Query psy2657
Match_columns 163
No_of_seqs 128 out of 2067
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 21:54:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g1u_C Hemin import ATP-bindin 99.9 2.3E-27 8E-32 179.2 -5.3 135 1-150 30-189 (266)
2 3tui_C Methionine import ATP-b 99.9 6.9E-28 2.4E-32 188.6 -9.0 139 1-153 47-208 (366)
3 3tif_A Uncharacterized ABC tra 99.9 5.4E-27 1.9E-31 174.3 -5.8 139 1-152 24-189 (235)
4 3gfo_A Cobalt import ATP-bindi 99.9 2.2E-27 7.7E-32 180.0 -8.2 137 1-151 27-186 (275)
5 3fvq_A Fe(3+) IONS import ATP- 99.9 5.3E-28 1.8E-32 189.0 -12.1 133 1-149 23-179 (359)
6 3rlf_A Maltose/maltodextrin im 99.9 6.5E-28 2.2E-32 189.7 -12.5 135 1-151 22-176 (381)
7 2pcj_A ABC transporter, lipopr 99.9 2.7E-26 9.2E-31 169.5 -3.3 137 1-151 23-183 (224)
8 1g6h_A High-affinity branched- 99.9 1E-26 3.5E-31 174.9 -6.2 136 1-150 26-195 (257)
9 2yyz_A Sugar ABC transporter, 99.9 3.7E-26 1.3E-30 178.9 -5.1 135 1-151 22-176 (359)
10 2olj_A Amino acid ABC transpor 99.9 2.7E-26 9.1E-31 173.1 -5.9 139 1-153 43-204 (263)
11 1v43_A Sugar-binding transport 99.9 6.6E-26 2.3E-30 178.2 -5.4 136 1-150 30-183 (372)
12 1z47_A CYSA, putative ABC-tran 99.9 3E-26 1E-30 179.0 -7.4 135 1-151 34-188 (355)
13 3d31_A Sulfate/molybdate ABC t 99.9 1.3E-25 4.4E-30 175.2 -4.2 134 1-151 19-170 (348)
14 1oxx_K GLCV, glucose, ABC tran 99.9 4.4E-26 1.5E-30 178.2 -7.7 135 1-151 24-183 (353)
15 2it1_A 362AA long hypothetical 99.9 4.8E-26 1.6E-30 178.4 -7.7 135 1-151 22-176 (362)
16 1b0u_A Histidine permease; ABC 99.9 3.6E-26 1.2E-30 172.4 -8.1 138 1-152 25-197 (262)
17 2yz2_A Putative ABC transporte 99.9 8.7E-26 3E-30 170.7 -6.5 132 1-150 26-180 (266)
18 1sgw_A Putative ABC transporte 99.9 1.4E-25 4.7E-30 164.5 -5.2 131 1-150 28-175 (214)
19 1ji0_A ABC transporter; ATP bi 99.9 3.9E-26 1.3E-30 170.2 -8.4 138 1-152 25-183 (240)
20 1g29_1 MALK, maltose transport 99.9 5.5E-26 1.9E-30 178.8 -8.6 135 1-151 22-182 (372)
21 1vpl_A ABC transporter, ATP-bi 99.9 3.9E-26 1.3E-30 171.7 -9.1 135 1-151 34-189 (256)
22 3vkg_A Dynein heavy chain, cyt 99.9 1.4E-22 4.8E-27 188.4 12.3 158 4-163 1300-1465(3245)
23 2ihy_A ABC transporter, ATP-bi 99.9 4.5E-26 1.5E-30 173.2 -10.1 137 1-151 40-204 (279)
24 2ixe_A Antigen peptide transpo 99.9 7E-26 2.4E-30 171.6 -9.7 139 1-154 38-202 (271)
25 2qi9_C Vitamin B12 import ATP- 99.9 1.3E-25 4.5E-30 168.1 -8.5 137 1-152 19-177 (249)
26 2onk_A Molybdate/tungstate ABC 99.9 6.4E-26 2.2E-30 169.0 -10.5 132 1-152 18-170 (240)
27 2ff7_A Alpha-hemolysin translo 99.9 3E-25 1E-29 166.1 -8.2 139 1-151 28-188 (247)
28 1mv5_A LMRA, multidrug resista 99.9 9.2E-24 3.1E-28 157.6 -0.4 138 1-150 21-181 (243)
29 2d2e_A SUFC protein; ABC-ATPas 99.9 2.5E-25 8.5E-30 166.8 -9.2 137 1-151 22-186 (250)
30 2zu0_C Probable ATP-dependent 99.9 1.4E-25 4.9E-30 169.5 -11.1 140 1-154 39-210 (267)
31 2nq2_C Hypothetical ABC transp 99.9 2E-24 6.8E-29 162.1 -6.7 137 1-152 24-172 (253)
32 2pjz_A Hypothetical protein ST 99.9 3.2E-25 1.1E-29 167.2 -11.4 131 1-148 24-168 (263)
33 3nh6_A ATP-binding cassette SU 99.8 2.1E-23 7.3E-28 160.2 -3.0 134 1-148 73-230 (306)
34 3gd7_A Fusion complex of cysti 99.8 7.3E-25 2.5E-29 173.2 -11.7 136 1-151 40-198 (390)
35 4akg_A Glutathione S-transfera 99.8 1E-20 3.6E-25 175.1 13.5 158 4-163 1263-1427(2695)
36 2ghi_A Transport protein; mult 99.8 3.1E-23 1.1E-27 156.2 -3.1 138 1-150 39-197 (260)
37 2pze_A Cystic fibrosis transme 99.8 4.3E-24 1.5E-28 158.1 -10.3 130 1-150 27-172 (229)
38 3ozx_A RNAse L inhibitor; ATP 99.8 4.2E-24 1.4E-28 175.2 -12.9 128 2-148 288-425 (538)
39 3b5x_A Lipid A export ATP-bind 99.8 1.3E-21 4.3E-26 162.1 0.7 139 1-151 362-523 (582)
40 2cbz_A Multidrug resistance-as 99.8 4E-24 1.4E-28 159.0 -12.9 134 1-151 24-170 (237)
41 2bbs_A Cystic fibrosis transme 99.8 5E-23 1.7E-27 157.2 -11.6 128 1-150 57-201 (290)
42 3b60_A Lipid A export ATP-bind 99.8 4.6E-22 1.6E-26 164.7 -7.1 136 1-148 362-520 (582)
43 3qf4_B Uncharacterized ABC tra 99.8 2.7E-22 9.2E-27 166.5 -8.8 136 1-148 374-531 (598)
44 2yl4_A ATP-binding cassette SU 99.8 5.3E-22 1.8E-26 164.7 -7.7 136 1-148 363-523 (595)
45 4a82_A Cystic fibrosis transme 99.8 3.2E-22 1.1E-26 165.5 -9.2 136 1-148 360-517 (578)
46 3qf4_A ABC transporter, ATP-bi 99.8 3.3E-22 1.1E-26 165.7 -10.1 137 1-149 362-520 (587)
47 1yqt_A RNAse L inhibitor; ATP- 99.8 6.2E-22 2.1E-26 162.5 -8.5 127 1-147 41-197 (538)
48 3bk7_A ABC transporter ATP-bin 99.8 1.2E-21 4.1E-26 162.6 -8.2 125 4-147 113-267 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.7 3E-20 1E-24 152.5 -2.6 128 1-149 305-442 (538)
50 3j16_B RLI1P; ribosome recycli 99.7 4.6E-22 1.6E-26 165.0 -13.7 132 4-149 99-262 (608)
51 3bk7_A ABC transporter ATP-bin 99.7 2.4E-20 8.3E-25 154.8 -3.5 127 1-148 375-511 (607)
52 3j16_B RLI1P; ribosome recycli 99.7 2.6E-21 9E-26 160.5 -9.7 126 1-147 366-506 (608)
53 3ozx_A RNAse L inhibitor; ATP 99.7 2.9E-20 9.8E-25 152.5 -3.8 125 5-148 22-178 (538)
54 4f4c_A Multidrug resistance pr 99.7 8E-20 2.7E-24 162.7 -6.9 134 1-145 1098-1254(1321)
55 3ux8_A Excinuclease ABC, A sub 99.7 9.1E-19 3.1E-23 147.0 -1.2 57 81-150 186-246 (670)
56 3g5u_A MCG1178, multidrug resi 99.7 1.3E-19 4.4E-24 161.0 -8.6 135 1-147 409-565 (1284)
57 4f4c_A Multidrug resistance pr 99.7 9.9E-19 3.4E-23 155.7 -3.5 135 1-147 437-593 (1321)
58 3g5u_A MCG1178, multidrug resi 99.7 3.7E-19 1.3E-23 158.0 -6.2 136 1-148 1052-1211(1284)
59 2npi_A Protein CLP1; CLP1-PCF1 99.7 5.4E-19 1.8E-23 142.5 -5.6 123 1-142 131-276 (460)
60 2iw3_A Elongation factor 3A; a 99.7 3.6E-19 1.2E-23 153.4 -8.6 41 1-41 692-734 (986)
61 3b85_A Phosphate starvation-in 99.6 4.5E-17 1.5E-21 118.7 2.3 106 5-135 19-134 (208)
62 2iw3_A Elongation factor 3A; a 99.6 9.9E-19 3.4E-23 150.7 -7.7 126 1-150 454-590 (986)
63 4gp7_A Metallophosphoesterase; 99.6 7.1E-18 2.4E-22 119.3 -5.4 27 1-27 2-28 (171)
64 3ux8_A Excinuclease ABC, A sub 99.6 6.3E-18 2.1E-22 142.0 -6.8 46 94-150 538-588 (670)
65 1tq4_A IIGP1, interferon-induc 99.6 6.9E-17 2.4E-21 128.5 -4.0 118 1-147 42-205 (413)
66 3aez_A Pantothenate kinase; tr 99.5 3.1E-16 1.1E-20 120.7 -1.2 114 5-135 87-206 (312)
67 3b9q_A Chloroplast SRP recepto 99.5 1.6E-15 5.6E-20 116.2 2.7 125 1-144 93-238 (302)
68 1ye8_A Protein THEP1, hypothet 99.5 3.1E-16 1.1E-20 111.7 -1.7 113 10-148 2-123 (178)
69 2og2_A Putative signal recogni 99.5 4E-15 1.4E-19 116.4 1.5 125 1-144 150-295 (359)
70 2v9p_A Replication protein E1; 99.5 7.8E-16 2.7E-20 118.0 -4.3 115 1-148 119-233 (305)
71 3sop_A Neuronal-specific septi 99.5 2.7E-14 9.3E-19 107.8 3.6 110 10-135 4-125 (270)
72 2r6f_A Excinuclease ABC subuni 99.4 7.8E-16 2.7E-20 132.2 -5.7 45 94-149 840-889 (972)
73 2ygr_A Uvrabc system protein A 99.4 2.1E-15 7.1E-20 129.9 -4.5 44 94-148 858-906 (993)
74 2vf7_A UVRA2, excinuclease ABC 99.4 7.2E-17 2.5E-21 137.7 -13.5 55 81-148 714-773 (842)
75 2pt7_A CAG-ALFA; ATPase, prote 99.4 3.9E-14 1.3E-18 109.8 1.4 42 1-42 164-207 (330)
76 4aby_A DNA repair protein RECN 99.4 8E-16 2.7E-20 122.2 -8.6 38 105-148 296-337 (415)
77 2jeo_A Uridine-cytidine kinase 99.4 1.3E-12 4.6E-17 96.9 7.4 32 1-32 18-49 (245)
78 1htw_A HI0065; nucleotide-bind 99.3 1.9E-13 6.4E-18 95.4 1.7 44 1-44 26-70 (158)
79 1z6g_A Guanylate kinase; struc 99.3 1.4E-12 4.7E-17 95.4 4.7 42 1-44 16-57 (218)
80 3pih_A Uvrabc system protein A 99.3 1.1E-14 3.9E-19 125.2 -7.4 44 94-148 800-848 (916)
81 1e69_A Chromosome segregation 99.3 3E-13 1E-17 104.4 1.1 43 94-147 214-262 (322)
82 2i3b_A HCR-ntpase, human cance 99.3 1.7E-12 5.9E-17 93.1 2.7 36 8-44 1-37 (189)
83 3thx_B DNA mismatch repair pro 99.2 9.8E-13 3.3E-17 113.4 0.2 104 1-144 666-770 (918)
84 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 7.9E-13 2.7E-17 103.8 -1.3 46 94-150 274-327 (365)
85 3thx_A DNA mismatch repair pro 99.2 1.9E-12 6.4E-17 111.8 -0.4 28 1-28 655-682 (934)
86 2x8a_A Nuclear valosin-contain 99.2 1.4E-11 4.7E-16 93.1 3.4 45 1-47 39-83 (274)
87 1tf7_A KAIC; homohexamer, hexa 99.1 3.7E-13 1.3E-17 110.2 -6.2 43 1-43 31-78 (525)
88 3euj_A Chromosome partition pr 99.1 2.7E-11 9.2E-16 97.9 2.4 46 1-47 23-70 (483)
89 2qnr_A Septin-2, protein NEDD5 99.1 8E-11 2.7E-15 90.1 4.7 33 11-44 21-56 (301)
90 3tr0_A Guanylate kinase, GMP k 99.1 1.1E-10 3.9E-15 83.6 4.9 41 2-44 1-41 (205)
91 1znw_A Guanylate kinase, GMP k 99.0 8.3E-11 2.8E-15 85.0 3.3 31 3-33 15-45 (207)
92 3szr_A Interferon-induced GTP- 99.0 1.2E-10 4.2E-15 96.8 4.4 34 11-44 48-84 (608)
93 3lnc_A Guanylate kinase, GMP k 99.0 8.2E-11 2.8E-15 86.3 2.7 32 1-32 20-52 (231)
94 1tf7_A KAIC; homohexamer, hexa 99.0 6.6E-12 2.3E-16 102.8 -3.7 107 2-142 275-386 (525)
95 1cr0_A DNA primase/helicase; R 99.0 3.1E-12 1E-16 97.3 -5.7 42 2-43 29-73 (296)
96 2gza_A Type IV secretion syste 99.0 9E-11 3.1E-15 91.9 2.5 42 1-42 168-211 (361)
97 1zp6_A Hypothetical protein AT 99.0 1.9E-10 6.3E-15 81.7 3.6 40 4-43 5-44 (191)
98 1wb9_A DNA mismatch repair pro 99.0 1.4E-10 4.9E-15 98.9 3.3 29 2-31 602-630 (800)
99 2o8b_B DNA mismatch repair pro 99.0 2E-11 6.8E-16 106.5 -2.2 31 2-33 776-813 (1022)
100 3ec2_A DNA replication protein 99.0 1.1E-10 3.7E-15 82.5 1.6 32 2-33 32-63 (180)
101 2eyu_A Twitching motility prot 99.0 1.4E-10 4.9E-15 87.0 2.0 41 4-44 21-64 (261)
102 1s96_A Guanylate kinase, GMP k 99.0 2.9E-10 1E-14 83.2 3.4 40 4-43 12-55 (219)
103 3qkt_A DNA double-strand break 98.9 3.8E-11 1.3E-15 93.2 -2.1 43 94-147 243-293 (339)
104 1lvg_A Guanylate kinase, GMP k 98.9 3.5E-10 1.2E-14 81.3 2.9 28 5-32 1-28 (198)
105 2yhs_A FTSY, cell division pro 98.9 2.8E-10 9.5E-15 92.1 2.5 44 1-44 286-331 (503)
106 2qag_C Septin-7; cell cycle, c 98.9 3.9E-09 1.3E-13 84.1 8.3 109 11-135 34-152 (418)
107 2qm8_A GTPase/ATPase; G protei 98.9 4.2E-10 1.4E-14 87.3 2.1 46 1-46 48-95 (337)
108 1nlf_A Regulatory protein REPA 98.9 1.8E-11 6.3E-16 92.4 -6.0 31 5-35 27-57 (279)
109 2obl_A ESCN; ATPase, hydrolase 98.9 9.2E-10 3.2E-14 85.7 3.1 40 3-42 66-107 (347)
110 2dpy_A FLII, flagellum-specifi 98.9 9.1E-10 3.1E-14 88.3 3.0 40 3-42 152-193 (438)
111 3a00_A Guanylate kinase, GMP k 98.9 1.3E-09 4.5E-14 77.4 3.5 26 8-33 1-26 (186)
112 3c8u_A Fructokinase; YP_612366 98.8 4.1E-10 1.4E-14 81.4 0.3 39 5-43 19-62 (208)
113 1rj9_A FTSY, signal recognitio 98.8 1.2E-09 4E-14 83.7 2.8 41 7-47 101-143 (304)
114 4a74_A DNA repair and recombin 98.8 1.5E-09 5.1E-14 78.9 3.0 28 4-31 21-48 (231)
115 2oap_1 GSPE-2, type II secreti 98.8 1.2E-09 4E-14 89.2 2.4 41 2-42 254-296 (511)
116 1sq5_A Pantothenate kinase; P- 98.8 8.6E-10 2.9E-14 84.5 1.4 38 6-43 78-122 (308)
117 3e70_C DPA, signal recognition 98.8 2.1E-09 7E-14 83.2 3.6 44 5-48 126-171 (328)
118 3m6a_A ATP-dependent protease 98.8 2.1E-09 7.3E-14 88.3 3.8 149 3-159 104-257 (543)
119 1ixz_A ATP-dependent metallopr 98.8 9.4E-09 3.2E-13 76.2 6.9 43 1-45 44-86 (254)
120 1u0l_A Probable GTPase ENGC; p 98.8 2E-09 6.7E-14 82.3 3.0 43 4-46 165-212 (301)
121 2ehv_A Hypothetical protein PH 98.8 2.1E-09 7.3E-14 79.0 3.1 28 4-31 26-55 (251)
122 1qhl_A Protein (cell division 98.8 1.7E-10 5.9E-15 84.9 -3.1 43 3-46 23-67 (227)
123 1lw7_A Transcriptional regulat 98.8 2.9E-09 9.9E-14 83.3 3.5 39 1-39 161-207 (365)
124 1odf_A YGR205W, hypothetical 3 98.8 2.4E-10 8.3E-15 87.0 -3.0 29 6-34 29-57 (290)
125 1ewq_A DNA mismatch repair pro 98.8 7.6E-10 2.6E-14 94.0 -0.4 25 8-32 576-600 (765)
126 2qag_B Septin-6, protein NEDD5 98.7 2.4E-09 8.1E-14 85.4 2.2 32 1-32 33-66 (427)
127 2j41_A Guanylate kinase; GMP, 98.7 6.4E-09 2.2E-13 74.4 4.0 31 4-34 2-32 (207)
128 1ls1_A Signal recognition part 98.7 3.8E-09 1.3E-13 80.5 2.9 39 7-45 97-137 (295)
129 4eun_A Thermoresistant glucoki 98.7 4.1E-09 1.4E-13 75.6 2.7 38 5-44 26-63 (200)
130 1kgd_A CASK, peripheral plasma 98.7 6.7E-09 2.3E-13 73.4 3.6 27 7-33 4-30 (180)
131 1p9r_A General secretion pathw 98.7 5.4E-09 1.9E-13 83.3 3.3 41 5-45 164-206 (418)
132 1t9h_A YLOQ, probable GTPase E 98.7 2.1E-09 7E-14 82.4 0.7 42 3-44 168-214 (307)
133 2yv5_A YJEQ protein; hydrolase 98.7 8.6E-09 3E-13 78.8 3.7 41 4-45 161-206 (302)
134 3uie_A Adenylyl-sulfate kinase 98.7 4.5E-09 1.5E-13 75.4 1.1 42 3-44 20-64 (200)
135 2bdt_A BH3686; alpha-beta prot 98.6 8.2E-09 2.8E-13 73.2 2.3 36 8-44 2-37 (189)
136 3asz_A Uridine kinase; cytidin 98.6 1.3E-08 4.3E-13 73.3 3.0 30 5-34 3-32 (211)
137 2ewv_A Twitching motility prot 98.6 7.7E-09 2.6E-13 81.3 1.9 41 3-43 131-174 (372)
138 3tau_A Guanylate kinase, GMP k 98.6 2.2E-08 7.4E-13 72.4 4.1 30 5-34 5-34 (208)
139 2vp4_A Deoxynucleoside kinase; 98.6 1.3E-08 4.6E-13 74.6 3.0 41 3-45 15-55 (230)
140 3ney_A 55 kDa erythrocyte memb 98.6 2.3E-08 7.7E-13 72.0 3.7 31 3-33 14-44 (197)
141 3kta_A Chromosome segregation 98.6 1.8E-08 6E-13 71.0 2.9 32 2-34 21-52 (182)
142 2rcn_A Probable GTPase ENGC; Y 98.6 2.4E-08 8.4E-13 77.9 3.8 35 6-40 213-250 (358)
143 1nij_A Hypothetical protein YJ 98.6 3.4E-08 1.2E-12 75.9 4.4 40 8-47 4-53 (318)
144 3vaa_A Shikimate kinase, SK; s 98.6 2.8E-08 9.4E-13 71.2 3.5 32 1-32 18-49 (199)
145 3jvv_A Twitching mobility prot 98.6 9.6E-09 3.3E-13 80.3 0.8 31 4-34 119-149 (356)
146 1iy2_A ATP-dependent metallopr 98.5 4.3E-08 1.5E-12 73.7 3.8 43 1-45 68-110 (278)
147 2dhr_A FTSH; AAA+ protein, hex 98.5 1.6E-07 5.5E-12 76.4 7.0 43 2-46 60-102 (499)
148 4e22_A Cytidylate kinase; P-lo 98.5 2.3E-08 7.8E-13 74.4 1.6 34 5-38 24-62 (252)
149 2w0m_A SSO2452; RECA, SSPF, un 98.5 3.1E-08 1.1E-12 71.8 2.3 40 4-43 19-60 (235)
150 1knq_A Gluconate kinase; ALFA/ 98.5 5.1E-08 1.7E-12 68.1 3.3 38 5-44 5-42 (175)
151 2bbw_A Adenylate kinase 4, AK4 98.5 1.8E-08 6.1E-13 74.5 0.7 36 7-42 26-66 (246)
152 2kjq_A DNAA-related protein; s 98.5 2.9E-08 9.9E-13 68.3 1.1 35 7-41 35-72 (149)
153 1rz3_A Hypothetical protein rb 98.5 8.1E-08 2.8E-12 68.9 3.5 41 4-44 18-60 (201)
154 1pui_A ENGB, probable GTP-bind 98.5 3.8E-08 1.3E-12 70.4 1.6 30 3-32 21-50 (210)
155 1ypw_A Transitional endoplasmi 98.5 3E-07 1E-11 78.8 7.1 133 2-158 232-375 (806)
156 1pzn_A RAD51, DNA repair and r 98.4 6.2E-08 2.1E-12 75.4 2.6 42 2-43 125-175 (349)
157 1sxj_C Activator 1 40 kDa subu 98.4 2.3E-07 7.9E-12 71.6 5.6 129 3-157 39-171 (340)
158 1kag_A SKI, shikimate kinase I 98.4 1.3E-07 4.3E-12 65.8 3.8 27 7-33 3-29 (173)
159 1n0w_A DNA repair protein RAD5 98.4 9.4E-08 3.2E-12 69.9 3.1 28 4-31 20-47 (243)
160 2f1r_A Molybdopterin-guanine d 98.4 2.1E-08 7E-13 70.6 -0.7 37 9-45 3-44 (171)
161 1vma_A Cell division protein F 98.4 1E-07 3.6E-12 72.9 3.1 43 2-44 98-142 (306)
162 3nwj_A ATSK2; P loop, shikimat 98.4 9.2E-08 3.1E-12 71.2 1.9 32 1-32 38-72 (250)
163 1zu4_A FTSY; GTPase, signal re 98.4 1.3E-07 4.5E-12 72.8 2.7 44 1-44 98-143 (320)
164 3cf0_A Transitional endoplasmi 98.4 1.1E-06 3.8E-11 66.8 7.7 133 4-159 45-190 (301)
165 1svm_A Large T antigen; AAA+ f 98.4 1.4E-07 4.7E-12 74.2 2.6 35 2-37 163-197 (377)
166 2chg_A Replication factor C sm 98.3 4E-06 1.4E-10 59.7 9.5 125 9-159 39-165 (226)
167 3cr8_A Sulfate adenylyltranfer 98.3 1.4E-07 4.6E-12 77.7 1.8 41 4-44 365-409 (552)
168 2qt1_A Nicotinamide riboside k 98.3 3.4E-07 1.2E-11 65.7 3.4 29 4-32 17-45 (207)
169 1oix_A RAS-related protein RAB 98.3 4E-07 1.4E-11 64.5 3.4 23 10-32 31-53 (191)
170 2o5v_A DNA replication and rep 98.3 2.4E-07 8.2E-12 72.4 2.5 43 94-147 259-313 (359)
171 2qor_A Guanylate kinase; phosp 98.3 4.6E-07 1.6E-11 65.0 3.8 30 4-33 8-37 (204)
172 4fcw_A Chaperone protein CLPB; 98.3 1.5E-06 5.1E-11 65.8 6.6 117 9-132 48-169 (311)
173 2cvh_A DNA repair and recombin 98.3 4.6E-07 1.6E-11 65.2 3.6 27 4-30 16-42 (220)
174 2bjv_A PSP operon transcriptio 98.3 8.4E-06 2.9E-10 60.5 10.4 141 6-156 27-178 (265)
175 3tqc_A Pantothenate kinase; bi 98.3 2.2E-07 7.5E-12 71.6 1.8 33 10-42 94-130 (321)
176 1w1w_A Structural maintenance 98.3 4.4E-07 1.5E-11 72.3 3.5 31 3-33 21-51 (430)
177 2r44_A Uncharacterized protein 98.3 3.6E-06 1.2E-10 64.5 8.5 141 6-159 44-189 (331)
178 1udx_A The GTP-binding protein 98.3 2.6E-07 8.8E-12 73.6 1.9 32 1-32 150-181 (416)
179 3h4m_A Proteasome-activating n 98.2 7.4E-07 2.5E-11 66.8 4.0 134 5-159 48-192 (285)
180 1in4_A RUVB, holliday junction 98.2 1.7E-07 5.9E-12 72.4 0.6 24 9-32 52-75 (334)
181 1jbk_A CLPB protein; beta barr 98.2 2E-06 6.8E-11 59.9 5.8 133 7-159 42-189 (195)
182 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 7.3E-07 2.5E-11 70.4 3.8 27 4-30 16-42 (392)
183 3k1j_A LON protease, ATP-depen 98.2 4.8E-07 1.7E-11 75.1 2.3 33 2-34 54-86 (604)
184 1cke_A CK, MSSA, protein (cyti 98.1 1.2E-06 4.3E-11 63.4 3.5 26 7-32 4-29 (227)
185 2px0_A Flagellar biosynthesis 98.1 7.1E-07 2.4E-11 68.0 2.2 39 6-44 103-144 (296)
186 1xwi_A SKD1 protein; VPS4B, AA 98.1 2.7E-05 9.1E-10 59.8 10.9 134 6-159 43-183 (322)
187 1sxj_D Activator 1 41 kDa subu 98.1 6.3E-06 2.2E-10 63.3 7.4 129 9-158 59-195 (353)
188 3pfi_A Holliday junction ATP-d 98.1 2.7E-05 9.3E-10 59.6 10.9 123 9-159 56-188 (338)
189 1y63_A LMAJ004144AAA protein; 98.1 1.6E-06 5.4E-11 61.2 3.6 31 1-31 3-33 (184)
190 2p67_A LAO/AO transport system 98.1 8.3E-07 2.8E-11 68.8 2.0 43 2-44 50-94 (341)
191 2qz4_A Paraplegin; AAA+, SPG7, 98.1 9.3E-06 3.2E-10 59.8 7.6 27 6-32 37-63 (262)
192 2pez_A Bifunctional 3'-phospho 98.1 1.6E-06 5.6E-11 60.7 3.2 27 6-32 3-29 (179)
193 1ex7_A Guanylate kinase; subst 98.1 1.7E-06 5.9E-11 61.5 3.4 24 9-32 2-25 (186)
194 3lda_A DNA repair protein RAD5 98.1 1.5E-06 5.2E-11 68.8 3.1 29 5-33 175-205 (400)
195 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 1.5E-06 5.2E-11 59.6 2.7 24 5-29 21-44 (149)
196 2www_A Methylmalonic aciduria 98.1 1.1E-06 3.8E-11 68.3 2.2 38 7-44 73-112 (349)
197 3u61_B DNA polymerase accessor 98.1 1.1E-05 3.6E-10 61.6 7.5 119 9-158 49-168 (324)
198 3f9v_A Minichromosome maintena 98.1 1.4E-06 4.8E-11 72.3 2.6 137 10-156 329-479 (595)
199 2p5t_B PEZT; postsegregational 98.1 1.9E-06 6.4E-11 63.9 3.0 40 5-44 29-68 (253)
200 1sxj_E Activator 1 40 kDa subu 98.1 2.3E-06 7.8E-11 66.0 3.5 36 9-44 37-75 (354)
201 1jjv_A Dephospho-COA kinase; P 98.0 2.1E-06 7.1E-11 61.4 3.0 21 10-30 4-24 (206)
202 1ojl_A Transcriptional regulat 98.0 5.7E-05 2E-09 57.5 11.0 141 6-156 23-174 (304)
203 1njg_A DNA polymerase III subu 98.0 3.8E-05 1.3E-09 55.1 9.6 23 10-32 47-69 (250)
204 2zan_A Vacuolar protein sortin 98.0 3.3E-06 1.1E-10 67.6 4.2 136 6-159 165-305 (444)
205 2f9l_A RAB11B, member RAS onco 98.0 2.6E-06 8.9E-11 60.4 3.2 23 10-32 7-29 (199)
206 3pvs_A Replication-associated 98.0 1.8E-05 6.3E-10 63.4 8.3 116 10-159 52-169 (447)
207 1qhx_A CPT, protein (chloramph 98.0 3.9E-06 1.3E-10 58.4 3.9 26 8-33 3-28 (178)
208 1gvn_B Zeta; postsegregational 98.0 3.8E-06 1.3E-10 63.6 3.9 36 6-41 31-66 (287)
209 1sxj_A Activator 1 95 kDa subu 98.0 0.0001 3.5E-09 60.0 12.6 94 8-107 77-177 (516)
210 1ofh_A ATP-dependent HSL prote 98.0 1.1E-05 3.6E-10 60.8 6.1 145 7-159 49-206 (310)
211 4eaq_A DTMP kinase, thymidylat 98.0 2.9E-06 9.8E-11 62.2 2.8 29 6-34 24-52 (229)
212 2if2_A Dephospho-COA kinase; a 98.0 3.2E-06 1.1E-10 60.3 2.9 21 10-30 3-23 (204)
213 4b4t_J 26S protease regulatory 98.0 2E-05 6.8E-10 62.4 7.6 131 5-159 179-323 (405)
214 3t61_A Gluconokinase; PSI-biol 98.0 4.6E-06 1.6E-10 59.5 3.6 25 8-32 18-42 (202)
215 1m7g_A Adenylylsulfate kinase; 98.0 3.7E-06 1.3E-10 60.5 3.0 39 3-41 20-62 (211)
216 2yvu_A Probable adenylyl-sulfa 98.0 4.9E-06 1.7E-10 58.5 3.6 30 4-33 9-38 (186)
217 2dr3_A UPF0273 protein PH0284; 98.0 4.1E-06 1.4E-10 61.1 3.1 27 4-30 19-45 (247)
218 3cm0_A Adenylate kinase; ATP-b 97.9 3.9E-06 1.3E-10 58.8 2.7 27 6-32 2-28 (186)
219 1hqc_A RUVB; extended AAA-ATPa 97.9 0.0001 3.6E-09 55.8 10.9 129 7-159 37-172 (324)
220 3t15_A Ribulose bisphosphate c 97.9 1.6E-05 5.6E-10 60.2 6.2 141 7-158 35-188 (293)
221 2qp9_X Vacuolar protein sortin 97.9 6.5E-06 2.2E-10 64.0 4.1 130 6-159 82-221 (355)
222 2gj8_A MNME, tRNA modification 97.9 5.1E-06 1.7E-10 57.7 2.8 26 6-31 2-27 (172)
223 1ega_A Protein (GTP-binding pr 97.9 4.1E-06 1.4E-10 63.8 2.5 30 2-31 2-31 (301)
224 3nbx_X ATPase RAVA; AAA+ ATPas 97.9 3E-05 1E-09 63.1 7.7 29 5-33 38-66 (500)
225 1j8m_F SRP54, signal recogniti 97.9 3.6E-06 1.2E-10 64.1 2.0 43 2-45 93-137 (297)
226 3eie_A Vacuolar protein sortin 97.9 7.1E-06 2.4E-10 62.9 3.5 27 7-33 50-76 (322)
227 3kb2_A SPBC2 prophage-derived 97.9 6.9E-06 2.4E-10 56.6 3.1 23 10-32 3-25 (173)
228 1lv7_A FTSH; alpha/beta domain 97.9 6E-06 2.1E-10 61.0 2.7 34 8-41 45-78 (257)
229 3iij_A Coilin-interacting nucl 97.9 1.1E-05 3.7E-10 56.4 3.9 29 4-32 7-35 (180)
230 2ffh_A Protein (FFH); SRP54, s 97.9 7E-06 2.4E-10 65.4 3.1 38 7-44 97-136 (425)
231 4b4t_L 26S protease subunit RP 97.9 4E-05 1.4E-09 61.3 7.4 29 5-33 212-240 (437)
232 2rhm_A Putative kinase; P-loop 97.8 9.4E-06 3.2E-10 57.1 3.2 28 5-32 2-29 (193)
233 1np6_A Molybdopterin-guanine d 97.8 1.1E-05 3.6E-10 56.8 3.2 25 8-32 6-30 (174)
234 2v54_A DTMP kinase, thymidylat 97.8 1.4E-05 4.8E-10 56.7 3.8 27 6-32 2-28 (204)
235 3lw7_A Adenylate kinase relate 97.8 9.4E-06 3.2E-10 55.8 2.8 22 10-32 3-24 (179)
236 1kht_A Adenylate kinase; phosp 97.8 1.2E-05 4E-10 56.4 3.3 25 8-32 3-27 (192)
237 2ga8_A Hypothetical 39.9 kDa p 97.8 8.8E-06 3E-10 63.4 2.8 31 2-32 16-48 (359)
238 2wji_A Ferrous iron transport 97.8 1.1E-05 3.6E-10 55.5 2.9 22 10-31 5-26 (165)
239 3uk6_A RUVB-like 2; hexameric 97.8 2.9E-05 1E-09 60.0 5.4 27 7-33 69-95 (368)
240 1q3t_A Cytidylate kinase; nucl 97.8 1.5E-05 5E-10 58.3 3.5 27 6-32 14-40 (236)
241 3trf_A Shikimate kinase, SK; a 97.8 1.5E-05 5.1E-10 55.8 3.3 26 7-32 4-29 (185)
242 2ius_A DNA translocase FTSK; n 97.8 2.2E-05 7.7E-10 63.9 4.7 44 2-45 161-208 (512)
243 3n70_A Transport activator; si 97.8 4.8E-05 1.7E-09 51.4 5.7 28 6-33 22-49 (145)
244 3qks_A DNA double-strand break 97.8 1.3E-05 4.6E-10 57.5 3.0 21 9-29 24-44 (203)
245 1g8p_A Magnesium-chelatase 38 97.8 8.4E-05 2.9E-09 56.9 7.7 73 76-157 145-220 (350)
246 1r6b_X CLPA protein; AAA+, N-t 97.7 6.6E-05 2.2E-09 63.8 7.5 139 10-158 490-656 (758)
247 2ze6_A Isopentenyl transferase 97.7 1.4E-05 4.7E-10 59.4 2.9 24 9-32 2-25 (253)
