHHHHcCCCEEEEECCccc---CC
Confidence 111122222222222211 111001112346 9999 999999 99999999999999999 99
Q ss_pred chhhhce
Q psy2657 141 PRLQRHF 147 (163)
Q Consensus 141 ~~~~~~~ 147 (163)
+..-+.+
T Consensus 1454 ~~Te~~I 1460 (1522)
T TIGR00957 1454 LETDNLI 1460 (1522)
T ss_pred HHHHHHH
Confidence 7765444
No 356
>KOG0061|consensus
Probab=99.66 E-value=3.1e-18 Score=143.20 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=84.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-----CCeeeeeeeecCCCCHH---------------HHHHHHhc-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-----ETYALTSVPFNFYTSSE---------------MLQKVLEK- 59 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-----g~i~~~~~~~~~~~~~~---------------~~~~~~~~- 59 (163)
+|..+++||+.+|+||||||||||+++++|..+. |+|.+||++........ .+++.+..
T Consensus 49 vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~ 128 (613)
T KOG0061|consen 49 VSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFS 128 (613)
T ss_pred cEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHH
Confidence 4678899999999999999999999999998653 78899984432221110 01111110
Q ss_pred -cccccCCceecCCCCceEEEEEecCCCCCCc--CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 60 -PLEKKAGRNFGPPGNKTMIYFVDDMNMPEVD--AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 60 -~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
.+.. +..+......+++..+++.+++.... ..++....-+ |+|| |+|+++ -++.||.++++||||+
T Consensus 129 A~lrl-p~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgi-----SGGE---rkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 129 ALLRL-PSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGL-----SGGE---RKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred HHhcC-CCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcc-----ccch---hhHHHHHHHHHcCCCEEEecCCCC
Confidence 0111 11111112223455667777776433 1111111235 9999 999998 8899999999999999
Q ss_pred CcccCCchhh
Q psy2657 135 GSFTIEPRLQ 144 (163)
Q Consensus 135 g~~~l~~~~~ 144 (163)
| ||+...
T Consensus 200 G---LDS~sA 206 (613)
T KOG0061|consen 200 G---LDSFSA 206 (613)
T ss_pred C---cchhhH
Confidence 9 997765
No 357
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.66 E-value=1.6e-18 Score=128.96 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=46.4
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecce--EEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI--MFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~--~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
..++.+++... ..++++.++ |+|+ +||+++ +++.+| +++++|||+++ ||+..+..+..+.
T Consensus 119 ~~l~~~~l~~~--~~~~~~~~L-----SgG~---~qrv~laral~~~p~~~llllDEPt~g---LD~~~~~~l~~~l 182 (226)
T cd03270 119 GFLVDVGLGYL--TLSRSAPTL-----SGGE---AQRIRLATQIGSGLTGVLYVLDEPSIG---LHPRDNDRLIETL 182 (226)
T ss_pred HHHHHCCCCcc--cccCccCcC-----CHHH---HHHHHHHHHHHhCCCCCEEEEeCCccC---CCHHHHHHHHHHH
Confidence 45667777542 126778899 9999 999998 777887 59999999999 9988776665443
No 358
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.66 E-value=7.9e-19 Score=128.08 Aligned_cols=119 Identities=11% Similarity=0.064 Sum_probs=72.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCC-----------CeeeeeeeecCCCCHHHHHHHHhccccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE-----------TYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (163)
+++.+.+| +++|+||||||||||++++.+.+++. ++.+.+.+..... .....+.++
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~vf 82 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPA------------NFAEVTLTF 82 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCC------------ceEEEEEEE
Confidence 46788999 99999999999999999999886432 2323332221100 000011122
Q ss_pred cCCCC-------ceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eee----cceEEEEEecCCCCc
Q psy2657 70 GPPGN-------KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDI----HNIMFVSAMNPTSGS 136 (163)
Q Consensus 70 ~~~~~-------~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~----~~~~~i~~deP~~g~ 136 (163)
..... +++..+++. ..+.+.++.++ |+|+ +|++++ +++ .+|+++++|||+++
T Consensus 83 q~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~L-----S~G~---kqrl~la~~l~~~~~~~~~illlDEP~~~- 147 (197)
T cd03278 83 DNSDGRYSIISQGDVSEIIEA------PGKKVQRLSLL-----SGGE---KALTALALLFAIFRVRPSPFCVLDEVDAA- 147 (197)
T ss_pred EcCCCceeEEehhhHHHHHhC------CCccccchhhc-----CHHH---HHHHHHHHHHHHhccCCCCEEEEeCCccc-
Confidence 21111 111111222 12236678888 9999 999998 332 46699999999999
Q ss_pred ccCCchhhhceeE
Q psy2657 137 FTIEPRLQRHFYV 149 (163)
Q Consensus 137 ~~l~~~~~~~~~~ 149 (163)
+|+.....+..
T Consensus 148 --LD~~~~~~l~~ 158 (197)
T cd03278 148 --LDDANVERFAR 158 (197)
T ss_pred --CCHHHHHHHHH
Confidence 99886655533
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.65 E-value=5.1e-18 Score=153.76 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=88.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc--cccCCc----e--ec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL--EKKAGR----N--FG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~--~~ 70 (163)
+||+|++||.++|+|++|||||||++.+++.++| |+|.++|.+++..+.....+.+-.-+. ..+.+. + +.
T Consensus 1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~ 1408 (1560)
T PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408 (1560)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc
Confidence 6899999999999999999999999999999766 999999999987765443332211000 000000 0 00
Q ss_pred CCCCceEEEEEecCCCCCC-----cCCC---CCCHHHHHHHHHhcCCceecCCcce--Eeecc-eEEEEEecCCCCcccC
Q psy2657 71 PPGNKTMIYFVDDMNMPEV-----DAYG---TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN-IMFVSAMNPTSGSFTI 139 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~~-----~~~~---~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~-~~~i~~deP~~g~~~l 139 (163)
....+.+...++..++.+. +.+. ...-..| |+|| ||++++ +++.+ ++++++||||++ +
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nL-----SgGQ---rQrLaLARALL~~~~~ILlLDEATSa---L 1477 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNY-----SVGQ---RQLMCMARALLKKGSGFILMDEATAN---I 1477 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcC-----CHHH---HHHHHHHHHHhcCCCCEEEEeCCCcc---C
Confidence 1111222223333333210 0110 1112345 9999 999999 88885 899999999999 9
Q ss_pred Cchhhhcee
Q psy2657 140 EPRLQRHFY 148 (163)
Q Consensus 140 ~~~~~~~~~ 148 (163)
|+..-+.+.
T Consensus 1478 D~~te~~Iq 1486 (1560)
T PTZ00243 1478 DPALDRQIQ 1486 (1560)
T ss_pred CHHHHHHHH
Confidence 987765543
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.65 E-value=6.7e-18 Score=152.66 Aligned_cols=136 Identities=17% Similarity=0.225 Sum_probs=87.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhcc--ccccCC----ce--ecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKP--LEKKAG----RN--FGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~--~~~ 71 (163)
+||+|++||.++|+|++|||||||++++++.+++ |+|.++|.+++........+.+-.-+ ...+.+ ++ +..
T Consensus 1238 is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~ 1317 (1490)
T TIGR01271 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ 1317 (1490)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccC
Confidence 5899999999999999999999999999998754 99999999998665444333221000 000000 00 011
Q ss_pred CCCceEEEEEecCCCCCC--------cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCc
Q psy2657 72 PGNKTMIYFVDDMNMPEV--------DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEP 141 (163)
Q Consensus 72 ~~~~~~~~~l~~~~l~~~--------~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~ 141 (163)
...+++...++.+++.+. +......-..+ |+|| ||++++ +++.+++++++||||++ +|+
T Consensus 1318 ~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nL-----SgGQ---rQrL~LARALLr~~~ILlLDEaTS~---lD~ 1386 (1490)
T TIGR01271 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL-----SNGH---KQLMCLARSILSKAKILLLDEPSAH---LDP 1386 (1490)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcC-----CHHH---HHHHHHHHHHhCCCCEEEEeCCccc---CCH
Confidence 111223333444443211 10001111134 9999 999998 99999999999999999 997
Q ss_pred hhhhce
Q psy2657 142 RLQRHF 147 (163)
Q Consensus 142 ~~~~~~ 147 (163)
..-+.+
T Consensus 1387 ~Te~~I 1392 (1490)
T TIGR01271 1387 VTLQII 1392 (1490)
T ss_pred HHHHHH
Confidence 765444
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.64 E-value=2.3e-18 Score=141.11 Aligned_cols=130 Identities=16% Similarity=0.257 Sum_probs=88.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecCCCCHHHHH----HHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNFYTSSEMLQ----KVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 73 (163)
+||.+.+|+.++|+||||+|||||+|.++|...| |.|.+.. ..+...+...... ..++ .+.. .+....
T Consensus 341 ~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d-~l~~----~~~~~~ 415 (530)
T COG0488 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLE-ELSE----GFPDGD 415 (530)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHH-HHHh----hCcccc
Confidence 5889999999999999999999999999998655 6665432 3333332222000 0111 0111 000001
Q ss_pred CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 74 NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 74 ~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
...+..++..++++..+. .+++..| |+|+ |.|+.+ .+...|.++++||||+. ||...+..+.
T Consensus 416 e~~~r~~L~~f~F~~~~~--~~~v~~L-----SGGE---k~Rl~La~ll~~~pNvLiLDEPTNh---LDi~s~~aLe 479 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQ--EKPVGVL-----SGGE---KARLLLAKLLLQPPNLLLLDEPTNH---LDIESLEALE 479 (530)
T ss_pred HHHHHHHHHHcCCChHHH--hCchhhc-----CHhH---HHHHHHHHHhccCCCEEEEcCCCcc---CCHHHHHHHH
Confidence 344556777888877653 5678888 9999 999988 77789999999999999 9877765543
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.64 E-value=5.8e-17 Score=145.87 Aligned_cols=136 Identities=10% Similarity=0.160 Sum_probs=87.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-----CCCeeeeeeeecCCCCH---------------HHHHHHHhcc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-----PETYALTSVPFNFYTSS---------------EMLQKVLEKP 60 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-----~g~i~~~~~~~~~~~~~---------------~~~~~~~~~~ 60 (163)
+|+.+++||.++|+||||||||||+|+++|.++ .|+|.++|.++...... ....+.+.-.
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH
Confidence 578999999999999999999999999999864 38899998765321100 0011111100
Q ss_pred cccc-CCceec----C-CCC--------ce------------------EEEEEecCCCCCCc--CCCCCCHHHHHHHHHh
Q psy2657 61 LEKK-AGRNFG----P-PGN--------KT------------------MIYFVDDMNMPEVD--AYGTVQPHTVIRQYMD 106 (163)
Q Consensus 61 ~~~~-~~~~~~----~-~~~--------~~------------------~~~~l~~~~l~~~~--~~~~~~~~ellr~~~s 106 (163)
.... .+..+. . ..+ .. ...+++.+++.... ..++..+..+ |
T Consensus 264 a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl-----S 338 (1470)
T PLN03140 264 ARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI-----S 338 (1470)
T ss_pred HHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC-----C
Confidence 0000 000000 0 000 00 11245567775432 1235566777 9
Q ss_pred cCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 107 YQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 107 ~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
+|| |||+++ +++.+|+++++||||+| ||+.....+
T Consensus 339 GGe---rkRVsia~aL~~~p~vlllDEPTsG---LDs~t~~~i 375 (1470)
T PLN03140 339 GGQ---KKRVTTGEMIVGPTKTLFMDEISTG---LDSSTTYQI 375 (1470)
T ss_pred ccc---ceeeeehhhhcCCCcEEEEeCCCcC---ccHHHHHHH
Confidence 999 999999 89999999999999999 997765544
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.64 E-value=7.5e-18 Score=151.46 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=87.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC------CCCCeeeeeeeecCCCCH------H-----------HHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL------PPETYALTSVPFNFYTSS------E-----------MLQKVL 57 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~------~~g~i~~~~~~~~~~~~~------~-----------~~~~~~ 57 (163)
+|+.+++||.++|+||||||||||+|++.|.. ..|+|.++|.++...... . ...+.+
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 57899999999999999999999999999975 249999999775321100 0 000011
Q ss_pred hcccccc-CCcee-cCCC---CceE-EEEEecCCCCCCc--CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEE
Q psy2657 58 EKPLEKK-AGRNF-GPPG---NKTM-IYFVDDMNMPEVD--AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFV 127 (163)
Q Consensus 58 ~~~~~~~-~~~~~-~~~~---~~~~-~~~l~~~~l~~~~--~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i 127 (163)
.-....+ ..... +... .++. ..+++.+++.+.. ..++..+..+ |+|| |||+++ +++.+|+++
T Consensus 160 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~L-----SGGe---rkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 160 DFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGV-----SGGE---RKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCC-----Cccc---chHHHHHHHHHhCCCEE
Confidence 0000000 00000 0000 0111 2356677775432 1234456678 9999 999999 899999999
Q ss_pred EEecCCCCcccCCchhhhce
Q psy2657 128 SAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 128 ~~deP~~g~~~l~~~~~~~~ 147 (163)
++||||+| ||+.....+
T Consensus 232 llDEPTsg---LD~~~~~~i 248 (1394)
T TIGR00956 232 CWDNATRG---LDSATALEF 248 (1394)
T ss_pred EEeCCCCC---cCHHHHHHH
Confidence 99999999 998755443
No 364
>KOG0056|consensus
Probab=99.63 E-value=1.2e-16 Score=127.64 Aligned_cols=137 Identities=15% Similarity=0.268 Sum_probs=84.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecCCCCHHHHHHHHhcccc--ccC-----CceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNFYTSSEMLQKVLEKPLE--KKA-----GRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~ 71 (163)
+||.+.+|+.++++||||+||||++|.+....+ .|.|.++|+++...+.....+.+---+.. .+. +.-|+.