248 3vfd_A Spastin; ATPase, microt 97.7 0.0001 3.4E-09 57.8 8.1 27 7-33 147-173 (389)
249 3pxg_A Negative regulator of g 97.7 9.7E-06 3.3E-10 65.3 2.3 37 123-159 291-329 (468)
250 3cf2_A TER ATPase, transitiona 97.7 5.4E-05 1.9E-09 64.7 6.9 132 4-159 234-376 (806)
251 1uf9_A TT1252 protein; P-loop, 97.7 2.5E-05 8.6E-10 55.3 4.1 31 7-40 7-37 (203)
252 1via_A Shikimate kinase; struc 97.7 1.8E-05 6.3E-10 55.0 3.3 23 10-32 6-28 (175)
253 1ly1_A Polynucleotide kinase; 97.7 1.7E-05 5.8E-10 55.0 3.1 22 9-30 3-24 (181)
254 1vht_A Dephospho-COA kinase; s 97.7 1.9E-05 6.4E-10 56.9 3.3 24 7-30 3-26 (218)
255 2wjg_A FEOB, ferrous iron tran 97.7 1.7E-05 6E-10 55.2 3.0 22 10-31 9-30 (188)
256 2zej_A Dardarin, leucine-rich 97.7 1.5E-05 5.1E-10 55.8 2.6 22 10-31 4-25 (184)
257 1qvr_A CLPB protein; coiled co 97.7 1.4E-05 4.9E-10 68.8 2.9 129 7-159 190-336 (854)
258 1f2t_B RAD50 ABC-ATPase; DNA d 97.7 6.7E-07 2.3E-11 61.4 -4.4 44 94-148 52-103 (148)
259 2c95_A Adenylate kinase 1; tra 97.7 2E-05 6.9E-10 55.5 3.1 28 5-32 6-33 (196)
260 1fnn_A CDC6P, cell division co 97.7 6.2E-05 2.1E-09 58.3 5.9 40 10-49 46-86 (389)
261 1mky_A Probable GTP-binding pr 97.7 2.3E-05 8E-10 62.6 3.5 23 10-32 182-204 (439)
262 4b4t_H 26S protease regulatory 97.7 8.4E-05 2.9E-09 59.7 6.7 29 5-33 240-268 (467)
263 3hr8_A Protein RECA; alpha and 97.7 1.9E-05 6.7E-10 61.5 2.8 33 5-37 58-92 (356)
264 2jaq_A Deoxyguanosine kinase; 97.7 2.4E-05 8.1E-10 55.4 3.1 23 10-32 2-24 (205)
265 3t34_A Dynamin-related protein 97.7 2.9E-05 9.9E-10 60.4 3.8 26 10-35 36-63 (360)
266 2plr_A DTMP kinase, probable t 97.7 2.5E-05 8.6E-10 55.6 3.2 27 7-33 3-29 (213)
267 2wwf_A Thymidilate kinase, put 97.7 3.2E-05 1.1E-09 55.1 3.8 27 5-31 7-33 (212)
268 3bos_A Putative DNA replicatio 97.7 2.7E-05 9.4E-10 56.2 3.4 26 7-32 51-76 (242)
269 1nn5_A Similar to deoxythymidy 97.7 2.8E-05 9.7E-10 55.5 3.3 28 5-32 6-33 (215)
270 3r20_A Cytidylate kinase; stru 97.6 2.8E-05 9.4E-10 57.2 3.1 26 7-32 8-33 (233)
271 3b9p_A CG5977-PA, isoform A; A 97.6 3.1E-05 1.1E-09 58.2 3.4 27 7-33 53-79 (297)
272 4b4t_I 26S protease regulatory 97.6 5.7E-05 1.9E-09 60.2 5.0 29 5-33 213-241 (437)
273 1sxj_B Activator 1 37 kDa subu 97.6 3.9E-05 1.3E-09 58.0 4.0 125 10-159 44-170 (323)
274 4ad8_A DNA repair protein RECN 97.6 7.5E-06 2.6E-10 66.8 -0.1 37 105-147 398-438 (517)
275 3pxi_A Negative regulator of g 97.6 6.1E-06 2.1E-10 70.2 -0.6 37 123-159 291-329 (758)
276 1nks_A Adenylate kinase; therm 97.6 3E-05 1E-09 54.3 2.9 23 10-32 3-25 (194)
277 1tev_A UMP-CMP kinase; ploop, 97.6 3.2E-05 1.1E-09 54.2 3.1 25 8-32 3-27 (196)
278 1gtv_A TMK, thymidylate kinase 97.6 1.3E-05 4.5E-10 57.3 1.0 23 10-32 2-24 (214)
279 2bwj_A Adenylate kinase 5; pho 97.6 2E-05 7E-10 55.6 2.0 28 5-32 9-36 (199)
280 3lxx_A GTPase IMAP family memb 97.6 3.2E-05 1.1E-09 56.5 3.1 23 10-32 31-53 (239)
281 3ice_A Transcription terminati 97.6 2.9E-05 9.9E-10 61.2 2.9 31 2-32 168-198 (422)
282 2ce7_A Cell division protein F 97.6 4.1E-05 1.4E-09 61.9 3.5 24 9-32 50-73 (476)
283 2vli_A Antibiotic resistance p 97.6 2.8E-05 9.5E-10 54.2 2.2 26 7-32 4-29 (183)
284 1zd8_A GTP:AMP phosphotransfer 97.6 3.8E-05 1.3E-09 55.7 3.0 27 6-32 5-31 (227)
285 1l8q_A Chromosomal replication 97.6 4.7E-05 1.6E-09 58.1 3.6 26 7-32 36-61 (324)
286 2qby_A CDC6 homolog 1, cell di 97.6 4.5E-05 1.5E-09 58.9 3.6 27 6-32 43-69 (386)
287 1xjc_A MOBB protein homolog; s 97.6 4.3E-05 1.5E-09 53.4 3.1 25 9-33 5-29 (169)
288 1f6b_A SAR1; gtpases, N-termin 97.5 2E-05 6.8E-10 55.9 1.3 28 2-30 20-47 (198)
289 3auy_A DNA double-strand break 97.5 3.3E-05 1.1E-09 60.4 2.6 42 95-147 276-326 (371)
290 2w58_A DNAI, primosome compone 97.5 4.9E-05 1.7E-09 53.9 3.3 24 9-32 55-78 (202)
291 1zak_A Adenylate kinase; ATP:A 97.5 5.2E-05 1.8E-09 54.7 3.5 27 6-32 3-29 (222)
292 1ypw_A Transitional endoplasmi 97.5 2.2E-05 7.6E-10 67.3 1.7 42 2-43 505-546 (806)
293 1aky_A Adenylate kinase; ATP:A 97.5 5.2E-05 1.8E-09 54.7 3.4 26 7-32 3-28 (220)
294 2iyv_A Shikimate kinase, SK; t 97.5 5.5E-05 1.9E-09 52.9 3.5 23 9-31 3-25 (184)
295 2zr9_A Protein RECA, recombina 97.5 4.2E-05 1.4E-09 59.5 3.1 37 5-41 58-96 (349)
296 3hu3_A Transitional endoplasmi 97.5 8.5E-05 2.9E-09 60.3 5.0 28 5-32 235-262 (489)
297 3k53_A Ferrous iron transport 97.5 4.4E-05 1.5E-09 56.9 3.0 23 10-32 5-27 (271)
298 1iqp_A RFCS; clamp loader, ext 97.5 7E-05 2.4E-09 56.7 4.1 123 10-158 48-172 (327)
299 2cdn_A Adenylate kinase; phosp 97.5 6.5E-05 2.2E-09 53.3 3.6 27 6-32 18-44 (201)
300 2p65_A Hypothetical protein PF 97.5 4.5E-05 1.5E-09 52.8 2.7 130 7-156 42-187 (187)
301 3llm_A ATP-dependent RNA helic 97.5 3.7E-05 1.3E-09 56.2 2.3 25 5-29 73-97 (235)
302 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 5.5E-05 1.9E-09 56.2 3.2 26 6-31 2-27 (260)
303 1ukz_A Uridylate kinase; trans 97.5 6E-05 2.1E-09 53.5 3.3 27 6-32 13-39 (203)
304 1e6c_A Shikimate kinase; phosp 97.5 6.4E-05 2.2E-09 51.8 3.4 24 9-32 3-26 (173)
305 1zuh_A Shikimate kinase; alpha 97.5 5.9E-05 2E-09 52.0 3.2 26 7-32 6-31 (168)
306 1m2o_B GTP-binding protein SAR 97.5 5.5E-05 1.9E-09 53.2 3.0 28 3-31 19-46 (190)
307 3fb4_A Adenylate kinase; psych 97.5 5.4E-05 1.9E-09 54.3 3.0 23 10-32 2-24 (216)
308 2z0h_A DTMP kinase, thymidylat 97.5 5.7E-05 2E-09 53.1 3.0 23 10-32 2-24 (197)
309 1z2a_A RAS-related protein RAB 97.5 6.5E-05 2.2E-09 51.0 3.1 22 10-31 7-28 (168)
310 2dy1_A Elongation factor G; tr 97.5 4.5E-05 1.5E-09 64.1 2.7 30 2-31 3-32 (665)
311 2ged_A SR-beta, signal recogni 97.5 6.4E-05 2.2E-09 52.6 3.2 23 10-32 50-72 (193)
312 3dl0_A Adenylate kinase; phosp 97.5 5.6E-05 1.9E-09 54.2 2.8 23 10-32 2-24 (216)
313 2ohf_A Protein OLA1, GTP-bindi 97.5 7.6E-05 2.6E-09 58.9 3.7 28 4-31 18-45 (396)
314 3ake_A Cytidylate kinase; CMP 97.5 6.6E-05 2.3E-09 53.3 3.0 23 10-32 4-26 (208)
315 1kao_A RAP2A; GTP-binding prot 97.5 7.5E-05 2.6E-09 50.5 3.2 22 10-31 5-26 (167)
316 2dyk_A GTP-binding protein; GT 97.4 7.6E-05 2.6E-09 50.4 3.2 22 10-31 3-24 (161)
317 2ce2_X GTPase HRAS; signaling 97.4 7E-05 2.4E-09 50.5 3.0 22 10-31 5-26 (166)
318 1qf9_A UMP/CMP kinase, protein 97.4 6.7E-05 2.3E-09 52.4 2.9 25 8-32 6-30 (194)
319 2pbr_A DTMP kinase, thymidylat 97.4 7.2E-05 2.5E-09 52.4 3.0 23 10-32 2-24 (195)
320 1a7j_A Phosphoribulokinase; tr 97.4 4E-05 1.4E-09 58.0 1.8 25 7-31 4-28 (290)
321 4ag6_A VIRB4 ATPase, type IV s 97.4 7.7E-05 2.6E-09 58.5 3.4 25 7-31 34-58 (392)
322 3umf_A Adenylate kinase; rossm 97.4 8.8E-05 3E-09 53.9 3.5 29 4-32 25-53 (217)
323 1u8z_A RAS-related protein RAL 97.4 8.1E-05 2.8E-09 50.4 3.1 22 10-31 6-27 (168)
324 1ek0_A Protein (GTP-binding pr 97.4 8.1E-05 2.8E-09 50.6 3.1 22 10-31 5-26 (170)
325 1z0j_A RAB-22, RAS-related pro 97.4 8.3E-05 2.8E-09 50.6 3.2 23 10-32 8-30 (170)
326 1jr3_A DNA polymerase III subu 97.4 0.001 3.5E-08 51.2 9.7 23 10-32 40-62 (373)
327 2erx_A GTP-binding protein DI- 97.4 8.1E-05 2.8E-09 50.7 3.1 22 10-31 5-26 (172)
328 2nzj_A GTP-binding protein REM 97.4 7.6E-05 2.6E-09 51.1 2.9 22 10-31 6-27 (175)
329 3tlx_A Adenylate kinase 2; str 97.4 8.4E-05 2.9E-09 54.7 3.3 27 6-32 27-53 (243)
330 1z08_A RAS-related protein RAB 97.4 8.5E-05 2.9E-09 50.6 3.2 22 10-31 8-29 (170)
331 2qtf_A Protein HFLX, GTP-bindi 97.4 6.9E-05 2.4E-09 58.6 3.0 26 7-32 177-203 (364)
332 2pt5_A Shikimate kinase, SK; a 97.4 8.3E-05 2.9E-09 51.0 3.1 23 10-32 2-24 (168)
333 1wms_A RAB-9, RAB9, RAS-relate 97.4 8.7E-05 3E-09 51.0 3.2 22 10-31 9-30 (177)
334 1g16_A RAS-related protein SEC 97.4 8.2E-05 2.8E-09 50.6 3.0 22 10-31 5-26 (170)
335 1ky3_A GTP-binding protein YPT 97.4 8.8E-05 3E-09 51.0 3.2 22 10-31 10-31 (182)
336 1c1y_A RAS-related protein RAP 97.4 9.2E-05 3.2E-09 50.2 3.1 22 10-31 5-26 (167)
337 2r62_A Cell division protease 97.4 4.1E-05 1.4E-09 56.7 1.3 27 6-32 42-68 (268)
338 3kl4_A SRP54, signal recogniti 97.4 5E-05 1.7E-09 60.6 1.9 38 7-44 96-135 (433)
339 3q72_A GTP-binding protein RAD 97.4 6.6E-05 2.2E-09 51.0 2.2 22 10-31 4-25 (166)
340 2fn4_A P23, RAS-related protei 97.4 9.3E-05 3.2E-09 50.9 3.0 22 10-31 11-32 (181)
341 1uj2_A Uridine-cytidine kinase 97.4 8.1E-05 2.8E-09 54.9 2.9 24 9-32 23-46 (252)
342 4akg_A Glutathione S-transfera 97.4 0.0026 9E-08 60.6 13.3 134 5-159 642-784 (2695)
343 2lkc_A Translation initiation 97.4 0.00013 4.3E-09 50.2 3.6 26 6-31 6-31 (178)
344 1svi_A GTP-binding protein YSX 97.4 8.3E-05 2.8E-09 52.0 2.7 23 9-31 24-46 (195)
345 3syl_A Protein CBBX; photosynt 97.4 0.0001 3.6E-09 55.5 3.4 26 7-32 66-91 (309)
346 1v5w_A DMC1, meiotic recombina 97.4 0.0001 3.5E-09 57.1 3.4 28 4-31 118-145 (343)
347 3q85_A GTP-binding protein REM 97.4 9.4E-05 3.2E-09 50.4 2.9 21 11-31 5-25 (169)
348 3pqc_A Probable GTP-binding pr 97.4 8.7E-05 3E-09 51.7 2.7 22 10-31 25-46 (195)
349 3co5_A Putative two-component 97.4 5.5E-05 1.9E-09 51.1 1.5 27 6-32 25-51 (143)
350 3lxw_A GTPase IMAP family memb 97.4 0.0001 3.4E-09 54.4 3.0 22 10-31 23-44 (247)
351 3clv_A RAB5 protein, putative; 97.4 0.00011 3.8E-09 51.3 3.2 22 10-31 9-30 (208)
352 1r2q_A RAS-related protein RAB 97.4 0.00011 3.9E-09 49.8 3.1 22 10-31 8-29 (170)
353 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00012 4E-09 50.8 3.2 22 10-31 6-27 (189)
354 3tw8_B RAS-related protein RAB 97.3 8.6E-05 2.9E-09 51.0 2.5 22 10-31 11-32 (181)
355 3bc1_A RAS-related protein RAB 97.3 0.00011 3.9E-09 50.9 3.1 22 10-31 13-34 (195)
356 2grj_A Dephospho-COA kinase; T 97.3 0.00011 3.8E-09 52.3 3.0 24 8-31 12-35 (192)
357 2oil_A CATX-8, RAS-related pro 97.3 0.00012 4E-09 51.3 3.1 22 10-31 27-48 (193)
358 2z4s_A Chromosomal replication 97.3 0.00011 3.9E-09 58.7 3.3 25 8-32 130-154 (440)
359 1upt_A ARL1, ADP-ribosylation 97.3 0.00013 4.3E-09 49.8 3.1 25 7-31 6-30 (171)
360 2y8e_A RAB-protein 6, GH09086P 97.3 0.00012 4E-09 50.2 3.0 22 10-31 16-37 (179)
361 2qmh_A HPR kinase/phosphorylas 97.3 0.00012 4E-09 52.6 2.9 27 6-32 32-58 (205)
362 2cxx_A Probable GTP-binding pr 97.3 9.9E-05 3.4E-09 51.3 2.6 22 10-31 3-24 (190)
363 1fzq_A ADP-ribosylation factor 97.3 8.6E-05 2.9E-09 51.7 2.2 24 8-31 16-39 (181)
364 1r8s_A ADP-ribosylation factor 97.3 0.00013 4.5E-09 49.4 3.1 21 11-31 3-23 (164)
365 2hxs_A RAB-26, RAS-related pro 97.3 0.00013 4.6E-09 50.0 3.2 22 10-31 8-29 (178)
366 3b1v_A Ferrous iron uptake tra 97.3 0.00011 3.8E-09 55.1 2.9 22 10-31 5-26 (272)
367 3zvl_A Bifunctional polynucleo 97.3 0.00014 4.8E-09 57.7 3.6 27 6-32 256-282 (416)
368 3con_A GTPase NRAS; structural 97.3 0.00013 4.6E-09 50.8 3.1 22 10-31 23-44 (190)
369 2g6b_A RAS-related protein RAB 97.3 0.00014 4.6E-09 50.1 3.1 22 10-31 12-33 (180)
370 2a9k_A RAS-related protein RAL 97.3 0.00014 4.7E-09 50.3 3.1 22 10-31 20-41 (187)
371 3be4_A Adenylate kinase; malar 97.3 0.00014 4.7E-09 52.4 3.2 26 7-32 4-29 (217)
372 3t1o_A Gliding protein MGLA; G 97.3 0.00015 5E-09 50.6 3.3 24 10-33 16-39 (198)
373 2r6a_A DNAB helicase, replicat 97.3 0.00015 5E-09 58.2 3.6 41 4-44 199-242 (454)
374 1z0f_A RAB14, member RAS oncog 97.3 0.00014 4.8E-09 49.8 3.1 22 10-31 17-38 (179)
375 3ihw_A Centg3; RAS, centaurin, 97.3 0.00015 5E-09 50.8 3.2 22 10-31 22-43 (184)
376 2efe_B Small GTP-binding prote 97.3 0.00015 5.1E-09 49.9 3.2 22 10-31 14-35 (181)
377 3hws_A ATP-dependent CLP prote 97.3 0.00015 5.1E-09 56.3 3.5 26 7-32 50-75 (363)
378 2bme_A RAB4A, RAS-related prot 97.3 0.00014 4.8E-09 50.4 3.0 22 10-31 12-33 (186)
379 2qag_A Septin-2, protein NEDD5 97.3 9.6E-05 3.3E-09 57.6 2.3 21 11-31 40-60 (361)
380 1nrj_B SR-beta, signal recogni 97.3 0.00015 5E-09 51.8 3.1 23 10-32 14-36 (218)
381 2xb4_A Adenylate kinase; ATP-b 97.3 0.00014 4.9E-09 52.6 3.1 23 10-32 2-24 (223)
382 3d3q_A TRNA delta(2)-isopenten 97.3 0.00013 4.5E-09 56.4 3.0 25 9-33 8-32 (340)
383 3a8t_A Adenylate isopentenyltr 97.3 0.00017 5.8E-09 55.8 3.5 27 7-33 39-65 (339)
384 2bov_A RAla, RAS-related prote 97.3 0.00016 5.4E-09 51.0 3.1 22 10-31 16-37 (206)
385 2f6r_A COA synthase, bifunctio 97.3 0.00013 4.6E-09 54.8 2.9 23 8-30 75-97 (281)
386 2v1u_A Cell division control p 97.3 0.00015 5E-09 56.0 3.2 27 6-32 42-68 (387)
387 3pxi_A Negative regulator of g 97.3 0.00011 3.7E-09 62.5 2.6 134 10-159 523-666 (758)
388 3cf2_A TER ATPase, transitiona 97.3 0.0001 3.5E-09 63.1 2.4 29 5-33 508-536 (806)
389 3tqf_A HPR(Ser) kinase; transf 97.3 0.00016 5.4E-09 50.8 3.0 26 6-31 14-39 (181)
390 2gf9_A RAS-related protein RAB 97.3 0.00016 5.6E-09 50.4 3.1 22 10-31 24-45 (189)
391 2fg5_A RAB-22B, RAS-related pr 97.3 0.00016 5.5E-09 50.7 3.0 22 10-31 25-46 (192)
392 1ak2_A Adenylate kinase isoenz 97.2 0.00019 6.6E-09 52.2 3.5 27 6-32 14-40 (233)
393 1e4v_A Adenylate kinase; trans 97.2 0.00016 5.4E-09 51.9 3.0 23 10-32 2-24 (214)
394 1vg8_A RAS-related protein RAB 97.2 0.00017 6E-09 50.8 3.2 22 10-31 10-31 (207)
395 3kkq_A RAS-related protein M-R 97.2 0.00018 6E-09 49.8 3.1 22 10-31 20-41 (183)
396 1m7b_A RND3/RHOE small GTP-bin 97.2 0.00016 5.6E-09 50.2 3.0 22 10-31 9-30 (184)
397 2z43_A DNA repair and recombin 97.2 0.00015 5.1E-09 55.6 3.0 27 5-31 104-130 (324)
398 3exa_A TRNA delta(2)-isopenten 97.2 0.0002 6.8E-09 54.9 3.6 26 8-33 3-28 (322)
399 1moz_A ARL1, ADP-ribosylation 97.2 7.8E-05 2.7E-09 51.6 1.3 24 7-30 17-40 (183)
400 1ltq_A Polynucleotide kinase; 97.2 0.00016 5.5E-09 54.4 3.1 23 9-31 3-25 (301)
401 2vf7_A UVRA2, excinuclease ABC 97.2 9.2E-05 3.1E-09 63.6 1.9 43 94-147 374-420 (842)
402 3tkl_A RAS-related protein RAB 97.2 0.00018 6.1E-09 50.2 3.1 22 10-31 18-39 (196)
403 2gf0_A GTP-binding protein DI- 97.2 0.00017 5.9E-09 50.4 3.0 22 10-31 10-31 (199)
404 3v9p_A DTMP kinase, thymidylat 97.2 0.00016 5.5E-09 52.9 2.9 28 5-32 22-49 (227)
405 1z06_A RAS-related protein RAB 97.2 0.00019 6.4E-09 50.1 3.2 22 10-31 22-43 (189)
406 3iby_A Ferrous iron transport 97.2 0.00016 5.5E-09 53.7 2.9 22 10-31 3-24 (256)
407 3t5d_A Septin-7; GTP-binding p 97.2 0.00013 4.6E-09 54.4 2.4 22 10-31 10-31 (274)
408 2xtp_A GTPase IMAP family memb 97.2 0.00017 5.9E-09 53.2 3.0 22 10-31 24-45 (260)
409 1mh1_A RAC1; GTP-binding, GTPa 97.2 0.0002 6.8E-09 49.5 3.1 22 10-31 7-28 (186)
410 3crm_A TRNA delta(2)-isopenten 97.2 0.00018 6.1E-09 55.3 3.0 25 9-33 6-30 (323)
411 3t5g_A GTP-binding protein RHE 97.2 0.00019 6.5E-09 49.5 3.0 22 10-31 8-29 (181)
412 1d2n_A N-ethylmaleimide-sensit 97.2 0.00016 5.6E-09 53.7 2.8 27 6-32 62-88 (272)
413 1zbd_A Rabphilin-3A; G protein 97.2 0.00019 6.6E-09 50.5 3.0 22 10-31 10-31 (203)
414 3dz8_A RAS-related protein RAB 97.2 0.00019 6.6E-09 50.2 3.0 22 10-31 25-46 (191)
415 2wsm_A Hydrogenase expression/ 97.2 0.00019 6.3E-09 51.4 2.9 24 9-32 31-54 (221)
416 1ksh_A ARF-like protein 2; sma 97.2 0.00017 6E-09 50.0 2.7 25 7-31 17-41 (186)
417 2a5j_A RAS-related protein RAB 97.2 0.00021 7.2E-09 50.0 3.1 22 10-31 23-44 (191)
418 3oes_A GTPase rhebl1; small GT 97.2 0.0002 6.9E-09 50.5 3.0 22 10-31 26-47 (201)
419 2ew1_A RAS-related protein RAB 97.2 0.0002 6.9E-09 50.9 3.0 22 10-31 28-49 (201)
420 3bwd_D RAC-like GTP-binding pr 97.2 0.00022 7.6E-09 49.1 3.1 23 9-31 9-31 (182)
421 1zd9_A ADP-ribosylation factor 97.2 0.00022 7.6E-09 49.8 3.1 22 10-31 24-45 (188)
422 2bcg_Y Protein YP2, GTP-bindin 97.2 0.00021 7.2E-09 50.5 3.0 22 10-31 10-31 (206)
423 1wf3_A GTP-binding protein; GT 97.2 0.00021 7.2E-09 54.3 3.2 22 10-31 9-30 (301)
424 3tmk_A Thymidylate kinase; pho 97.2 0.00034 1.2E-08 50.8 4.1 29 6-34 3-31 (216)
425 1x3s_A RAS-related protein RAB 97.2 0.00023 7.9E-09 49.6 3.1 22 10-31 17-38 (195)
426 2p5s_A RAS and EF-hand domain 97.2 0.00023 7.8E-09 50.2 3.1 23 9-31 29-51 (199)
427 2atv_A RERG, RAS-like estrogen 97.2 0.00023 8E-09 49.9 3.2 22 10-31 30-51 (196)
428 2h92_A Cytidylate kinase; ross 97.2 0.00025 8.6E-09 50.8 3.4 25 8-32 3-27 (219)
429 2cjw_A GTP-binding protein GEM 97.2 0.00023 8E-09 50.1 3.1 21 10-30 8-28 (192)
430 4b4t_M 26S protease regulatory 97.2 0.00026 8.8E-09 56.6 3.6 29 5-33 212-240 (434)
431 3a1s_A Iron(II) transport prot 97.2 0.00022 7.7E-09 52.9 3.1 22 10-31 7-28 (258)
432 3reg_A RHO-like small GTPase; 97.2 0.00024 8.2E-09 49.7 3.1 22 10-31 25-46 (194)
433 3cph_A RAS-related protein SEC 97.2 0.00024 8.1E-09 50.3 3.1 23 9-31 21-43 (213)
434 3cbq_A GTP-binding protein REM 97.2 0.00014 4.7E-09 51.4 1.8 21 10-30 25-45 (195)
435 4b4t_K 26S protease regulatory 97.1 0.00027 9.2E-09 56.4 3.6 29 5-33 203-231 (428)
436 1zj6_A ADP-ribosylation factor 97.1 0.00023 7.8E-09 49.6 2.9 24 8-31 16-39 (187)
437 3c5c_A RAS-like protein 12; GD 97.1 0.00026 8.7E-09 49.5 3.2 22 10-31 23-44 (187)
438 2o52_A RAS-related protein RAB 97.1 0.00021 7.3E-09 50.5 2.8 22 10-31 27-48 (200)
439 3d8b_A Fidgetin-like protein 1 97.1 0.00027 9.1E-09 54.9 3.5 28 6-33 115-142 (357)
440 3iev_A GTP-binding protein ERA 97.1 0.00022 7.6E-09 54.3 3.0 22 10-31 12-33 (308)
441 3i8s_A Ferrous iron transport 97.1 0.00024 8.2E-09 53.2 3.0 22 10-31 5-26 (274)
442 2qu8_A Putative nucleolar GTP- 97.1 0.00022 7.4E-09 51.5 2.7 23 9-31 30-52 (228)
443 3llu_A RAS-related GTP-binding 97.1 0.00026 8.8E-09 49.8 3.0 23 10-32 22-44 (196)
444 2zts_A Putative uncharacterize 97.1 0.00026 9.1E-09 51.4 3.2 25 5-29 27-51 (251)
445 3sr0_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 51.0 3.0 23 10-32 2-24 (206)
446 4dhe_A Probable GTP-binding pr 97.1 0.00012 4E-09 52.5 1.2 23 9-31 30-52 (223)
447 2il1_A RAB12; G-protein, GDP, 97.1 0.0002 6.7E-09 50.3 2.4 22 10-31 28-49 (192)
448 2h17_A ADP-ribosylation factor 97.1 0.00021 7.1E-09 49.6 2.4 22 10-31 23-44 (181)
449 2iwr_A Centaurin gamma 1; ANK 97.1 0.0002 6.8E-09 49.3 2.3 22 10-31 9-30 (178)
450 1um8_A ATP-dependent CLP prote 97.1 0.00041 1.4E-08 54.0 4.4 27 7-33 71-97 (376)
451 3bh0_A DNAB-like replicative h 97.1 0.0003 1E-08 53.7 3.5 27 5-31 65-91 (315)
452 4edh_A DTMP kinase, thymidylat 97.1 0.00028 9.6E-09 51.0 3.2 28 6-33 4-31 (213)
453 2fv8_A H6, RHO-related GTP-bin 97.1 0.00027 9.1E-09 50.2 3.0 22 10-31 27-48 (207)
454 4bas_A ADP-ribosylation factor 97.1 0.00021 7.3E-09 50.0 2.5 23 9-31 18-40 (199)
455 1gwn_A RHO-related GTP-binding 97.1 0.00026 9E-09 50.4 3.0 22 10-31 30-51 (205)
456 1ko7_A HPR kinase/phosphatase; 97.1 0.00026 8.9E-09 54.2 3.0 25 7-31 143-167 (314)
457 2ygr_A Uvrabc system protein A 97.1 0.00014 4.9E-09 63.3 1.7 26 1-26 39-64 (993)
458 2dby_A GTP-binding protein; GD 97.1 0.00026 9E-09 55.4 3.1 22 10-31 3-24 (368)
459 2h57_A ADP-ribosylation factor 97.1 0.00017 5.8E-09 50.4 1.8 22 10-31 23-44 (190)
460 2f7s_A C25KG, RAS-related prot 97.1 0.00027 9.2E-09 50.4 2.9 22 10-31 27-48 (217)
461 2r6f_A Excinuclease ABC subuni 97.1 0.00015 5E-09 63.0 1.7 26 1-26 37-62 (972)
462 2e87_A Hypothetical protein PH 97.1 0.00024 8.1E-09 55.2 2.7 26 7-32 166-191 (357)
463 2fh5_B SR-beta, signal recogni 97.1 0.0003 1E-08 50.0 3.1 23 9-31 8-30 (214)
464 3pih_A Uvrabc system protein A 97.1 2.4E-05 8.1E-10 67.8 -3.3 46 94-150 459-508 (916)
465 2q3h_A RAS homolog gene family 97.1 0.00029 9.8E-09 49.6 2.9 23 9-31 21-43 (201)
466 1qvr_A CLPB protein; coiled co 97.1 0.00068 2.3E-08 58.4 5.7 117 9-132 589-710 (854)
467 2qgz_A Helicase loader, putati 97.1 0.00034 1.1E-08 53.3 3.4 25 8-32 152-176 (308)
468 1jwy_B Dynamin A GTPase domain 97.1 0.00028 9.5E-09 53.4 2.9 22 10-31 26-47 (315)
469 1g41_A Heat shock protein HSLU 97.1 0.00068 2.3E-08 54.3 5.3 33 8-40 50-82 (444)
470 3lv8_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 51.4 3.3 26 7-32 26-51 (236)
471 2j1l_A RHO-related GTP-binding 97.1 0.00029 1E-08 50.3 2.8 22 10-31 36-57 (214)
472 2i1q_A DNA repair and recombin 97.1 0.00027 9.2E-09 54.0 2.7 26 5-30 95-120 (322)
473 2qby_B CDC6 homolog 3, cell di 97.1 0.00035 1.2E-08 54.1 3.4 25 8-32 45-69 (384)
474 3foz_A TRNA delta(2)-isopenten 97.0 0.00035 1.2E-08 53.4 3.3 25 8-32 10-34 (316)
475 2atx_A Small GTP binding prote 97.0 0.00035 1.2E-08 48.8 3.0 22 10-31 20-41 (194)
476 2hf9_A Probable hydrogenase ni 97.0 0.00032 1.1E-08 50.4 2.9 23 9-31 39-61 (226)
477 2gco_A H9, RHO-related GTP-bin 97.0 0.00034 1.2E-08 49.4 3.0 22 10-31 27-48 (201)
478 2fu5_C RAS-related protein RAB 97.0 0.00019 6.4E-09 49.6 1.6 22 10-31 10-31 (183)
479 2ocp_A DGK, deoxyguanosine kin 97.0 0.00034 1.2E-08 51.1 3.0 27 7-33 1-27 (241)
480 3def_A T7I23.11 protein; chlor 97.0 0.00035 1.2E-08 51.8 3.0 22 10-31 38-59 (262)
481 1tue_A Replication protein E1; 97.0 0.00035 1.2E-08 50.4 2.8 120 7-153 57-177 (212)
482 4tmk_A Protein (thymidylate ki 97.0 0.00043 1.5E-08 50.1 3.3 26 7-32 2-27 (213)
483 2b6h_A ADP-ribosylation factor 97.0 0.00027 9.4E-09 49.6 2.3 25 7-31 28-52 (192)
484 1h65_A Chloroplast outer envel 97.0 0.00034 1.2E-08 52.0 2.9 22 10-31 41-62 (270)
485 1a5t_A Delta prime, HOLB; zinc 97.0 0.0039 1.3E-07 47.8 8.9 22 10-31 26-47 (334)
486 2aka_B Dynamin-1; fusion prote 97.0 0.00034 1.1E-08 52.5 2.7 22 10-31 28-49 (299)
487 1jal_A YCHF protein; nucleotid 97.0 0.00043 1.5E-08 54.0 3.3 24 8-31 2-25 (363)
488 2hup_A RAS-related protein RAB 97.0 0.00042 1.4E-08 49.0 3.0 22 10-31 31-52 (201)
489 1p5z_B DCK, deoxycytidine kina 97.0 0.00024 8.1E-09 52.7 1.7 28 6-33 22-49 (263)
490 3cpj_B GTP-binding protein YPT 97.0 0.00046 1.6E-08 49.5 3.2 22 10-31 15-36 (223)
491 3ld9_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 50.2 3.3 27 6-32 19-45 (223)
492 1sky_E F1-ATPase, F1-ATP synth 97.0 0.00046 1.6E-08 55.6 3.3 29 4-32 147-175 (473)
493 2v3c_C SRP54, signal recogniti 96.9 0.00049 1.7E-08 54.9 3.4 24 9-32 100-123 (432)
494 2g3y_A GTP-binding protein GEM 96.9 0.00046 1.6E-08 49.7 2.9 22 10-31 39-60 (211)
495 4gzl_A RAS-related C3 botulinu 96.9 0.00049 1.7E-08 48.8 3.1 23 9-31 31-53 (204)
496 2orw_A Thymidine kinase; TMTK, 96.9 0.00053 1.8E-08 48.3 3.2 22 7-28 2-23 (184)
497 3q3j_B RHO-related GTP-binding 96.9 0.00053 1.8E-08 49.1 3.1 22 10-31 29-50 (214)
498 1u94_A RECA protein, recombina 96.9 0.0005 1.7E-08 53.5 3.1 27 5-31 60-86 (356)
499 2j0v_A RAC-like GTP-binding pr 96.9 0.00054 1.8E-08 48.6 3.0 22 10-31 11-32 (212)
500 2c9o_A RUVB-like 1; hexameric 96.9 0.00061 2.1E-08 54.6 3.4 27 7-33 62-88 (456)
No 1
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=2.3e-27 Score=179.22 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=97.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---------cCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---------KAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 69 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++.........+ .+...... .....+
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~tv~e~l~~ 108 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR-TRAVMRQYSELAFPFSVSEVIQM 108 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHH-HEEEECSCCCCCSCCBHHHHHHG
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhh-eEEEEecCCccCCCCCHHHHHHh
Confidence 5899999999999999999999999999999766 99999999887654333222 11110000 000000
Q ss_pred c-----C-CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeec------ceEEEEEecCCCC
Q psy2657 70 G-----P-PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIH------NIMFVSAMNPTSG 135 (163)
Q Consensus 70 ~-----~-~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~------~~~~i~~deP~~g 135 (163)
+ . ...+++...++.+++.... ++++.+| |+|| |||+++ +++. +|+++++||||+|
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---~QRv~iAraL~~~~~~~~~p~lLllDEPts~ 177 (266)
T 4g1u_C 109 GRAPYGGSQDRQALQQVMAQTDCLALA---QRDYRVL-----SGGE---QQRVQLARVLAQLWQPQPTPRWLFLDEPTSA 177 (266)
T ss_dssp GGTTSCSTTHHHHHHHHHHHTTCSTTT---TSBGGGC-----CHHH---HHHHHHHHHHHHTCCSSCCCEEEEECCCCSS
T ss_pred hhhhcCcHHHHHHHHHHHHHcCChhHh---cCCcccC-----CHHH---HHHHHHHHHHhcccccCCCCCEEEEeCcccc
Confidence 0 0 1112344567778876544 7788899 9999 999999 8888 9999999999999
Q ss_pred cccCCchhhhceeEE
Q psy2657 136 SFTIEPRLQRHFYVF 150 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~ 150 (163)
||+..+..+..+
T Consensus 178 ---LD~~~~~~i~~~ 189 (266)
T 4g1u_C 178 ---LDLYHQQHTLRL 189 (266)
T ss_dssp ---CCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHH
Confidence 998877665443
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.91 E-value=6.9e-28 Score=188.59 Aligned_cols=139 Identities=15% Similarity=0.218 Sum_probs=100.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHH--HHHHhcccccc---CC-ce----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEML--QKVLEKPLEKK---AG-RN---- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~-~~---- 68 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++......... +..+...++.. .. .+
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env 126 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNV 126 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHH
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHH
Confidence 5899999999999999999999999999999876 9999999998766543321 11111000000 00 00
Q ss_pred ------ecCC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 69 ------FGPP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 69 ------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.+.. ..+++...++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++||||++
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~---~~~~~~L-----SGGq---kQRVaIArAL~~~P~lLLlDEPTs~-- 193 (366)
T 3tui_C 127 ALPLELDNTPKDEVKRRVTELLSLVGLGDKH---DSYPSNL-----SGGQ---KQRVAIARALASNPKVLLCDQATSA-- 193 (366)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT---TCCTTTS-----CHHH---HHHHHHHHHTTTCCSEEEEESTTTT--
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEECCCcc--
Confidence 0000 112344567778886554 7889999 9999 999999 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 194 -LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 194 -LDPATTRSILELLKD 208 (366)
T ss_dssp -SCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999887776544433
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.90 E-value=5.4e-27 Score=174.34 Aligned_cols=139 Identities=16% Similarity=0.209 Sum_probs=98.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHH---HHHHhccccc---cCC-ce---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEML---QKVLEKPLEK---KAG-RN--- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~-~~--- 68 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++......... ...+...... ... .+
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en 103 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN 103 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence 5899999999999999999999999999999876 9999999988765543321 1111110000 000 00
Q ss_pred --ec-------CC----CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 69 --FG-------PP----GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 69 --~~-------~~----~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
++ .. ..+++...++.+++.+. ..++++.+| |+|| |||+++ +++.+|+++++||||
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~L-----SgGq---~QRv~iAral~~~p~llllDEPt 173 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEER--FANHKPNQL-----SGGQ---QQRVAIARALANNPPIILADQPT 173 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG--GTTCCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh--hhhCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCc
Confidence 00 00 01223456677777542 126779999 9999 999998 999999999999999
Q ss_pred CCcccCCchhhhceeEEEE
Q psy2657 134 SGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 134 ~g~~~l~~~~~~~~~~~~l 152 (163)
++ ||+.....+..+..
T Consensus 174 s~---LD~~~~~~i~~~l~ 189 (235)
T 3tif_A 174 WA---LDSKTGEKIMQLLK 189 (235)
T ss_dssp TT---SCHHHHHHHHHHHH
T ss_pred cc---CCHHHHHHHHHHHH
Confidence 99 99888776654443
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.90 E-value=2.2e-27 Score=180.01 Aligned_cols=137 Identities=15% Similarity=0.294 Sum_probs=96.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC-HHHHHHHHhccccc-----cCCce----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS-SEMLQKVLEKPLEK-----KAGRN---- 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~---- 68 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++..... .......+....+. ....+
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l 106 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDV 106 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHH
Confidence 5899999999999999999999999999999876 999999998742110 11111111100000 00000
Q ss_pred -ec-----CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 69 -FG-----PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 69 -~~-----~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
++ .. ..+++...++.+++.... ++++.+| |+|| |||+++ +++.+|+++++||||+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~L-----SgGq---kQRv~iAraL~~~P~lLlLDEPts~-- 173 (275)
T 3gfo_A 107 SFGAVNMKLPEDEIRKRVDNALKRTGIEHLK---DKPTHCL-----SFGQ---KKRVAIAGVLVMEPKVLILDEPTAG-- 173 (275)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT---TSBGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEECTTTT--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhh---cCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEECcccc--
Confidence 00 00 012344567788886544 7889999 9999 999999 99999999999999999
Q ss_pred cCCchhhhceeEEE
Q psy2657 138 TIEPRLQRHFYVFA 151 (163)
Q Consensus 138 ~l~~~~~~~~~~~~ 151 (163)
||+..++.+..++
T Consensus 174 -LD~~~~~~i~~~l 186 (275)
T 3gfo_A 174 -LDPMGVSEIMKLL 186 (275)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 9998876654443
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=5.3e-28 Score=189.00 Aligned_cols=133 Identities=15% Similarity=0.221 Sum_probs=95.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC----CCHH----------------HHHHHHh
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY----TSSE----------------MLQKVLE 58 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~----~~~~----------------~~~~~~~ 58 (163)
+||++++||+++|+||||||||||+|+|+|..+| |+|.++|.++... .... .....+.
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~ 102 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIA 102 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHH
Confidence 5899999999999999999999999999999776 9999999887321 1100 0011111
Q ss_pred ccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 59 KPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..+... ........+++...++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++|||+++
T Consensus 103 ~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~---~r~~~~L-----SGGq---~QRValArAL~~~P~lLLLDEPts~- 168 (359)
T 3fvq_A 103 YGLGNG--KGRTAQERQRIEAMLELTGISELA---GRYPHEL-----SGGQ---QQRAALARALAPDPELILLDEPFSA- 168 (359)
T ss_dssp TTSTTS--SCCSHHHHHHHHHHHHHHTCGGGT---TSCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESTTTT-
T ss_pred HHHHHc--CCChHHHHHHHHHHHHHcCCchHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc-
Confidence 000000 000000112344567778886544 8889999 9999 999999 99999999999999999
Q ss_pred ccCCchhhhceeE
Q psy2657 137 FTIEPRLQRHFYV 149 (163)
Q Consensus 137 ~~l~~~~~~~~~~ 149 (163)
||+..+..+..
T Consensus 169 --LD~~~r~~l~~ 179 (359)
T 3fvq_A 169 --LDEQLRRQIRE 179 (359)
T ss_dssp --SCHHHHHHHHH
T ss_pred --CCHHHHHHHHH
Confidence 99988776654
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=6.5e-28 Score=189.71 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=97.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH----------------HHHHHhcccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM----------------LQKVLEKPLE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 62 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++...+.... ....+...+.
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999876 999999988765432210 0001100000
Q ss_pred ccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 63 KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
.. ........+++..+++.+++.... +++|.+| |+|| |||+++ +++.+|+++++|||+++ ||
T Consensus 102 ~~--~~~~~~~~~~v~~~l~~~~L~~~~---~r~p~~L-----SGGq---rQRVaiArAL~~~P~lLLLDEPts~---LD 165 (381)
T 3rlf_A 102 LA--GAKKEVINQRVNQVAEVLQLAHLL---DRKPKAL-----SGGQ---RQRVAIGRTLVAEPSVFLLDEPLSN---LD 165 (381)
T ss_dssp HT--TCCHHHHHHHHHHHHHHTTCGGGT---TCCGGGS-----CHHH---HHHHHHHHHHHHCCSEEEEESTTTT---SC
T ss_pred Hc--CCCHHHHHHHHHHHHHHcCCchhh---cCChhHC-----CHHH---HHHHHHHHHHHcCCCEEEEECCCcC---CC
Confidence 00 000001122345677888886544 8889999 9999 999999 99999999999999999 99
Q ss_pred chhhhceeEEE
Q psy2657 141 PRLQRHFYVFA 151 (163)
Q Consensus 141 ~~~~~~~~~~~ 151 (163)
+..+..+..++
T Consensus 166 ~~~~~~l~~~l 176 (381)
T 3rlf_A 166 AALRVQMRIEI 176 (381)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88776654433
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.90 E-value=2.7e-26 Score=169.46 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=97.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH--HH-HHHhccccc---cC------C
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM--LQ-KVLEKPLEK---KA------G 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~--~~-~~~~~~~~~---~~------~ 66 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++........ .. ..+...... .. .
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 102 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALEN 102 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHH
Confidence 5899999999999999999999999999999876 999999988765433221 11 111110000 00 0
Q ss_pred cee-----cC---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 67 RNF-----GP---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 67 ~~~-----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
..+ +. ...+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++||||++
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---~qrv~laral~~~p~lllLDEPt~~- 170 (224)
T 2pcj_A 103 VIVPMLKMGKPKKEAKERGEYLLSELGLGDKL---SRKPYEL-----SGGE---QQRVAIARALANEPILLFADEPTGN- 170 (224)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT---TCCGGGS-----CHHH---HHHHHHHHHTTTCCSEEEEESTTTT-
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh---hCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCCCC-
Confidence 000 00 0012344567778886544 7889999 9999 999998 99999999999999999
Q ss_pred ccCCchhhhceeEEE
Q psy2657 137 FTIEPRLQRHFYVFA 151 (163)
Q Consensus 137 ~~l~~~~~~~~~~~~ 151 (163)
||+..+..+..++
T Consensus 171 --LD~~~~~~~~~~l 183 (224)
T 2pcj_A 171 --LDSANTKRVMDIF 183 (224)
T ss_dssp --CCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH
Confidence 9998776654433
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.90 E-value=1e-26 Score=174.93 Aligned_cols=136 Identities=14% Similarity=0.221 Sum_probs=96.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhc---------cccccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEK---------PLEKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 69 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++.........+..+.. .+.......+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 105 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI 105 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence 5899999999999999999999999999999876 9999999887644322222211100 0000000000
Q ss_pred -------c-----------CCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEE
Q psy2657 70 -------G-----------PPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMF 126 (163)
Q Consensus 70 -------~-----------~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~ 126 (163)
+ ... .+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---kQrv~iAraL~~~p~l 174 (257)
T 1g6h_A 106 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY---DRKAGEL-----SGGQ---MKLVEIGRALMTNPKM 174 (257)
T ss_dssp GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT---TSBGGGS-----CHHH---HHHHHHHHHHHTCCSE
T ss_pred HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh---CCCchhC-----CHHH---HHHHHHHHHHHcCCCE
Confidence 0 000 12344567778876543 7789999 9999 999998 99999999
Q ss_pred EEEecCCCCcccCCchhhhceeEE
Q psy2657 127 VSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 127 i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
+++||||+| ||+..+..+..+
T Consensus 175 llLDEPts~---LD~~~~~~l~~~ 195 (257)
T 1g6h_A 175 IVMDEPIAG---VAPGLAHDIFNH 195 (257)
T ss_dssp EEEESTTTT---CCHHHHHHHHHH
T ss_pred EEEeCCccC---CCHHHHHHHHHH
Confidence 999999999 998876655433
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=3.7e-26 Score=178.88 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=97.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH----------------HHHHHHhcccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE----------------MLQKVLEKPLE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 62 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++....... .....+...+.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLR 101 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999876 99999998875433211 00111110000
Q ss_pred ccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 63 KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
. .........+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++|||+++ ||
T Consensus 102 ~--~~~~~~~~~~~v~~~l~~~~L~~~~---~r~~~~L-----SgGq---~QRvalArAL~~~P~lLLLDEP~s~---LD 165 (359)
T 2yyz_A 102 A--RRISKDEVEKRVVEIARKLLIDNLL---DRKPTQL-----SGGQ---QQRVALARALVKQPKVLLFDEPLSN---LD 165 (359)
T ss_dssp S--SCSHHHHTTHHHHHHHHHTTCGGGT---TSCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESTTTT---SC
T ss_pred h--cCCCHHHHHHHHHHHHHHcCCchHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECCccc---CC
Confidence 0 0000011123455677888886544 7889999 9999 999999 99999999999999999 99
Q ss_pred chhhhceeEEE
Q psy2657 141 PRLQRHFYVFA 151 (163)
Q Consensus 141 ~~~~~~~~~~~ 151 (163)
+..+..+..++
T Consensus 166 ~~~r~~l~~~l 176 (359)
T 2yyz_A 166 ANLRMIMRAEI 176 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876654433
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=2.7e-26 Score=173.11 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=97.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC-CCCHHHHHHHHhccccc---cC------Cce
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF-YTSSEMLQKVLEKPLEK---KA------GRN 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~------~~~ 68 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++.. ..........+....+. .. ...
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~ 122 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT 122 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHH
Confidence 5899999999999999999999999999999876 999999988751 11222222221110000 00 000
Q ss_pred ec------CC---CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 69 FG------PP---GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 69 ~~------~~---~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
++ .. ..+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++||||++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~---~~~~~~L-----SgGq---kQRv~lAraL~~~p~lllLDEPts~-- 189 (263)
T 2olj_A 123 LAPMKVRKWPREKAEAKAMELLDKVGLKDKA---HAYPDSL-----SGGQ---AQRVAIARALAMEPKIMLFDEPTSA-- 189 (263)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT---TSCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESTTTT--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHh---cCChhhC-----CHHH---HHHHHHHHHHHCCCCEEEEeCCccc--
Confidence 10 00 012234567777876543 7889999 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEEEc
Q psy2657 138 TIEPRLQRHFYVFALR 153 (163)
Q Consensus 138 ~l~~~~~~~~~~~~l~ 153 (163)
||+..++.+..++.+
T Consensus 190 -LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 190 -LDPEMVGEVLSVMKQ 204 (263)
T ss_dssp -SCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHH
Confidence 999888776554433
No 11
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.89 E-value=6.6e-26 Score=178.17 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=95.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHH-----HHHH-HhccccccCCceecC-
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEM-----LQKV-LEKPLEKKAGRNFGP- 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~- 71 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++........ .|.. +...+.......|+.
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 109 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLK 109 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999876 999999988754332110 0000 000011000000110
Q ss_pred ----CC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 72 ----PG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 72 ----~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
.. .+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++|||+++ ||+.
T Consensus 110 ~~~~~~~~~~~~v~~~l~~~~L~~~~---~r~~~~L-----SGGq---~QRvalArAL~~~P~lLLLDEP~s~---LD~~ 175 (372)
T 1v43_A 110 IKKFPKDEIDKRVRWAAELLQIEELL---NRYPAQL-----SGGQ---RQRVAVARAIVVEPDVLLMDEPLSN---LDAK 175 (372)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGT---TSCTTTC-----CSSC---HHHHHHHHHHTTCCSEEEEESTTTT---SCHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHh---cCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEcCCCcc---CCHH
Confidence 00 12344567788886544 7889999 9999 999999 99999999999999999 9988
Q ss_pred hhhceeEE
Q psy2657 143 LQRHFYVF 150 (163)
Q Consensus 143 ~~~~~~~~ 150 (163)
.+..+..+
T Consensus 176 ~r~~l~~~ 183 (372)
T 1v43_A 176 LRVAMRAE 183 (372)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665443
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=3e-26 Score=179.03 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=96.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH----------------HHHHHHhcccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE----------------MLQKVLEKPLE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 62 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++....... .....+...+.
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLR 113 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999876 99999998875432110 00000000000
Q ss_pred ccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 63 KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
.. ........+++..+++.+++.+.. ++++.+| |+|| +||+++ +++.+|+++++|||+++ ||
T Consensus 114 ~~--~~~~~~~~~~v~~~l~~~gL~~~~---~r~~~~L-----SGGq---~QRvalArAL~~~P~lLLLDEP~s~---LD 177 (355)
T 1z47_A 114 EK--RVPKDEMDARVRELLRFMRLESYA---NRFPHEL-----SGGQ---QQRVALARALAPRPQVLLFDEPFAA---ID 177 (355)
T ss_dssp HT--TCCHHHHHHHHHHHHHHTTCGGGT---TSCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESTTCC---SS
T ss_pred Hc--CCCHHHHHHHHHHHHHHcCChhHh---cCCcccC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---CC
Confidence 00 000000112345677888886544 7889999 9999 999999 99999999999999999 99
Q ss_pred chhhhceeEEE
Q psy2657 141 PRLQRHFYVFA 151 (163)
Q Consensus 141 ~~~~~~~~~~~ 151 (163)
+..+..+..++
T Consensus 178 ~~~r~~l~~~l 188 (355)
T 1z47_A 178 TQIRRELRTFV 188 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876665443
No 13
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=1.3e-25 Score=175.21 Aligned_cols=134 Identities=16% Similarity=0.231 Sum_probs=97.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc---------cccCCcee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL---------EKKAGRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 69 (163)
+||++++||+++|+||||||||||+|+|+|..+| |+|.++|.++...... +..+.... .......|
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~---~r~ig~v~Q~~~l~~~ltv~enl~~ 95 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE---KHDIAFVYQNYSLFPHMNVKKNLEF 95 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH---HHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh---hCcEEEEecCcccCCCCCHHHHHHH
Confidence 5899999999999999999999999999999876 9999999887543221 11110000 00000001
Q ss_pred -----cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 70 -----GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 70 -----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
+....+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++|||+++ ||+.