T Consensus 557 isF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak 636 (790)
T KOG0056|consen 557 ISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK 636 (790)
T ss_pred ceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC
Confidence 689999999999999999999999999999854 59999999999877655554433111100 000 001111
Q ss_pred CC--Cce------EEEEEec-CCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 72 PG--NKT------MIYFVDD-MNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 72 ~~--~~~------~~~~l~~-~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
+. .+. +..+=|. +.+|+ .| +.++.|- --.+|+|+ |||+++ +++.+|.++++||.|+. ||
T Consensus 637 ~~AsneevyaAAkAA~IHdrIl~fPe--gY-~t~VGER-GLkLSGGE---KQRVAiARtiLK~P~iIlLDEATSA---LD 706 (790)
T KOG0056|consen 637 PSASNEEVYAAAKAAQIHDRILQFPE--GY-NTRVGER-GLKLSGGE---KQRVAIARTILKAPSIILLDEATSA---LD 706 (790)
T ss_pred CCCChHHHHHHHHHhhHHHHHhcCch--hh-hhhhhhc-ccccCCcc---hhhHHHHHHHhcCCcEEEEcchhhh---cC
Confidence 11 000 0000000 11111 11 0011110 00159999 999999 89999999999999999 88
Q ss_pred chhhhce
Q psy2657 141 PRLQRHF 147 (163)
Q Consensus 141 ~~~~~~~ 147 (163)
...-|.+
T Consensus 707 T~tER~I 713 (790)
T KOG0056|consen 707 TNTERAI 713 (790)
T ss_pred CccHHHH
Confidence 6555443
No 365
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.60 E-value=2.6e-17 Score=149.14 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=84.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCH----HHHHHHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSS----EMLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
+||.+++|+.++|+||||||||||+++++|.++| |++.++|. .+-.+.+. ....++..+. -+....
T Consensus 657 isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~-------~~~~~~ 729 (1522)
T TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGK-------ALNEKY 729 (1522)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCC-------ccCHHH
Confidence 5789999999999999999999999999999766 88888762 22222211 1111111110 000000
Q ss_pred Cc---eEEEEEecCCC-CCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhc
Q psy2657 74 NK---TMIYFVDDMNM-PEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 74 ~~---~~~~~l~~~~l-~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~ 146 (163)
-+ +.....++++. +.. +........+| |+|| |||+++ ++..+|+++++|||+++ ||+...++
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L-----SGGQ---kqRiaLARAl~~~~~illLDEp~sa---LD~~~~~~ 798 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNL-----SGGQ---KQRVSLARAVYSNADIYLFDDPLSA---VDAHVGKH 798 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---cCHHHHHH
Confidence 00 11222333332 211 11113346678 9999 999999 99999999999999999 99988766
Q ss_pred eeE
Q psy2657 147 FYV 149 (163)
Q Consensus 147 ~~~ 149 (163)
+..
T Consensus 799 i~~ 801 (1522)
T TIGR00957 799 IFE 801 (1522)
T ss_pred HHH
Confidence 543
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=2.2e-17 Score=149.32 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=82.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCC----HHHHHHHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTS----SEMLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
+||.+++|+.++|+||||||||||+++++|.++| |+|.++|. .+-.+.. .....++..+. . .....+.. .
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~-~-~~~~~~~~-~ 521 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGL-S-YDEYRYTS-V 521 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhcc-c-cchHHHHH-H
Confidence 5789999999999999999999999999999766 88888762 2222221 11222221110 0 00000000 0
Q ss_pred CceEEEEEecCC-CCCCc-CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 74 NKTMIYFVDDMN-MPEVD-AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 74 ~~~~~~~l~~~~-l~~~~-~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
. +.....+++. ++..+ .........| |+|| |||+++ ++..+|+++++|||+++ ||+...+++.
T Consensus 522 ~-~~~~L~~~l~~l~~g~~t~vg~~g~~L-----SgGq---kqRi~lARAl~~~~~illLDep~sa---LD~~~~~~i~ 588 (1490)
T TIGR01271 522 I-KACQLEEDIALFPEKDKTVLGEGGITL-----SGGQ---RARISLARAVYKDADLYLLDSPFTH---LDVVTEKEIF 588 (1490)
T ss_pred H-HHHhHHHHHHhccccccccccCcCCCc-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---CCHHHHHHHH
Confidence 0 0001111221 11111 0112235567 9999 999999 99999999999999999 9998887764
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.55 E-value=1e-16 Score=145.46 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=78.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecCCCCH----HHHHHHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNFYTSS----EMLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
+||.+++|+.++|+||||||||||+++++|.++| |++.+.+ ..+-.+... ....++.... .. ...-+....
T Consensus 679 isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~-~~-~~~~~~~~~ 756 (1560)
T PTZ00243 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFD-EE-DAARLADAV 756 (1560)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCC-hh-hHHHHHHHH
Confidence 5789999999999999999999999999999766 7776532 111122111 1111111100 00 000000000
Q ss_pred C-ceEEEEEecC--CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 74 N-KTMIYFVDDM--NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 74 ~-~~~~~~l~~~--~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
. ..+...++.+ ++... ......+| |+|| |||+++ ++..+|+++++|||+++ ||+...+++
T Consensus 757 ~~~~l~~~l~~l~~g~~t~---i~~~g~~L-----SGGQ---kqRvaLARAl~~~p~illLDEP~sa---LD~~~~~~i 821 (1560)
T PTZ00243 757 RVSQLEADLAQLGGGLETE---IGEKGVNL-----SGGQ---KARVSLARAVYANRDVYLLDDPLSA---LDAHVGERV 821 (1560)
T ss_pred HHhhhHHHHHHhhccchHH---hcCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEcCcccc---CCHHHHHHH
Confidence 0 0000111112 22111 13446677 9999 999999 99999999999999999 998765443
No 368
>PLN03232 ABC transporter C family member; Provisional
Probab=99.53 E-value=3.2e-16 Score=142.01 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=77.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec--CCCCH----HHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN--FYTSS----EMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||.+++|+.++|+||+|||||||++.++|.++| |.+......++ .+.+. ....++..+. -+...
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~-------~~~~e 708 (1495)
T PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS-------DFESE 708 (1495)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCC-------ccCHH
Confidence 5899999999999999999999999999999876 54432222222 22221 1122221110 00000
Q ss_pred CCce---EEEEEecC-CCCCCc-CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 73 GNKT---MIYFVDDM-NMPEVD-AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 73 ~~~~---~~~~l~~~-~l~~~~-~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
.-++ .+...+++ .+|+-+ ......-..| |||| |||+++ |+..+++++++|||+++ ||+...+
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L-----SGGQ---kQRIaLARAly~~~~IlLLDEptSa---LD~~t~~ 777 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI-----SGGQ---KQRVSMARAVYSNSDIYIFDDPLSA---LDAHVAH 777 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCccc-----CHHH---HHHHHHHHHHhcCCCEEEEcCCccc---cCHHHHH
Confidence 0000 01111122 122211 1111123357 9999 999999 99999999999999999 9988765
Q ss_pred ce
Q psy2657 146 HF 147 (163)
Q Consensus 146 ~~ 147 (163)
++
T Consensus 778 ~I 779 (1495)
T PLN03232 778 QV 779 (1495)
T ss_pred HH
Confidence 44
No 369
>KOG0927|consensus
Probab=99.51 E-value=1e-15 Score=123.28 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=82.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecCCCCHHHHHHHHhc-cccccCCceecC-CCCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNFYTSSEMLQKVLEK-PLEKKAGRNFGP-PGNK 75 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 75 (163)
++|-+..++.+++|||||||||||+|.++|.+.| |.+.-.. ..+..+......+..+.. .++... ..|.. ...+
T Consensus 409 l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~-~~~~~~~~~e 487 (614)
T KOG0927|consen 409 LNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMM-PKFPDEKELE 487 (614)
T ss_pred hhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHH-HhccccchHH
Confidence 3678899999999999999999999999999877 5543321 112211111111100000 000000 01111 1122
Q ss_pred eEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 76 TMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 76 ~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
.+..++..+|+.... .+.+..+| |.|+ |.|+.| ..+..|.++++||||++ ||.....
T Consensus 488 ~~r~ilgrfgLtgd~--q~~p~~~L-----S~Gq---r~rVlFa~l~~kqP~lLlLDEPtnh---LDi~tid 546 (614)
T KOG0927|consen 488 EMRSILGRFGLTGDA--QVVPMSQL-----SDGQ---RRRVLFARLAVKQPHLLLLDEPTNH---LDIETID 546 (614)
T ss_pred HHHHHHHHhCCCccc--cccchhhc-----cccc---chhHHHHHHHhcCCcEEEecCCCcC---CCchhHH
Confidence 344566777886432 16778888 9999 999988 78889999999999999 8865543
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=99.50 E-value=6.4e-15 Score=134.16 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=78.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC---CCeeeee-eeecCCCCH----HHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP---ETYALTS-VPFNFYTSS----EMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~---g~i~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||.+++|+.++|+||+|||||||++.++|.+++ |++.+.+ ..+-.+.+. ....++..+.. +...
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e 708 (1622)
T PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSP-------FDPE 708 (1622)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCc-------ccHH
Confidence 5899999999999999999999999999999765 5666543 112222211 11222211100 0000
Q ss_pred CCc---eEEEEEecC-CCCCCc-CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 73 GNK---TMIYFVDDM-NMPEVD-AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 73 ~~~---~~~~~l~~~-~l~~~~-~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
.-+ +.+...+++ .+|+-+ ......-..| |||| |||+++ |+..+++++++|||+++ ||+...+
T Consensus 709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L-----SGGQ---KQRIaLARAly~~~~IlLLDEptSA---LD~~~~~ 777 (1622)
T PLN03130 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNI-----SGGQ---KQRVSMARAVYSNSDVYIFDDPLSA---LDAHVGR 777 (1622)
T ss_pred HHHHHHHHhCcHHHHHhCCCcccccccCCCCCC-----CHHH---HHHHHHHHHHhCCCCEEEECCCccc---cCHHHHH
Confidence 000 011111122 122211 0001123346 9999 999999 99999999999999999 9988765
Q ss_pred ce
Q psy2657 146 HF 147 (163)
Q Consensus 146 ~~ 147 (163)
++
T Consensus 778 ~I 779 (1622)
T PLN03130 778 QV 779 (1622)
T ss_pred HH
Confidence 53
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.49 E-value=3.9e-15 Score=105.12 Aligned_cols=128 Identities=12% Similarity=0.180 Sum_probs=82.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhcc--------ccccCC-ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKP--------LEKKAG-RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~ 70 (163)
+|..+..||++-++||||||||||+-.+.|.++. |+|.+.|.+.......+..+....-. +..+.. ..+.
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q 97 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ 97 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence 4678899999999999999999999999999765 99999999987665555443321110 001110 1122
Q ss_pred CCCC--ceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eee-------cceEEEEEecCCCCcccC
Q psy2657 71 PPGN--KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDI-------HNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 71 ~~~~--~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~-------~~~~~i~~deP~~g~~~l 139 (163)
|... ..+.++.+.+++.++- .+...++ |+|+| ||+.+ ..+ .+-+++++|||-++ |
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL---~Rs~~qL-----SGGEW---QRVRLAav~LQv~Pd~NP~~~LLllDEP~~~---L 163 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKL---GRSTNQL-----SGGEW---QRVRLAAVVLQITPDANPAGQLLLLDEPMNS---L 163 (248)
T ss_pred chHHHHHHHHHHHhhhcccchh---hhhhhhc-----Ccccc---eeeEEeEEEEEecCCCCccceeEEecCCCcc---h
Confidence 2211 1223445556666554 6678888 99995 44433 111 13489999999998 7
Q ss_pred Cch
Q psy2657 140 EPR 142 (163)
Q Consensus 140 ~~~ 142 (163)
|..
T Consensus 164 DvA 166 (248)
T COG4138 164 DVA 166 (248)
T ss_pred hHH
Confidence 743
No 372
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=9.7e-16 Score=111.16 Aligned_cols=136 Identities=14% Similarity=0.215 Sum_probs=91.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC------CCeeeeeeeecCCCCHHHH-------HHHHhcccc-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP------ETYALTSVPFNFYTSSEML-------QKVLEKPLE----- 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~------g~i~~~~~~~~~~~~~~~~-------~~~~~~~~~----- 62 (163)
+|+++.+||+-+++|+||||||.++++|.|.... ....+++.+.-..++.+.. .+++..+..
T Consensus 26 v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS 105 (330)
T COG4170 26 VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPS 105 (330)
T ss_pred eeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChH
Confidence 5889999999999999999999999999998643 3444455444333322211 112221110
Q ss_pred ---------ccCCceecC------CC-CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecce
Q psy2657 63 ---------KKAGRNFGP------PG-NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI 124 (163)
Q Consensus 63 ---------~~~~~~~~~------~~-~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~ 124 (163)
......|.. .. .+++.+++..+|+.+-...+..+|.|+ ..|+ -|++.+ |++..|
T Consensus 106 ~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~El-----TeGE---~QKVMIA~A~AnqP 177 (330)
T COG4170 106 ERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYEL-----TEGE---CQKVMIAIALANQP 177 (330)
T ss_pred HHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchh-----ccCc---ceeeeeehhhccCC
Confidence 011111111 11 345667888899877655557789999 8898 788776 888899
Q ss_pred EEEEEecCCCCcccCCchhhhce
Q psy2657 125 MFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 125 ~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
.++++||||+. ++|....++
T Consensus 178 rLLIADEPTN~---~e~~Tq~Qi 197 (330)
T COG4170 178 RLLIADEPTNS---MEPTTQAQI 197 (330)
T ss_pred ceEeccCCCcc---cCccHHHHH
Confidence 99999999999 887776554
No 373
>KOG0054|consensus
Probab=99.47 E-value=1.8e-14 Score=127.44 Aligned_cols=132 Identities=16% Similarity=0.254 Sum_probs=85.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHH--HhccccccCCce---ecCC-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKV--LEKPLEKKAGRN---FGPP- 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~- 72 (163)
+||.|++||.|+|||..|||||||+.++....+| |+|.+||.+++...-.....++ |.+....+.+.+ ..|.
T Consensus 1159 is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~ 1238 (1381)
T KOG0054|consen 1159 ISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD 1238 (1381)
T ss_pred ceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc
Confidence 6899999999999999999999999999998764 9999999999887655554442 111111111111 0110
Q ss_pred --CCceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 73 --GNKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 73 --~~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
..+++-..+|..++ |. .+..-..--..+ |-|| ||.+++ |++++.+++++||.|+. +|
T Consensus 1239 e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~-----SvGQ---RQLlCLARALLr~skILvLDEATAs---VD 1307 (1381)
T KOG0054|consen 1239 EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF-----SVGQ---RQLLCLARALLRKSKILVLDEATAS---VD 1307 (1381)
T ss_pred ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC-----ChHH---HHHHHHHHHHhccCCEEEEeccccc---CC
Confidence 01111122222222 11 111001112234 7788 999888 99999999999999999 88
Q ss_pred chh
Q psy2657 141 PRL 143 (163)
Q Consensus 141 ~~~ 143 (163)
++.
T Consensus 1308 ~~T 1310 (1381)
T KOG0054|consen 1308 PET 1310 (1381)
T ss_pred hHH
Confidence 654
No 374
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=1.9e-14 Score=106.15 Aligned_cols=58 Identities=9% Similarity=-0.066 Sum_probs=41.6
Q ss_pred EEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eee----cceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 80 FVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDI----HNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 80 ~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~----~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+.+.+++++.. +.++..+ |+|+ ++++++ +++ ..|+++++|||++| +|+.....+....
T Consensus 111 ~~~~~~L~~~~---~~~~~~l-----S~G~---~~r~~la~al~~~~~~~p~ililDEPt~g---LD~~~~~~l~~~l 174 (212)
T cd03274 111 VEQIAQMPKKS---WKNISNL-----SGGE---KTLSSLALVFALHHYKPTPLYVMDEIDAA---LDFRNVSIVANYI 174 (212)
T ss_pred EEEeecccccc---ccchhhc-----CHHH---HHHHHHHHHHHhcccCCCCEEEEcCCCcC---CCHHHHHHHHHHH
Confidence 44555554433 5567777 9999 999998 343 24799999999999 9987776665433
No 375
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.47 E-value=3.3e-14 Score=104.30 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=68.9
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHH----hcCCCCCeeeeeeeecCCCCHHHHHHHHhc-cccccCCceecCCCCce
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKML----SSLPPETYALTSVPFNFYTSSEMLQKVLEK-PLEKKAGRNFGPPGNKT 76 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~----~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 76 (163)
++.+.+| +++|+||||||||||++++. |..+++...+.+ .. ..+.. .....-...|.....+.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~-------~~----~~i~~~~~~~~v~~~f~~~~~~~ 84 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAH-------DP----KLIREGEVRAQVKLAFENANGKK 84 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccc-------hH----HHHhCCCCcEEEEEEEEeCCCCE
Confidence 3566777 99999999999999999884 665543221110 00 00000 00000011121111111
Q ss_pred EE-----EEEecCCCCCC---cCCCCCCHHHHHHHHHhcCCceecCC------cce--EeecceEEEEEecCCCCcccCC
Q psy2657 77 MI-----YFVDDMNMPEV---DAYGTVQPHTVIRQYMDYQHWYDRQK------LSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 77 ~~-----~~l~~~~l~~~---~~~~~~~~~ellr~~~s~g~~~~~~~------~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
.. .+.+++.+... +...+..+.++ |+|+ +++ +++ +++.+|+++++|||+++ ||
T Consensus 85 ~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~L-----S~G~---~~~~~la~rlala~al~~~p~illlDEP~~~---LD 153 (204)
T cd03240 85 YTITRSLAILENVIFCHQGESNWPLLDMRGRC-----SGGE---KVLASLIIRLALAETFGSNCGILALDEPTTN---LD 153 (204)
T ss_pred EEEEEEhhHhhceeeechHHHHHHHhcCcccc-----CccH---HHHHHHHHHHHHHHHhccCCCEEEEcCCccc---cC
Confidence 11 11222211100 01113345566 9999 886 444 77889999999999999 99
Q ss_pred chhhh-ceeEEE
Q psy2657 141 PRLQR-HFYVFA 151 (163)
Q Consensus 141 ~~~~~-~~~~~~ 151 (163)
+.... .+..+.
T Consensus 154 ~~~~~~~l~~~l 165 (204)
T cd03240 154 EENIEESLAEII 165 (204)
T ss_pred HHHHHHHHHHHH
Confidence 87776 554433
No 376
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.46 E-value=9.5e-16 Score=126.12 Aligned_cols=136 Identities=14% Similarity=0.238 Sum_probs=85.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeee-eee--ecC---CCCHHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALT-SVP--FNF---YTSSEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~-~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
.++.+++|+.+.|.||||||||||+|+|.|.-|- |++..- +.+ |-+ +-+.-.+++.+..+.... .-
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~------~~ 485 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP------DF 485 (604)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC------CC
Confidence 4788999999999999999999999999999654 443332 111 101 111112333332221110 01
Q ss_pred CCceEEEEEecCCCCCCcCCC---CCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYG---TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~---~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
..+.+...+.++++++..... +.=-.. +|+|+ +||+++ .++++|+++++||-|++ ||+.....+
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~v-----LS~GE---qQRlafARilL~kP~~v~LDEATsA---LDe~~e~~l 554 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRV-----LSGGE---QQRLAFARLLLHKPKWVFLDEATSA---LDEETEDRL 554 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhh-----cChhH---HHHHHHHHHHHcCCCEEEEecchhc---cChHHHHHH
Confidence 223455566666665432110 111223 49999 999999 88999999999999999 998887665
Q ss_pred eEEEEc
Q psy2657 148 YVFALR 153 (163)
Q Consensus 148 ~~~~l~ 153 (163)
.....+
T Consensus 555 ~q~l~~ 560 (604)
T COG4178 555 YQLLKE 560 (604)
T ss_pred HHHHHh
Confidence 444333
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=2.3e-14 Score=107.46 Aligned_cols=46 Identities=4% Similarity=-0.015 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eee----cceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDI----HNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~----~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
+.++.++ |+|+ +|++++ +++ .+|+++++|||+++ +|+...+.+...
T Consensus 153 ~~~~~~l-----S~G~---~~r~~la~~l~~~~~~~~~illlDEp~~~---ld~~~~~~~~~~ 204 (243)
T cd03272 153 QQEMQQL-----SGGQ---KSLVALALIFAIQKCDPAPFYLFDEIDAA---LDAQYRTAVANM 204 (243)
T ss_pred ccccccc-----CHHH---HHHHHHHHHHHHhccCCCCEEEEECCccC---CCHHHHHHHHHH
Confidence 4567777 9999 999998 443 35899999999999 999877666443
No 378
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.45 E-value=1.5e-14 Score=114.75 Aligned_cols=120 Identities=10% Similarity=0.174 Sum_probs=78.3
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCH------HHHHHHHhccccc-cCCceecCCCCce
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSS------EMLQKVLEKPLEK-KAGRNFGPPGNKT 76 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~ 76 (163)
.+..||+++++||||.||||+++.+.|.+.|.+....+..++.-+.. ..++..+...... .....|
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~------- 435 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYF------- 435 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchh-------
Confidence 46789999999999999999999999998773322333333322211 1111111111111 111122
Q ss_pred EEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 77 MIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 77 ~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
-.++++-++++..- ++++.+| |+|+ .||+++ ++..+.++.++|||++. ||...+
T Consensus 436 ~~ei~~pl~l~~i~---e~~v~~L-----SGGE---LQRvaIaa~L~reADlYllDEPSA~---LDvEqR 491 (591)
T COG1245 436 KTEIVKPLNLEDLL---ERPVDEL-----SGGE---LQRVAIAAALSREADLYLLDEPSAY---LDVEQR 491 (591)
T ss_pred HHhhcCccchHHHH---hcccccC-----Cchh---HHHHHHHHHhccccCEEEecCchhh---ccHHHH
Confidence 12344456665443 7888899 9999 999998 88999999999999999 885443
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.44 E-value=2.5e-14 Score=105.54 Aligned_cols=44 Identities=9% Similarity=-0.087 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeec----------ceEEEEEecCCCCcccCCchhhhcee
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIH----------NIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~----------~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
++++.++ |+|+ +|++++ +++. +|+++++|||+++ +|+.....+.
T Consensus 118 ~~~~~~l-----S~G~---~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~---lD~~~~~~~~ 173 (213)
T cd03279 118 ARPVSTL-----SGGE---TFLASLSLALALSEVLQNRGGARLEALFIDEGFGT---LDPEALEAVA 173 (213)
T ss_pred cCCcccc-----CHHH---HHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCccc---CCHHHHHHHH
Confidence 4556666 9999 999988 5542 6789999999999 9987766553
No 380
>KOG0065|consensus
Probab=99.44 E-value=1e-14 Score=127.26 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=83.8
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC----CCeeeeeeeecCCCCHHHHHHHHhc--------------------
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP----ETYALTSVPFNFYTSSEMLQKVLEK-------------------- 59 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~~~-------------------- 59 (163)
-+++|-..+|+|+||||||||++.+.|.... |++.++|.+... ..+++....
T Consensus 813 ~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q----~tF~R~~GYvqQ~DiH~~~~TVrESL~fS 888 (1391)
T KOG0065|consen 813 AFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ----ETFARVSGYVEQQDIHSPELTVRESLRFS 888 (1391)
T ss_pred EecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch----hhhccccceeecccccCcccchHHHHHHH
Confidence 4689999999999999999999999998543 788888877541 111111110
Q ss_pred cccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHH----HHHHHHhcCCceecCCcce--Eeecce-EEEEEecC
Q psy2657 60 PLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHT----VIRQYMDYQHWYDRQKLSL--KDIHNI-MFVSAMNP 132 (163)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~e----llr~~~s~g~~~~~~~~~~--~~~~~~-~~i~~deP 132 (163)
-..+..+.+-.....+.+..+++.++|+... +.-+.. | |..| |+|+.| -++-+| .++++|||
T Consensus 889 A~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~---daiVG~~G~GL-----s~eQ---RKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 889 AALRLPKEVSDEEKYEYVEEVIELLELKEYA---DALVGLPGSGL-----STEQ---RKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred HHHcCCCcCCHHHHHHHHHHHHHHhCchhhh---hhhccCCCCCC-----CHHH---hceeeEEEEEecCCceeEEecCC
Confidence 0001111110000001222344444544322 111222 3 6666 999998 888999 99999999
Q ss_pred CCCcccCCchhhhce-------------eEEEEcCCcccc
Q psy2657 133 TSGSFTIEPRLQRHF-------------YVFALRLGLLRI 159 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~-------------~~~~l~~~~~~~ 159 (163)
|+| ||.+..... -.++++.||.++
T Consensus 958 TSG---LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~i 994 (1391)
T KOG0065|consen 958 TSG---LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDI 994 (1391)
T ss_pred CCC---ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHH
Confidence 999 998765443 456666666554
No 381
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.1e-15 Score=117.58 Aligned_cols=135 Identities=16% Similarity=0.282 Sum_probs=84.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--c-----CCceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--K-----AGRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~ 71 (163)
+||.+..|+.++++||+|+||||+++.+...+++ |.|.++|+++...+.....+.+-.-+... + ...-|+.
T Consensus 282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr 361 (497)
T COG5265 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR 361 (497)
T ss_pred ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC
Confidence 5899999999999999999999999999998765 99999999887665444433321111110 0 0011111
Q ss_pred CC-----------CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 72 PG-----------NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 72 ~~-----------~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
+. ..+...+++.+ |+ .| +-.+.|- =-.+|+|+ |||+++ +++.+|.++++||.|+.
T Consensus 362 ~~at~eev~aaa~~aqi~~fi~~l--P~--gy-~t~Vger-glklSgge---kqrvaiar~ilk~p~il~~deatsa--- 429 (497)
T COG5265 362 PDATAEEVGAAAEAAQIHDFIQSL--PE--GY-DTGVGER-GLKLSGGE---KQRVAIARTILKNPPILILDEATSA--- 429 (497)
T ss_pred ccccHHHHHHHHHHhhhhHHHHhC--ch--hh-hcccchh-eeeccCch---HHHHHHHHHHhcCCCEEEEehhhhH---
Confidence 11 00111111111 11 00 1111110 00259999 999999 89999999999999999
Q ss_pred CCchhhhce
Q psy2657 139 IEPRLQRHF 147 (163)
Q Consensus 139 l~~~~~~~~ 147 (163)
||.+.-+.+
T Consensus 430 ldt~te~~i 438 (497)
T COG5265 430 LDTHTEQAI 438 (497)
T ss_pred hhhhHHHHH
Confidence 887665443
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.44 E-value=1.1e-14 Score=110.35 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=43.1
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecc---eEEEEEecCCCCcccCCchhhhceeE
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN---IMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~---~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
..++.+++... ..++++.+| |+|+ +||+++ +++.+ |+++++|||++| ||+.....+..
T Consensus 151 ~~L~~vgL~~l--~l~~~~~~L-----SgGe---~QRl~LAraL~~~~~~p~lllLDEPtsg---LD~~~~~~l~~ 213 (261)
T cd03271 151 QTLCDVGLGYI--KLGQPATTL-----SGGE---AQRIKLAKELSKRSTGKTLYILDEPTTG---LHFHDVKKLLE 213 (261)
T ss_pred HHHHHcCCchh--hhcCccccC-----CHHH---HHHHHHHHHHhcCCCCCcEEEEECCCCC---CCHHHHHHHHH
Confidence 34556666542 125667788 9999 999998 66665 799999999999 99887766544
No 383
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.39 E-value=1.6e-13 Score=100.35 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=64.1
Q ss_pred CcccccCCc-cEEEEcCCCCcHHHHHHHHH-hcC--CCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCce
Q psy2657 1 MNLFIPKRK-PVMLIGNAGSGKSILINKML-SSL--PPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKT 76 (163)
Q Consensus 1 i~l~i~~ge-~v~l~GpsGsGKTTl~~~i~-~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
+|+.+.+|+ +++|+||||||||||+|.+. ..+ ..|.. + +.. ....+ . .