T Consensus 96 ~~~~~~~~~~~~v~~~l~~~~L~~~~---~~~~~~L-----SgGq---~QRvalAraL~~~P~lLLLDEP~s~---LD~~ 161 (348)
T 3d31_A 96 GMRMKKIKDPKRVLDTARDLKIEHLL---DRNPLTL-----SGGE---QQRVALARALVTNPKILLLDEPLSA---LDPR 161 (348)
T ss_dssp HHHHHCCCCHHHHHHHHHHTTCTTTT---TSCGGGS-----CHHH---HHHHHHHHHTTSCCSEEEEESSSTT---SCHH
T ss_pred HHHHcCCCHHHHHHHHHHHcCCchHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECcccc---CCHH
Confidence 001113445667788886554 8889999 9999 999999 99999999999999999 9988
Q ss_pred hhhceeEEE
Q psy2657 143 LQRHFYVFA 151 (163)
Q Consensus 143 ~~~~~~~~~ 151 (163)
.+..+..++
T Consensus 162 ~~~~l~~~l 170 (348)
T 3d31_A 162 TQENAREML 170 (348)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 876665443
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=4.4e-26 Score=178.25 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=96.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC-----CCCHH----------------HHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF-----YTSSE----------------MLQKVL 57 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~-----~~~~~----------------~~~~~~ 57 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++.. ..... .....+
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 103 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI 103 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHH
Confidence 5899999999999999999999999999999776 999999988754 11110 000111
Q ss_pred hccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 58 EKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
...+... ........+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++|||+++
T Consensus 104 ~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~---~~~~~~L-----SGGq---~QRvalAraL~~~P~lLLLDEP~s~ 170 (353)
T 1oxx_K 104 AFPLTNM--KMSKEEIRKRVEEVAKILDIHHVL---NHFPREL-----SGAQ---QQRVALARALVKDPSLLLLDEPFSN 170 (353)
T ss_dssp HGGGTTS--SCCHHHHHHHHHHHHHHTTCGGGT---TSCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHcCCchHh---cCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEECCccc
Confidence 0000000 000000012344677788886544 7889999 9999 999999 99999999999999999
Q ss_pred cccCCchhhhceeEEE
Q psy2657 136 SFTIEPRLQRHFYVFA 151 (163)
Q Consensus 136 ~~~l~~~~~~~~~~~~ 151 (163)
||+..+..+..++
T Consensus 171 ---LD~~~r~~l~~~l 183 (353)
T 1oxx_K 171 ---LDARMRDSARALV 183 (353)
T ss_dssp ---SCGGGHHHHHHHH
T ss_pred ---CCHHHHHHHHHHH
Confidence 9998876665433
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.88 E-value=4.8e-26 Score=178.42 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=96.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH----------------HHHHHHhcccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE----------------MLQKVLEKPLE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 62 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++....... .....+...+.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLE 101 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999776 99999998875433211 00000000000
Q ss_pred ccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCC
Q psy2657 63 KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIE 140 (163)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~ 140 (163)
.. ........+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++|||+++ ||
T Consensus 102 ~~--~~~~~~~~~~v~~~l~~~~L~~~~---~r~~~~L-----SGGq---~QRvalArAL~~~P~lLLLDEP~s~---LD 165 (362)
T 2it1_A 102 LR--KAPREEIDKKVREVAKMLHIDKLL---NRYPWQL-----SGGQ---QQRVAIARALVKEPEVLLLDEPLSN---LD 165 (362)
T ss_dssp HT--TCCHHHHHHHHHHHHHHTTCTTCT---TCCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESGGGG---SC
T ss_pred hc--CCCHHHHHHHHHHHHHHcCCchHh---hCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECcccc---CC
Confidence 00 000000012344677888886554 8889999 9999 999999 99999999999999999 99
Q ss_pred chhhhceeEEE
Q psy2657 141 PRLQRHFYVFA 151 (163)
Q Consensus 141 ~~~~~~~~~~~ 151 (163)
+..+..+..++
T Consensus 166 ~~~r~~l~~~l 176 (362)
T 2it1_A 166 ALLRLEVRAEL 176 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876664433
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.88 E-value=3.6e-26 Score=172.40 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=96.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC----------CCCHH--HHHHHHhccccc---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF----------YTSSE--MLQKVLEKPLEK--- 63 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~----------~~~~~--~~~~~~~~~~~~--- 63 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++.. ..... .....+......
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence 5899999999999999999999999999999876 999999988751 11111 111111110000
Q ss_pred c------CCceecC----CC-----CceEEEEEecCCCCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceE
Q psy2657 64 K------AGRNFGP----PG-----NKTMIYFVDDMNMPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM 125 (163)
Q Consensus 64 ~------~~~~~~~----~~-----~~~~~~~l~~~~l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~ 125 (163)
. ....++. .. .+++..+++.+++.+. . ++++.+| |+|| +||+++ +++.+|+
T Consensus 105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---~~~~~~L-----SgGq---~qRv~lAraL~~~p~ 173 (262)
T 1b0u_A 105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ---GKYPVHL-----SGGQ---QQRVSIARALAMEPD 173 (262)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH---TSCGGGS-----CHHH---HHHHHHHHHHHTCCS
T ss_pred CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhh---cCCcccC-----CHHH---HHHHHHHHHHhcCCC
Confidence 0 0000100 00 1223456777888654 3 6778999 9999 999998 9999999
Q ss_pred EEEEecCCCCcccCCchhhhceeEEEE
Q psy2657 126 FVSAMNPTSGSFTIEPRLQRHFYVFAL 152 (163)
Q Consensus 126 ~i~~deP~~g~~~l~~~~~~~~~~~~l 152 (163)
++++||||+| ||+..++.+..++.
T Consensus 174 lllLDEPts~---LD~~~~~~~~~~l~ 197 (262)
T 1b0u_A 174 VLLFDEPTSA---LDPELVGEVLRIMQ 197 (262)
T ss_dssp EEEEESTTTT---SCHHHHHHHHHHHH
T ss_pred EEEEeCCCcc---CCHHHHHHHHHHHH
Confidence 9999999999 99988776655443
No 17
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.88 E-value=8.7e-26 Score=170.65 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=92.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccc----------cccC---
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPL----------EKKA--- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--- 65 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++... .....+.... ....
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY----EIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH----HHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH----HhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 5799999999999999999999999999999876 9999998776321 1110000000 0000
Q ss_pred ---CceecCC-CCceEEEEEecCCCC--CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 66 ---GRNFGPP-GNKTMIYFVDDMNMP--EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 66 ---~~~~~~~-~~~~~~~~l~~~~l~--~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
....... ..+++..+++.+++. +.. ++++.+| |+|| |||+++ +++.+|+++++||||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~---~~~~~~L-----SgGq---~qRv~lAraL~~~p~lllLDEPts~-- 168 (266)
T 2yz2_A 102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK---DRVPFFL-----SGGE---KRRVAIASVIVHEPDILILDEPLVG-- 168 (266)
T ss_dssp HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT---TCCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEESTTTT--
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcCcCCcccc---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEcCcccc--
Confidence 0000011 112344567778886 443 7788899 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEE
Q psy2657 138 TIEPRLQRHFYVF 150 (163)
Q Consensus 138 ~l~~~~~~~~~~~ 150 (163)
||+..+..+..+
T Consensus 169 -LD~~~~~~l~~~ 180 (266)
T 2yz2_A 169 -LDREGKTDLLRI 180 (266)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 998877665433
No 18
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.88 E-value=1.4e-25 Score=164.53 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=91.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec---------CCCC----HHHHHHHHhccccccC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN---------FYTS----SEMLQKVLEKPLEKKA 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~ 65 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++. .+.. .......+...... .
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~-~ 106 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-Y 106 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHH-T
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh-c
Confidence 5799999999999999999999999999999776 99999987653 0000 00001111000000 0
Q ss_pred CceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
+ . ....+++..+++.+++.. + ++++.+| |+|| |||+++ +++.+|+++++||||++ ||+..
T Consensus 107 ~-~--~~~~~~~~~~l~~~gl~~---~-~~~~~~L-----SgGq---kqrv~laraL~~~p~lllLDEPts~---LD~~~ 168 (214)
T 1sgw_A 107 G-V--KVNKNEIMDALESVEVLD---L-KKKLGEL-----SQGT---IRRVQLASTLLVNAEIYVLDDPVVA---IDEDS 168 (214)
T ss_dssp T-C--CCCHHHHHHHHHHTTCCC---T-TSBGGGS-----CHHH---HHHHHHHHHTTSCCSEEEEESTTTT---SCTTT
T ss_pred C-C--chHHHHHHHHHHHcCCCc---C-CCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEECCCcC---CCHHH
Confidence 0 0 111223445667777753 2 5678899 9999 999998 99999999999999999 99887
Q ss_pred hhceeEE
Q psy2657 144 QRHFYVF 150 (163)
Q Consensus 144 ~~~~~~~ 150 (163)
+..+..+
T Consensus 169 ~~~l~~~ 175 (214)
T 1sgw_A 169 KHKVLKS 175 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=3.9e-26 Score=170.22 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=93.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cC------Ccee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KA------GRNF 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~ 69 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++.........+..+...... .. ...+
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 104 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMM 104 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHG
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHH
Confidence 5799999999999999999999999999999776 99999998876443222222111100000 00 0000
Q ss_pred cC----CCC---ceEEEEEecCC-CCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 70 GP----PGN---KTMIYFVDDMN-MPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 70 ~~----~~~---~~~~~~l~~~~-l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
+. ... +.+..+++.++ +.+.. ++++.+| |+|| |||+++ +++.+|+++++||||++ |
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~---~~~~~~L-----SgGq---~qrv~lAraL~~~p~lllLDEPts~---L 170 (240)
T 1ji0_A 105 GAYNRKDKEGIKRDLEWIFSLFPRLKERL---KQLGGTL-----SGGE---QQMLAIGRALMSRPKLLMMDEPSLG---L 170 (240)
T ss_dssp GGTTCCCSSHHHHHHHHHHHHCHHHHTTT---TSBSSSS-----CHHH---HHHHHHHHHHTTCCSEEEEECTTTT---C
T ss_pred hhhcCCCHHHHHHHHHHHHHHcccHhhHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEcCCccc---C
Confidence 00 001 11223445553 54332 6667788 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEE
Q psy2657 140 EPRLQRHFYVFAL 152 (163)
Q Consensus 140 ~~~~~~~~~~~~l 152 (163)
|+..++.+..++.
T Consensus 171 D~~~~~~l~~~l~ 183 (240)
T 1ji0_A 171 APILVSEVFEVIQ 183 (240)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9988776654443
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=5.5e-26 Score=178.76 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=95.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC------CCCHH----------------HHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF------YTSSE----------------MLQKV 56 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~------~~~~~----------------~~~~~ 56 (163)
+||++++||+++|+||||||||||+|+|+|.++| |+|.++|.++.. ..... .....
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~en 101 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDN 101 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHH
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHH
Confidence 5899999999999999999999999999999876 999999987754 22110 00000
Q ss_pred HhccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 57 LEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
+...+... ........+++..+++.+++.+.. ++++.+| |+|| +||+++ +++.+|+++++|||++
T Consensus 102 i~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~---~r~~~~L-----SGGq---~QRvalArAL~~~P~lLLLDEP~s 168 (372)
T 1g29_1 102 IAFPLKLR--KVPRQEIDQRVREVAELLGLTELL---NRKPREL-----SGGQ---RQRVALGRAIVRKPQVFLMDEPLS 168 (372)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHHHHHHTCGGGT---TCCGGGS-----CHHH---HHHHHHHHHHHTCCSEEEEECTTT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEECCCCc
Confidence 00000000 000000012344567777886544 7889999 9999 999999 9999999999999999
Q ss_pred CcccCCchhhhceeEEE
Q psy2657 135 GSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~ 151 (163)
+ ||+..+..+..++
T Consensus 169 ~---LD~~~r~~l~~~l 182 (372)
T 1g29_1 169 N---LDAKLRVRMRAEL 182 (372)
T ss_dssp T---SCHHHHHHHHHHH
T ss_pred c---CCHHHHHHHHHHH
Confidence 9 9988876654433
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=3.9e-26 Score=171.65 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=94.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC---------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG--------- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------- 66 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++... .......+...... ...
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--PHEVRKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--HHHHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--HHHHhhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 5899999999999999999999999999999776 9999999886531 11111111100000 000
Q ss_pred --ceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 67 --RNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 67 --~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
..++... .+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++||||+| |
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---~~~~~~L-----SgGq---~qRv~lAraL~~~p~lllLDEPts~---L 177 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKI---KDRVSTY-----SKGM---VRKLLIARALMVNPRLAILDEPTSG---L 177 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGG---GSBGGGC-----CHHH---HHHHHHHHHHTTCCSEEEEESTTTT---C
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---c
Confidence 0000000 11233456667775443 6778888 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEE
Q psy2657 140 EPRLQRHFYVFA 151 (163)
Q Consensus 140 ~~~~~~~~~~~~ 151 (163)
|+..+..+..++
T Consensus 178 D~~~~~~l~~~l 189 (256)
T 1vpl_A 178 DVLNAREVRKIL 189 (256)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 998876665443
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.88 E-value=1.4e-22 Score=188.41 Aligned_cols=158 Identities=27% Similarity=0.517 Sum_probs=136.7
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccC----CceecCCC-CceEE
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKA----GRNFGPPG-NKTMI 78 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~ 78 (163)
.+..|++++|+||+|||||++++..+..++. ..+...+++..+++..++..++..+..+. +.++++.. +++++
T Consensus 1300 ll~~~~pvLL~GptGtGKT~li~~~L~~l~~--~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTMTLTSTLRAFPD--FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHHHHHHHGGGCTT--EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred HHHCCCcEEEECCCCCCHHHHHHHHHHhCCC--CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4578999999999999999999888777642 44567889999999999988887665432 45677764 88999
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCC--CcccCCchhhhceeEEEEcCCc
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTS--GSFTIEPRLQRHFYVFALRLGL 156 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~--g~~~l~~~~~~~~~~~~l~~~~ 156 (163)
.|+|++|||..++|++|++.|+|||++++|+||+++...+..+.++.++++++|++ |+.++++|++|||.++.++.|+
T Consensus 1378 lFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps 1457 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPS 1457 (3245)
T ss_dssp EEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCC
T ss_pred EEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCC
Confidence 99999999999999999999999999999999999888887779999999999984 6899999999999999999999
Q ss_pred ccc-ccCC
Q psy2657 157 LRI-GSIY 163 (163)
Q Consensus 157 ~~~-~~i~ 163 (163)
++. ..||
T Consensus 1458 ~esL~~If 1465 (3245)
T 3vkg_A 1458 TSSLTQIY 1465 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 876 5553
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.88 E-value=4.5e-26 Score=173.24 Aligned_cols=137 Identities=13% Similarity=0.116 Sum_probs=94.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec--CCCCHHHH-------HHHH-hcc--ccccCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN--FYTSSEML-------QKVL-EKP--LEKKAG 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~--~~~~~~~~-------~~~~-~~~--~~~~~~ 66 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++. ........ |... ... +.....
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~en 119 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDV 119 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHH
Confidence 5899999999999999999999999999999876 99999998764 22211111 1110 000 010000
Q ss_pred ---------ceecCCC---CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 67 ---------RNFGPPG---NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 67 ---------~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
..++... .+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++|||
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgGq---kqRv~lAraL~~~p~lLlLDEP 188 (279)
T 2ihy_A 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA---QQYIGYL-----STGE---KQRVMIARALMGQPQVLILDEP 188 (279)
T ss_dssp HHTTC---------CCHHHHHHHHHHHHHTTCGGGT---TSBGGGS-----CHHH---HHHHHHHHHHHTCCSEEEEEST
T ss_pred HHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh---cCChhhC-----CHHH---HHHHHHHHHHhCCCCEEEEeCC
Confidence 0011001 11233456777775443 7789999 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
|+| ||+..++.+..++
T Consensus 189 ts~---LD~~~~~~l~~~l 204 (279)
T 2ihy_A 189 AAG---LDFIARESLLSIL 204 (279)
T ss_dssp TTT---CCHHHHHHHHHHH
T ss_pred ccc---cCHHHHHHHHHHH
Confidence 999 9998877665443
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=7e-26 Score=171.57 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=93.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCCce-----ec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAGRN-----FG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~ 70 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++...... .....+...... ....+ ++
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~-~~~~~i~~v~Q~~~l~~~tv~enl~~~ 116 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHH-YLHTQVAAVGQEPLLFGRSFRENIAYG 116 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH-HHHHHEEEECSSCCCCSSBHHHHHHTT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHH-HHhccEEEEecCCccccccHHHHHhhh
Confidence 5799999999999999999999999999999876 9999999887654322 222222111100 00000 00
Q ss_pred CCC--C-c---------eEEEEEecC--CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCC
Q psy2657 71 PPG--N-K---------TMIYFVDDM--NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTS 134 (163)
Q Consensus 71 ~~~--~-~---------~~~~~l~~~--~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~ 134 (163)
... . + .+..+++.+ ++. .+.++++.+| |+|| |||+++ +++.+|+++++||||+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~---~~~~~~~~~L-----SgGq---~QRv~lAraL~~~p~lllLDEPts 185 (271)
T 2ixe_A 117 LTRTPTMEEITAVAMESGAHDFISGFPQGYD---TEVGETGNQL-----SGGQ---RQAVALARALIRKPRLLILDNATS 185 (271)
T ss_dssp CSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG---SBCCGGGTTS-----CHHH---HHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cccCChHHHHHHHHHHHhHHHHHHhhhcchh---hhhcCCcCCC-----CHHH---HHHHHHHHHHhcCCCEEEEECCcc
Confidence 000 0 0 011122222 222 2235667778 9999 999998 9999999999999999
Q ss_pred CcccCCchhhhceeEEEEcC
Q psy2657 135 GSFTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 135 g~~~l~~~~~~~~~~~~l~~ 154 (163)
+ ||+..+..+..++...
T Consensus 186 ~---LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 186 A---LDAGNQLRVQRLLYES 202 (271)
T ss_dssp T---CCHHHHHHHHHHHHHC
T ss_pred C---CCHHHHHHHHHHHHHH
Confidence 9 9998887776655544
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.87 E-value=1.3e-25 Score=168.15 Aligned_cols=137 Identities=10% Similarity=0.118 Sum_probs=96.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC------ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG------RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~ 70 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++....... ....+...... ... ..++
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK-LALHRAYLSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHH-HHHHEEEECSCCCCCTTCBHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHH-HhceEEEECCCCccCCCCcHHHHHHHh
Confidence 5799999999999999999999999999999766 99999998875443222 22221110000 000 0000
Q ss_pred C---CCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceE-------EEEEecCCCCccc
Q psy2657 71 P---PGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM-------FVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~---~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~-------~i~~deP~~g~~~ 138 (163)
. ...+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+ ++++||||+|
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---~qrv~lAraL~~~p~~~~~~~~lllLDEPts~--- 163 (249)
T 2qi9_C 98 QHDKTRTELLNDVAGALALDDKL---GRSTNQL-----SGGE---WQRVRLAAVVLQITPQANPAGQLLLLDEPMNS--- 163 (249)
T ss_dssp CSSTTCHHHHHHHHHHTTCGGGT---TSBGGGC-----CHHH---HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTT---
T ss_pred hccCCcHHHHHHHHHHcCChhHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCcCCCCCeEEEEECCccc---
Confidence 0 0112334566777775443 6778899 9999 999998 9999999 9999999999
Q ss_pred CCchhhhceeEEEE
Q psy2657 139 IEPRLQRHFYVFAL 152 (163)
Q Consensus 139 l~~~~~~~~~~~~l 152 (163)
||+..+..+..+..
T Consensus 164 LD~~~~~~l~~~l~ 177 (249)
T 2qi9_C 164 LDVAQQSALDKILS 177 (249)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99988776654433
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.87 E-value=6.4e-26 Score=169.02 Aligned_cols=132 Identities=13% Similarity=0.222 Sum_probs=94.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHH----------------HHHHHHhcccc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSE----------------MLQKVLEKPLE 62 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 62 (163)
+||++++ |+++|+||||||||||+|+++|.++| |+|.++|.++....... .....+....
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~- 95 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL- 95 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC-
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHH-
Confidence 5789999 99999999999999999999999876 99999998864321110 0000000000
Q ss_pred ccCCceec-CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 63 KKAGRNFG-PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 63 ~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
..++ ....+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++||||+| |
T Consensus 96 ----~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---kqRv~lAral~~~p~lllLDEPts~---L 157 (240)
T 2onk_A 96 ----RNVERVERDRRVREMAEKLGIAHLL---DRKPARL-----SGGE---RQRVALARALVIQPRLLLLDEPLSA---V 157 (240)
T ss_dssp ----TTSCHHHHHHHHHHHHHTTTCTTTT---TCCGGGS-----CHHH---HHHHHHHHHHTTCCSSBEEESTTSS---C
T ss_pred ----HHcCCchHHHHHHHHHHHcCCHHHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---C
Confidence 0000 00012344567788886544 7889999 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEEEE
Q psy2657 140 EPRLQRHFYVFAL 152 (163)
Q Consensus 140 ~~~~~~~~~~~~l 152 (163)
|+..++.+..+..
T Consensus 158 D~~~~~~~~~~l~ 170 (240)
T 2onk_A 158 DLKTKGVLMEELR 170 (240)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9988776654443
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=3e-25 Score=166.06 Aligned_cols=139 Identities=16% Similarity=0.177 Sum_probs=89.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCCc-----eec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAGR-----NFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~ 70 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|.++....... ....+...... .... .++
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~l~~~tv~enl~~~ 106 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNW-LRRQVGVVLQDNVLLNRSIIDNISLA 106 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHH-HHHHEEEECSSCCCTTSBHHHHHTTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHH-HHhcEEEEeCCCccccccHHHHHhcc
Confidence 5899999999999999999999999999999876 99999998876543222 22222111110 0000 000
Q ss_pred CC-C-CceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PP-G-NKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~-~-~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.. . .+++...++.+++.+ .+...+.++.+| |+|| |||+++ +++.+|+++++||||++
T Consensus 107 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L-----SgGq---~qRv~iAraL~~~p~lllLDEPts~--- 175 (247)
T 2ff7_A 107 NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL-----SGGQ---RQRIAIARALVNNPKILIFDEATSA--- 175 (247)
T ss_dssp CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCC-----CHHH---HHHHHHHHHHTTCCSEEEECCCCSC---
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 00 0 011111122223211 111123345566 9999 999998 99999999999999999
Q ss_pred CCchhhhceeEEE
Q psy2657 139 IEPRLQRHFYVFA 151 (163)
Q Consensus 139 l~~~~~~~~~~~~ 151 (163)
||+.....+..++
T Consensus 176 LD~~~~~~i~~~l 188 (247)
T 2ff7_A 176 LDYESEHVIMRNM 188 (247)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9988776664433
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=9.2e-24 Score=157.62 Aligned_cols=138 Identities=10% Similarity=0.105 Sum_probs=86.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhcccc--------ccCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLE--------KKAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 70 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.+++........+ .+..... ......++
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~i~~v~q~~~l~~~tv~enl~~~ 99 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS-QIGFVSQDSAIMAGTIRENLTYG 99 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT-TCCEECCSSCCCCEEHHHHTTSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh-hEEEEcCCCccccccHHHHHhhh
Confidence 5799999999999999999999999999999766 99999998875432111000 0000000 00000010
Q ss_pred --CCC-CceEEEEEecCCCCCCc--------CCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 71 --PPG-NKTMIYFVDDMNMPEVD--------AYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 71 --~~~-~~~~~~~l~~~~l~~~~--------~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
... .+++...++.+++.+.. ...+.++.+| |+|| |||+++ +++.+|+++++||||++
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L-----SgGq---~qrv~lAral~~~p~lllLDEPts~-- 169 (243)
T 1mv5_A 100 LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI-----SGGQ---RQRLAIARAFLRNPKILMLDEATAS-- 169 (243)
T ss_dssp TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC-----CHHH---HHHHHHHHHHHHCCSEEEEECCSCS--
T ss_pred ccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC-----CHHH---HHHHHHHHHHhcCCCEEEEECCccc--
Confidence 000 01111222233332211 0112334567 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEE
Q psy2657 138 TIEPRLQRHFYVF 150 (163)
Q Consensus 138 ~l~~~~~~~~~~~ 150 (163)
||+.....+..+
T Consensus 170 -LD~~~~~~i~~~ 181 (243)
T 1mv5_A 170 -LDSESESMVQKA 181 (243)
T ss_dssp -SCSSSCCHHHHH
T ss_pred -CCHHHHHHHHHH
Confidence 998877665443
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.86 E-value=2.5e-25 Score=166.76 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=89.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc--CCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC------c
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS--LPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG------R 67 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~--~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~ 67 (163)
+||++++||+++|+||||||||||+|+++|. ++| |+|.++|.++.........+..+...... ... .
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 101 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFL 101 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHH
Confidence 5899999999999999999999999999997 544 99999998876543222211111000000 000 0
Q ss_pred ee------cCCC-----CceEEEEEecCCCC-CCcCCCCCCHHH-HHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 68 NF------GPPG-----NKTMIYFVDDMNMP-EVDAYGTVQPHT-VIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 68 ~~------~~~~-----~~~~~~~l~~~~l~-~~~~~~~~~~~e-llr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
.+ +... .+++...++.+++. ... ++++.+ | |+|| |||+++ +++.+|+++++|||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~~~L-----SgGq---kQrv~iAraL~~~p~lllLDEP 170 (250)
T 2d2e_A 102 RLALQAKLGREVGVAEFWTKVKKALELLDWDESYL---SRYLNEGF-----SGGE---KKRNEILQLLVLEPTYAVLDET 170 (250)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG---GSBTTCC---------H---HHHHHHHHHHHHCCSEEEEECG
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh---cCCcccCC-----CHHH---HHHHHHHHHHHcCCCEEEEeCC
Confidence 00 0000 11233455666773 333 666777 8 9999 999998 99999999999999
Q ss_pred CCCcccCCchhhhceeEEE
Q psy2657 133 TSGSFTIEPRLQRHFYVFA 151 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~~~~ 151 (163)
|++ ||+..+..+..++
T Consensus 171 ts~---LD~~~~~~l~~~l 186 (250)
T 2d2e_A 171 DSG---LDIDALKVVARGV 186 (250)
T ss_dssp GGT---TCHHHHHHHHHHH
T ss_pred CcC---CCHHHHHHHHHHH
Confidence 999 9988776664443
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.86 E-value=1.4e-25 Score=169.53 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=95.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC--CC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG------- 66 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------- 66 (163)
+||++++||+++|+||||||||||+|+++|.+ +| |+|.++|.++.........+..+...... ...
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~ 118 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFL 118 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHH
Confidence 58999999999999999999999999999983 33 99999998876543222211111000000 000
Q ss_pred -----ce---ecCC--C----CceEEEEEecCCCCC-CcCCCCCCHH-HHHHHHHhcCCceecCCcce--EeecceEEEE
Q psy2657 67 -----RN---FGPP--G----NKTMIYFVDDMNMPE-VDAYGTVQPH-TVIRQYMDYQHWYDRQKLSL--KDIHNIMFVS 128 (163)
Q Consensus 67 -----~~---~~~~--~----~~~~~~~l~~~~l~~-~~~~~~~~~~-ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~ 128 (163)
.. ++.. . .+++..+++.+++.. .. ++++. +| |+|| |||+++ +++.+|++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~~~L-----SgGq---~QRv~iAraL~~~p~lLl 187 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL---TRSVNVGF-----SGGE---KKRNDILQMAVLEPELCI 187 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT---TSBTTTTC-----CHHH---HHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh---cCCcccCC-----CHHH---HHHHHHHHHHHhCCCEEE
Confidence 00 0100 0 112345677778752 22 56665 48 9999 999998 9999999999
Q ss_pred EecCCCCcccCCchhhhceeEEEEcC
Q psy2657 129 AMNPTSGSFTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 129 ~deP~~g~~~l~~~~~~~~~~~~l~~ 154 (163)
+||||++ ||+..++.+..++...
T Consensus 188 LDEPts~---LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 188 LDESDSG---LDIDALKVVADGVNSL 210 (267)
T ss_dssp EESTTTT---CCHHHHHHHHHHHHTT
T ss_pred EeCCCCC---CCHHHHHHHHHHHHHH
Confidence 9999999 9998887776554443
No 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.85 E-value=2e-24 Score=162.09 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=91.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeee-eeeecCC-----CCHHHHHHHHhccccccCCc--eec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALT-SVPFNFY-----TSSEMLQKVLEKPLEKKAGR--NFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~ 70 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|... ...+-.+ .......++.. ......+. ...
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~-~~~~~~~~~~~~~ 102 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLM-GRSTHINTFAKPK 102 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHG-GGGGGSCTTCCCC
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHH-hhhhhcccccCCC
Confidence 5799999999999999999999999999999877 666421 1111111 11112222211 11100000 000
Q ss_pred CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
....+++..+++.+++.+.. ++++.+| |+|| |||+++ +++.+|+++++||||++ ||+..++.+.
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~---~~~~~~L-----SgGq---~qrv~lAraL~~~p~lllLDEPts~---LD~~~~~~l~ 168 (253)
T 2nq2_C 103 SHDYQVAMQALDYLNLTHLA---KREFTSL-----SGGQ---RQLILIARAIASECKLILLDEPTSA---LDLANQDIVL 168 (253)
T ss_dssp HHHHHHHHHHHHHTTCGGGT---TSBGGGS-----CHHH---HHHHHHHHHHHTTCSEEEESSSSTT---SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc---CCHHHHHHHH
Confidence 00112344567788886544 7789999 9999 999998 99999999999999999 9998877665
Q ss_pred EEEE
Q psy2657 149 VFAL 152 (163)
Q Consensus 149 ~~~l 152 (163)
.++.
T Consensus 169 ~~l~ 172 (253)
T 2nq2_C 169 SLLI 172 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=3.2e-25 Score=167.18 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=89.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCC----H-HHHHHHHhccccccCCcee----
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTS----S-EMLQKVLEKPLEKKAGRNF---- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~---- 69 (163)
+||+++ |++++|+||||||||||+|+++|.+ | |+|.++|.++..... . ...|.... .+.......+
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~~~ 100 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYEEL 100 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHHHH
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhhhh
Confidence 478999 9999999999999999999999998 6 899999876542100 0 00000000 0000000000
Q ss_pred cCCCCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhc
Q psy2657 70 GPPGNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRH 146 (163)
Q Consensus 70 ~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~ 146 (163)
.....+++..+++.+++. +.. ++++.+| |+|| |||+++ +++.+|+++++||||++ ||+..+..
T Consensus 101 ~~~~~~~~~~~l~~~gl~~~~~---~~~~~~L-----SgGq---kqRv~lAraL~~~p~lllLDEPts~---LD~~~~~~ 166 (263)
T 2pjz_A 101 KGLDRDLFLEMLKALKLGEEIL---RRKLYKL-----SAGQ---SVLVRTSLALASQPEIVGLDEPFEN---VDAARRHV 166 (263)
T ss_dssp TCCCHHHHHHHHHHTTCCGGGG---GSBGGGS-----CHHH---HHHHHHHHHHHTCCSEEEEECTTTT---CCHHHHHH
T ss_pred cchHHHHHHHHHHHcCCChhHh---cCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEECCccc---cCHHHHHH
Confidence 011122344567777886 543 7789999 9999 999998 99999999999999999 99877665
Q ss_pred ee
Q psy2657 147 FY 148 (163)
Q Consensus 147 ~~ 148 (163)
+.
T Consensus 167 l~ 168 (263)
T 2pjz_A 167 IS 168 (263)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.84 E-value=2.1e-23 Score=160.19 Aligned_cols=134 Identities=10% Similarity=0.126 Sum_probs=85.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCcee---------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNF--------- 69 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 69 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++........ ...+...... ...|
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~-r~~i~~v~Q~--~~lf~~Tv~eNi~ 149 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL-RSHIGVVPQD--TVLFNDTIADNIR 149 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHH-HHTEEEECSS--CCCCSEEHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHH-hcceEEEecC--CccCcccHHHHHH
Confidence 5899999999999999999999999999999876 999999999876653332 2221111110 0011
Q ss_pred -cCCC-C-ceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 70 -GPPG-N-KTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 70 -~~~~-~-~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
+... . +++...++..++.+ .+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L-----SGGq---rQRvaiARAL~~~p~iLlLDEPts~- 220 (306)
T 3nh6_A 150 YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL-----SGGE---KQRVAIARTILKAPGIILLDEATSA- 220 (306)
T ss_dssp TTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCC-----CHHH---HHHHHHHHHHHHCCSEEEEECCSSC-
T ss_pred hhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCC-----CHHH---HHHHHHHHHHHhCCCEEEEECCccc-
Confidence 1000 0 00000111111100 000011222344 9999 999999 99999999999999999
Q ss_pred ccCCchhhhcee
Q psy2657 137 FTIEPRLQRHFY 148 (163)
Q Consensus 137 ~~l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 221 --LD~~~~~~i~ 230 (306)
T 3nh6_A 221 --LDTSNERAIQ 230 (306)
T ss_dssp --CCHHHHHHHH
T ss_pred --CCHHHHHHHH
Confidence 9987766553
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=7.3e-25 Score=173.19 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=92.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhccccc---cCCc----e--ec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAGR----N--FG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~--~~ 70 (163)
+||++++||+++|+||||||||||+|+|+|.++. |+|.++|.+++....... +..+....+. +... + +.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~-rr~ig~v~Q~~~lf~~tv~enl~~~~ 118 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW-RKAFGVIPQKVFIFSGTFRKNLDPNA 118 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHH-HHTEEEESCCCCCCSEEHHHHHCTTC
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHH-hCCEEEEcCCcccCccCHHHHhhhcc
Confidence 5899999999999999999999999999998654 999999998876543322 2211110000 0000 0 00
Q ss_pred CCCCceEEEEEecCCCCCCcCCCCCCHHH-----------HHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHT-----------VIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 71 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~e-----------llr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
....+++...++.+++.... ++++.+ | |+|| |||+++ +++.+|+++++|||+++
T Consensus 119 ~~~~~~v~~~l~~~~L~~~~---~~~p~~l~~~i~~~g~~L-----SGGq---rQRvalARAL~~~P~lLLLDEPts~-- 185 (390)
T 3gd7_A 119 AHSDQEIWKVADEVGLRSVI---EQFPGKLDFVLVDGGCVL-----SHGH---KQLMCLARSVLSKAKILLLDEPSAH-- 185 (390)
T ss_dssp CSCHHHHHHHHHHTTCHHHH---TTSTTGGGCEECTTTTTS-----CHHH---HHHHHHHHHHHTTCCEEEEESHHHH--
T ss_pred ccCHHHHHHHHHHhCCHHHH---hhcccccccccccccccC-----CHHH---HHHHHHHHHHhcCCCEEEEeCCccC--
Confidence 11111222344555554322 455555 6 9999 999999 99999999999999999
Q ss_pred cCCchhhhceeEEE
Q psy2657 138 TIEPRLQRHFYVFA 151 (163)
Q Consensus 138 ~l~~~~~~~~~~~~ 151 (163)
||+..+..+..++
T Consensus 186 -LD~~~~~~l~~~l 198 (390)
T 3gd7_A 186 -LDPVTYQIIRRTL 198 (390)
T ss_dssp -SCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHH
Confidence 9988876665433
No 35
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.84 E-value=1e-20 Score=175.06 Aligned_cols=158 Identities=25% Similarity=0.474 Sum_probs=133.6
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhcccccc---CCceecCC-CCceEEE
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK---AGRNFGPP-GNKTMIY 79 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~ 79 (163)
.+..|++++++||+|||||++++.++...+ ...+...+++..+++..++..++..+... .+.+++++ .+++++.
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~la~~~l~~~~--~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNSS--LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHHHHHHHHSCS--SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred HHHCCCeEEEECCCCCCHHHHHHHHHhcCC--CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 456789999999999999999977777653 34566788899999988888888765432 34556664 6788999
Q ss_pred EEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCC--CCcccCCchhhhceeEEEEcCCcc
Q psy2657 80 FVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPT--SGSFTIEPRLQRHFYVFALRLGLL 157 (163)
Q Consensus 80 ~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~--~g~~~l~~~~~~~~~~~~l~~~~~ 157 (163)
|+|++|++..+.|+++++.|+|||+++.|+||+++...+..+.+..++++++|+ +||..|++|++|+|+++.++.|++
T Consensus 1341 FiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~ 1420 (2695)
T 4akg_A 1341 FCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSG 1420 (2695)
T ss_dssp EEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTT
T ss_pred EecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCH
Confidence 999999999999999999999999999999999887777667999999999998 468999999999999999999998
Q ss_pred cc-ccCC
Q psy2657 158 RI-GSIY 163 (163)
Q Consensus 158 ~~-~~i~ 163 (163)
+. ..||
T Consensus 1421 ~~l~~I~ 1427 (2695)
T 4akg_A 1421 KSLSQIY 1427 (2695)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 76 5443
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.84 E-value=3.1e-23 Score=156.16 Aligned_cols=138 Identities=16% Similarity=0.245 Sum_probs=86.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecCCCCHHHHHHHHhcccccc---C-----CceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKPLEKK---A-----GRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~ 71 (163)
+||++++|++++|+||||||||||+|+++|.+++ |+|.++|.++....... ....+....... . ...++.
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~-~~~~i~~v~Q~~~l~~~tv~enl~~~~ 117 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNS-IRSIIGIVPQDTILFNETIKYNILYGK 117 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHH-HHTTEEEECSSCCCCSEEHHHHHHTTC
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHH-HhccEEEEcCCCcccccCHHHHHhccC
Confidence 5799999999999999999999999999999765 99999998876443221 111111000000 0 000000
Q ss_pred C--CCceEEEEEecCCCCCC--------cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccC
Q psy2657 72 P--GNKTMIYFVDDMNMPEV--------DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTI 139 (163)
Q Consensus 72 ~--~~~~~~~~l~~~~l~~~--------~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l 139 (163)
. ..+++...++.+++.+. +....+++.+| |+|| |||+++ +++.+|+++++||||++ |
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L-----SgGq---kqRv~lAraL~~~p~lllLDEPts~---L 186 (260)
T 2ghi_A 118 LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL-----SGGE---RQRIAIARCLLKDPKIVIFDEATSS---L 186 (260)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC-----CHHH---HHHHHHHHHHHHCCSEEEEECCCCT---T
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC-----CHHH---HHHHHHHHHHHcCCCEEEEECcccc---C
Confidence 0 00111112222222110 00112345566 9999 999998 99999999999999999 9
Q ss_pred CchhhhceeEE
Q psy2657 140 EPRLQRHFYVF 150 (163)
Q Consensus 140 ~~~~~~~~~~~ 150 (163)
|+.....+..+
T Consensus 187 D~~~~~~i~~~ 197 (260)
T 2ghi_A 187 DSKTEYLFQKA 197 (260)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98877665433
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.83 E-value=4.3e-24 Score=158.12 Aligned_cols=130 Identities=13% Similarity=0.139 Sum_probs=82.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCH---HHHHHHHhccccccCCceecCCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSS---EMLQKVLEKPLEKKAGRNFGPPGN 74 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 74 (163)
+||++++||+++|+||||||||||+|+++|.++| |+|.++|. .+-.+... ......+...... ..
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~---------~~ 97 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSY---------DE 97 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCC---------CH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCc---------Ch
Confidence 5789999999999999999999999999999876 88888762 11111100 0111111110000 00
Q ss_pred ceEEEEEecCCCC-------CC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhh
Q psy2657 75 KTMIYFVDDMNMP-------EV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 75 ~~~~~~l~~~~l~-------~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
.+....++..++. .. +.....++.+| |+|| |||+++ +++.+|+++++||||++ ||+...
T Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L-----SgGq---kqrv~lAral~~~p~lllLDEPts~---LD~~~~ 166 (229)
T 2pze_A 98 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL-----SGGQ---RARISLARAVYKDADLYLLDSPFGY---LDVLTE 166 (229)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTS-----CHHH---HHHHHHHHHHHSCCSEEEEESTTTT---SCHHHH
T ss_pred HHHHHHHHHhCcHHHHHhCcccccccccCCCCcC-----CHHH---HHHHHHHHHHhcCCCEEEEECcccC---CCHHHH
Confidence 0000011111111 00 11112345678 9999 999998 99999999999999999 999988
Q ss_pred hceeEE
Q psy2657 145 RHFYVF 150 (163)
Q Consensus 145 ~~~~~~ 150 (163)
..+..+
T Consensus 167 ~~i~~~ 172 (229)
T 2pze_A 167 KEIFES 172 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 38
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.82 E-value=4.2e-24 Score=175.17 Aligned_cols=128 Identities=11% Similarity=0.070 Sum_probs=89.2
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCH------HHHHHHHhccccccCCceecCCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSS------EMLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
|+++.+||+++|+||||||||||+|+++|.++| |+|.+++..+...+.. ......+.... .. +....
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~----~~-~~~~~ 362 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENAS----KD-ALSTS 362 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHC----SS-TTCTT
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhh----hh-ccchh
Confidence 577899999999999999999999999999766 8888777655432110 01111111100 00 00011
Q ss_pred CceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 74 NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 74 ~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
...+..+++.+++.+. .++++.+| |+|+ +||+++ +++.+|+++++||||+| ||+..+..+.
T Consensus 363 ~~~~~~~l~~~~l~~~---~~~~~~~L-----SGGq---~QRv~iAraL~~~p~lLlLDEPT~g---LD~~~~~~i~ 425 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRL---LESNVNDL-----SGGE---LQKLYIAATLAKEADLYVLDQPSSY---LDVEERYIVA 425 (538)
T ss_dssp SHHHHHTTTTTTGGGC---TTSBGGGC-----CHHH---HHHHHHHHHHHSCCSEEEEESTTTT---CCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHH---hcCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccC---CCHHHHHHHH
Confidence 1222345566676543 38889999 9999 999999 99999999999999999 9988765543
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=1.3e-21 Score=162.09 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=89.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--------cCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------KAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 70 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++...+.... +..+....+. .....++
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~-~~~i~~v~Q~~~l~~~tv~eni~~~ 440 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL-RRHFALVSQNVHLFNDTIANNIAYA 440 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHH-hcCeEEEcCCCccccccHHHHHhcc
Confidence 5899999999999999999999999999999766 999999998765432221 1111100000 0000011
Q ss_pred C--C-CCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 71 P--P-GNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 71 ~--~-~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
. . ..+++...++.+++.+ .+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L-----SgGq---~qr~~iAral~~~p~illlDEpts~-- 510 (582)
T 3b5x_A 441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL-----SGGQ---RQRVAIARALLRDAPVLILDEATSA-- 510 (582)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC-----CHHH---HHHHHHHHHHHcCCCEEEEECcccc--
Confidence 1 0 1111222222333211 111112234566 9999 999998 99999999999999999
Q ss_pred cCCchhhhceeEEE
Q psy2657 138 TIEPRLQRHFYVFA 151 (163)
Q Consensus 138 ~l~~~~~~~~~~~~ 151 (163)
||+...+.+....
T Consensus 511 -LD~~~~~~i~~~l 523 (582)
T 3b5x_A 511 -LDTESERAIQAAL 523 (582)
T ss_pred -CCHHHHHHHHHHH
Confidence 9998876664433
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.81 E-value=4e-24 Score=159.04 Aligned_cols=134 Identities=16% Similarity=0.245 Sum_probs=84.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCCCH---HHHHHHHhccccccCCceecCCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYTSS---EMLQKVLEKPLEKKAGRNFGPPGN 74 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 74 (163)
+||++++|++++|+||||||||||+|+++|.++| |+|.++|. .+-.+... ......+.... . +.....
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~-----~-~~~~~~ 97 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGC-----Q-LEEPYY 97 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTS-----C-CCTTHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCcc-----c-cCHHHH
Confidence 5799999999999999999999999999999876 88888762 11111110 01111111100 0 000000
Q ss_pred ceEE---EEEecCCCCC--CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 75 KTMI---YFVDDMNMPE--VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 75 ~~~~---~~l~~~~l~~--~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
+++. ...+.+++.. .+...++++.+| |+|| |||+++ +++.+|+++++||||++ ||+.....+
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L-----SgGq---kqRv~lAraL~~~p~lllLDEPts~---LD~~~~~~i 166 (237)
T 2cbz_A 98 RSVIQACALLPDLEILPSGDRTEIGEKGVNL-----SGGQ---KQRVSLARAVYSNADIYLFDDPLSA---VDAHVGKHI 166 (237)
T ss_dssp HHHHHHTTCHHHHTTSTTGGGSEESTTSBCC-----CHHH---HHHHHHHHHHHHCCSEEEEESTTTT---SCHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccccccccccCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEeCcccc---cCHHHHHHH
Confidence 0000 0111222211 011124557788 9999 999998 99999999999999999 999887666
Q ss_pred eEEE
Q psy2657 148 YVFA 151 (163)
Q Consensus 148 ~~~~ 151 (163)
..++
T Consensus 167 ~~~l 170 (237)
T 2cbz_A 167 FENV 170 (237)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5444
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.79 E-value=5e-23 Score=157.20 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=81.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee-eecCCC----CHHHHHHHHhccccccCCceecCCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV-PFNFYT----SSEMLQKVLEKPLEKKAGRNFGPPG 73 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (163)
+||++++|++++|+||||||||||+|+++|.++| |+|.++|. .+-.+. ... ....+. .... .
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~t-v~enl~-~~~~--~------- 125 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGT-IKENII-GVSY--D------- 125 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSB-HHHHHH-TTCC--C-------
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCccc-HHHHhh-Cccc--c-------
Confidence 5799999999999999999999999999999876 88888762 111111 111 112221 1100 0
Q ss_pred CceEEEEEecCCCCC-------C-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchh
Q psy2657 74 NKTMIYFVDDMNMPE-------V-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRL 143 (163)
Q Consensus 74 ~~~~~~~l~~~~l~~-------~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~ 143 (163)
.......++.+++.. . +......+.+| |+|| |||+++ +++.+|+++++|||+++ ||+..
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~L-----SgGq---~QRv~lAraL~~~p~lllLDEPts~---LD~~~ 194 (290)
T 2bbs_A 126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL-----SGGQ---RARISLARAVYKDADLYLLDSPFGY---LDVLT 194 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCC-----CHHH---HHHHHHHHHHHSCCSEEEEESTTTT---CCHHH
T ss_pred hHHHHHHHHHhChHHHHHhccccccchhcCccCcC-----CHHH---HHHHHHHHHHHCCCCEEEEECCccc---CCHHH
Confidence 000000111122211 0 01112334567 9999 999998 99999999999999999 99998
Q ss_pred hhceeEE
Q psy2657 144 QRHFYVF 150 (163)
Q Consensus 144 ~~~~~~~ 150 (163)
+..+..+
T Consensus 195 ~~~i~~~ 201 (290)
T 2bbs_A 195 EKEIFES 201 (290)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.79 E-value=4.6e-22 Score=164.70 Aligned_cols=136 Identities=16% Similarity=0.175 Sum_probs=88.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-----ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-----RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~ 70 (163)
+||++++||.++|+||||||||||+++++|.++| |+|.++|.++...+... .+..+....+. ... ..++
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~~~~i~~v~Q~~~l~~~tv~eni~~~ 440 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS-LRNQVALVSQNVHLFNDTVANNIAYA 440 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH-HHHTEEEECSSCCCCSSBHHHHHHTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHH-HHhhCeEEccCCcCCCCCHHHHHhcc
Confidence 5789999999999999999999999999999876 99999999886554322 22221110000 000 0011
Q ss_pred C--C-CCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 71 P--P-GNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 71 ~--~-~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
. . ..+++...++.+++.+ .+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 441 ~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L-----SgGq---~qrl~iAral~~~p~illlDEpts~-- 510 (582)
T 3b60_A 441 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL-----SGGQ---RQRIAIARALLRDSPILILDEATSA-- 510 (582)
T ss_dssp TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS-----CHHH---HHHHHHHHHHHHCCSEEEEETTTSS--
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC-----CHHH---HHHHHHHHHHHhCCCEEEEECcccc--
Confidence 1 0 0111222233333311 111112234455 9999 999998 99999999999999999
Q ss_pred cCCchhhhcee
Q psy2657 138 TIEPRLQRHFY 148 (163)
Q Consensus 138 ~l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 511 -LD~~~~~~i~ 520 (582)
T 3b60_A 511 -LDTESERAIQ 520 (582)
T ss_dssp -CCHHHHHHHH
T ss_pred -CCHHHHHHHH
Confidence 9987766553
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=2.7e-22 Score=166.55 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=87.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCCc-----eec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAGR-----NFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~ 70 (163)
+||++++||.++|+||||||||||+++++|.++| |+|.++|.++...+.... +..+....+. .... .++
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r~~i~~v~Q~~~lf~~tv~eni~~~ 452 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL-RSSIGIVLQDTILFSTTVKENLKYG 452 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH-HHHEEEECTTCCCCSSBHHHHHHSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH-HhceEEEeCCCccccccHHHHHhcC
Confidence 5789999999999999999999999999999876 999999999877654333 2222111110 0000 011
Q ss_pred CC--CCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PP--GNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~--~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+ ..+++...++..++.+ .+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L-----SgGq---~Qrv~iAral~~~p~illlDEpts~--- 521 (598)
T 3qf4_B 453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL-----SQGQ---RQLLAITRAFLANPKILILDEATSN--- 521 (598)
T ss_dssp STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS-----CHHH---HHHHHHHHHHHTCCSEEEECCCCTT---
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC-----CHHH---HHHHHHHHHHhcCCCEEEEECCccC---
Confidence 11 1111112222222211 000001112344 9999 999999 99999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 522 LD~~~~~~i~ 531 (598)
T 3qf4_B 522 VDTKTEKSIQ 531 (598)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9987766553
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.78 E-value=5.3e-22 Score=164.71 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=88.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-----ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-----RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~ 70 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.++...+... .+..+....+. ... ..++
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~~~~i~~v~Q~~~l~~~tv~eni~~~ 441 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVW-LRSKIGTVSQEPILFSCSIAENIAYG 441 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHH-HHHSEEEECSSCCCCSSBHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHH-HHhceEEEccCCcccCCCHHHHHhhc
Confidence 5889999999999999999999999999999876 99999999886554322 22211110000 000 0011
Q ss_pred CC-----CCceEEEEEecCCCCC--------CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 71 PP-----GNKTMIYFVDDMNMPE--------VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 71 ~~-----~~~~~~~~l~~~~l~~--------~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
.. ..+++...++.+++.+ .+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L-----SgGq---~qrv~iAral~~~p~illlDEpts~ 513 (595)
T 2yl4_A 442 ADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL-----SGGQ---KQRIAIARALLKNPKILLLDEATSA 513 (595)
T ss_dssp SSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC-----CHHH---HHHHHHHHHHHHCCSEEEEECCCSS
T ss_pred CCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC-----CHHH---HHHHHHHHHHHcCCCEEEEECcccC
Confidence 11 1112222333333311 111112234566 9999 999998 99999999999999999
Q ss_pred cccCCchhhhcee
Q psy2657 136 SFTIEPRLQRHFY 148 (163)
Q Consensus 136 ~~~l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 514 ---LD~~~~~~i~ 523 (595)
T 2yl4_A 514 ---LDAENEYLVQ 523 (595)
T ss_dssp ---CCHHHHHHHH
T ss_pred ---CCHHHHHHHH
Confidence 9988766554
No 45
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.78 E-value=3.2e-22 Score=165.52 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=88.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-----ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-----RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~ 70 (163)
+||++++||.++|+||||||||||+++++|.++| |+|.++|.++...+.....+ .+....+. ... ..++
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~l~~~tv~eni~~~ 438 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN-QIGLVQQDNILFSDTVKENILLG 438 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH-TEEEECSSCCCCSSBHHHHHGGG
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh-heEEEeCCCccCcccHHHHHhcC
Confidence 5789999999999999999999999999999877 99999999987665433222 11111000 000 0111
Q ss_pred CCC--CceEEEEEecCCC-------C-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PPG--NKTMIYFVDDMNM-------P-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~~--~~~~~~~l~~~~l-------~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+. .+++...++..++ | ..+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L-----SgGq---~Qrv~lAral~~~p~illlDEpts~--- 507 (578)
T 4a82_A 439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL-----SGGQ---KQRLSIARIFLNNPPILILDEATSA--- 507 (578)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS-----CHHH---HHHHHHHHHHHHCCSEEEEESTTTT---
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC-----CHHH---HHHHHHHHHHHcCCCEEEEECcccc---
Confidence 111 0111111222221 1 1111123344566 9999 999999 99999999999999999
Q ss_pred CCchhhhcee
Q psy2657 139 IEPRLQRHFY 148 (163)
Q Consensus 139 l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 508 LD~~~~~~i~ 517 (578)
T 4a82_A 508 LDLESESIIQ 517 (578)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9987765553
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=3.3e-22 Score=165.69 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=89.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cC-----Cceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KA-----GRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~ 70 (163)
+||++++||.++|+||||||||||+++++|.++| |+|.++|.++...+.....+ .+....+. .. ...++
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~~lf~~tv~eni~~~ 440 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG-HISAVPQETVLFSGTIKENLKWG 440 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH-HEEEECSSCCCCSEEHHHHHTTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh-heEEECCCCcCcCccHHHHHhcc
Confidence 5789999999999999999999999999999876 99999999987765443322 22111110 00 00011
Q ss_pred CCC-C-ceEEEEEecCCC-------C-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PPG-N-KTMIYFVDDMNM-------P-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~~-~-~~~~~~l~~~~l-------~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+. . ++....++..++ + ..+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L-----SgGq---rQrv~lARal~~~p~illlDEpts~--- 509 (587)
T 3qf4_A 441 REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF-----SGGQ---KQRLSIARALVKKPKVLILDDCTSS--- 509 (587)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS-----CHHH---HHHHHHHHHHHTCCSEEEEESCCTT---
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc-----CHHH---HHHHHHHHHHHcCCCEEEEECCccc---
Confidence 110 0 011111111111 1 1111113445566 9999 999999 99999999999999999
Q ss_pred CCchhhhceeE
Q psy2657 139 IEPRLQRHFYV 149 (163)
Q Consensus 139 l~~~~~~~~~~ 149 (163)
||+...+.+..
T Consensus 510 LD~~~~~~i~~ 520 (587)
T 3qf4_A 510 VDPITEKRILD 520 (587)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99887766543
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=6.2e-22 Score=162.45 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=82.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCe---------eeeeeeecCCCCHHHHHHHHhcccc--ccC--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETY---------ALTSVPFNFYTSSEMLQKVLEKPLE--KKA-- 65 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-- 65 (163)
+| .+++||+++|+||||||||||+|+++|.++| |++ .++|.++. ............ ...
T Consensus 41 vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 41 LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ-----NYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHH-----HHHHHHHTTSCCCEEECSC
T ss_pred cC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHH-----HHHHHHHHHhhhhhhhhhh
Confidence 35 6899999999999999999999999999766 663 12221110 000000000000 000
Q ss_pred ---------Ccee----cCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEe
Q psy2657 66 ---------GRNF----GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAM 130 (163)
Q Consensus 66 ---------~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~d 130 (163)
..+. .....+++...++.+++.... ++++.+| |+|| +||+++ +++.+|+++++|
T Consensus 115 ~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~---~~~~~~L-----SgGe---kQRv~iAraL~~~P~lLlLD 183 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL---EREIQHL-----SGGE---LQRVAIAAALLRNATFYFFD 183 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTT---TSBGGGC-----CHHH---HHHHHHHHHHHSCCSEEEEE
T ss_pred hhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhh---hCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEE
Confidence 0000 001122344566777875443 7789999 9999 999999 999999999999
Q ss_pred cCCCCcccCCchhhhce
Q psy2657 131 NPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 131 eP~~g~~~l~~~~~~~~ 147 (163)
|||++ ||+..+..+
T Consensus 184 EPTs~---LD~~~~~~l 197 (538)
T 1yqt_A 184 EPSSY---LDIRQRLNA 197 (538)
T ss_dssp STTTT---CCHHHHHHH
T ss_pred CCccc---CCHHHHHHH
Confidence 99999 998854443
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=1.2e-21 Score=162.56 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=82.6
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCe---------eeeeeeecCCCCHHHHHHHHhccc---------cc
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETY---------ALTSVPFNFYTSSEMLQKVLEKPL---------EK 63 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i---------~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 63 (163)
.+++||+++|+||||||||||+|+++|.++| |++ .+.|.++. ........... ..
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~-----~~~~~~~~~~~~i~~~~q~~~~ 187 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ-----NYFERLKNGEIRPVVKPQYVDL 187 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHH-----HHHHHHHHTSCCCEEECSCGGG
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehh-----hhhhhhhhhhcceEEeechhhh
Confidence 6899999999999999999999999999766 663 12221110 00011100000 00
Q ss_pred cC----Cce----ecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCC
Q psy2657 64 KA----GRN----FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPT 133 (163)
Q Consensus 64 ~~----~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~ 133 (163)
.. ..+ ......+++..+++.+++.... ++++.+| |+|| +||+++ +++.+|+++++||||
T Consensus 188 ~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~---~~~~~~L-----SGGe---kQRvaIAraL~~~P~lLlLDEPT 256 (607)
T 3bk7_A 188 LPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL---DRELHQL-----SGGE---LQRVAIAAALLRKAHFYFFDEPS 256 (607)
T ss_dssp GGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGG---GSBGGGC-----CHHH---HHHHHHHHHHHSCCSEEEEECTT
T ss_pred chhhccccHHHHhhhhHHHHHHHHHHHHcCCCchh---CCChhhC-----CHHH---HHHHHHHHHHhcCCCEEEEECCc
Confidence 00 000 0011123344567777876544 7789999 9999 999999 999999999999999
Q ss_pred CCcccCCchhhhce
Q psy2657 134 SGSFTIEPRLQRHF 147 (163)
Q Consensus 134 ~g~~~l~~~~~~~~ 147 (163)
++ ||+..+..+
T Consensus 257 s~---LD~~~~~~l 267 (607)
T 3bk7_A 257 SY---LDIRQRLKV 267 (607)
T ss_dssp TT---CCHHHHHHH
T ss_pred cc---CCHHHHHHH
Confidence 99 998865443
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.75 E-value=3e-20 Score=152.50 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=86.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec--CCCC----HHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN--FYTS----SEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
++|.+.+||+++|+||||||||||+|+++|.++| |+|.+. ..+. .+.. .......+...... . + .
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~---~-~--~ 377 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDAS---K-L--N 377 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHH---H-H--T
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhcc---C-C--C
Confidence 3677899999999999999999999999999766 877652 1111 1110 00111111110000 0 0 1
Q ss_pred CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
..+.+..+++.+++... .++++.+| |+|+ +||+++ +++.+|+++++||||+| ||+..+..+..
T Consensus 378 ~~~~~~~~l~~~~l~~~---~~~~~~~L-----SGGe---~qrv~lAraL~~~p~lLlLDEPt~~---LD~~~~~~i~~ 442 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDL---YDREVNEL-----SGGE---LQRVAIAATLLRDADIYLLDEPSAY---LDVEQRLAVSR 442 (538)
T ss_dssp CHHHHHHTTTTTTCGGG---TTSBGGGC-----CHHH---HHHHHHHHHHTSCCSEEEEECTTTT---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhh---hcCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCccc---CCHHHHHHHHH
Confidence 11223345677777543 37889999 9999 999998 89999999999999999 99887655543
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.6e-22 Score=165.00 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=81.9
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeee------ecCCCCHHHHHHHHhccccc------cCC---
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVP------FNFYTSSEMLQKVLEKPLEK------KAG--- 66 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~------~~~~~~~~~~~~~~~~~~~~------~~~--- 66 (163)
.+++||+++|+||||||||||+|+++|.++| |++...... +................... ...
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 5689999999999999999999999999876 665210000 00000000111111110000 000
Q ss_pred ce----------ec---CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEec
Q psy2657 67 RN----------FG---PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMN 131 (163)
Q Consensus 67 ~~----------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~de 131 (163)
.+ .. ....+++..+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++||
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~L-----SgGe---~Qrv~iAraL~~~p~llllDE 247 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL---KRDIEKL-----SGGE---LQRFAIGMSCVQEADVYMFDE 247 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGG---GSCTTTC-----CHHH---HHHHHHHHHHHSCCSEEEEEC
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchh---CCChHHC-----CHHH---HHHHHHHHHHHhCCCEEEEEC
Confidence 00 00 00112334556677775544 7778888 9999 999999 8999999999999
Q ss_pred CCCCcccCCchhhhceeE
Q psy2657 132 PTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 132 P~~g~~~l~~~~~~~~~~ 149 (163)
||++ ||+..+..+..