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~-v---p~~-------------------~~~~~--~---~ 71 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP-I---PAA-------------------EGSSL--P---V 71 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCC-c---ccc-------------------ccccC--c---C
Confidence 478899995 79999999999999999876 211 11100 0 000 00000 0 0
Q ss_pred EEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce-EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 77 MIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL-KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 77 ~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~-~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
+...+..++..+.. ......+ |.|+ +++..+ ..+.+|+++++|||++| +|+.....+
T Consensus 72 ~~~~~~~lg~~~~l---~~~~s~f-----s~g~---~~~~~i~~~~~~p~llllDEp~~g---lD~~~~~~i 129 (200)
T cd03280 72 FENIFADIGDEQSI---EQSLSTF-----SSHM---KNIARILQHADPDSLVLLDELGSG---TDPVEGAAL 129 (200)
T ss_pred ccEEEEecCchhhh---hcCcchH-----HHHH---HHHHHHHHhCCCCcEEEEcCCCCC---CCHHHHHHH
Confidence 11222333332221 3345566 8888 777766 44689999999999999 998766544
No 384
>KOG0062|consensus
Probab=99.36 E-value=2.9e-14 Score=114.35 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=71.6
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc-C---C-CCCeeeeeeee--cCCCCHHHHHHHHhccccccCCceecCCCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS-L---P-PETYALTSVPF--NFYTSSEMLQKVLEKPLEKKAGRNFGPPGN 74 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~-~---~-~g~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (163)
++.+..|+.++|||+||+|||||+|+|..- + + +.++.-+..+. +...........+...-....+. ..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~-----~l 174 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGL-----TL 174 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccc-----hH
Confidence 578899999999999999999999999772 1 1 11111111100 00000111111111100000000 00
Q ss_pred ceEEE-EEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 75 KTMIY-FVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 75 ~~~~~-~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
+.+.. .+.-+++.+.- -.++..+| |||= |-|+++ |+..+|+++++||||+. ||......+
T Consensus 175 ~ei~~~~L~glGFt~em--q~~pt~sl-----SGGW---rMrlaLARAlf~~pDlLLLDEPTNh---LDv~av~WL 237 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEM--QLQPTKSL-----SGGW---RMRLALARALFAKPDLLLLDEPTNH---LDVVAVAWL 237 (582)
T ss_pred HHHHHHHHHhCCCCHHH--Hhcccccc-----Ccch---hhHHHHHHHHhcCCCEEeecCCccc---chhHHHHHH
Confidence 11111 44456654321 15667778 6554 777777 99999999999999999 997765544
No 385
>KOG0054|consensus
Probab=99.36 E-value=2.5e-14 Score=126.62 Aligned_cols=129 Identities=20% Similarity=0.281 Sum_probs=85.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCHHHHHHHHhccccccCCceecCCCCc--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNK-- 75 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 75 (163)
|||.+++|+.+++|||.|||||+|+.+++|.++. |++.++|. .+-++.++-.-. ..+.+..||.+..+
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ng-------TvreNILFG~~~d~~r 612 (1381)
T KOG0054|consen 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNG-------TVRENILFGSPYDEER 612 (1381)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCC-------cHHHhhhcCccccHHH
Confidence 6899999999999999999999999999999865 99988874 222333332110 01111222222211
Q ss_pred -----eEEEEEecCCC-CCCc-CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhc
Q psy2657 76 -----TMIYFVDDMNM-PEVD-AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 76 -----~~~~~l~~~~l-~~~~-~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~ 146 (163)
+++..-+|+.+ |.-| ...-.+-..| |||| |||+++ |.-+|.++.++|+|.+. +|...-+|
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinL-----SGGQ---KqRIsLARAVY~~adIYLLDDplSA---VDahvg~~ 681 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGDLTEIGERGINL-----SGGQ---KQRISLARAVYQDADIYLLDDPLSA---VDAHVGKH 681 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCCcceecCCccCC-----cHhH---HHHHHHHHHHhccCCEEEEcCcchh---hhHhhhHH
Confidence 12333344432 2221 1111234467 9999 999999 88889999999999999 88877766
Q ss_pred e
Q psy2657 147 F 147 (163)
Q Consensus 147 ~ 147 (163)
+
T Consensus 682 i 682 (1381)
T KOG0054|consen 682 I 682 (1381)
T ss_pred H
Confidence 4
No 386
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.35 E-value=3.8e-15 Score=112.45 Aligned_cols=45 Identities=4% Similarity=-0.090 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eee----cceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDI----HNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~----~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
+.++.++ |+|+ +|++++ +++ .+|+++++|||+++ +|+.....+..
T Consensus 161 ~~~~~~l-----S~G~---~qr~~la~al~~~~~~~~~illlDEPt~~---ld~~~~~~~~~ 211 (251)
T cd03273 161 KESLTEL-----SGGQ---RSLVALSLILALLLFKPAPMYILDEVDAA---LDLSHTQNIGR 211 (251)
T ss_pred ccccccc-----CHHH---HHHHHHHHHHHHhhccCCCEEEEeCCCcC---CCHHHHHHHHH
Confidence 3456677 9999 999988 333 47799999999999 99887766644
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.30 E-value=1.2e-13 Score=109.78 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=78.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHH---------HH----HHHhccccccCCcee--
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEM---------LQ----KVLEKPLEKKAGRNF-- 69 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~-- 69 (163)
..+|++++|+|+||.||||.+|++.|.+.|.=...++ .+.+.. +| ...++.....++.-|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~-----pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYED-----PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCC-----CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 4789999999999999999999999998773222222 222222 12 122222211111100
Q ss_pred -------c-------CCC-CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 70 -------G-------PPG-NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 70 -------~-------~~~-~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
+ ... .....++++.++|...- ++.+.+| |+|+ .||+++ ++.++.++.++|||
T Consensus 172 ~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl---~r~v~~L-----SGGE---LQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 172 LIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVL---DRDVSEL-----SGGE---LQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred HHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhh---hhhhhhc-----CchH---HHHHHHHHHHhccCCEEEEcCC
Confidence 0 000 11233455666665544 7778899 9999 999999 88999999999999
Q ss_pred CCCcccCCchhh
Q psy2657 133 TSGSFTIEPRLQ 144 (163)
Q Consensus 133 ~~g~~~l~~~~~ 144 (163)
++. ||-+.+
T Consensus 241 sSy---LDi~qR 249 (591)
T COG1245 241 SSY---LDIRQR 249 (591)
T ss_pred ccc---ccHHHH
Confidence 999 885543
No 388
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.4e-13 Score=110.05 Aligned_cols=135 Identities=13% Similarity=0.198 Sum_probs=92.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecCCCCHHHHHHHHhcc------------------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNFYTSSEMLQKVLEKP------------------ 60 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~------------------ 60 (163)
+||++.+||+++|.|--|||+|-+++++.|..+ .|++.++|+++...++..-...-+...
T Consensus 278 vSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~N 357 (500)
T COG1129 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAEN 357 (500)
T ss_pred ceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHh
Confidence 589999999999999999999999999999644 399999999987776443332211110
Q ss_pred -----ccccCCc-eecCCCC-ceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 61 -----LEKKAGR-NFGPPGN-KTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 61 -----~~~~~~~-~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
+...... +.....+ +.+..+.+.+++..... ++++..| |+|. +|++.+ .+..+|+++++||
T Consensus 358 i~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~--~~~v~~L-----SGGN---QQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 358 ITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP--EQPIGTL-----SGGN---QQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred eehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc--cchhhcC-----Cchh---hhhHHHHHHHhcCCCEEEECC
Confidence 1010000 1111111 11224455556544432 5677778 9999 999998 8889999999999
Q ss_pred CCCCcccCCchhhhcee
Q psy2657 132 PTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~ 148 (163)
||.| +|--.+..+.
T Consensus 428 PTRG---IDVGAK~eIy 441 (500)
T COG1129 428 PTRG---IDVGAKAEIY 441 (500)
T ss_pred CCcC---cccchHHHHH
Confidence 9999 9966665543
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.29 E-value=1.7e-14 Score=105.33 Aligned_cols=45 Identities=7% Similarity=-0.167 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Ee----ecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KD----IHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~----~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
++++.++ |+|+ ++++++ ++ +.+|+++++|||+++ +|+.....+..
T Consensus 104 ~~~~~~l-----S~G~---k~r~~ia~al~~~~~~~p~illlDEP~~g---lD~~~~~~~~~ 154 (198)
T cd03276 104 VRDVKTL-----SGGE---RSFSTVCLLLSLWEVMESPFRCLDEFDVF---MDMVNRKISTD 154 (198)
T ss_pred CCccccc-----ChhH---HHHHHHHHHHHHhcccCCCEEEecCcccc---cCHHHHHHHHH
Confidence 5667778 9999 999888 44 579999999999999 99875554433
No 390
>KOG0927|consensus
Probab=99.27 E-value=1.1e-13 Score=111.59 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=29.9
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.|.+..|+.++|+|||||||||++++|.+...|
T Consensus 95 ~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 95 TLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred eEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 578999999999999999999999999997444
No 391
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.24 E-value=5.8e-12 Score=92.18 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=27.2
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++.+.+|+.++|+|||||||||+++.+.+.
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 577889999999999999999999999854
No 392
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.24 E-value=4.7e-12 Score=92.53 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=27.0
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++++..|++++|+||||||||||+|.+.+.
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 467788999999999999999999999775
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.18 E-value=7.8e-14 Score=105.10 Aligned_cols=44 Identities=5% Similarity=-0.106 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhcCCceecCCcce--Eeec----ceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 95 VQPHTVIRQYMDYQHWYDRQKLSL--KDIH----NIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 95 ~~~~ellr~~~s~g~~~~~~~~~~--~~~~----~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
.++.++ |+|+ ++++++ +++. .|+++++|||+++ ||+.....+..
T Consensus 151 ~~~~~L-----S~G~---k~rl~la~al~~~~~~~p~~lllDEPt~~---LD~~~~~~l~~ 200 (247)
T cd03275 151 RDMDNL-----SGGE---KTMAALALLFAIHSYQPAPFFVLDEVDAA---LDNTNVGKVAS 200 (247)
T ss_pred hhHHHc-----CHHH---HHHHHHHHHHHHhccCCCCEEEEeccccc---CCHHHHHHHHH
Confidence 345666 9999 999988 4444 4899999999999 99876655543
No 394
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.14 E-value=3.1e-11 Score=79.29 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=37.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFY 47 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~ 47 (163)
++|.+++|+.++|+||||||||||++++. .|++.+++.++...
T Consensus 8 vsl~i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~~~g~di~~~ 50 (107)
T cd00820 8 VLVDVYGKVGVLITGDSGIGKTELALELI----KRKHRLVGDDNVEI 50 (107)
T ss_pred eEEEEcCCEEEEEEcCCCCCHHHHHHHhh----CCeEEEeeEeHHHh
Confidence 47889999999999999999999999876 67888998876543
No 395
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=4.4e-11 Score=87.74 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=27.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+++.+.+|++++|+||||+||||+++.+.+.
T Consensus 22 ~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 22 IYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred eEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4677888999999999999999999988765
No 396
>KOG0066|consensus
Probab=99.10 E-value=8.4e-12 Score=99.35 Aligned_cols=127 Identities=15% Similarity=0.231 Sum_probs=68.1
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee-eeecCCCCHHHHHHHHh-ccccccCCceecCCCCceE
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS-VPFNFYTSSEMLQKVLE-KPLEKKAGRNFGPPGNKTM 77 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (163)
+|-|.=-..++|+||||.|||||++.++|.+.| |+..-+. ..+...+....-.-..+ .+.+... ..|..+. +.+
T Consensus 607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLq-r~FNlpy-q~A 684 (807)
T KOG0066|consen 607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQ-RKFNLPY-QEA 684 (807)
T ss_pred cccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHH-HhcCCCh-HHH
Confidence 455666678999999999999999999999887 4432221 11111111110000000 0000000 0000000 001
Q ss_pred EEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 78 IYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 78 ~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
...+-.+++..- ..+..+..| |+|+ +.|+++ .-+..|+++++||||++ ||...
T Consensus 685 RK~LG~fGL~sH--AHTikikdL-----SGGQ---KaRValaeLal~~PDvlILDEPTNN---LDIES 739 (807)
T KOG0066|consen 685 RKQLGTFGLASH--AHTIKIKDL-----SGGQ---KARVALAELALGGPDVLILDEPTNN---LDIES 739 (807)
T ss_pred HHHhhhhhhhhc--cceEeeeec-----CCcc---hHHHHHHHHhcCCCCEEEecCCCCC---cchhh
Confidence 111122333211 114445667 9999 999998 55678999999999998 77543
No 397
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.09 E-value=6.5e-12 Score=109.23 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeecce---EEEEEecCCCCcccCCchhhhceeEE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI---MFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~---~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
++++.+| |+|+ +||+++ +++.+| +++++|||++| ||+.....+..+
T Consensus 825 ~~~~~tL-----SgGE---kQRl~LAraL~~~p~~~~llILDEPtsG---LD~~~~~~L~~~ 875 (943)
T PRK00349 825 GQPATTL-----SGGE---AQRVKLAKELSKRSTGKTLYILDEPTTG---LHFEDIRKLLEV 875 (943)
T ss_pred cCCcccC-----CHHH---HHHHHHHHHHhcCCCCCeEEEEECCCCC---CCHHHHHHHHHH
Confidence 4455566 9999 999988 788888 99999999999 998777665433
No 398
>KOG0060|consensus
Probab=99.07 E-value=8.4e-12 Score=101.63 Aligned_cols=134 Identities=15% Similarity=0.226 Sum_probs=74.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee------ecC----CCCHHHHHHHHhccccccCCce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP------FNF----YTSSEMLQKVLEKPLEKKAGRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~ 68 (163)
+||.|.+|+.++|+||||||||+|+|.+.|+-+. |++..-... +-+ .+.....+.++. +..... ..
T Consensus 454 Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIY-P~~~~~-~~ 531 (659)
T KOG0060|consen 454 LSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIY-PLKAED-MD 531 (659)
T ss_pred eeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeec-cCcccc-cc
Confidence 4789999999999999999999999999998543 544332111 111 111112221111 111000 00
Q ss_pred ecCCCCceEEEEEecCCCCCCc----CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 69 FGPPGNKTMIYFVDDMNMPEVD----AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 69 ~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
.+....+++..+++.+.|.+.. .+ ++.+..=--..+|.|+ +||+++ ....+|++.++||-|+. ++..
T Consensus 532 ~~~~~d~~i~r~Le~v~L~hl~~r~ggl-d~~~~~dW~dvLS~GE---qQRLa~ARLfy~kPk~AiLDE~TSA---v~~d 604 (659)
T KOG0060|consen 532 SKSASDEDILRILENVQLGHLLEREGGL-DQQVDWDWMDVLSPGE---QQRLAFARLFYHKPKFAILDECTSA---VTED 604 (659)
T ss_pred ccCCCHHHHHHHHHHhhhhhHHHHhCCC-CchhhccHHhhcCHHH---HHHHHHHHHHhcCCceEEeechhhh---ccHH
Confidence 0111223344455555443321 11 1111111111239999 999999 56679999999999998 6644
Q ss_pred h
Q psy2657 143 L 143 (163)
Q Consensus 143 ~ 143 (163)
.