T Consensus 248 Pts~---LD~~~~~~l~~ 262 (608)
T 3j16_B 248 PSSY---LDVKQRLNAAQ 262 (608)
T ss_dssp TTTT---CCHHHHHHHHH
T ss_pred cccC---CCHHHHHHHHH
Confidence 9999 99876655433
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.75 E-value=2.4e-20 Score=154.77 Aligned_cols=127 Identities=9% Similarity=0.083 Sum_probs=85.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec--CCCC----HHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN--FYTS----SEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
++|++.+||+++|+||||||||||+|+++|.++| |+|.+. ..+. .+.. .......+...... . + .
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~---~-~--~ 447 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSS---K-L--N 447 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHH---H-H--H
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhcc---C-C--C
Confidence 3567899999999999999999999999999766 877652 1111 1110 00011111110000 0 0 0
Q ss_pred CCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
..+.+..+++.+++.+.. ++++.+| |+|| +||+++ +++.+|+++++||||++ ||+..+..+.
T Consensus 448 ~~~~~~~~l~~~~l~~~~---~~~~~~L-----SGGe---~QRv~iAraL~~~p~lLlLDEPt~~---LD~~~~~~l~ 511 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLY---DRNVEDL-----SGGE---LQRVAIAATLLRDADIYLLDEPSAY---LDVEQRLAVS 511 (607)
T ss_dssp CHHHHHHTHHHHTCTTTT---TSBGGGC-----CHHH---HHHHHHHHHHTSCCSEEEEECTTTT---CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHh---cCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEeCCccC---CCHHHHHHHH
Confidence 112233456677775433 7889999 9999 999998 89999999999999999 9988765554
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.6e-21 Score=160.46 Aligned_cols=126 Identities=12% Similarity=0.141 Sum_probs=80.5
Q ss_pred CcccccCC-----ccEEEEcCCCCcHHHHHHHHHhcCCC--CCee------eeeeeecCCCCHHHHHHHHhccccccCCc
Q psy2657 1 MNLFIPKR-----KPVMLIGNAGSGKSILINKMLSSLPP--ETYA------LTSVPFNFYTSSEMLQKVLEKPLEKKAGR 67 (163)
Q Consensus 1 i~l~i~~g-----e~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (163)
++|++.+| |+++|+||||||||||+|+++|.++| |+.. +..+...........+ .+.... ...
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e-~~~~~~---~~~ 441 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ-LFFKKI---RGQ 441 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHH-HHHHHC---SST
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHH-HHHHHh---hcc
Confidence 35666666 88999999999999999999999876 5421 1111111111111111 111100 000
Q ss_pred eecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhh
Q psy2657 68 NFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQR 145 (163)
Q Consensus 68 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~ 145 (163)
....+....+++.+++.+.. ++++.+| |+|+ +||+++ +++.+|+++++||||+| ||+..+.
T Consensus 442 ---~~~~~~~~~~l~~l~l~~~~---~~~~~~L-----SGGq---kQRv~iAraL~~~p~lLlLDEPT~g---LD~~~~~ 504 (608)
T 3j16_B 442 ---FLNPQFQTDVVKPLRIDDII---DQEVQHL-----SGGE---LQRVAIVLALGIPADIYLIDEPSAY---LDSEQRI 504 (608)
T ss_dssp ---TTSHHHHHHTHHHHTSTTTS---SSBSSSC-----CHHH---HHHHHHHHHTTSCCSEEEECCTTTT---CCHHHHH
T ss_pred ---cccHHHHHHHHHHcCChhhh---cCChhhC-----CHHH---HHHHHHHHHHHhCCCEEEEECCCCC---CCHHHHH
Confidence 00111122345566775443 7889999 9999 999998 89999999999999999 9987665
Q ss_pred ce
Q psy2657 146 HF 147 (163)
Q Consensus 146 ~~ 147 (163)
.+
T Consensus 505 ~i 506 (608)
T 3j16_B 505 IC 506 (608)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.74 E-value=2.9e-20 Score=152.49 Aligned_cols=125 Identities=11% Similarity=0.110 Sum_probs=81.4
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCee-----------eeeeeecCCCCHHHHHHHHhcccc---------
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYA-----------LTSVPFNFYTSSEMLQKVLEKPLE--------- 62 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~-----------~~~~~~~~~~~~~~~~~~~~~~~~--------- 62 (163)
+++||+++|+||||||||||+|+++|.++| |++. +.|.++ ....+........
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i-----~~~~~~~~~~~~~~~~~~~~~~ 96 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEI-----YNYFKELYSNELKIVHKIQYVE 96 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTT-----HHHHHHHHTTCCCEEEECSCTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeH-----HHHHHHHhhcccchhhccchhh
Confidence 479999999999999999999999999776 6652 222111 1111111110000
Q ss_pred ccC----Cc----eecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecC
Q psy2657 63 KKA----GR----NFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNP 132 (163)
Q Consensus 63 ~~~----~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP 132 (163)
... +. +......++...+++.+++.... ++++.+| |+|+ +||+++ +++.+|+++++|||
T Consensus 97 ~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~---~~~~~~L-----SgGe---~Qrv~iA~aL~~~p~illlDEP 165 (538)
T 3ozx_A 97 YASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW---NKDANIL-----SGGG---LQRLLVAASLLREADVYIFDQP 165 (538)
T ss_dssp GGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGT---TSBGGGC-----CHHH---HHHHHHHHHHHSCCSEEEEEST
T ss_pred hhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhh---cCChhhC-----CHHH---HHHHHHHHHHHcCCCEEEEECC
Confidence 000 00 00011122333456667775443 7788899 9999 999999 99999999999999
Q ss_pred CCCcccCCchhhhcee
Q psy2657 133 TSGSFTIEPRLQRHFY 148 (163)
Q Consensus 133 ~~g~~~l~~~~~~~~~ 148 (163)
|++ ||+..+..+.
T Consensus 166 ts~---LD~~~~~~l~ 178 (538)
T 3ozx_A 166 SSY---LDVRERMNMA 178 (538)
T ss_dssp TTT---CCHHHHHHHH
T ss_pred ccc---CCHHHHHHHH
Confidence 999 9987655443
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.70 E-value=8e-20 Score=162.66 Aligned_cols=134 Identities=9% Similarity=0.127 Sum_probs=86.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh--ccccccC-----CceecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE--KPLEKKA-----GRNFGP 71 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~ 71 (163)
+||+|++||.++||||||||||||++.+++.++| |+|.++|.+++..+.....+.+-. +....+. +..|+.
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gl 1177 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGL 1177 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccC
Confidence 5899999999999999999999999999999876 999999999987765443332100 0000000 011111
Q ss_pred --CC--CceEEEEEecCCCCC-----CcCCC---CCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcc
Q psy2657 72 --PG--NKTMIYFVDDMNMPE-----VDAYG---TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSF 137 (163)
Q Consensus 72 --~~--~~~~~~~l~~~~l~~-----~~~~~---~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~ 137 (163)
.. .+++...++..++.+ .+.+. ...-..| |+|| |||+++ |++.+|+++++||||++
T Consensus 1178 d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~L-----SgGQ---rQriaiARAllr~~~ILiLDEaTSa-- 1247 (1321)
T 4f4c_A 1178 DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQL-----SGGQ---KQRIAIARALVRNPKILLLDEATSA-- 1247 (1321)
T ss_dssp CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSS-----CHHH---HHHHHHHHHHHSCCSEEEEESCCCS--
T ss_pred CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCccc-----CHHH---HHHHHHHHHHHhCCCEEEEeCcccc--
Confidence 10 111222222222211 01110 1111235 9999 999999 99999999999999999
Q ss_pred cCCchhhh
Q psy2657 138 TIEPRLQR 145 (163)
Q Consensus 138 ~l~~~~~~ 145 (163)
||+..-+
T Consensus 1248 -LD~~tE~ 1254 (1321)
T 4f4c_A 1248 -LDTESEK 1254 (1321)
T ss_dssp -TTSHHHH
T ss_pred -CCHHHHH
Confidence 9976543
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.69 E-value=9.1e-19 Score=147.05 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=44.4
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceE--EEEEecCCCCcccCCchhhhceeEE
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM--FVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~--~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
++.+++... ..++++.+| |+|| +||+++ +++.+|+ ++++||||+| ||+.....+..+
T Consensus 186 l~~~gL~~~--~~~~~~~~L-----SGGe---~QRv~iArAL~~~p~~~lLlLDEPtsg---LD~~~~~~l~~~ 246 (670)
T 3ux8_A 186 LQNVGLDYL--TLSRSAGTL-----SGGE---AQRIRLATQIGSRLTGVLYVLDEPSIG---LHQRDNDRLIAT 246 (670)
T ss_dssp HHHTTCTTC--CTTCBGGGS-----CHHH---HHHHHHHHHHHTCCCSCEEEEECTTTT---CCGGGHHHHHHH
T ss_pred HHHcCCchh--hhcCCcccC-----CHHH---HHHHHHHHHHhhCCCCCEEEEECCccC---CCHHHHHHHHHH
Confidence 444555432 126778899 9999 999999 8888988 9999999999 999877665433
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.68 E-value=1.3e-19 Score=160.98 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=87.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCC-----ceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAG-----RNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~ 70 (163)
+||++++||.++|+||||||||||+++++|.++| |+|.++|.++...+.....+ .+....+. ..+ ..++
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~-~i~~v~Q~~~l~~~ti~eNi~~g 487 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE-IIGVVSQEPVLFATTIAENIRYG 487 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH-HEEEECSSCCCCSSCHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh-heEEEcCCCccCCccHHHHHhcC
Confidence 5899999999999999999999999999999877 99999999987765443322 22111110 000 0111
Q ss_pred CCC--CceEEEEEecCC-------CCC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PPG--NKTMIYFVDDMN-------MPE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~~--~~~~~~~l~~~~-------l~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+. .+.+...++..+ ++. .+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L-----SgGq---~QriaiARal~~~p~iliLDEpts~--- 556 (1284)
T 3g5u_A 488 REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL-----SGGQ---KQRIAIARALVRNPKILLLDEATSA--- 556 (1284)
T ss_dssp CSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSS-----CHHH---HHHHHHHHHHHHCCSEEEEESTTCS---
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCcc-----CHHH---HHHHHHHHHHhcCCCEEEEECCCCC---
Confidence 110 001111111111 111 111112334456 9999 999999 99999999999999999
Q ss_pred CCchhhhce
Q psy2657 139 IEPRLQRHF 147 (163)
Q Consensus 139 l~~~~~~~~ 147 (163)
||+...+.+
T Consensus 557 LD~~~~~~i 565 (1284)
T 3g5u_A 557 LDTESEAVV 565 (1284)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 998765544
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.67 E-value=9.9e-19 Score=155.68 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=87.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc--------cCCceec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK--------KAGRNFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 70 (163)
+||++++|+.++|+||||||||||++.++|.++| |+|.++|.++...+....... +....+. +.+..|+
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~-i~~v~Q~~~Lf~~TI~eNI~~g 515 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN-VAVVSQEPALFNCTIEENISLG 515 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH-EEEECSSCCCCSEEHHHHHHTT
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc-ccccCCcceeeCCchhHHHhhh
Confidence 5899999999999999999999999999999877 999999999887765444332 2111110 0011122
Q ss_pred CCC--CceEEEEEecCC-------CCCC-cCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCccc
Q psy2657 71 PPG--NKTMIYFVDDMN-------MPEV-DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFT 138 (163)
Q Consensus 71 ~~~--~~~~~~~l~~~~-------l~~~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~ 138 (163)
.+. .+++...++..+ +|+- +...-..-..| |+|| |||+++ |+..+|+++++||||++
T Consensus 516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~L-----SGGQ---kQRiaiARAl~~~~~IliLDE~tSa--- 584 (1321)
T 4f4c_A 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL-----SGGQ---KQRIAIARALVRNPKILLLDEATSA--- 584 (1321)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCC-----CHHH---HHHHHHHHHHTTCCSEEEEESTTTT---
T ss_pred cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCC-----CHHH---HHHHHHHHHHccCCCEEEEeccccc---
Confidence 211 111111111111 1110 00001112235 9999 999999 99999999999999999
Q ss_pred CCchhhhce
Q psy2657 139 IEPRLQRHF 147 (163)
Q Consensus 139 l~~~~~~~~ 147 (163)
||+...+.+
T Consensus 585 LD~~te~~i 593 (1321)
T 4f4c_A 585 LDAESEGIV 593 (1321)
T ss_dssp SCTTTHHHH
T ss_pred CCHHHHHHH
Confidence 998765443
No 58
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.67 E-value=3.7e-19 Score=158.04 Aligned_cols=136 Identities=13% Similarity=0.205 Sum_probs=84.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccc---cCCc-----eec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEK---KAGR-----NFG 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~ 70 (163)
+||++++||+++|+||||||||||+++++|.++| |+|.++|.+++..+.... +..+....+. .... .++
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL-RAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHH-TTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHH-HhceEEECCCCccccccHHHHHhcc
Confidence 6899999999999999999999999999999876 999999998876543221 1111100000 0000 000
Q ss_pred CCC----CceEEEEEecCCC-------CC-CcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCc
Q psy2657 71 PPG----NKTMIYFVDDMNM-------PE-VDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGS 136 (163)
Q Consensus 71 ~~~----~~~~~~~l~~~~l-------~~-~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~ 136 (163)
... .+.+...++..++ ++ .+........+| |+|| |||+++ +++.+|+++++||||++
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L-----SgGq---~Qrv~iARal~~~p~iLiLDEpTs~- 1201 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL-----SGGQ---KQRIAIARALVRQPHILLLDEATSA- 1201 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS-----CHHH---HHHHHHHHHHHHCCSSEEEESCSSS-
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc-----CHHH---HHHHHHHHHHHcCCCEEEEeCCccc-
Confidence 000 0000001111111 10 011111223356 9999 999999 99999999999999999
Q ss_pred ccCCchhhhcee
Q psy2657 137 FTIEPRLQRHFY 148 (163)
Q Consensus 137 ~~l~~~~~~~~~ 148 (163)
||+...+.+.
T Consensus 1202 --lD~~~~~~i~ 1211 (1284)
T 3g5u_A 1202 --LDTESEKVVQ 1211 (1284)
T ss_dssp --CCHHHHHHHH
T ss_pred --CCHHHHHHHH
Confidence 9987665543
No 59
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.4e-19 Score=142.50 Aligned_cols=123 Identities=10% Similarity=0.100 Sum_probs=83.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--C-C-eeeeeeeecCCCCHHHHHHH----HhccccccCCceec--
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--E-T-YALTSVPFNFYTSSEMLQKV----LEKPLEKKAGRNFG-- 70 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g-~-i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-- 70 (163)
++|.+++|++++|+||||||||||+|+++|...+ | + +.+++.. . .......+.. +...+.... ..++
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~-~-~~i~~vpq~~~l~~~~~~~tv~e-ni~~~~ 207 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDP-Q-QPIFTVPGCISATPISDILDAQL-PTWGQS 207 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCT-T-SCSSSCSSCCEEEECCSCCCTTC-TTCSCB
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCc-c-CCeeeeccchhhcccccccchhh-hhcccc
Confidence 4688999999999999999999999999999765 8 8 8888721 0 0000000000 000000000 0111
Q ss_pred ----CCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--E--eecceEE----EEEec-CCCCcc
Q psy2657 71 ----PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--K--DIHNIMF----VSAMN-PTSGSF 137 (163)
Q Consensus 71 ----~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~--~~~~~~~----i~~de-P~~g~~ 137 (163)
....+++..+++.+++.... + +.+| |+|+ +||+++ + ++.+|++ +++|| |+++
T Consensus 208 ~~~~~~~~~~~~~ll~~~gl~~~~---~--~~~L-----SgGq---~qrlalAra~rL~~~p~i~~sGLlLDEpPts~-- 272 (460)
T 2npi_A 208 LTSGATLLHNKQPMVKNFGLERIN---E--NKDL-----YLEC---ISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQ-- 272 (460)
T ss_dssp CBSSCCSSCCBCCEECCCCSSSGG---G--CHHH-----HHHH---HHHHHHHHHHHHHHCHHHHHSCEEEECCCGGG--
T ss_pred cccCcchHHHHHHHHHHhCCCccc---c--hhhh-----hHHH---HHHHHHHHHHHhccCcccCcceEEEeCCcccc--
Confidence 11224455678888886543 3 7788 9999 999998 7 8899999 99999 9999
Q ss_pred cCCch
Q psy2657 138 TIEPR 142 (163)
Q Consensus 138 ~l~~~ 142 (163)
||+.
T Consensus 273 -LD~~ 276 (460)
T 2npi_A 273 -LDEN 276 (460)
T ss_dssp -SCSS
T ss_pred -cChh
Confidence 8876
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=3.6e-19 Score=153.36 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=37.2
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTS 41 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~ 41 (163)
+||++.+|++++|+||||||||||+|+++|.++| |+|++++
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 5789999999999999999999999999999876 8887764
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=4.5e-17 Score=118.72 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=63.3
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEe
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVD 82 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (163)
+++|++++|+||||||||||+++++|. +| |+|.. .++..... ......+.+++.. ...+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~----------~~~~~ig~v~q~~-----~enl~ 80 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAV----------EAGEKLGFLPGTL-----NEKID 80 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSC----------CTTCCCCSSCC-----------C
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCch----------hhhcceEEecCCH-----HHHHH
Confidence 478999999999999999999999999 66 77743 22221100 0000111111111 00010
Q ss_pred cC------CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 83 DM------NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 83 ~~------~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
.+ .+... .....+.+++.+ ..|| +||+++ +++.+|+++++||||++
T Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~l~~--glGq---~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 81 PYLRPLHDALRDM--VEPEVIPKLMEA--GIVE---VAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp TTTHHHHHHHTTT--SCTTHHHHHHHT--TSEE---EEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHHHHh--ccHHHHHHHHHh--CCch---HHHHHHHHHHhcCCCEEEEeCCccc
Confidence 00 00000 112335566655 4588 999998 99999999999999998
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.63 E-value=9.9e-19 Score=150.66 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=81.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHh-cCC----CCCe--eeeeeee-cCCCCHHHHHHHHhccccccCCceecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLS-SLP----PETY--ALTSVPF-NFYTSSEMLQKVLEKPLEKKAGRNFGPP 72 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~-~~~----~g~i--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (163)
+||++.+|++++|+||||||||||+|+|+| .+. +..+ .+..++. .......... .+.. . .++.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e-~l~~---~----~~~~- 524 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLD-FVFE---S----GVGT- 524 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHH-HHHT---T----CSSC-
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHH-HHHH---h----hcCH-
Confidence 588999999999999999999999999985 221 1111 1101111 0000001111 1110 0 0111
Q ss_pred CCceEEEEEecCCCC-CCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCchhhhceeE
Q psy2657 73 GNKTMIYFVDDMNMP-EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 73 ~~~~~~~~l~~~~l~-~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
.+++...++.+++. ... ++++.+| |+|| |||+++ +++.+|+++++||||++ ||+..+..+..
T Consensus 525 -~~~v~~~L~~lgL~~~~~---~~~~~~L-----SGGq---kQRvaLArAL~~~P~lLLLDEPTs~---LD~~~~~~l~~ 589 (986)
T 2iw3_A 525 -KEAIKDKLIEFGFTDEMI---AMPISAL-----SGGW---KMKLALARAVLRNADILLLDEPTNH---LDTVNVAWLVN 589 (986)
T ss_dssp -HHHHHHHHHHTTCCHHHH---HSBGGGC-----CHHH---HHHHHHHHHHHTTCSEEEEESTTTT---CCHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCChhhh---cCCcccC-----CHHH---HHHHHHHHHHhcCCCEEEEECCccC---CCHHHHHHHHH
Confidence 23344567777874 222 5678888 9999 999998 99999999999999999 99988776644
Q ss_pred E
Q psy2657 150 F 150 (163)
Q Consensus 150 ~ 150 (163)
+
T Consensus 590 ~ 590 (986)
T 2iw3_A 590 Y 590 (986)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.59 E-value=7.1e-18 Score=119.26 Aligned_cols=27 Identities=52% Similarity=0.769 Sum_probs=25.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINK 27 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~ 27 (163)
+||++++||+++|+||||||||||++.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHH
Confidence 589999999999999999999999995
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.59 E-value=6.3e-18 Score=141.96 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeecce---EEEEEecCCCCcccCCchhhhceeEE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI---MFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~---~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
++++.+| |+|| +||+++ +++.+| +++++||||+| ||+.....+..+
T Consensus 538 ~~~~~~L-----SgG~---~qrv~iAraL~~~p~~p~llllDEPt~~---LD~~~~~~i~~~ 588 (670)
T 3ux8_A 538 GQPATTL-----SGGE---AQRVKLAAELHRRSNGRTLYILDEPTTG---LHVDDIARLLDV 588 (670)
T ss_dssp TCCGGGC-----CHHH---HHHHHHHHHHHSCCCSCEEEEEESTTTT---CCHHHHHHHHHH
T ss_pred cCCchhC-----CHHH---HHHHHHHHHHhhCCCCCcEEEEeCCCCC---CCHHHHHHHHHH
Confidence 5678888 9999 999999 776665 69999999999 998877665443
No 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.55 E-value=6.9e-17 Score=128.46 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=74.4
Q ss_pred CcccccCCc--------------------cEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHh
Q psy2657 1 MNLFIPKRK--------------------PVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLE 58 (163)
Q Consensus 1 i~l~i~~ge--------------------~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~ 58 (163)
+++.+++|+ +++|+||||||||||+|+++|..+| |++.+++.+.+..
T Consensus 42 is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~----------- 110 (413)
T 1tq4_A 42 IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME----------- 110 (413)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-----------
T ss_pred ccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-----------
Confidence 467888999 9999999999999999999998765 8888887654210
Q ss_pred ccccccCCceecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHH----------HhcC--CceecCCcce--Eeec--
Q psy2657 59 KPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQY----------MDYQ--HWYDRQKLSL--KDIH-- 122 (163)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~----------~s~g--~~~~~~~~~~--~~~~-- 122 (163)
+.++...... -..+.|..++... ...+.+++... +|+| + +|++++ ++..
T Consensus 111 -------~~v~q~~~~~-~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~~~~~~lS~G~~~---kqrv~la~aL~~~~ 175 (413)
T 1tq4_A 111 -------RHPYKHPNIP-NVVFWDLPGIGST----NFPPDTYLEKMKFYEYDFFIIISATRFK---KNDIDIAKAISMMK 175 (413)
T ss_dssp -------CEEEECSSCT-TEEEEECCCGGGS----SCCHHHHHHHTTGGGCSEEEEEESSCCC---HHHHHHHHHHHHTT
T ss_pred -------EEeccccccC-CeeehHhhcccch----HHHHHHHHHHcCCCccCCeEEeCCCCcc---HHHHHHHHHHHhcC
Confidence 1111111100 1123333333211 22344444432 4667 6 777776 5666
Q ss_pred --------ceEEEEEecCCCCcccCCchhhhce
Q psy2657 123 --------NIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 123 --------~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
+|+++++|||++| +|+..+..+
T Consensus 176 ~p~~lV~tkpdlllLDEPtsg---LD~~~~~~l 205 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGE---PQTFDKEKV 205 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTC---CTTCCHHHH
T ss_pred CCeEEEEecCcccccCccccc---CCHHHHHHH
Confidence 8999999999999 988766544
No 66
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.54 E-value=3.1e-16 Score=120.73 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=67.7
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC--C--CeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEE
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP--E--TYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYF 80 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (163)
+++|++++|+||||||||||++++.|.+++ | .+.+-.++... ....... .+.. .. . .........+.+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~-~~~t~~e-~~~~-~~-~-~g~~~~~d~~~~~~~ 161 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL-YPNAELQ-RRNL-MH-R-KGFPESYNRRALMRF 161 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB-CCHHHHH-HTTC-TT-C-TTSGGGBCHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC-CcccHHH-HHHH-HH-h-cCCChHHHHHHHHHH
Confidence 789999999999999999999999998654 4 23222222111 2222222 1110 00 0 011111111222334
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g 135 (163)
++.++ .... +.++.++ |+|+ +|++++ +++.+|+++++|||+..
T Consensus 162 L~~l~-~~~~---~~~~~~l-----S~G~---~qRv~~a~al~~~p~ilIlDep~~~ 206 (312)
T 3aez_A 162 VTSVK-SGSD---YACAPVY-----SHLH---YDIIPGAEQVVRHPDILILEGLNVL 206 (312)
T ss_dssp HHHHH-TTCS---CEEEEEE-----ETTT---TEEEEEEEEEECSCSEEEEECTTTT
T ss_pred HHHhC-CCcc---cCCcccC-----Chhh---hhhhhhHHHhccCCCEEEECCcccc
Confidence 44443 1111 3345566 9999 999887 88899999999999988
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.54 E-value=1.6e-15 Score=116.21 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=78.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecCCCCHHHHHHH---HhccccccCCc-e------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNFYTSSEMLQKV---LEKPLEKKAGR-N------ 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~------ 68 (163)
++|.+++|++++|+|||||||||+++.++|.+. .|+|.+.+.+............. ..-.+...... .
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v 172 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 172 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH
Confidence 467889999999999999999999999999864 48999988765332110111110 00000000000 0
Q ss_pred -----ecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceE--EEEEecCCCCcccC
Q psy2657 69 -----FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM--FVSAMNPTSGSFTI 139 (163)
Q Consensus 69 -----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~--~i~~deP~~g~~~l 139 (163)
+... ...-..++|.+++.+.. +..+.|| | +|++++ +++.+|+ ++++| |++| +
T Consensus 173 ~e~l~~~~~-~~~d~~lldt~gl~~~~---~~~~~eL-----S------kqr~~iaral~~~P~e~lLvLD-ptsg---l 233 (302)
T 3b9q_A 173 SKAVKRGKE-EGYDVVLCDTSGRLHTN---YSLMEEL-----I------ACKKAVGKIVSGAPNEILLVLD-GNTG---L 233 (302)
T ss_dssp HHHHHHHHH-TTCSEEEECCCCCSSCC---HHHHHHH-----H------HHHHHHHTTSTTCCSEEEEEEE-GGGG---G
T ss_pred HHHHHHHHH-cCCcchHHhcCCCCcch---hHHHHHH-----H------HHHHHHHHhhccCCCeeEEEEe-CCCC---c
Confidence 0000 01123577888886544 6678888 7 456665 7888999 99999 9999 7
Q ss_pred Cchhh
Q psy2657 140 EPRLQ 144 (163)
Q Consensus 140 ~~~~~ 144 (163)
|+..+
T Consensus 234 D~~~~ 238 (302)
T 3b9q_A 234 NMLPQ 238 (302)
T ss_dssp GGHHH
T ss_pred CHHHH
Confidence 76543
No 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.53 E-value=3.1e-16 Score=111.68 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=69.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEV 89 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 89 (163)
.++|+||||||||||+++++|.+. +.++|.......... ....+ +.++....... .++..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~---i~~~g~~~~~~~~~~-~~~~i--------g~~~~~~~~~~--~~~~~~~~~~- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPE-TKKRT--------GFRIITTEGKK--KIFSSKFFTS- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG---GGEEEEEEEEEC-------CC--------EEEEEETTCCE--EEEEETTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcCCCEEhhhhcccc-cccee--------EEEeecCcHHH--HHHHhhcCCc-
Confidence 589999999999999999999874 667776542211000 00000 01111111111 1123333221
Q ss_pred cCCCCCCHHHHHHHHHhcCCceecCCcce--E-----eecceEEEEEec--CCCCcccCCchhhhcee
Q psy2657 90 DAYGTVQPHTVIRQYMDYQHWYDRQKLSL--K-----DIHNIMFVSAMN--PTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 90 ~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~-----~~~~~~~i~~de--P~~g~~~l~~~~~~~~~ 148 (163)
+...++++.++ |+|+ +|++++ + ++.+|+++++|| |+++ +|+.+.+.+.
T Consensus 67 ~~~~~~~~~~l-----SgG~---~qr~~la~aa~~~~l~~~p~llilDEigp~~~---ld~~~~~~l~ 123 (178)
T 1ye8_A 67 KKLVGSYGVNV-----QYFE---ELAIPILERAYREAKKDRRKVIIIDEIGKMEL---FSKKFRDLVR 123 (178)
T ss_dssp SSEETTEEECH-----HHHH---HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG---GCHHHHHHHH
T ss_pred cccccccccCc-----CHHH---HHHHHHHhhccccccccCCCEEEEeCCCCccc---CCHHHHHHHH
Confidence 11225567778 9999 999988 4 688999999999 9999 9887765543
No 69
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.49 E-value=4e-15 Score=116.41 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=79.3
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecCCCCHHHHHHH---HhccccccCCc-e------
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNFYTSSEMLQKV---LEKPLEKKAGR-N------ 68 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~------ 68 (163)
++|.+++|++++|+|||||||||+++.+++.++ .|+|.+.+.++........+... ..-.+...... .
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv 229 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 229 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhH
Confidence 467889999999999999999999999999864 48999988765322110111110 00000000000 0
Q ss_pred -----ecCCCCceEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceE--EEEEecCCCCcccC
Q psy2657 69 -----FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM--FVSAMNPTSGSFTI 139 (163)
Q Consensus 69 -----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~--~i~~deP~~g~~~l 139 (163)
+... ...-..++|.+++.+.. ++.+.|| | +|++++ +++.+|+ ++++| |++| +
T Consensus 230 ~e~l~~~~~-~~~d~~lldt~Gl~~~~---~~~~~eL-----S------kqr~~iaral~~~P~e~lLvLD-pttg---l 290 (359)
T 2og2_A 230 SKAVKRGKE-EGYDVVLCDTSGRLHTN---YSLMEEL-----I------ACKKAVGKIVSGAPNEILLVLD-GNTG---L 290 (359)
T ss_dssp HHHHHHHHH-TTCSEEEEECCCCSSCC---HHHHHHH-----H------HHHHHHHHHSTTCCSEEEEEEE-GGGG---G
T ss_pred HHHHHHHHh-CCCHHHHHHhcCCChhh---hhHHHHH-----H------HHHHHHHHHHhcCCCceEEEEc-CCCC---C
Confidence 0000 01123577888886554 6677888 7 556666 7888999 99999 9999 7
Q ss_pred Cchhh
Q psy2657 140 EPRLQ 144 (163)
Q Consensus 140 ~~~~~ 144 (163)
|+..+
T Consensus 291 D~~~~ 295 (359)
T 2og2_A 291 NMLPQ 295 (359)
T ss_dssp GGHHH
T ss_pred CHHHH
Confidence 76543
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.46 E-value=7.8e-16 Score=117.96 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=67.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYF 80 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (163)
+||.+++|++++|+||||||||||+++++|.+ .|+|...... .. . .+...... ....+.+...+.+..+
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q----~~-~----lf~~ti~~-~ni~~~~~~~~~~~~~ 187 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANH----KS-H----FWLASLAD-TRAALVDDATHACWRY 187 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGT----TS-G----GGGGGGTT-CSCEEEEEECHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecC----cc-c----cccccHHH-HhhccCccccHHHHHH
Confidence 47899999999999999999999999999998 7877432211 00 0 00000000 0011110000000011
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
++.+ ++.. + + ..+| |+|+ ||| +.+++.+|++++ |++ ||+.....+.