T Consensus 605 v 605 (659)
T KOG0060|consen 605 V 605 (659)
T ss_pred H
Confidence 3
No 399
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.05 E-value=1.4e-10 Score=93.68 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=38.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CCC-CeeeeeeeecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PPE-TYALTSVPFNFYT 48 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~g-~i~~~~~~~~~~~ 48 (163)
||+.+.+||+++|+||||||||||++ ++.. +.| +|.++|.++....
T Consensus 25 Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~ 73 (504)
T TIGR03238 25 FNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPN 73 (504)
T ss_pred CceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCC
Confidence 68899999999999999999999999 4443 336 7999999987643
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.03 E-value=6.2e-11 Score=107.88 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eee---cceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDI---HNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~---~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
++++.+| |+|| +||+++ +++ .+|+++++|||++| ||+...+.+..
T Consensus 804 ~q~~~tL-----SGGE---~QRV~LAraL~~~~~~P~LLILDEPTsG---LD~~~~~~Ll~ 853 (1809)
T PRK00635 804 GRPLSSL-----SGGE---IQRLKLAYELLAPSKKPTLYVLDEPTTG---LHTHDIKALIY 853 (1809)
T ss_pred cCccccC-----CHHH---HHHHHHHHHHhhcCCCCCEEEEeCCCCC---CCHHHHHHHHH
Confidence 4445555 9999 999998 554 58999999999999 99877765543
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.02 E-value=5.5e-11 Score=87.81 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHhcCCceecCCcceE------eecceEEEEEecCCCCcccCCchhhhceeEEE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSLK------DIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~~------~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~ 151 (163)
+..+.++ |+|+ +|++.++ ++.+|+++++|||+++ +|+.....+..+.
T Consensus 121 ~~~~~~L-----S~G~---~q~~~i~~~la~~~~~~p~llllDEP~~~---LD~~~~~~i~~~l 173 (213)
T cd03277 121 ELDPHHQ-----SGGE---RSVSTMLYLLSLQELTRCPFRVVDEINQG---MDPTNERKVFDML 173 (213)
T ss_pred ccchhhc-----cccH---HHHHHHHHHHHHHhccCCCEEEEeccccc---CCHHHHHHHHHHH
Confidence 5567888 9999 8876542 2579999999999999 9987766554433
No 402
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=1.1e-11 Score=107.64 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeec---ceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIH---NIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~---~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
++++.+| |+|+ +||+++ +++. +|+++++|||++| ||+.....+..+
T Consensus 823 ~~~~~tL-----SgGe---~QRl~LA~aL~~~~~~p~llILDEPtsg---LD~~~~~~L~~~ 873 (924)
T TIGR00630 823 GQPATTL-----SGGE---AQRIKLAKELSKRSTGRTLYILDEPTTG---LHFDDIKKLLEV 873 (924)
T ss_pred cCccccC-----CHHH---HHHHHHHHHHhhcCCCCCEEEEECCCCC---CCHHHHHHHHHH
Confidence 4445555 9999 999988 5554 5899999999999 998777665433
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.99 E-value=1.3e-11 Score=97.46 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=77.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--------CC--CCeeeeeeeecCCCCHHH----HHHHHhccccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--------PP--ETYALTSVPFNFYTSSEM----LQKVLEKPLEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--------~~--g~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 66 (163)
+||.+++|++++++|+||+||||+++.++|.. +| |++.+-...++..-+... ....+...+...
T Consensus 402 vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~-- 479 (593)
T COG2401 402 LNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSK-- 479 (593)
T ss_pred eeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhc--
Confidence 58999999999999999999999999999962 12 555443322222111100 000000000000
Q ss_pred ceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 67 RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
+.+-...+.++...++.+.--| ..+..|| |.|| +.+..+ .+...|.+++.||=.+. ||+-.
T Consensus 480 ----tGD~~~AveILnraGlsDAvly-Rr~f~EL-----StGQ---KeR~KLAkllaerpn~~~iDEF~Ah---LD~~T 542 (593)
T COG2401 480 ----TGDLNAAVEILNRAGLSDAVLY-RRKFSEL-----STGQ---KERAKLAKLLAERPNVLLIDEFAAH---LDELT 542 (593)
T ss_pred ----cCchhHHHHHHHhhccchhhhh-hccHhhc-----Ccch---HHHHHHHHHHhcCCCcEEhhhhhhh---cCHHH
Confidence 1111123345555666554333 5668889 9999 888777 77788999999998787 77543
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.98 E-value=2.4e-10 Score=84.93 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKML 29 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~ 29 (163)
+++...++++++|+||||+||||+++.+.
T Consensus 23 ~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 23 VTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred EEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 35667789999999999999999999776
No 405
>KOG2355|consensus
Probab=98.97 E-value=3.2e-11 Score=87.45 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=37.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CCCCeeeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PPETYALTSVP 43 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~g~i~~~~~~ 43 (163)
+|+.++.|...+++|.||||||||++++.|.. .+|.|.+.|.+
T Consensus 33 fnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrs 77 (291)
T KOG2355|consen 33 FNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS 77 (291)
T ss_pred EeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcC
Confidence 57889999999999999999999999999973 45788888765
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.96 E-value=2.6e-10 Score=80.71 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=28.8
Q ss_pred hcCCceecCCcce--Eeec----ceEEEEEecCCCCcccCCchhhhcee
Q psy2657 106 DYQHWYDRQKLSL--KDIH----NIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 106 s~g~~~~~~~~~~--~~~~----~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
|+|+ ++++++ ++.. +|+++++|||++| +|+.....+.
T Consensus 79 S~G~---~~~~~la~~L~~~~~~~~~llllDEp~~g---ld~~~~~~l~ 121 (162)
T cd03227 79 SGGE---KELSALALILALASLKPRPLYILDEIDRG---LDPRDGQALA 121 (162)
T ss_pred cccH---HHHHHHHHHHHhcCCCCCCEEEEeCCCCC---CCHHHHHHHH
Confidence 8888 888877 4433 7899999999999 8887655443
No 407
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.94 E-value=5e-10 Score=80.50 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=31.4
Q ss_pred HhcCCceecCCcce--Ee----ecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 105 MDYQHWYDRQKLSL--KD----IHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 105 ~s~g~~~~~~~~~~--~~----~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
+|+|+ ++++++ ++ +.+|+++++|||+++ +|+.....+..
T Consensus 95 LS~Ge---~~r~~Laral~~~~~~~p~llilDEp~~~---LD~~~~~~i~~ 139 (178)
T cd03239 95 LSGGE---KSLSALALIFALQEIKPSPFYVLDEIDAA---LDPTNRRRVSD 139 (178)
T ss_pred CCHHH---HHHHHHHHHHHHhcCCCCCEEEEECCCCC---CCHHHHHHHHH
Confidence 39999 999988 33 268999999999999 99877765543
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=4.5e-11 Score=91.54 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=30.7
Q ss_pred HhcCCceecCCcceEe--ec----ceEEEEEecCCCCcccCCchhhhcee
Q psy2657 105 MDYQHWYDRQKLSLKD--IH----NIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 105 ~s~g~~~~~~~~~~~~--~~----~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
+|+|+ +++++++. +. +|+++++|||+++ +|+.....+.
T Consensus 171 lS~G~---~~r~~la~~~~~~~~~~p~vlllDEp~~~---Ld~~~~~~l~ 214 (276)
T cd03241 171 ASGGE---LSRLMLALKAILARKDAVPTLIFDEIDTG---ISGEVAQAVG 214 (276)
T ss_pred cChhH---HHHHHHHHHHHHhcCCCCCEEEEECCccC---CCHHHHHHHH
Confidence 39999 99988742 22 9999999999999 9988776653
No 409
>KOG0064|consensus
Probab=98.94 E-value=2.2e-10 Score=92.85 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
++|.+++|-.++|+||||||||+|.|++.|+-|
T Consensus 501 Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP 533 (728)
T KOG0064|consen 501 LTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP 533 (728)
T ss_pred eeEEecCCceEEEECCCCccHHHHHHHHhccCc
Confidence 478999999999999999999999998888744
No 410
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.86 E-value=1.5e-08 Score=83.21 Aligned_cols=122 Identities=21% Similarity=0.319 Sum_probs=78.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC------------------CCHHHHHHHHhcc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY------------------TSSEMLQKVLEKP 60 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~------------------~~~~~~~~~~~~~ 60 (163)
+++.+..|++++++||||||||||++.+.+.+++ |+..+....+.+. +........+.+.
T Consensus 203 l~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg 282 (506)
T PRK09862 203 LEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG 282 (506)
T ss_pred hheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC
Confidence 3577889999999999999999999999999876 5555554333211 0000011111111
Q ss_pred ccccCCceecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCce-ecCCcceEeecceEEEEEecCCC
Q psy2657 61 LEKKAGRNFGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWY-DRQKLSLKDIHNIMFVSAMNPTS 134 (163)
Q Consensus 61 ~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~-~~~~~~~~~~~~~~~i~~deP~~ 134 (163)
....+ .....-+.|+|+++... ....+.|++.++.|+++ .+......+-.+..++++++|..
T Consensus 283 ------~~~~pG~l~~A~gGvLfLDEi~e~~------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~p 348 (506)
T PRK09862 283 ------AIPGPGEISLAHNGVLFLDELPEFE------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSP 348 (506)
T ss_pred ------ceehhhHhhhccCCEEecCCchhCC------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcc
Confidence 11111 11234567888886533 34788999999999865 55555556677899999999863
No 411
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.84 E-value=3.6e-09 Score=76.46 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=52.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc-C--CCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS-L--PPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNM 86 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~-~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 86 (163)
+++|+||||+||||++|.+.-. . ..|...... .... . ....++..++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~------------------------~~~~--~---~~d~il~~~~~ 51 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE------------------------SAEL--P---VFDRIFTRIGA 51 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh------------------------heEe--c---ccceEEEEeCC
Confidence 4789999999999999977532 1 112110000 0000 0 01122344444
Q ss_pred CCCcCCCCCCHHHHHHHHHhcCCceecCCcce-EeecceEEEEEecCCCCcccCCchhhhc
Q psy2657 87 PEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL-KDIHNIMFVSAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 87 ~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~-~~~~~~~~i~~deP~~g~~~l~~~~~~~ 146 (163)
.+.. ++....+ +.++ ++...+ ..+.+++++++|||++| +|+.....
T Consensus 52 ~d~~---~~~~s~f-----s~~~---~~l~~~l~~~~~~~llllDEp~~g---~d~~~~~~ 98 (185)
T smart00534 52 SDSL---AQGLSTF-----MVEM---KETANILKNATENSLVLLDELGRG---TSTYDGVA 98 (185)
T ss_pred CCch---hccccHH-----HHHH---HHHHHHHHhCCCCeEEEEecCCCC---CCHHHHHH
Confidence 3332 4456666 6555 442222 33458999999999999 88764433
No 412
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.84 E-value=8.2e-09 Score=70.92 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=70.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhc--cccccCCceecCCCCceEEEEEecCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEK--PLEKKAGRNFGPPGNKTMIYFVDDMNMP 87 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 87 (163)
+|+|+||+|+|||++++.++..+. ..+.-..++..++...+...... .........+.....+..+.++|+++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh---cceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC
Confidence 489999999999999999888762 22333455555544433311110 0000000111112235688899999876
Q ss_pred CCcCCCCCCHHHHHHHHHhcCCceecCCcceEeec-------ceEEEEEecCCC-CcccCCchhhhce
Q psy2657 88 EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIH-------NIMFVSAMNPTS-GSFTIEPRLQRHF 147 (163)
Q Consensus 88 ~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~-------~~~~i~~deP~~-g~~~l~~~~~~~~ 147 (163)
..+ +.+.|..+++.+.+.--..-...... +..++++++|.. +...+++.+++.|
T Consensus 78 ~~~------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 PPE------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -HH------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CHH------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 544 55556666666653211111111111 378999999987 5677999888765
No 413
>KOG0062|consensus
Probab=98.84 E-value=2.4e-10 Score=92.16 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=77.9
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeee-eeeecCCCCHHH--HHHHHhccccccCCceecCCCCce
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALT-SVPFNFYTSSEM--LQKVLEKPLEKKAGRNFGPPGNKT 76 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 76 (163)
++.++--...+++|+||+||||+++++.+.+.| |-+... ...+......+. ..... +.+....+...|. ..+.
T Consensus 384 ~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v-~~vd~~~~~~pG~-~~ee 461 (582)
T KOG0062|consen 384 GLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNV-NAVDFMEKSFPGK-TEEE 461 (582)
T ss_pred CCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHh-HHHHHHHHhCCCC-CHHH
Confidence 344555667899999999999999999998765 433332 223333322221 11111 1111111111111 2333
Q ss_pred EEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 77 MIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 77 ~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
....+..+|++.... .+++..| |||| +.|+++ ....+|.++++||||+. ||....
T Consensus 462 ~r~hl~~~Gl~g~la--~~si~~L-----SGGQ---KsrvafA~~~~~~PhlLVLDEPTNh---LD~dsl 518 (582)
T KOG0062|consen 462 IRRHLGSFGLSGELA--LQSIASL-----SGGQ---KSRVAFAACTWNNPHLLVLDEPTNH---LDRDSL 518 (582)
T ss_pred HHHHHHhcCCCchhh--hcccccc-----CCcc---hhHHHHHHHhcCCCcEEEecCCCcc---ccHHHH
Confidence 445566788865432 3445557 9999 999999 66779999999999999 886544
No 414
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.82 E-value=4.5e-09 Score=93.45 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=120.4
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCC----ceecCCCCceE
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAG----RNFGPPGNKTM 77 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 77 (163)
+..+...+.+.++||+|||||-|+..-+..- --+.+.+.+++..+.....-..++..+...+. .++.++..+..
T Consensus 1488 n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~--~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1488 NEALNTLRSYIYCGPPGSGKEMLMCPSLRSE--LITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred HHHHhccceEEEECCCCCccchhcchhhhhh--hheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 3456677889999999999999876443331 13556777888777666555566555544332 23445667789
Q ss_pred EEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCC--CcccCCchhhhceeEEEEcCC
Q psy2657 78 IYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTS--GSFTIEPRLQRHFYVFALRLG 155 (163)
Q Consensus 78 ~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~--g~~~l~~~~~~~~~~~~l~~~ 155 (163)
+.|+|..|||....|..+.+.-+||+++..-++++.-..+|..+.++-+.-+.+|.. ||.+...|+.|+--.+++.+|
T Consensus 1566 VLFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~yp 1645 (3164)
T COG5245 1566 VLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYP 1645 (3164)
T ss_pred EEEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCc
Confidence 999999999999999898899999999999887776667788888888888999874 588999999999999999998
Q ss_pred cccc
Q psy2657 156 LLRI 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+..-
T Consensus 1646 e~~S 1649 (3164)
T COG5245 1646 ELAS 1649 (3164)
T ss_pred chhh
Confidence 7654
No 415
>KOG0066|consensus
Probab=98.81 E-value=1.1e-09 Score=87.58 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=73.0
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc---CCC-CCeeeeeeeecCCCCHHH---H----------------HHHHh
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS---LPP-ETYALTSVPFNFYTSSEM---L----------------QKVLE 58 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~---~~~-g~i~~~~~~~~~~~~~~~---~----------------~~~~~ 58 (163)
||.|-.|..++|+||||-|||||+++|... +|| =.+++..+.+-....... + +.-++
T Consensus 284 ~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e 363 (807)
T KOG0066|consen 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIE 363 (807)
T ss_pred ceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999764 455 345555555533322210 0 00000
Q ss_pred -ccccc--cCCce------ecC-CCCceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceE
Q psy2657 59 -KPLEK--KAGRN------FGP-PGNKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM 125 (163)
Q Consensus 59 -~~~~~--~~~~~------~~~-~~~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~ 125 (163)
+.... ....+ .+. ..+.++..++.-+++... . +++...+ | |+| |-|+++ ++...|.
T Consensus 364 ~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ---~rPt~kF-----S-GGW--RMRvSLARALflEPT 432 (807)
T KOG0066|consen 364 EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ---ERPTTKF-----S-GGW--RMRVSLARALFLEPT 432 (807)
T ss_pred cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh---cCCcccc-----C-Cce--eeehhHHHHHhcCce
Confidence 00000 00001 111 112233344555555321 2 3444445 5 455 666766 9999999
Q ss_pred EEEEecCCCCcccCCch
Q psy2657 126 FVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 126 ~i~~deP~~g~~~l~~~ 142 (163)
++.+||||+. ||-.
T Consensus 433 LLMLDEPTNH---LDLN 446 (807)
T KOG0066|consen 433 LLMLDEPTNH---LDLN 446 (807)
T ss_pred eeeecCCccc---cccc
Confidence 9999999998 6644
No 416
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.81 E-value=8.3e-09 Score=75.98 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.8
Q ss_pred EeecceEEEEEecCC-----CCcccCCchhhhcee
Q psy2657 119 KDIHNIMFVSAMNPT-----SGSFTIEPRLQRHFY 148 (163)
Q Consensus 119 ~~~~~~~~i~~deP~-----~g~~~l~~~~~~~~~ 148 (163)
+++.+|+++++|||+ ++ |||...+.+.
T Consensus 166 ~l~~~p~~~~ldEp~~~~~~~~---ld~~~~~~~~ 197 (215)
T PTZ00132 166 RLTNDPNLVFVGAPALAPEEIQ---IDPELVAQAE 197 (215)
T ss_pred HHhhcccceecCCcccCCCccc---cCHHHHHHHH
Confidence 788899999999999 99 9998877654
No 417
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.79 E-value=3e-09 Score=76.91 Aligned_cols=33 Identities=39% Similarity=0.753 Sum_probs=30.0
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.+.+++|+.++|+||+||||||+++++++.+++
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 356789999999999999999999999999766
No 418
>KOG0065|consensus
Probab=98.77 E-value=1.5e-09 Score=95.70 Aligned_cols=133 Identities=13% Similarity=0.212 Sum_probs=82.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-----CCCeeeeeeeecCCCCHH----HHHHHHh-cccccc------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-----PETYALTSVPFNFYTSSE----MLQKVLE-KPLEKK------ 64 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-----~g~i~~~~~~~~~~~~~~----~~~~~~~-~~~~~~------ 64 (163)
++.-+++|+.+.++||+|||||||++++.|..+ +|++..+|.+.+...... ..+..+. ..+..+
T Consensus 134 ~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa 213 (1391)
T KOG0065|consen 134 ISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFA 213 (1391)
T ss_pred cceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHH
Confidence 466789999999999999999999999999853 378888887765443310 0000000 001100
Q ss_pred -----CCceec-CCCCce----EEEEEecCCCCCC--cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 65 -----AGRNFG-PPGNKT----MIYFVDDMNMPEV--DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 65 -----~~~~~~-~~~~~~----~~~~l~~~~l~~~--~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
.+..+. ....++ ...+++.+|+..- ...++....-. |+|+ |+|+++ .++..+.+.+.|
T Consensus 214 ~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGv-----SGGe---rKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 214 ARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGV-----SGGE---RKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred HhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccc-----cCcc---cceeeeeeeeecCcceeeee
Confidence 000011 001111 1134445555432 12344444444 9999 999999 889999999999
Q ss_pred cCCCCcccCCchhh
Q psy2657 131 NPTSGSFTIEPRLQ 144 (163)
Q Consensus 131 eP~~g~~~l~~~~~ 144 (163)
|++.| ||....
T Consensus 286 e~t~G---LDSsTa 296 (1391)
T KOG0065|consen 286 EITRG---LDSSTA 296 (1391)
T ss_pred ccccc---ccHHHH
Confidence 99999 986554
No 419
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.74 E-value=4.6e-09 Score=76.49 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=27.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeee
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVP 43 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~ 43 (163)
+++|+||||||||||++.+.+.+..+.+.+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5899999999999999999998855556555444
No 420
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.74 E-value=8.1e-08 Score=70.10 Aligned_cols=121 Identities=22% Similarity=0.315 Sum_probs=65.7
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC-C--------Cee-----------eeeeeecCCCCHHHHHHHHhcccccc
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP-E--------TYA-----------LTSVPFNFYTSSEMLQKVLEKPLEKK 64 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g--------~i~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (163)
...|+.++++||.|+|||++++.+-+.+++ . +++ +...++...+.......++.+.....
T Consensus 19 AaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~ 98 (206)
T PF01078_consen 19 AAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPR 98 (206)
T ss_dssp HHCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEE
T ss_pred HcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCC
Confidence 346789999999999999999999998865 1 111 01111111111111222222211111
Q ss_pred CCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCce-ecCCcceEeecceEEEEEecCCC
Q psy2657 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWY-DRQKLSLKDIHNIMFVSAMNPTS 134 (163)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~-~~~~~~~~~~~~~~~i~~deP~~ 134 (163)
.+.+ ...-+-+.|+|+++..... +.+.||+.++.|... .|......+=.+..++++++|..
T Consensus 99 PGei---slAh~GVLflDE~~ef~~~------vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcp 160 (206)
T PF01078_consen 99 PGEI---SLAHRGVLFLDELNEFDRS------VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCP 160 (206)
T ss_dssp E-CG---GGGTTSEEEECETTTS-HH------HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S--
T ss_pred cCHH---HHhcCCEEEechhhhcCHH------HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccc
Confidence 1111 1122467899999876555 889999999998853 45555567777899999999964
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=6.2e-09 Score=76.87 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=23.5
Q ss_pred cccccCC--ccEEEEcCCCCcHHHHHHHHHh
Q psy2657 2 NLFIPKR--KPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 2 ~l~i~~g--e~v~l~GpsGsGKTTl~~~i~~ 30 (163)
++.+.++ ..++|+||||+||||++|.+..
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 3455554 7899999999999999998763
No 422
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.69 E-value=4.1e-09 Score=84.76 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=86.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee-cCCCCHHHHHHHHhcccccc--CCceec-----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF-NFYTSSEMLQKVLEKPLEKK--AGRNFG----- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~----- 70 (163)
+||.+..||+++|.|=.|-|.+.|+.+|+|..+ .|+|.++|.++ ...+.......-+....+.+ ++.+..
T Consensus 277 vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~e 356 (501)
T COG3845 277 VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAE 356 (501)
T ss_pred eeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHH
Confidence 689999999999999999999999999999863 49999999997 33343332222111100000 000000
Q ss_pred --------------------CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEE
Q psy2657 71 --------------------PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVS 128 (163)
Q Consensus 71 --------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~ 128 (163)
....+.....++.+.+-... ...++..| |+|. .|++-+ -+..+|++++
T Consensus 357 N~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~--~~~~a~~L-----SGGN---qQK~IlaREl~~~p~lLI 426 (501)
T COG3845 357 NLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS--PDAPARSL-----SGGN---QQKLILARELARRPDLLI 426 (501)
T ss_pred HhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC--CCcchhhc-----CCcc---eehhhhhhhhccCCCEEE
Confidence 00011122233444443222 14456677 9999 998877 7889999999
Q ss_pred EecCCCCcccCCchhhhcee
Q psy2657 129 AMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 129 ~deP~~g~~~l~~~~~~~~~ 148 (163)
+..||.| ||.-...+++
T Consensus 427 ~~qPTrG---LDvgA~~~I~ 443 (501)
T COG3845 427 AAQPTRG---LDVGAIEFIH 443 (501)
T ss_pred EcCCCcc---ccHHHHHHHH
Confidence 9999999 9976655543
No 423
>KOG0063|consensus
Probab=98.69 E-value=1.1e-09 Score=86.96 Aligned_cols=119 Identities=12% Similarity=0.186 Sum_probs=67.9
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC---CCeeeeeeeecCC-----CCHHHHHHHHhccccccCCceecCCCCceE
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP---ETYALTSVPFNFY-----TSSEMLQKVLEKPLEKKAGRNFGPPGNKTM 77 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~---g~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (163)
...|++..+|+||.||||+++.++|.+.| +++-.....+..+ ......+. +.... ...+..+. -+
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~l-l~~kI---r~ay~~pq---F~ 437 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQL-LHTKI---RDAYMHPQ---FV 437 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHH-HHHHh---HhhhcCHH---HH
Confidence 34578999999999999999999998766 3333333222221 11111111 11000 00000010 01
Q ss_pred EEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 78 IYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 78 ~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
...++-+.++..- ++.+..+ |+|+ .||+++ .+-...++.+.|||++- +|+..+.
T Consensus 438 ~dvmkpL~ie~i~---dqevq~l-----Sgge---lQRval~KOGGKpAdvYliDEpsAy---lDSeQRi 493 (592)
T KOG0063|consen 438 NDVMKPLQIENII---DQEVQGL-----SGGE---LQRVALALCLGKPADVYLIDEPSAY---LDSEQRI 493 (592)
T ss_pred HhhhhhhhHHHHH---hHHhhcC-----Cchh---hHHHHHHHhcCCCCceEEecCchhh---cChHHHH
Confidence 1122223333222 6667777 9999 999998 44446799999999988 8766553
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.68 E-value=3.3e-09 Score=91.23 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=26.3
Q ss_pred cccccCC-ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 2 NLFIPKR-KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 2 ~l~i~~g-e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++.+..+ +.++|+||||+||||++|.+.+.
T Consensus 315 di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 315 TLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 5667666 89999999999999999988776
No 425
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.67 E-value=9e-08 Score=78.81 Aligned_cols=127 Identities=18% Similarity=0.298 Sum_probs=75.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-HHHHHhcccccc----------CCc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-LQKVLEKPLEKK----------AGR 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~ 67 (163)
+++.+..|++++|+||+||||||+++.+.+.+++ ++..+....+........ ....-..++... .+.
T Consensus 204 l~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg 283 (499)
T TIGR00368 204 LEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG 283 (499)
T ss_pred hhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCc
Confidence 3566788999999999999999999999998766 666665544422110000 000000011100 000
Q ss_pred e-ecC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCce-ecCCcceEeecceEEEEEecCC
Q psy2657 68 N-FGP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWY-DRQKLSLKDIHNIMFVSAMNPT 133 (163)
Q Consensus 68 ~-~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~-~~~~~~~~~~~~~~~i~~deP~ 133 (163)
. ..+ ......+.|+|++.-- .....+.|++.+..|++. .+......+-.+..++++.+|.
T Consensus 284 ~~~~pG~i~lA~~GvLfLDEi~e~------~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 284 PIPLPGEISLAHNGVLFLDELPEF------KRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPC 348 (499)
T ss_pred cccchhhhhccCCCeEecCChhhC------CHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCc
Confidence 0 000 1122356788888532 334789999999988752 3433344555688999999985
No 426
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=1.3e-08 Score=72.87 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-+..|+|+||+|||||+..|.-.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhh
Confidence 47899999999999999988543
No 427
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.63 E-value=2.4e-08 Score=73.31 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=28.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCe
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i 37 (163)
++|++++|+||||||||||++.+.+.++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~ 35 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEI 35 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCC
Confidence 68999999999999999999999998765333
No 428
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.62 E-value=4.9e-08 Score=70.50 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNF 46 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~ 46 (163)
|++++|+||||||||||++.+.+...+ .+.+.+..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-~~~~~~~~~~~ 39 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-QLLVAHRYITR 39 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-eEEEcCEECCC
Confidence 789999999999999999999888654 45555554443
No 429
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.60 E-value=2.9e-08 Score=73.49 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.2
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+..++ ++++|+|||||||||++|.+.+.
T Consensus 26 l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 26 LDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred ecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 34444 89999999999999999988663
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.59 E-value=4.9e-08 Score=57.77 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=25.3
Q ss_pred ccccC-CccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 3 LFIPK-RKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 3 l~i~~-ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
+.+.+ |+.++|+|||||||||++.++.-.+-+
T Consensus 17 ~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 17 IDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34543 569999999999999999988766543
No 431
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.58 E-value=5e-08 Score=69.98 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=30.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
+|++++|+|+|||||||+++.+.+.+.+ +.+++.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~--~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA--KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC--EEECCccc
Confidence 5899999999999999999999998765 45566554
No 432
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.56 E-value=9.9e-08 Score=69.70 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=26.6
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.++|++++|+||||||||||++.+++.++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 47899999999999999999999998864
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.54 E-value=1.4e-07 Score=70.14 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=27.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+++.+.+|++++|+||||+||||+++.+.+.