T Consensus 188 i~~~-L~~g--l-d--g~~L-----SgGq---kQR-ARAll~~p~iLl----Ts~---LD~~~~~~i~ 233 (305)
T 2v9p_A 188 FDTY-LRNA--L-D--GYPV-----SIDR---KHK-AAVQIKAPPLLV----TSN---IDVQAEDRYL 233 (305)
T ss_dssp HHHT-TTGG--G-G--TCCE-----ECCC---SSC-CCCEECCCCEEE----EES---SCSTTCGGGG
T ss_pred HHHH-hHcc--C-C--ccCc-----CHHH---HHH-HHHHhCCCCEEE----ECC---CCHHHHHHHH
Confidence 1111 1110 0 1 2234 9999 999 889999999999 888 8887766554
No 71
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.45 E-value=2.7e-14 Score=107.84 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=54.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMP 87 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 87 (163)
.++|+||||||||||+|+++|...| |++.++|.++...... ...+.++....-..-..+.|.+++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~------------~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI------------KAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC------------CEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee------------eeeEEEeecCCCcCCceEEechhhh
Confidence 4899999999999999999998544 8898888765322100 0000111111111123445555543
Q ss_pred CCcC--CCCCCHHHHH--------HHHHhcCCceecCCcceEeecceEEEEEecCCCC
Q psy2657 88 EVDA--YGTVQPHTVI--------RQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG 135 (163)
Q Consensus 88 ~~~~--~~~~~~~ell--------r~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g 135 (163)
.... .....+.+++ ..-+|+|+ +|+++++.+ .+.++++|||+.|
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~---~qrv~iaRa-l~~lllldep~~g 125 (270)
T 3sop_A 72 DQINNENCWEPIEKYINEQYEKFLKEEVNIAR---KKRIPDTRV-HCCLYFISPTGHS 125 (270)
T ss_dssp CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTC---CSSCCCCSC-CEEEEEECCCSSS
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHhcCccc---chhhhhhee-eeeeEEEecCCCc
Confidence 2110 0011122222 22368999 999998544 3459999999998
No 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.45 E-value=7.8e-16 Score=132.17 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeecc---eEEEEEecCCCCcccCCchhhhceeE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN---IMFVSAMNPTSGSFTIEPRLQRHFYV 149 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~---~~~i~~deP~~g~~~l~~~~~~~~~~ 149 (163)
++++.+| |+|+ +||+++ +++.+ |+++++||||+| ||+..++.+..
T Consensus 840 ~~~~~~L-----SGGe---kQRv~LAraL~~~p~~p~lLILDEPTsG---LD~~~~~~l~~ 889 (972)
T 2r6f_A 840 GQPATTL-----SGGE---AQRVKLAAELHRRSNGRTLYILDEPTTG---LHVDDIARLLD 889 (972)
T ss_dssp TCCGGGC-----CHHH---HHHHHHHHHHSSCCCSCEEEEEECTTTT---CCHHHHHHHHH
T ss_pred cCchhhC-----CHHH---HHHHHHHHHHhcCCCCCCEEEEECCCCC---CCHHHHHHHHH
Confidence 5677888 9999 999998 67765 599999999999 99887766543
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.43 E-value=2.1e-15 Score=129.92 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeecc---eEEEEEecCCCCcccCCchhhhcee
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN---IMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~---~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
++++.+| |+|+ +||+++ +++.+ |+++++||||+| ||+...+.+.
T Consensus 858 ~~~~~~L-----SGGe---kQRv~LAraL~~~p~~p~lLILDEPTsG---LD~~~~~~l~ 906 (993)
T 2ygr_A 858 GQPAPTL-----SGGE---AQRVKLASELQKRSTGRTVYILDEPTTG---LHFDDIRKLL 906 (993)
T ss_dssp TCCGGGS-----CHHH---HHHHHHHHHHSSCCCSSEEEEEESTTTT---CCHHHHHHHH
T ss_pred cCccccC-----CHHH---HHHHHHHHHHHhCCCCCCEEEEECCCCC---CCHHHHHHHH
Confidence 5667777 9999 999998 67765 599999999999 9987766554
No 74
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.43 E-value=7.2e-17 Score=137.69 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=41.6
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--Eeecc---eEEEEEecCCCCcccCCchhhhcee
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN---IMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~---~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
++++++... ..++++.+| |+|+ +||+++ +++.+ |+++++||||+| ||+.....+.
T Consensus 714 L~~~gL~~~--~l~~~~~~L-----SGGe---kQRv~LAraL~~~p~~p~lLILDEPTsG---LD~~~~~~l~ 773 (842)
T 2vf7_A 714 LREVGLGYL--RLGQPATEL-----SGGE---AQRIKLATELRRSGRGGTVYVLDEPTTG---LHPADVERLQ 773 (842)
T ss_dssp HHHTTCTTS--BTTCCGGGC-----CHHH---HHHHHHHHTTSSCCSSCEEEEEECTTTT---CCHHHHHHHH
T ss_pred HHHcCCCcc--cccCCcccC-----CHHH---HHHHHHHHHHHhCCCCCCEEEEECCCCC---CCHHHHHHHH
Confidence 444555432 126778888 9999 999998 77775 799999999999 9987776553
No 75
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.40 E-value=3.9e-14 Score=109.83 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=37.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV 42 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~ 42 (163)
+++.+++|+.++|+||||||||||+++++|.++| |.+.+++.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 3678899999999999999999999999999776 77877764
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.40 E-value=8e-16 Score=122.17 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=32.6
Q ss_pred HhcCCceecCCcce--Eeecce--EEEEEecCCCCcccCCchhhhcee
Q psy2657 105 MDYQHWYDRQKLSL--KDIHNI--MFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 105 ~s~g~~~~~~~~~~--~~~~~~--~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
+|+|+ +|++++ +++.+| +++++|||++| ||+.....+.
T Consensus 296 lSgGe---~qrl~lA~~l~~~~~~~~LlLDEpt~~---LD~~~~~~l~ 337 (415)
T 4aby_A 296 ASGGE---LSRVMLAVSTVLGADTPSVVFDEVDAG---IGGAAAIAVA 337 (415)
T ss_dssp SCHHH---HHHHHHHHHHHHCCSSSEEEESSTTTT---CCHHHHHHHH
T ss_pred cCHhH---HHHHHHHHHHHhCCCCCEEEEECCCCC---CCHHHHHHHH
Confidence 39999 999988 778899 99999999999 9987765543
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.36 E-value=1.3e-12 Score=96.94 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+||++++|++++|+||||||||||++.+.+.+
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999999998865
No 78
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.34 E-value=1.9e-13 Score=95.44 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=38.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC-CCCeeeeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP-PETYALTSVPF 44 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-~g~i~~~~~~~ 44 (163)
+||++++|++++|+||||||||||+|+++|.++ .|+|.+++.++
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i 70 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL 70 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEee
Confidence 478999999999999999999999999999872 28888777554
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.31 E-value=1.4e-12 Score=95.40 Aligned_cols=42 Identities=29% Similarity=0.492 Sum_probs=32.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
+||.+++|++++|+||||||||||+++++|.++ |++.+ +.++
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~-g~~~ 57 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYF-SVSC 57 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEE-CCCE
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEE-eecc
Confidence 689999999999999999999999999999884 99888 6554
No 80
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.31 E-value=1.1e-14 Score=125.16 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeecc---eEEEEEecCCCCcccCCchhhhcee
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHN---IMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~---~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
.+++.+| |+|| +||+++ +++.+ |+++++||||+| ||+...+.+.
T Consensus 800 gq~~~~L-----SGGE---rQRV~LAraL~~~p~~p~LLILDEPTsG---LD~~~~~~L~ 848 (916)
T 3pih_A 800 GQPATTL-----SGGE---AQRIKLASELRKRDTGRTLYILDEPTVG---LHFEDVRKLV 848 (916)
T ss_dssp TCCSTTC-----CHHH---HHHHHHHHHHTSCCCSSEEEEEESTTTT---CCHHHHHHHH
T ss_pred cCCccCC-----CHHH---HHHHHHHHHHhhCCCCCCEEEEECCCCC---CCHHHHHHHH
Confidence 3455566 9999 999998 66655 589999999999 9987765543
No 81
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=3e-13 Score=104.40 Aligned_cols=43 Identities=9% Similarity=-0.022 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eee----cceEEEEEecCCCCcccCCchhhhce
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDI----HNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~----~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
+.++.++ |+|+ +|++++ +++ .+|+++++|||+++ ||+.....+
T Consensus 214 ~~~~~~l-----S~Gq---~q~v~ia~~l~~~~~~~~~~lllDEp~~~---LD~~~~~~l 262 (322)
T 1e69_A 214 DQKLSLL-----SGGE---KALVGLALLFALMEIKPSPFYVLDEVDSP---LDDYNAERF 262 (322)
T ss_dssp CCBGGGS-----CHHH---HHHHHHHHHHHHTTTSCCSEEEEESCCSS---CCHHHHHHH
T ss_pred cCchhhC-----CHHH---HHHHHHHHHHHHhccCCCCEEEEeCCCCC---CCHHHHHHH
Confidence 5567777 9999 999988 443 57899999999999 998765544
No 82
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.25 E-value=1.7e-12 Score=93.06 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=31.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC-CCCCeeeeeeee
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL-PPETYALTSVPF 44 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~-~~g~i~~~~~~~ 44 (163)
|++++|+||||||||||++.++|.+ ..| +.++|...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEec
Confidence 7899999999999999999999975 457 88888665
No 83
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.23 E-value=9.8e-13 Score=113.36 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=58.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEE
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYF 80 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (163)
++|.+++|++++|+|||||||||++|.+.+..-. .+ ........ ....+ .+..+
T Consensus 666 vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~------------------aq--~g~~vpa~-~~~i~-----~~d~i 719 (918)
T 3thx_B 666 TDLSEDSERVMIITGPNMGGKSSYIKQVALITIM------------------AQ--IGSYVPAE-EATIG-----IVDGI 719 (918)
T ss_dssp EEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH------------------HH--HTCCBSSS-EEEEE-----CCSEE
T ss_pred ccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH------------------hh--cCccccch-hhhhh-----HHHHH
Confidence 4678899999999999999999999987543100 00 00000000 00000 01124
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce-EeecceEEEEEecCCCCcccCCchhh
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL-KDIHNIMFVSAMNPTSGSFTIEPRLQ 144 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~-~~~~~~~~i~~deP~~g~~~l~~~~~ 144 (163)
+..+++.+.. ......+ +.++ +++..+ ..+.+|+++++|||++| +|+...
T Consensus 720 ~~~ig~~d~l---~~~~stf-----s~em---~~~~~il~~a~~p~LlLLDEP~~G---lD~~~~ 770 (918)
T 3thx_B 720 FTRMGAADNI---YKGRSTF-----MEEL---TDTAEIIRKATSQSLVILDELGRG---TSTHDG 770 (918)
T ss_dssp EEEC-------------CCH-----HHHH---HHHHHHHHHCCTTCEEEEESTTTT---SCHHHH
T ss_pred HHhCChHHHH---HHhHHHh-----hHHH---HHHHHHHHhccCCCEEEEeCCCCC---CCHHHH
Confidence 4555554322 2333344 6666 666555 44789999999999999 887543
No 84
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.20 E-value=7.9e-13 Score=103.77 Aligned_cols=46 Identities=7% Similarity=-0.047 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eee------cceEEEEEecCCCCcccCCchhhhceeEE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDI------HNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~------~~~~~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
++++.+| |+|+ +|++++ +++ .+|+++++||||++ ||+.....+..+
T Consensus 274 ~~~~~~L-----SgGe---~qr~~la~al~~~~~~~~~p~~lllDEpt~~---LD~~~~~~~~~~ 327 (365)
T 3qf7_A 274 ERPARGL-----SGGE---RALISISLAMSLAEVASGRLDAFFIDEGFSS---LDTENKEKIASV 327 (365)
T ss_dssp EEEGGGS-----CHHH---HHHHHHHHHHHHHHHTTTTCCEEEEESCCTT---SCHHHHHHHHHH
T ss_pred CCCchhC-----CHHH---HHHHHHHHHHHhhhcccCCCCEEEEeCCCcc---CCHHHHHHHHHH
Confidence 4567888 9999 999987 666 69999999999999 998877665433
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.18 E-value=1.9e-12 Score=111.84 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=25.7
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKM 28 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i 28 (163)
++|.+.+|++++|+|||||||||++|.+
T Consensus 655 isl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 655 VYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 4677889999999999999999999987
No 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=93.10 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=37.8
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFY 47 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~ 47 (163)
+++.+.+| ++|+||||||||||++++.+...++.+.+++.++...
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 35677788 9999999999999999999998888888887665443
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.14 E-value=3.7e-13 Score=110.15 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=36.7
Q ss_pred Ccc-cccCCccEEEEcCCCCcHHHHHHH--HHhcCC--CCCeeeeeee
Q psy2657 1 MNL-FIPKRKPVMLIGNAGSGKSILINK--MLSSLP--PETYALTSVP 43 (163)
Q Consensus 1 i~l-~i~~ge~v~l~GpsGsGKTTl~~~--i~~~~~--~g~i~~~~~~ 43 (163)
+++ .+.+|++++|+||||||||||++. +.|..+ .|.+++++.+
T Consensus 31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 467 899999999999999999999998 568765 4788888765
No 88
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.08 E-value=2.7e-11 Score=97.92 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=40.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY 47 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~ 47 (163)
+||.+++ ++++|+||||||||||+++++|.++| |++.++|.++...
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGS 70 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSC
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccC
Confidence 4789999 99999999999999999999998655 9999999877543
No 89
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.08 E-value=8e-11 Score=90.06 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhc-CCC--CCeeeeeeee
Q psy2657 11 VMLIGNAGSGKSILINKMLSS-LPP--ETYALTSVPF 44 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~-~~~--g~i~~~~~~~ 44 (163)
++|+||||||||||++.+.|. ..+ | +.+.|.++
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI 56 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-----------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence 499999999999999999886 433 5 55555443
No 90
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.07 E-value=1.1e-10 Score=83.63 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=31.0
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
|+.+.+|++++|+||||||||||++.+++.++ .+.+.+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~~ 41 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA--EIKISISHT 41 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEeceec
Confidence 57889999999999999999999999999864 455555443
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.04 E-value=8.3e-11 Score=85.04 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=26.0
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.++++|++++|+||||||||||+|+++|.++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999999999875
No 92
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.03 E-value=1.2e-10 Score=96.79 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCC---CCCeeeeeeee
Q psy2657 11 VMLIGNAGSGKSILINKMLSSLP---PETYALTSVPF 44 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~~~---~g~i~~~~~~~ 44 (163)
++|+||||||||||+++++|.+. .|.+.++|.++
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 99999999999999999999863 48899888875
No 93
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.02 E-value=8.2e-11 Score=86.34 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=22.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHH-hcC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKML-SSL 32 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~-~~~ 32 (163)
+||++++|++++|+||||||||||++.+. +.+
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 58999999999999999999999999999 876
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.02 E-value=6.6e-12 Score=102.76 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=67.6
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC-CC--eeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP-ET--YALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
+..+.+|++++|+||||||||||++.+++...+ |+ +++.. ..+...+..... .. +....+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~-----ee~~~~l~~~~~----~~-----g~~~~~--- 337 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY-----EESRAQLLRNAY----SW-----GMDFEE--- 337 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES-----SSCHHHHHHHHH----TT-----SCCHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE-----eCCHHHHHHHHH----Hc-----CCCHHH---
Confidence 346899999999999999999999999987543 54 33333 222222222111 00 000000
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCCcccCCch
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSGSFTIEPR 142 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g~~~l~~~ 142 (163)
+...++.. +.+..+.++ |+|+ +|++.+ ++..+|+++++| |+++ ||+.
T Consensus 338 --~~~~g~~~---~~~~~p~~L-----S~g~---~q~~~~a~~l~~~p~llilD-p~~~---Ld~~ 386 (525)
T 1tf7_A 338 --MERQNLLK---IVCAYPESA-----GLED---HLQIIKSEINDFKPARIAID-SLSA---LARG 386 (525)
T ss_dssp --HHHTTSEE---ECCCCGGGS-----CHHH---HHHHHHHHHHTTCCSEEEEE-CHHH---HTSS
T ss_pred --HHhCCCEE---EEEeccccC-----CHHH---HHHHHHHHHHhhCCCEEEEc-ChHH---HHhh
Confidence 00112211 124456777 9998 888887 667899999999 9999 8876
No 95
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.01 E-value=3.1e-12 Score=97.33 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=34.4
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--C-Ceeeeeee
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--E-TYALTSVP 43 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g-~i~~~~~~ 43 (163)
++.+.+|++++|+||||||||||++.+++.+.+ | ++.+.+.+
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 567899999999999999999999999998532 5 66555433
No 96
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.01 E-value=9e-11 Score=91.92 Aligned_cols=42 Identities=19% Similarity=0.470 Sum_probs=36.9
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV 42 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~ 42 (163)
+++.+++|+.++|+||||||||||++++++.+++ |.+.+++.
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 3678899999999999999999999999999876 77877753
No 97
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.00 E-value=1.9e-10 Score=81.72 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=34.4
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVP 43 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~ 43 (163)
.+++|++++|+|||||||||+++.+++.+..|.+.+++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 4789999999999999999999999998666878777654
No 98
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.99 E-value=1.4e-10 Score=98.91 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=26.3
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+|. ++|++++|+|||||||||++|.+.+.
T Consensus 602 sl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 602 NLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 556 78999999999999999999999885
No 99
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.99 E-value=2e-11 Score=106.51 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=26.5
Q ss_pred cccccC-------CccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 2 NLFIPK-------RKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 2 ~l~i~~-------ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+|.+.+ |++++|+|||||||||++|.+ |.+.
T Consensus 776 ~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 776 LIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp EESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred eeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 455655 899999999999999999988 8753
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.97 E-value=1.1e-10 Score=82.45 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=28.7
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
++.+.+|++++|+||||||||||++++++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46778899999999999999999999998763
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.97 E-value=1.4e-10 Score=86.97 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=36.0
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCC---CCCeeeeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLP---PETYALTSVPF 44 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~g~i~~~~~~~ 44 (163)
++++|++++|+||||||||||++++++.++ .|+|.+++.++
T Consensus 21 ~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 21 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp GGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred hhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 488999999999999999999999999853 58888888665
No 102
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.96 E-value=2.9e-10 Score=83.18 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=31.1
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC----CCeeeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP----ETYALTSVP 43 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~----g~i~~~~~~ 43 (163)
.+++|++++|+||||||||||++.++|.++| |.+.+.+.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 4689999999999999999999999998763 556555543
No 103
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.94 E-value=3.8e-11 Score=93.23 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHhcCCceecCCc------ce--EeecceEEEEEecCCCCcccCCchhhhce
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKL------SL--KDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~------~~--~~~~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
++++.++ |+|+ +|++ ++ +++.+|+++++|||+++ ||+..+..+
T Consensus 243 ~~~~~~l-----S~G~---~~~~~la~~l~~a~~l~~~p~~lllDEp~~~---LD~~~~~~l 293 (339)
T 3qkt_A 243 ERPLTFL-----SGGE---RIALGLAFRLAMSLYLAGEISLLILDEPTPY---LDEERRRKL 293 (339)
T ss_dssp EECGGGS-----CHHH---HHHHHHHHHHHHHHHTTTTTCEEEEECCCTT---CCHHHHHHH
T ss_pred cCChHHC-----CHHH---HHHHHHHHHHHHHHHhcCCCCEEEEECCCCC---CCHHHHHHH
Confidence 5678888 9999 9854 44 66779999999999999 998765444
No 104
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.93 E-value=3.5e-10 Score=81.31 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=22.8
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|++++|+||||||||||++.+++.+
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999999865
No 105
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.93 E-value=2.8e-10 Score=92.08 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=38.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF 44 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~ 44 (163)
+||.+.+|++++|+|+||||||||++.+++.+. .|+|.+.+.+.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 578899999999999999999999999999864 48998876553
No 106
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.90 E-value=3.9e-09 Score=84.07 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=53.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCC
Q psy2657 11 VMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPE 88 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 88 (163)
++|+||||||||||++.++|... +|. .+...... ... .. ...+.++.......-..+.|..++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~-------~t~--~~-~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIK-------KTV--QV-EQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC------------CC--EE-EEEECC------CEEEEEEECC----
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCc-------cce--ee-eeEEEEEecCCcccceeeeechhhhh
Confidence 59999999999999999999854 331 11111100 000 00 00001111111112345666666543
Q ss_pred CcC--CCCCCHHHHHHHHHhcCCceecCCcce--EeecceE---EEEEecCC-CC
Q psy2657 89 VDA--YGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM---FVSAMNPT-SG 135 (163)
Q Consensus 89 ~~~--~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~---~i~~deP~-~g 135 (163)
... ..-....+.+.+.++.++ ++++++ +++.++. ++++|||+ .+
T Consensus 101 ~~~~~~~~~~i~~~i~~~~~~~l---~qr~~IaRal~~d~~~~vlL~ldePt~~~ 152 (418)
T 2qag_C 101 AVDNSNCWQPVIDYIDSKFEDYL---NAESRVNRRQMPDNRVQCCLYFIAPSGHG 152 (418)
T ss_dssp -------CHHHHHHHHHHHHHHT---TTSCC-CCCCCCCC-CCEEEEECCC-CCS
T ss_pred hccchhhHHHHHHHHHHHHHHHH---HHHHHHHHHhccCCCeeEEEEEecCcccC
Confidence 210 001224445555556666 677766 8888999 99999999 47
No 107
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.89 E-value=4.2e-10 Score=87.34 Aligned_cols=46 Identities=24% Similarity=0.149 Sum_probs=40.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNF 46 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~ 46 (163)
+++.+.+|++++|+||||||||||++.+++.+. .|++.+.+.++..
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 468899999999999999999999999999864 4899999877643
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.87 E-value=1.8e-11 Score=92.35 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=27.2
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g 35 (163)
+.+|++++|+||||||||||++.+++.+..|
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 6789999999999999999999998765444
No 109
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.86 E-value=9.2e-10 Score=85.75 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV 42 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~ 42 (163)
|.+.+|++++|+||||||||||+++|+|...+ |.+.+.|+
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 67899999999999999999999999999877 44555553
No 110
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.85 E-value=9.1e-10 Score=88.27 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=36.0
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV 42 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~ 42 (163)
|.+.+|+.++|+||||||||||+++|+|..++ |.+.+.|+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 78999999999999999999999999999776 66777775
No 111
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.85 E-value=1.3e-09 Score=77.38 Aligned_cols=26 Identities=35% Similarity=0.853 Sum_probs=24.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
|++++|+||||||||||++.+++.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 68999999999999999999999865
No 112
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.83 E-value=4.1e-10 Score=81.40 Aligned_cols=39 Identities=36% Similarity=0.506 Sum_probs=31.2
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC-----CCeeeeeee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP-----ETYALTSVP 43 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-----g~i~~~~~~ 43 (163)
.++|++++|+||||||||||++.+.+.+++ |.+.+++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 468999999999999999999999998752 445444433
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.83 E-value=1.2e-09 Score=83.71 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=35.9
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFY 47 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~ 47 (163)
+|++++|+|||||||||+++.+.+.++| |++.+.+.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 143 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh
Confidence 6899999999999999999999998644 8999999886543
No 114
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.82 E-value=1.5e-09 Score=78.94 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=26.0
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-+++|++++|+||||||||||++++++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999984
No 115
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.81 E-value=1.2e-09 Score=89.17 Aligned_cols=41 Identities=22% Similarity=0.484 Sum_probs=35.4
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeee
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSV 42 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~ 42 (163)
++.+++|++++|+||||||||||++++++.++| |.+.+.+.
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 567889999999999999999999999999876 66666654
No 116
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.81 E-value=8.6e-10 Score=84.52 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=32.6
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCC----CCCeee---eeee
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLP----PETYAL---TSVP 43 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~----~g~i~~---~~~~ 43 (163)
.+|++++|+||||||||||++.+.+.+. .|++.+ ++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 7899999999999999999999999754 388888 5544
No 117
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.81 E-value=2.1e-09 Score=83.18 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=37.7
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeecCCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFNFYT 48 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~~~~ 48 (163)
.++|++++|+|||||||||+++.+++.+. .|++.+.+.++....
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~ 171 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG 171 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc
Confidence 36899999999999999999999999864 489999998875544
No 118
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.81 E-value=2.1e-09 Score=88.29 Aligned_cols=149 Identities=14% Similarity=0.163 Sum_probs=73.3
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEE
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYF 80 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (163)
+.+ +|++++|+||||||||||++++.+.+.+ +.+.+.+.......... ....+. .........+........+.+
T Consensus 104 ~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~-~~~~ig-~~~~~~~~~~~~a~~~~~vl~ 180 (543)
T 3m6a_A 104 KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH-RRTYVG-AMPGRIIQGMKKAGKLNPVFL 180 (543)
T ss_dssp SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------------CHHHHHHTTCSSSEEEE
T ss_pred ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH-HHHHhc-cCchHHHHHHHHhhccCCEEE
Confidence 344 7899999999999999999999988644 44444332210000000 000000 000000001112222334778
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCc--ce-EeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCcc
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKL--SL-KDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLL 157 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~--~~-~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~ 157 (163)
+|.++--..+. ...+.+.|.+.++.++...-... .. .-..++-++++.++... +++.+++.|.++.++.|+.
T Consensus 181 lDEid~l~~~~--~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~---l~~aL~~R~~vi~~~~~~~ 255 (543)
T 3m6a_A 181 LDEIDKMSSDF--RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLAT---IPGPLRDRMEIINIAGYTE 255 (543)
T ss_dssp EEESSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTT---SCHHHHHHEEEEECCCCCH
T ss_pred Ehhhhhhhhhh--ccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcccc---CCHHHHhhcceeeeCCCCH
Confidence 88875322220 00122223333344331000001 11 12245677788888777 9999999999988888876
Q ss_pred cc
Q psy2657 158 RI 159 (163)
Q Consensus 158 ~~ 159 (163)
+.
T Consensus 256 ~e 257 (543)
T 3m6a_A 256 IE 257 (543)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 119
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.80 E-value=9.4e-09 Score=76.19 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=35.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFN 45 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~ 45 (163)
+++.+.+| ++|+||||||||||++++.+....+.+.+++.++.
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 35667777 99999999999999999999887777777765543
No 120
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.79 E-value=2e-09 Score=82.27 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=29.2
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeee---eeeeecC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYAL---TSVPFNF 46 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~---~~~~~~~ 46 (163)
.+..|++++|+||||||||||+|+++|..+| |++.+ +|.+++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~ 212 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT 212 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCcee
Confidence 4567999999999999999999999998765 88888 7766543
No 121
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.79 E-value=2.1e-09 Score=79.02 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=25.8
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHH--hc
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKML--SS 31 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~--~~ 31 (163)
.+++|++++|+||||||||||+++++ +.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999998 55
No 122
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.78 E-value=1.7e-10 Score=84.87 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=29.1
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNF 46 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~ 46 (163)
+.+.+ ++++|+||||||||||+++|.+.+.| |.|.++|.++..
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~ 67 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAG 67 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---------
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEccc
Confidence 44555 78999999999999999999998654 999999987744
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.78 E-value=2.9e-09 Score=83.31 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.2
Q ss_pred CcccccC--CccEEEEcCCCCcHHHHHHHHHhcCCC------CCeee
Q psy2657 1 MNLFIPK--RKPVMLIGNAGSGKSILINKMLSSLPP------ETYAL 39 (163)
Q Consensus 1 i~l~i~~--ge~v~l~GpsGsGKTTl~~~i~~~~~~------g~i~~ 39 (163)
+++.+.+ |+.++|+||||||||||+++++|.+++ |++++
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 5788999 999999999999999999999998765 56655
No 124
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.76 E-value=2.4e-10 Score=86.99 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=25.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.++.+++|+||+|||||||++.+.+.+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999887653
No 125
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.76 E-value=7.6e-10 Score=94.03 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
|++++|+|||||||||++|.+.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 9999999999999999999998863
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=2.4e-09 Score=85.35 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=28.8
Q ss_pred CcccccCCcc--EEEEcCCCCcHHHHHHHHHhcC
Q psy2657 1 MNLFIPKRKP--VMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 1 i~l~i~~ge~--v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+||++++|++ ++|+||||||||||+++++|..
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4789999999 9999999999999999999973
No 127
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.74 E-value=6.4e-09 Score=74.44 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=27.1
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
++.+|++++|+|||||||||+++.+.+.+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998744
No 128
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.73 E-value=3.8e-09 Score=80.51 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=33.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeec
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFN 45 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~ 45 (163)
+|++++++|+||+||||++.++.+.+. .+++.+.+.+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 899999999999999999999998864 478888876653
No 129
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.72 E-value=4.1e-09 Score=75.59 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=31.6
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
..+|++++|+|||||||||+++.+.+.+ |.+.+++.++
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~--g~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET--GLEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH--CCEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh--CCeEEccccc
Confidence 3579999999999999999999998876 6777777554
No 130
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.72 E-value=6.7e-09 Score=73.36 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=25.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+|++++|+||||||||||++.+++.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999865
No 131
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.71 E-value=5.4e-09 Score=83.27 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=35.2
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeec
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFN 45 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~ 45 (163)
..+|++++|+||||||||||++++++.+++ |+|.+.+.++.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 368999999999999999999999998654 88888886653
No 132
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=2.1e-09 Score=82.41 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=26.3
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeee---eeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYAL---TSVPF 44 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~---~~~~~ 44 (163)
+.+.+|++++|+||||||||||+|+++|...+ |++.+ .|...