T Consensus 24 i~~~~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 24 IHLSAEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred EEEEecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999988773
No 434
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.47 E-value=2.9e-07 Score=70.28 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=35.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYT 48 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~ 48 (163)
..++|+||+|||||||++.+++.+.+ |++.++|.++....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d 153 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVD 153 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecch
Confidence 57899999999999999999999866 88999999986543
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.46 E-value=2.3e-07 Score=66.34 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCCC-CCeee
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLPP-ETYAL 39 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~ 39 (163)
|++++|+|||||||||+++.+++.+.. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence 678999999999999999999887643 43433
No 436
>PHA02244 ATPase-like protein
Probab=98.44 E-value=1.7e-06 Score=68.48 Aligned_cols=136 Identities=17% Similarity=0.251 Sum_probs=79.9
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceec-----CCCCceEEE
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG-----PPGNKTMIY 79 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 79 (163)
+..+.+++|.||+|||||++++.+...+.---+.++ .... .. .+.+... .. ..+. ....+-...
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In-----~l~d--~~--~L~G~i~-~~-g~~~dgpLl~A~~~GgvL 184 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN-----AIMD--EF--ELKGFID-AN-GKFHETPFYEAFKKGGLF 184 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe-----cChH--HH--hhccccc-cc-ccccchHHHHHhhcCCEE
Confidence 467899999999999999999998776431112222 1110 00 0000000 00 0111 012233577
Q ss_pred EEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCC--------CcccCCchhhhceeEEE
Q psy2657 80 FVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTS--------GSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 80 ~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~--------g~~~l~~~~~~~~~~~~ 151 (163)
++|+++....+ ....|...++.+. +++.--.+..-.+..+|++.+|.. |...+++.++..|..+.
T Consensus 185 iLDEId~a~p~------vq~~L~~lLd~r~-l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~ 257 (383)
T PHA02244 185 FIDEIDASIPE------ALIIINSAIANKF-FDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIE 257 (383)
T ss_pred EEeCcCcCCHH------HHHHHHHHhccCe-EEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEee
Confidence 89999875554 3445555555543 222111123335788999999842 45789999999999999
Q ss_pred EcCCccc
Q psy2657 152 LRLGLLR 158 (163)
Q Consensus 152 l~~~~~~ 158 (163)
+++|++.
T Consensus 258 ~dyp~~~ 264 (383)
T PHA02244 258 FDYDEKI 264 (383)
T ss_pred CCCCcHH
Confidence 9998743
No 437
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.40 E-value=3.2e-07 Score=67.37 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=29.8
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTS 41 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~ 41 (163)
..++.+++|+|+||||||||++.+.+.+..+.+.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~ 39 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIP 39 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 3578899999999999999999999987544544433
No 438
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.40 E-value=1.3e-06 Score=68.18 Aligned_cols=143 Identities=16% Similarity=0.123 Sum_probs=79.3
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHH-HHHHH---Hhcc---ccccCCceecCCCCceEE
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSE-MLQKV---LEKP---LEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~-~~~~~---~~~~---~~~~~~~~~~~~~~~~~~ 78 (163)
..+..++|.||+||||||+++.+...+.-.-+ -.+++...... ..... +... .....+ .+.........
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~---rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~G-pL~~A~~~g~i 137 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV---RVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDG-ILPWALQHNVA 137 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE---EEEecCCCChhhcCCCceeeccCCcceeEEecC-cchhHHhCCeE
Confidence 45778999999999999999999876532112 22222222111 11000 0000 000011 01011133466
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcC-CceecCCcceEeecc--eEEEEEecCCC---------CcccCCchhhhc
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQ-HWYDRQKLSLKDIHN--IMFVSAMNPTS---------GSFTIEPRLQRH 146 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g-~~~~~~~~~~~~~~~--~~~i~~deP~~---------g~~~l~~~~~~~ 146 (163)
.++|.++....+ ....|..+++.+ +++-... .-.+..+ .-++++.+|-. |..+++..++..
T Consensus 138 lllDEin~a~p~------~~~~L~~lLE~~~~l~i~~~-~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDR 210 (327)
T TIGR01650 138 LCFDEYDAGRPD------VMFVIQRVLEAGGKLTLLDQ-NRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDR 210 (327)
T ss_pred EEechhhccCHH------HHHHHHHHhccCCeEEECCC-ceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhh
Confidence 889999876555 445566677753 3221111 1122233 45688899843 356889999988
Q ss_pred eeE-EEEcCCcccc
Q psy2657 147 FYV-FALRLGLLRI 159 (163)
Q Consensus 147 ~~~-~~l~~~~~~~ 159 (163)
|.+ +.+++|+.+.
T Consensus 211 F~i~~~~~Yp~~e~ 224 (327)
T TIGR01650 211 WSIVTTLNYLEHDN 224 (327)
T ss_pred eeeEeeCCCCCHHH
Confidence 875 5799988765
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.37 E-value=2.4e-07 Score=72.12 Aligned_cols=32 Identities=31% Similarity=0.704 Sum_probs=29.3
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
+.+..|+.++|+||+||||||+++++++.+++
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 45778999999999999999999999999876
No 440
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.37 E-value=1.9e-06 Score=65.52 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=79.5
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHH--------Hhc---cccc---cCCcee-
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKV--------LEK---PLEK---KAGRNF- 69 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~--------~~~---~~~~---~~~~~~- 69 (163)
+..|.+++|.||+|+|||++++.+...+...-+.+++.+ .......+... ... .... ..+..|
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~--~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA--ELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc--cCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 456889999999999999999998765421112222211 11111111100 000 0000 000011
Q ss_pred -cC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecC--C-cc-eEeecceEEEEEecCCC--CcccC
Q psy2657 70 -GP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQ--K-LS-LKDIHNIMFVSAMNPTS--GSFTI 139 (163)
Q Consensus 70 -~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~--~-~~-~~~~~~~~~i~~deP~~--g~~~l 139 (163)
++ ...+....++|.++-...+ ....|...++.+++.-.. + -. +..-.+..++++.+|.. |...+
T Consensus 96 ~g~l~~A~~~g~~lllDEi~r~~~~------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 96 DNRLTLAVREGFTLVYDEFTRSKPE------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred CchHHHHHHcCCEEEEcchhhCCHH------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 10 0112246788888765444 445566666666532111 0 01 12334667899999863 44467
Q ss_pred CchhhhceeEEEEcCCcccc
Q psy2657 140 EPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~ 159 (163)
++.+.+.|..+.+++|+.+.
T Consensus 170 ~~aL~~R~~~i~i~~P~~~~ 189 (262)
T TIGR02640 170 QDALLDRLITIFMDYPDIDT 189 (262)
T ss_pred cHHHHhhcEEEECCCCCHHH
Confidence 88899889999999998754
No 441
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.36 E-value=1.6e-06 Score=58.35 Aligned_cols=123 Identities=15% Similarity=0.217 Sum_probs=59.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCCCc
Q psy2657 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVD 90 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 90 (163)
++|.||+||||||+++.+...+...-+.++...+.........+ .+...+... . ...+..+.++|+++.-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~-~i~~~~~~~----~--~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQ-KIRDFFKKA----K--KSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHH-HHHHHHHHH----H--HTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccc-ccccccccc----c--ccccceeeeeccchhcccc
Confidence 58999999999999999998874222333333332111111111 111111110 0 0013588899999653332
Q ss_pred C--CCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhh-hceeE
Q psy2657 91 A--YGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQ-RHFYV 149 (163)
Q Consensus 91 ~--~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~-~~~~~ 149 (163)
. ........+++++++.-.....+ -...-++++.+-... +++.+. ..|..
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~------~~~~~vI~ttn~~~~---i~~~l~~~rf~~ 126 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSK------NSRVIVIATTNSPDK---IDPALLRSRFDR 126 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTT------SSSEEEEEEESSGGG---SCHHHHSTTSEE
T ss_pred cccccccccccccceeeecccccccc------cccceeEEeeCChhh---CCHhHHhCCCcE
Confidence 1 11222334444443322210022 122445555444444 888887 66654
No 442
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.34 E-value=4.1e-07 Score=65.08 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
|++++|+|||||||||+++.+.+..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999988653
No 443
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.31 E-value=4.7e-07 Score=67.52 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=26.7
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC--CC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP--ET 36 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~ 36 (163)
.+..+++|+||||||||||++.+.+.+++ |.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 34679999999999999999999998765 55
No 444
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.30 E-value=5.6e-07 Score=66.80 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+++|.||||||||||++.+.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998874
No 445
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.30 E-value=8.4e-06 Score=55.17 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.9
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+.++.|+||+|+||||+++.+...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998876
No 446
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.28 E-value=1e-06 Score=71.26 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.3
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCe
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i 37 (163)
+.+.+|+.++|+|+||||||||+++|++..++..+
T Consensus 150 l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 150 LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 67899999999999999999999999998766543
No 447
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.28 E-value=6e-07 Score=69.14 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC----CCCeeeeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP----PETYALTSVP 43 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~----~g~i~~~~~~ 43 (163)
.-.+++|.|||||||||+++.+.+.+. .|++.+.+.+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 346899999999999999998877764 3566554433
No 448
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.26 E-value=1.4e-06 Score=66.14 Aligned_cols=36 Identities=28% Similarity=0.571 Sum_probs=28.8
Q ss_pred ccCCc-cEEEEcCCCCcHHHHHHHHHhcCCCCCeeee
Q psy2657 5 IPKRK-PVMLIGNAGSGKSILINKMLSSLPPETYALT 40 (163)
Q Consensus 5 i~~ge-~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~ 40 (163)
++++. .++|+||+|+||||+++.+...++++.+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~ 75 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAA 75 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEe
Confidence 44544 7999999999999999999998876655443
No 449
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.26 E-value=5.5e-07 Score=77.88 Aligned_cols=101 Identities=8% Similarity=0.062 Sum_probs=58.6
Q ss_pred cccc-CCccEEEEcCCCCcHHHHHHHHHhc--C-CCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 3 LFIP-KRKPVMLIGNAGSGKSILINKMLSS--L-PPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 3 l~i~-~ge~v~l~GpsGsGKTTl~~~i~~~--~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+.+. .+.+++|+|||++||||++|.+... + ..|-. +... .. ..-..+.
T Consensus 321 i~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~------vpa~-----------------~~-----~~i~~~~ 372 (782)
T PRK00409 321 ISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLP------IPAN-----------------EP-----SEIPVFK 372 (782)
T ss_pred eEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCC------cccC-----------------CC-----ccccccc
Confidence 4443 4567999999999999999966332 1 00100 0000 00 0000011
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce-EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL-KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~-~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
.++.+++-.+.- .+.++.+ |.++ ++...+ ..+.+++++++|||++| +||....
T Consensus 373 ~i~~~ig~~~si---~~~lStf-----S~~m---~~~~~Il~~~~~~sLvLlDE~~~G---tDp~eg~ 426 (782)
T PRK00409 373 EIFADIGDEQSI---EQSLSTF-----SGHM---TNIVRILEKADKNSLVLFDELGAG---TDPDEGA 426 (782)
T ss_pred eEEEecCCccch---hhchhHH-----HHHH---HHHHHHHHhCCcCcEEEecCCCCC---CCHHHHH
Confidence 223344433222 4456677 8888 777776 33478999999999999 8876443
No 450
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.24 E-value=2.7e-06 Score=68.96 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=29.1
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g 35 (163)
.+.+|+.++|+||||||||||++++.+..++.
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd 192 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD 192 (450)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 68899999999999999999999999887663
No 451
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.24 E-value=2.3e-06 Score=61.27 Aligned_cols=50 Identities=28% Similarity=0.465 Sum_probs=34.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC-----------CCCCeeeeeeeecCCCCHHHHHHHH
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL-----------PPETYALTSVPFNFYTSSEMLQKVL 57 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~-----------~~g~i~~~~~~~~~~~~~~~~~~~~ 57 (163)
.|..++|.||||+||||+++.++... +|-...++|+++.+.+. ..++..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~-~EF~~~i 63 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTE-EEFEELI 63 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCH-HHHHHHH
Confidence 78999999999999999999987753 11122346777666543 3344433
No 452
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.23 E-value=1.7e-06 Score=64.15 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+++..++|++++|+||||+||||+++.+...
T Consensus 23 i~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 23 VDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred eEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 4567788999999999999999999977654
No 453
>PRK08149 ATP synthase SpaL; Validated
Probab=98.23 E-value=3e-06 Score=68.44 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=30.8
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCe
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i 37 (163)
+.+.+|+.++|+|+||+|||||++.+.+...+..+
T Consensus 146 l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~ 180 (428)
T PRK08149 146 LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVF 180 (428)
T ss_pred eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeE
Confidence 67889999999999999999999999998766443
No 454
>PLN02796 D-glycerate 3-kinase
Probab=98.22 E-value=9.4e-07 Score=69.32 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=30.4
Q ss_pred cCCcc-----EEEEcCCCCcHHHHHHHHHhcCCC-----CCeeeeeeee
Q psy2657 6 PKRKP-----VMLIGNAGSGKSILINKMLSSLPP-----ETYALTSVPF 44 (163)
Q Consensus 6 ~~ge~-----v~l~GpsGsGKTTl~~~i~~~~~~-----g~i~~~~~~~ 44 (163)
++|+. ++|+|++|||||||++.+.+.+.+ |.+.+++...
T Consensus 93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 93 KDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred ccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 45676 999999999999999999998754 4455565543
No 455
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.21 E-value=9.2e-07 Score=64.49 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=32.1
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC---CCeeeeeeee
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP---ETYALTSVPF 44 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~---g~i~~~~~~~ 44 (163)
.+|.+++|+|+|||||||+++.+.+.+.+ |.+.+++.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 67899999999999999999999887532 4677777554
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.20 E-value=1.5e-06 Score=58.34 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=25.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.+..++|+||+||||||+++.++..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 3678999999999999999999998755
No 457
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.20 E-value=1.3e-06 Score=61.56 Aligned_cols=26 Identities=46% Similarity=0.701 Sum_probs=23.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++.++++|+||+|||||+|.+++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45899999999999999999999874
No 458
>KOG0063|consensus
Probab=98.19 E-value=9.7e-08 Score=76.15 Aligned_cols=123 Identities=13% Similarity=0.127 Sum_probs=68.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeee----eeeecCCCCHHHHHHHH----hccccccCC-----------
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALT----SVPFNFYTSSEMLQKVL----EKPLEKKAG----------- 66 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~----------- 66 (163)
.+|++.+++|-||.||||-++.++|.++|.-..++ +.++-.......+++.+ +..+....+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 68999999999999999999999998776221111 11111111222222221 111110000
Q ss_pred -----ceecCC-CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 67 -----RNFGPP-GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 67 -----~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+.+.. .++....+++.+.+.... ++.+.++ |+|+ .||.++ +.++..++.++|||++.
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~---~re~~~l-----sgge---lqrfaia~~~vq~advyMFDEpSsY--- 243 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLL---DREVEQL-----SGGE---LQRFAIAMVCVQKADVYMFDEPSSY--- 243 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHH---Hhhhhhc-----ccch---hhhhhhhhhhhhhcceeEecCCccc---
Confidence 000000 011111223333332222 4445566 9999 888887 77889999999999988
Q ss_pred CCch
Q psy2657 139 IEPR 142 (163)
Q Consensus 139 l~~~ 142 (163)
||-.
T Consensus 244 LDVK 247 (592)
T KOG0063|consen 244 LDVK 247 (592)
T ss_pred chHH
Confidence 6643
No 459
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.18 E-value=3.7e-06 Score=67.94 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=31.9
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYAL 39 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~ 39 (163)
+.+.+|+.++|+|+||+|||||++.+++...+..+.+
T Consensus 157 l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~dv~Vi 193 (444)
T PRK08972 157 LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVV 193 (444)
T ss_pred EEEcCCCEEEEECCCCCChhHHHHHhccCCCCCEEEE
Confidence 6789999999999999999999999998876654444
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.17 E-value=1.4e-06 Score=68.13 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=32.2
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeee
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPF 44 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~ 44 (163)
.+|++++++||||+||||++..+.+.+.+ ++|.+.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 46899999999999999999999887543 5777766554
No 461
>PRK13695 putative NTPase; Provisional
Probab=98.17 E-value=1e-06 Score=62.86 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.++|+|++|||||||++.+.+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999887654
No 462
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.15 E-value=4.7e-06 Score=65.15 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=32.0
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYAL 39 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~ 39 (163)
+.+.+|+.++|+|+||+|||||++.+.+...+..+.+
T Consensus 64 ~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi 100 (326)
T cd01136 64 LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVI 100 (326)
T ss_pred eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEE
Confidence 5688999999999999999999999999987754333
No 463
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.14 E-value=1.7e-06 Score=57.74 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|+|++||||||+++.+...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 464
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.14 E-value=2.3e-06 Score=74.27 Aligned_cols=144 Identities=16% Similarity=0.235 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCc---eecCCCCceEEEEEec
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGR---NFGPPGNKTMIYFVDD 83 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 83 (163)
+|.+++|+||+|+||||+++++.+.+...-+.+. +.....................+. .+........+.++|.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~---~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDE 422 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFS---LGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDE 422 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEe---CCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEec
Confidence 5678999999999999999999988643212111 111111110000000000000000 0001111223678888
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHhcCC---ceecCCcce-EeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCcccc
Q psy2657 84 MNMPEVDAYGTVQPHTVIRQYMDYQH---WYDRQKLSL-KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 84 ~~l~~~~~~~~~~~~ellr~~~s~g~---~~~~~~~~~-~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
++-..... .-.+...|.+.++..+ +.+.. +.. .-..++-++++.++... +++.+++.|.++.++.++.+.
T Consensus 423 idk~~~~~--~~~~~~aLl~~ld~~~~~~f~d~~-~~~~~d~s~v~~I~TtN~~~~---i~~~L~~R~~vi~~~~~~~~e 496 (775)
T TIGR00763 423 IDKIGSSF--RGDPASALLEVLDPEQNNAFSDHY-LDVPFDLSKVIFIATANSIDT---IPRPLLDRMEVIELSGYTEEE 496 (775)
T ss_pred hhhcCCcc--CCCHHHHHHHhcCHHhcCcccccc-CCceeccCCEEEEEecCCchh---CCHHHhCCeeEEecCCCCHHH
Confidence 86543321 1124555666665422 22211 111 22234556666666556 999999999988888777543
No 465
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.14 E-value=5.4e-06 Score=59.98 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.9
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++.+++|+||||||||||++.++...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 367899999999999999999887764
No 466
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.13 E-value=2.5e-06 Score=58.36 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=26.4
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+.+|.+++|.|+.||||||++|.++..+.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999988764
No 467
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=2e-06 Score=69.35 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=24.3
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.+|++++|+||||+||||+++.+.+.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999988774
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.12 E-value=2.1e-06 Score=70.27 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=26.6
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+.+.+|++++|+||||+||||++..+.+.+
T Consensus 251 ~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 251 ALLDRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred ccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 346789999999999999999999998865
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.11 E-value=2.7e-06 Score=58.56 Aligned_cols=25 Identities=36% Similarity=0.731 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
+++|+||+|||||||++.+++.+++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4789999999999999999988653
No 470
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.11 E-value=2.5e-06 Score=60.94 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=29.8
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC---CCCeeeee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP---PETYALTS 41 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~g~i~~~~ 41 (163)
..+|.+++++|++||||||+++.+.+.+. .+.+.+++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 57899999999999999999999887653 24455554
No 471
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=5.8e-06 Score=66.89 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=30.7
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPET 36 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~ 36 (163)
+.+.+|+.++|+|++|+|||||++.+++...++.
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~ 184 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI 184 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe
Confidence 6789999999999999999999999999877643
No 472
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=4.5e-06 Score=67.70 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=32.8
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALT 40 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~ 40 (163)
+.+.+|+.++|+|+||+|||||++++++..++..+.+.
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g 207 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVG 207 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEE
Confidence 67899999999999999999999999999877544343
No 473
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.10 E-value=3.2e-06 Score=64.73 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
+++|+|+|||||||+++.+.+.+++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5899999999999999999998765
No 474
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.08 E-value=5.2e-06 Score=60.69 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=27.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNF 46 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~ 46 (163)
.++|+||+|||||||++.+++.+.+ ..+.+...++..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 5899999999999999999998655 345444444433
No 475
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=3.4e-06 Score=68.48 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=32.9
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS 41 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~ 41 (163)
+.+.+|+.++|+|+||+|||||++.+++..++ |.+.+.|
T Consensus 153 ~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~G 193 (438)
T PRK07721 153 LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIG 193 (438)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEe
Confidence 67899999999999999999999999998766 4444443
No 476
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.07 E-value=8.1e-06 Score=65.89 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=31.0
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g 35 (163)
++.+.+|+.++|+|+||+|||||++++++..++.
T Consensus 134 ~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~ 167 (418)
T TIGR03498 134 FLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDAD 167 (418)
T ss_pred eccccCCcEEEEECCCCCChHHHHHHHhCCCCCC
Confidence 5789999999999999999999999999987663
No 477
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=3.7e-06 Score=66.85 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=26.6
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++.+.+|++++|+||+|+||||++..+.+.
T Consensus 131 ~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 131 DALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999999988775
No 478
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.06 E-value=9.4e-06 Score=65.98 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=32.4
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALT 40 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~ 40 (163)
+.+.+|+.++|+|+||+|||||++.+++..++..+.+.
T Consensus 158 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~ 195 (440)
T TIGR01026 158 LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIA 195 (440)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEE
Confidence 67899999999999999999999999998876444333
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=3.6e-06 Score=66.79 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=32.0
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS 41 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~ 41 (163)
.+.+|+.++|+|+||+|||||++.++|...+ |++..++
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~ 230 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDD 230 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECC
Confidence 3568999999999999999999999997554 7776654
No 480
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.04 E-value=1.3e-05 Score=64.60 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=30.5
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPET 36 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~ 36 (163)
+.+.+|+.++|+|+||+|||||++.+++...+..
T Consensus 132 ~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~ 165 (411)
T TIGR03496 132 LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADV 165 (411)
T ss_pred EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 6789999999999999999999999999876643
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.04 E-value=3.6e-06 Score=61.44 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.++|+||+||||||+++.+++.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999888764
No 482
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.04 E-value=1.1e-05 Score=57.55 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=64.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCC-CCCeeeeeeeecCCCCHH----HHHHHHhccccccCCceecCCCCceEEEEEec
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLP-PETYALTSVPFNFYTSSE----MLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDD 83 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~-~g~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (163)
-.+.++||+|+|||.|++.+...+. .++-.+.-.+++...... .+...+...... + + ..+..+.++|+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~----v-~--~~~~gVVllDE 76 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGY----V-G--AEEGGVVLLDE 76 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCH----H-H--HHHHTEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccce----e-e--ccchhhhhhHH
Confidence 3689999999999999999988876 444455555666555421 111111111000 0 0 01112777888
Q ss_pred CCCCCCc-CCC----CCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEec
Q psy2657 84 MNMPEVD-AYG----TVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMN 131 (163)
Q Consensus 84 ~~l~~~~-~~~----~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~de 131 (163)
+.-.... ... ...+.+.|-+.+++|.+.+.+. .-.-..++-+|++-+
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g-~~vd~~n~ifI~Tsn 128 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYG-RTVDTSNIIFIMTSN 128 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTC-CEEEGTTEEEEEEES
T ss_pred HhhccccccccchhhHHHHHHHHHHHhcccceecccc-eEEEeCCceEEEecc
Confidence 7543330 000 0136788888899998776554 224444555555543
No 483
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.03 E-value=2.4e-06 Score=61.56 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=21.5
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.+.+| +.+|+||||+||||++.++.-.
T Consensus 15 i~f~~g-~~vi~G~Ng~GKStil~ai~~~ 42 (202)
T PF13476_consen 15 IDFSPG-LNVIYGPNGSGKSTILEAIRYA 42 (202)
T ss_dssp EE--SE-EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEcCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 445555 9999999999999999977443
No 484
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.03 E-value=5.1e-06 Score=65.55 Aligned_cols=32 Identities=31% Similarity=0.685 Sum_probs=28.3
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g 35 (163)
.+..+..++|+||.||||||+++++++.++++
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~ 189 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ 189 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCC
Confidence 35678899999999999999999999987763
No 485
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.03 E-value=5.1e-06 Score=62.75 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=28.3
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.+.+|+.++|+||+|+|||||++.+.+.+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 5789999999999999999999999988754
No 486
>PRK07261 topology modulation protein; Provisional
Probab=98.02 E-value=6.2e-06 Score=58.85 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.++|+|++|||||||++.+...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999998877643
No 487
>PRK09183 transposase/IS protein; Provisional
Probab=98.02 E-value=4.8e-06 Score=63.32 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.8
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+++|+.++|+||+|+|||+|+.++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999988654
No 488
>PRK00098 GTPase RsgA; Reviewed
Probab=98.00 E-value=5.9e-06 Score=64.06 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=26.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCC--CCe
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPP--ETY 37 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i 37 (163)
.|+.++++|+||+|||||+|.+++.... |++
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v 195 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEI 195 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcce
Confidence 5889999999999999999999997543 444
No 489
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.00 E-value=1.1e-05 Score=64.88 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=25.8
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
+..+.-++|.||+|||||++++++.+....
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 456778999999999999999999887643
No 490
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.00 E-value=7.4e-06 Score=57.81 Aligned_cols=23 Identities=17% Similarity=0.543 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++|+|++|||||||++.+.+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 35999999999999999999986
No 491
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.99 E-value=4.6e-06 Score=66.19 Aligned_cols=28 Identities=36% Similarity=0.652 Sum_probs=25.2
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..++..++|+||+||||||+++++++.+
T Consensus 131 ~~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 131 APQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998875
No 492
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.98 E-value=6.2e-06 Score=58.05 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
++++||+||||||+++.+.+.+. ...+++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~--~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG--AKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC--CeEEeCccc
Confidence 46899999999999999988763 455555443
No 493
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.98 E-value=5.6e-06 Score=60.79 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
..+.+++|+||||||||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 57889999999999999999988654
No 494
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.97 E-value=2.7e-05 Score=67.57 Aligned_cols=145 Identities=16% Similarity=0.220 Sum_probs=73.2
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCce---ecCCCCceEEEEEe
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRN---FGPPGNKTMIYFVD 82 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~ 82 (163)
.+|++++|+||+|+||||+++.+.+.+...-+. ..+........+...-........+.. +........+.++|
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villD 423 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLD 423 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEE
Confidence 368999999999999999999999876431111 112221111111100000000000000 01111123457788
Q ss_pred cCCCCCCcCCCCCCHHHHHHHHHhcCCc--eecCCcce-EeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCcccc
Q psy2657 83 DMNMPEVDAYGTVQPHTVIRQYMDYQHW--YDRQKLSL-KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 83 ~~~l~~~~~~~~~~~~ellr~~~s~g~~--~~~~~~~~-~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
.++-...+. ...+...|-+.++.++- |.-+.+.+ .-+.++-+|+ ..|+. .+++.++..+.++.+...+.+.
T Consensus 424 Eidk~~~~~--~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~-TaN~~---~i~~aLl~R~~ii~~~~~t~ee 497 (784)
T PRK10787 424 EIDKMSSDM--RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA-TSNSM---NIPAPLLDRMEVIRLSGYTEDE 497 (784)
T ss_pred Chhhccccc--CCCHHHHHHHHhccccEEEEecccccccccCCceEEEE-cCCCC---CCCHHHhcceeeeecCCCCHHH
Confidence 885433321 11255666666676551 11111222 2234454443 22333 4999999999988888777654
No 495
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.97 E-value=8.9e-05 Score=55.65 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+|+|++||||||++..++..+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999888754
No 496
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.97 E-value=5.5e-06 Score=56.78 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
++.++||+||||||+++.+...+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 478999999999999999887654
No 497
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=7.3e-06 Score=58.28 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.+.|+||+||||||+++.+...+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999998887653
No 498
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.96 E-value=2.8e-05 Score=63.09 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=32.6
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALT 40 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~ 40 (163)
+.+.+|+.++|+|+||+|||||++.+.+..++..+.+.
T Consensus 153 ~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~~v~~ 190 (442)
T PRK08927 153 LTCCRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIG 190 (442)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCEEEEE
Confidence 56889999999999999999999999998877554443
No 499
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.96 E-value=8.4e-06 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++++|++||||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999888875
No 500
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.95 E-value=9.6e-06 Score=57.94 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.+++|+|++|||||||++.+...+.+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhh
Confidence 47899999999999999999887754
Done!