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 56778999999999999999999999998654 77776 55443
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.69 E-value=8.6e-09 Score=78.77 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=29.7
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeee---eeeeec
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--ETYAL---TSVPFN 45 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~---~~~~~~ 45 (163)
.+..|++++|+||||||||||+|+++ ..++ |++.+ .|.+.+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce
Confidence 34579999999999999999999999 7654 88888 676543
No 134
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.66 E-value=4.5e-09 Score=75.41 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=34.8
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCC-CCCe--eeeeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLP-PETY--ALTSVPF 44 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~-~g~i--~~~~~~~ 44 (163)
+..++|++++|+|||||||||+++.+.+.+. +|.+ ++++.++
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3457899999999999999999999988753 4777 7777655
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.65 E-value=8.2e-09 Score=73.18 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
|++++|+|||||||||+++.+++.. .|.+.+++.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-DNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-SSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-CCeEEEcccch
Confidence 6889999999999999999998843 46788877554
No 136
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.64 E-value=1.3e-08 Score=73.35 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=25.8
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.++|++++|+||||||||||++.+.+.+.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 478999999999999999999999998653
No 137
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.63 E-value=7.7e-09 Score=81.26 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=34.0
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCC---CCCeeeeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLP---PETYALTSVP 43 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~---~g~i~~~~~~ 43 (163)
+.+++|+.++|+||||||||||++++++.++ .|+|.+.+.+
T Consensus 131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 131 LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp HTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 3478999999999999999999999999864 3777666543
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.63 E-value=2.2e-08 Score=72.35 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=27.3
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
-++|++++|+|||||||||+++.+++.+++
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999999998764
No 139
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.63 E-value=1.3e-08 Score=74.58 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=35.3
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeec
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFN 45 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~ 45 (163)
...++|++++|.|+|||||||+++.+.+. .|++.+.+.+..
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~--~g~v~~~~~~~~ 55 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY--KNDICLLTEPVE 55 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG--TTTEEEECCTHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc--cCCeEEEecCHH
Confidence 34678999999999999999999999887 778888887653
No 140
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.61 E-value=2.3e-08 Score=71.96 Aligned_cols=31 Identities=42% Similarity=0.735 Sum_probs=26.2
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+...+|++++|+||||||||||++.+++..+
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999999998754
No 141
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.60 E-value=1.8e-08 Score=70.96 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=27.5
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
++.+.+| +.+|+||||||||||+++|...+.+
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4667788 9999999999999999999887643
No 142
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.60 E-value=2.4e-08 Score=77.92 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=27.3
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCC-C--CCeeee
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLP-P--ETYALT 40 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~-~--g~i~~~ 40 (163)
.+|++++|+||||||||||+|+++|... + |++.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 4789999999999999999999999876 5 777665
No 143
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.59 E-value=3.4e-08 Score=75.95 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=34.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC----------CCCCeeeeeeeecCC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL----------PPETYALTSVPFNFY 47 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~----------~~g~i~~~~~~~~~~ 47 (163)
=++++|+|+||||||||+|.+++.. +.|++.++|..+...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~ 53 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDR 53 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTT
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCC
Confidence 3589999999999999999999875 349999999887654
No 144
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.8e-08 Score=71.18 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=24.5
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+||.+.+|++++|+|++||||||+++.+.+.+
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999999999998765
No 145
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.57 E-value=9.6e-09 Score=80.26 Aligned_cols=31 Identities=35% Similarity=0.389 Sum_probs=27.6
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
...+|++++|+||||||||||++++++.+++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 4578889999999999999999999998653
No 146
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.54 E-value=4.3e-08 Score=73.72 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=35.6
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeec
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFN 45 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~ 45 (163)
+++.+.+| ++|+||||||||||++++.+....+.+.+++.++.
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 35667777 99999999999999999999987777877765543
No 147
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.53 E-value=1.6e-07 Score=76.36 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=34.7
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNF 46 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~ 46 (163)
++.+.+| ++|+||||||||||++++.+....+-+.+++.++..
T Consensus 60 g~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 60 GARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 102 (499)
T ss_dssp SCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS
T ss_pred cCCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH
Confidence 4556666 999999999999999999998876777777766543
No 148
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.51 E-value=2.3e-08 Score=74.40 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=28.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHH---hcCC--CCCee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKML---SSLP--PETYA 38 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~---~~~~--~g~i~ 38 (163)
..+|++++|+|||||||||+++.+. |... .|.++
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 3678999999999999999999998 6533 26666
No 149
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.51 E-value=3.1e-08 Score=71.78 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=32.4
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVP 43 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~ 43 (163)
.+.+|++++|+||||||||||++.+++... .|++.+.+.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 478999999999999999999999987643 3667665543
No 150
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.51 E-value=5.1e-08 Score=68.12 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.6
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
-.+|++++|+|||||||||+++.+.+.+ |.+.+++.++
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~--g~~~i~~d~~ 42 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQL--HAAFLDGDFL 42 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHH--TCEEEEGGGG
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhh--CcEEEeCccc
Confidence 3578999999999999999999998765 5666665443
No 151
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.50 E-value=1.8e-08 Score=74.48 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHH---hcCCC--CCeeeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKML---SSLPP--ETYALTSV 42 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~---~~~~~--g~i~~~~~ 42 (163)
++++++|+|||||||||+++.++ |...+ |++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 57899999999999999999999 87654 66666543
No 152
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.47 E-value=2.9e-08 Score=68.26 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=28.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCC-C--Ceeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPP-E--TYALTS 41 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g--~i~~~~ 41 (163)
+|++++|+||||||||||++++.+.+.+ | .+++++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 7999999999999999999999987533 4 344443
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.47 E-value=8.1e-08 Score=68.92 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=33.0
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF 44 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~ 44 (163)
...+|++++|+|+|||||||+++.+.+.++ .|.+.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 357899999999999999999999998763 46676665443
No 154
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.46 E-value=3.8e-08 Score=70.43 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=27.1
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
|.+.+|..++|+|+||||||||++.++|..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999998865
No 155
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.45 E-value=3e-07 Score=78.77 Aligned_cols=133 Identities=16% Similarity=0.254 Sum_probs=73.2
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHH---HHHHHHhccccccCCceecCCCCceEE
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSE---MLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
++.+..++.++|+||||||||||++++.+.+...-+.+++.++....... .....+..... ....+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~-----------~~p~i 300 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK-----------NAPAI 300 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHH-----------HCSEE
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHh-----------cCCcE
Confidence 45788999999999999999999999999876544555554433222111 11222211110 11256
Q ss_pred EEEecCCCCCCc--CCCC---CCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhh--ce-eEE
Q psy2657 79 YFVDDMNMPEVD--AYGT---VQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQR--HF-YVF 150 (163)
Q Consensus 79 ~~l~~~~l~~~~--~~~~---~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~--~~-~~~ 150 (163)
.++|++...... .... ....+.+..+ ..|. +++ .++-++++.++... +|+.+.+ .| ..+
T Consensus 301 l~iDEid~l~~~~~~~~~~~~~~~~~~Ll~l-l~g~---~~~------~~v~vI~atn~~~~---ld~al~r~gRf~~~i 367 (806)
T 1ypw_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTL-MDGL---KQR------AHVIVMAATNRPNS---IDPALRRFGRFDREV 367 (806)
T ss_dssp EEEESGGGTSCTTSCCCSHHHHHHHHHHHHH-HHSS---CTT------SCCEEEEECSCTTT---SCTTTTSTTSSCEEE
T ss_pred EEeccHHHhhhccccccchHHHHHHHHHHHH-hhhh---ccc------ccEEEecccCCchh---cCHHHhccccccccc
Confidence 788888432211 0001 1111222222 2344 443 23455667777777 8888776 55 445
Q ss_pred EEcCCccc
Q psy2657 151 ALRLGLLR 158 (163)
Q Consensus 151 ~l~~~~~~ 158 (163)
.+..|+.+
T Consensus 368 ~i~~p~~~ 375 (806)
T 1ypw_A 368 DIGIPDAT 375 (806)
T ss_dssp CCCCCCHH
T ss_pred ccCCCCHH
Confidence 56655543
No 156
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.45 E-value=6.2e-08 Score=75.44 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=34.7
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcC--CC------CC-eeeeeee
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSL--PP------ET-YALTSVP 43 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~------g~-i~~~~~~ 43 (163)
.+.+.+|++++|+||||||||||++.+++.. +| |+ +++++.+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3568899999999999999999999999876 32 56 7777654
No 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=2.3e-07 Score=71.62 Aligned_cols=129 Identities=12% Similarity=0.175 Sum_probs=68.7
Q ss_pred ccccCCcc--EEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEE
Q psy2657 3 LFIPKRKP--VMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMI 78 (163)
Q Consensus 3 l~i~~ge~--v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (163)
..++.|++ ++|.||+|+||||+++++.+.+.+ +...+.+.+.+........+..+...... ...+ .....+
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~--~~~~---~~~~~v 113 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST--RQIF---SKGFKL 113 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB--CCSS---SCSCEE
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhh--cccC---CCCceE
Confidence 34677877 999999999999999999887533 33444444443322333333222211110 0111 122456
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCcc
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLL 157 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~ 157 (163)
.++|+++.-..+ ..+.|+.++.... ..+.++++.++... +.+..+..+..+.+..++.
T Consensus 114 iiiDe~~~l~~~------~~~~L~~~le~~~------------~~~~~il~~n~~~~---i~~~i~sR~~~~~~~~l~~ 171 (340)
T 1sxj_C 114 IILDEADAMTNA------AQNALRRVIERYT------------KNTRFCVLANYAHK---LTPALLSQCTRFRFQPLPQ 171 (340)
T ss_dssp EEETTGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGGG---SCHHHHTTSEEEECCCCCH
T ss_pred EEEeCCCCCCHH------HHHHHHHHHhcCC------------CCeEEEEEecCccc---cchhHHhhceeEeccCCCH
Confidence 677776532222 3344455554322 23345555554444 7777776666666554443
No 158
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.44 E-value=1.3e-07 Score=65.84 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=24.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.|++++|+|||||||||+++.+.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999998764
No 159
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.44 E-value=9.4e-08 Score=69.86 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.7
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-+.+|++++|+||||||||||++.+++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999999999999883
No 160
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.42 E-value=2.1e-08 Score=70.64 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCC-----CCCeeeeeeeec
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLP-----PETYALTSVPFN 45 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~-----~g~i~~~~~~~~ 45 (163)
+.++|+|+||||||||++.+++.++ .|.|.+++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 5799999999999999999999854 367888887743
No 161
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.42 E-value=1e-07 Score=72.94 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=35.5
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF 44 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~ 44 (163)
++...+|++++|+|||||||||++..+.+.+. .+++.+.+.+.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45567899999999999999999999998764 36788877654
No 162
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.38 E-value=9.2e-08 Score=71.24 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.6
Q ss_pred CcccccC---CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 1 MNLFIPK---RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 1 i~l~i~~---ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+||.+.+ |++++|+|++||||||+++.+.+.+
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3678888 9999999999999999999998754
No 163
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.37 E-value=1.3e-07 Score=72.80 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=37.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF 44 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~ 44 (163)
++|.+.+|++++++|+||+||||++.++.+.+. .+++.+.+.+.
T Consensus 98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456778999999999999999999999988753 47888877664
No 164
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.36 E-value=1.1e-06 Score=66.81 Aligned_cols=133 Identities=15% Similarity=0.245 Sum_probs=69.7
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecC-CCCceEEEEEe
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGP-PGNKTMIYFVD 82 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 82 (163)
.+..+..++|.||+||||||+++++.+....+-+.+++.. .....+.. .......+|.. ......+.++|
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~--------l~~~~~g~-~~~~~~~~f~~a~~~~p~il~iD 115 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE--------LLTMWFGE-SEANVREIFDKARQAAPCVLFFD 115 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH--------HHHHHHTT-CTTHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH--------HHhhhcCc-hHHHHHHHHHHHHhcCCeEEEEE
Confidence 4678889999999999999999999988753333333211 11111110 00000011111 01123678888
Q ss_pred cCCCCCC---------cCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhh--ce-eEE
Q psy2657 83 DMNMPEV---------DAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQR--HF-YVF 150 (163)
Q Consensus 83 ~~~l~~~---------~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~--~~-~~~ 150 (163)
+++.-.. .....+...++|+.+ ++-. .. .+.-++++.+.... +|+.+++ .| ..+
T Consensus 116 Eid~l~~~~~~~~~~~~~~~~~~~~~lL~~l-~~~~---~~-------~~v~vi~atn~~~~---ld~al~r~gRf~~~i 181 (301)
T 3cf0_A 116 ELDSIAKARGGNIGDGGGAADRVINQILTEM-DGMS---TK-------KNVFIIGATNRPDI---IDPAILRPGRLDQLI 181 (301)
T ss_dssp STTHHHHHHTTTTCCSSCSCCHHHHHHHHHH-HSSC---TT-------SSEEEEEEESCGGG---SCGGGGSTTSSCEEE
T ss_pred ChHHHhhccCCCcCCcchHHHHHHHHHHHHh-hccc---CC-------CCEEEEEecCCccc---cChHHhcCCccceEE
Confidence 8863110 001112234444433 3211 11 24556666665555 8888876 56 577
Q ss_pred EEcCCcccc
Q psy2657 151 ALRLGLLRI 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.++.|+.+.
T Consensus 182 ~i~~p~~~~ 190 (301)
T 3cf0_A 182 YIPLPDEKS 190 (301)
T ss_dssp ECCCCCHHH
T ss_pred ecCCcCHHH
Confidence 888877654
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.36 E-value=1.4e-07 Score=74.23 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=30.4
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCe
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i 37 (163)
++.+.+|++++|+||||||||||++.+.+.. .|.+
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-~g~~ 197 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELC-GGKA 197 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-CCEE
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhc-CCcE
Confidence 5789999999999999999999999999864 3444
No 166
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.33 E-value=4e-06 Score=59.66 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=68.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCC-CC-CeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLP-PE-TYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNM 86 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~-~g-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 86 (163)
..++|.||+|+||||+++.+...+. .+ ...+...+.+...........+....... ........+.++|+++.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA-----PIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC-----CSTTCSCEEEEEETGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc-----CCCccCceEEEEeChhh
Confidence 3599999999999999998876532 11 12222223333333333332222111110 11224457888998864
Q ss_pred CCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCcccc
Q psy2657 87 PEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 87 ~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
...+ ..+.|.++++... .+..++++.+.... +++.+.+.+..+.++.++.+.
T Consensus 114 l~~~------~~~~l~~~l~~~~------------~~~~~i~~~~~~~~---~~~~l~~r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 114 LTAD------AQAALRRTMEMYS------------KSCRFILSCNYVSR---IIEPIQSRCAVFRFKPVPKEA 165 (226)
T ss_dssp SCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGGG---SCHHHHTTSEEEECCCCCHHH
T ss_pred cCHH------HHHHHHHHHHhcC------------CCCeEEEEeCChhh---cCHHHHHhCceeecCCCCHHH
Confidence 3322 3445555555432 23445555444444 888888888888877766543
No 167
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.32 E-value=1.4e-07 Score=77.67 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=33.4
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCC--C-Cee-eeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPP--E-TYA-LTSVPF 44 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g-~i~-~~~~~~ 44 (163)
.+.+|++++|+|+||||||||++++.+.+.+ | .+. +++.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999998654 3 564 666443
No 168
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.30 E-value=3.4e-07 Score=65.66 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=26.6
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+.+|++++|+|++||||||+++.+.+.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999998876
No 169
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.29 E-value=4e-07 Score=64.52 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|+||||||||++.+.+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999874
No 170
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.29 E-value=2.4e-07 Score=72.43 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=34.9
Q ss_pred CCCHH-HHHHHHHhcCCceecCCcce--Eee---------cceEEEEEecCCCCcccCCchhhhce
Q psy2657 94 TVQPH-TVIRQYMDYQHWYDRQKLSL--KDI---------HNIMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 94 ~~~~~-ellr~~~s~g~~~~~~~~~~--~~~---------~~~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
++++. ++ |+|| +|++++ +++ .+|+++++|||+++ ||+..+..+
T Consensus 259 ~~~~~~~l-----S~Gq---qq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~---LD~~~~~~l 313 (359)
T 2o5v_A 259 DFPASDYA-----SRGE---GRTVALALRRAELELLREKFGEDPVLLLDDFTAE---LDPHRRQYL 313 (359)
T ss_dssp TEEHHHHC-----CHHH---HHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC---CCHHHHHHH
T ss_pred CcchhhhC-----CHHH---HHHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc---CCHHHHHHH
Confidence 44455 55 9999 999888 777 79999999999999 998766554
No 171
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.29 E-value=4.6e-07 Score=64.97 Aligned_cols=30 Identities=37% Similarity=0.730 Sum_probs=26.3
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.+.+|.+++|+|||||||||+++.+...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999987763
No 172
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.28 E-value=1.5e-06 Score=65.81 Aligned_cols=117 Identities=15% Similarity=0.241 Sum_probs=60.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccC----CceecC-CCCceEEEEEec
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKA----GRNFGP-PGNKTMIYFVDD 83 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~l~~ 83 (163)
.+++|+||+|+||||+++.+.+.+......+...+++...........+........ +.+... ......+.++|+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 589999999999999999998875432222233344433332222223221110000 000000 001225788888
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecC
Q psy2657 84 MNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNP 132 (163)
Q Consensus 84 ~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP 132 (163)
++.... ...+.|.+.++.+.+.+... ...-+.++-++++.++
T Consensus 128 i~~l~~------~~~~~Ll~~le~~~~~~~~~-~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 128 IEKAHP------DVFNILLQMLDDGRLTDSHG-RTVDFRNTVIIMTSNL 169 (311)
T ss_dssp GGGSCH------HHHHHHHHHHHHSEEECTTS-CEEECTTEEEEEEEST
T ss_pred hhhcCH------HHHHHHHHHHhcCEEEcCCC-CEEECCCcEEEEeccc
Confidence 854322 25566667777776443221 1133345557777776
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.28 E-value=4.6e-07 Score=65.18 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=25.5
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHh
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
-+.+|++++|+||||||||||++.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999999988
No 174
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.27 E-value=8.4e-06 Score=60.49 Aligned_cols=141 Identities=17% Similarity=0.160 Sum_probs=75.3
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhcccc-cc------CCceecCCCCceEE
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLE-KK------AGRNFGPPGNKTMI 78 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ 78 (163)
..+.++.|.||+|+|||++++.+.........-+...+++... .......+.+... .. ....+.. ....+
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~g~~~~~~~g~~~~~~~~l~~--a~~~~ 103 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN-ENLLDSELFGHEAGAFTGAQKRHPGRFER--ADGGT 103 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC-HHHHHHHHHCCC---------CCCCHHHH--TTTSE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC-hhHHHHHhcCCcccccccccccccchhhh--cCCcE
Confidence 4567999999999999999999988765432333344554443 2222222211110 00 0001100 11246
Q ss_pred EEEecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCC----cccCCchhhhceeEEEEcC
Q psy2657 79 YFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG----SFTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 79 ~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g----~~~l~~~~~~~~~~~~l~~ 154 (163)
.++|+++.-..+ ..+.|.++++.+.+.+ .......-.+..+|++.++... ...+++.+...|..+.+..
T Consensus 104 l~lDEi~~l~~~------~q~~Ll~~l~~~~~~~-~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~l 176 (265)
T 2bjv_A 104 LFLDELATAPMM------VQEKLLRVIEYGELER-VGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQL 176 (265)
T ss_dssp EEEESGGGSCHH------HHHHHHHHHHHCEECC-CCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEEC
T ss_pred EEEechHhcCHH------HHHHHHHHHHhCCeec-CCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeC
Confidence 788888643332 4455667777765321 1111133456778888876421 1136777877776555555
Q ss_pred Cc
Q psy2657 155 GL 156 (163)
Q Consensus 155 ~~ 156 (163)
|.
T Consensus 177 p~ 178 (265)
T 2bjv_A 177 PP 178 (265)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 175
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.27 E-value=2.2e-07 Score=71.56 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=26.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC----CCCeeeeee
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP----PETYALTSV 42 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~----~g~i~~~~~ 42 (163)
+++|+|||||||||+++.+.+.+. .|++.+...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEee
Confidence 899999999999999999988764 255544443
No 176
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.26 E-value=4.4e-07 Score=72.34 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=26.7
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+.+..|++++|+||||||||||++++.+.+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4566789999999999999999999987643
No 177
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.26 E-value=3.6e-06 Score=64.49 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=76.4
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccc-cCCc-eecCCCCceEEEEEec
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEK-KAGR-NFGPPGNKTMIYFVDD 83 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~ 83 (163)
..|.+++|.||+|+|||++++.+...+...-+ -.+++....... .+...... ..+. .+.+......+.++|+
T Consensus 44 ~~~~~vll~G~pGtGKT~la~~la~~~~~~~~---~i~~~~~~~~~~---l~g~~~~~~~~~~~~~~~g~l~~~vl~iDE 117 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSVNTLAKTMDLDFH---RIQFTPDLLPSD---LIGTMIYNQHKGNFEVKKGPVFSNFILADE 117 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHHHHHHHHTTCCEE---EEECCTTCCHHH---HHEEEEEETTTTEEEEEECTTCSSEEEEET
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHhCCCeE---EEecCCCCChhh---cCCceeecCCCCceEeccCcccccEEEEEc
Confidence 45779999999999999999999887643211 122222222221 11111100 0111 1111111124678888
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCC--CcccCCchhhhceeE-EEEcCCcccc
Q psy2657 84 MNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTS--GSFTIEPRLQRHFYV-FALRLGLLRI 159 (163)
Q Consensus 84 ~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~--g~~~l~~~~~~~~~~-~~l~~~~~~~ 159 (163)
++....+ ..+.|.+.+..+.+.. .......-...-++++.+|.. +...+++.+.+.|.. +.++.|+.+.
T Consensus 118 i~~~~~~------~~~~Ll~~l~~~~~~~-~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~ 189 (331)
T 2r44_A 118 VNRSPAK------VQSALLECMQEKQVTI-GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKES 189 (331)
T ss_dssp GGGSCHH------HHHHHHHHHHHSEEEE-TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHH
T ss_pred cccCCHH------HHHHHHHHHhcCceee-CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHH
Confidence 8653322 4455666666655221 101112223455667777765 344699999999874 8888887654
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.25 E-value=2.6e-07 Score=73.58 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=29.4
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
++|.++.|+.++|+|+||||||||++.+++..
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 47889999999999999999999999998873
No 179
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.24 E-value=7.4e-07 Score=66.82 Aligned_cols=134 Identities=15% Similarity=0.253 Sum_probs=69.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHH---HHHHHHhccccccCCceecCCCCceEEEEE
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSE---MLQKVLEKPLEKKAGRNFGPPGNKTMIYFV 81 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (163)
+..+..++|.||+|+||||+++.+...+...-+.+....+....... .....+.. . ......+.++
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~vl~i 116 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKL-A----------KEKAPSIIFI 116 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHH-H----------HHTCSEEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHH-H----------HHcCCeEEEE
Confidence 46778899999999999999999988764322222222221111111 11111110 0 0012257888
Q ss_pred ecCCCCC-CcC----CCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhh--ce-eEEEEc
Q psy2657 82 DDMNMPE-VDA----YGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQR--HF-YVFALR 153 (163)
Q Consensus 82 ~~~~l~~-~~~----~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~--~~-~~~~l~ 153 (163)
|+++.-. ... ..+....+.+.+++.....+... .++-++++.++... +++.+.+ .| ..+.++
T Consensus 117 DEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~~~vI~ttn~~~~---l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 117 DEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-------GDVKIIGATNRPDI---LDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp ETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-------SSEEEEEECSCGGG---BCHHHHSTTSEEEEEECC
T ss_pred ECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-------CCEEEEEeCCCchh---cCHHHcCCCcCCeEEEEC
Confidence 9885321 100 00112333444443321100011 24556667666656 9988887 66 467777
Q ss_pred CCcccc
Q psy2657 154 LGLLRI 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
.|+.+.
T Consensus 187 ~p~~~~ 192 (285)
T 3h4m_A 187 APDEKG 192 (285)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 777654
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.24 E-value=1.7e-07 Score=72.35 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
++++|+||||||||||++++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 789999999999999999999876
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=2e-06 Score=59.86 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCC-------CCeeeeeeeecC----CCCHHHHHHHHhccccccCCceecCCCCc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPP-------ETYALTSVPFNF----YTSSEMLQKVLEKPLEKKAGRNFGPPGNK 75 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~-------g~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (163)
.+..++|+||+|+||||+++.+...+.. ....+...++.. ..........+...+... . ....
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~ 115 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL----A--KQEG 115 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH----H--HSTT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH----h--hcCC
Confidence 4567999999999999999988775421 011111111111 111111111111111100 0 1123
Q ss_pred eEEEEEecCCCCC-Cc-CCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCC--cccCCchhhhceeEEE
Q psy2657 76 TMIYFVDDMNMPE-VD-AYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG--SFTIEPRLQRHFYVFA 151 (163)
Q Consensus 76 ~~~~~l~~~~l~~-~~-~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g--~~~l~~~~~~~~~~~~ 151 (163)
..+.++|+++.-. .. ........++++.++..+. ..++++.++... ...+++.+.+.|..+.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~ 181 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALARGE--------------LHCVGATTLDEYRQYIEKDAALERRFQKVF 181 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHHTTS--------------CCEEEEECHHHHHHHTTTCHHHHTTEEEEE
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCC--------------eEEEEeCCHHHHHHHHhcCHHHHHHhceee
Confidence 4678899886422 11 1113345677777665432 233444333220 1138899999999899
Q ss_pred EcCCcccc
Q psy2657 152 LRLGLLRI 159 (163)
Q Consensus 152 l~~~~~~~ 159 (163)
++.|+.+.
T Consensus 182 ~~~p~~~~ 189 (195)
T 1jbk_A 182 VAEPSVED 189 (195)
T ss_dssp CCCCCHHH
T ss_pred cCCCCHHH
Confidence 99988776
No 182
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.22 E-value=7.3e-07 Score=70.41 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=25.4
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHh
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
.+..|..++|+|+||+|||||++++.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 467899999999999999999999999
No 183
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.19 E-value=4.8e-07 Score=75.14 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=29.9
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
++.+..|++++|+||||||||||++++.+.+++
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 456789999999999999999999999998765
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.14 E-value=1.2e-06 Score=63.36 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+.+++|+||+||||||+++.+.+.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 185
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.14 E-value=7.1e-07 Score=67.96 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.4
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCC--CC-Ceeeeeeee
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLP--PE-TYALTSVPF 44 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g-~i~~~~~~~ 44 (163)
.+|++++++|||||||||++..+.+.+. .| ++.+.+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4789999999999999999999998864 46 677766554
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.13 E-value=2.7e-05 Score=59.78 Aligned_cols=134 Identities=16% Similarity=0.240 Sum_probs=69.9
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC-CCeeeeeeeecC---CCCHHHHHHHHhccccccCCceecCCCCceEEEEE
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNF---YTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFV 81 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~-g~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (163)
.+...++|.||+|+|||+|++.+...... .-+.++...+.. ..........+..- ...+..+.++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a-----------~~~~~~vl~i 111 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA-----------RENKPSIIFI 111 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHH-----------HHTSSEEEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHH-----------HhcCCcEEEe
Confidence 34567999999999999999999887622 112222222111 11122222222110 0122367889
Q ss_pred ecCCCCCCc-CCC-CCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhce-eEEEEcCCccc
Q psy2657 82 DDMNMPEVD-AYG-TVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHF-YVFALRLGLLR 158 (163)
Q Consensus 82 ~~~~l~~~~-~~~-~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~-~~~~l~~~~~~ 158 (163)
|+++--... ... ......++.+++..-.-... --.++-++++.+.... +|+.+++.| ..+.++.|+.+
T Consensus 112 DEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~------~~~~v~vI~atn~~~~---ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 112 DEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV------DNDGILVLGATNIPWV---LDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp ETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS------CCTTEEEEEEESCTTT---SCHHHHHTCCEEEECCCCCHH
T ss_pred ecHHHhccccccccchHHHHHHHHHHHHHhcccc------cCCCEEEEEecCCccc---CCHHHHhhcCeEEEeCCcCHH
Confidence 998642111 110 11122232332221100000 0134556667777666 999999988 67888888765
Q ss_pred c
Q psy2657 159 I 159 (163)
Q Consensus 159 ~ 159 (163)
.
T Consensus 183 ~ 183 (322)
T 1xwi_A 183 A 183 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=6.3e-06 Score=63.29 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=66.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCC-C--CCeeeeeeeecCCCCHHHHHHHHhccccc-cCC----ceecCCCCceEEEE
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLP-P--ETYALTSVPFNFYTSSEMLQKVLEKPLEK-KAG----RNFGPPGNKTMIYF 80 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~-~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~ 80 (163)
..++|.||+|+||||+++.+.+.+. + +...+...+.+.......+...+...... ... ...........+.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 138 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIII 138 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEE
Confidence 4599999999999999999887642 1 23334444433322333222221110000 000 00011223446778
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCccc
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLR 158 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~ 158 (163)
+|+++.-... ..+.|..++.... .+..++++.+.... +++.+.+.+..+.+..++.+
T Consensus 139 iDE~~~l~~~------~~~~Ll~~le~~~------------~~~~~il~~~~~~~---l~~~l~sR~~~i~~~~~~~~ 195 (353)
T 1sxj_D 139 LDEADSMTAD------AQSALRRTMETYS------------GVTRFCLICNYVTR---IIDPLASQCSKFRFKALDAS 195 (353)
T ss_dssp ETTGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGGG---SCHHHHHHSEEEECCCCCHH
T ss_pred EECCCccCHH------HHHHHHHHHHhcC------------CCceEEEEeCchhh---CcchhhccCceEEeCCCCHH
Confidence 8887532222 2344445555433 13344444444344 88888888887777666554
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.13 E-value=2.7e-05 Score=59.63 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=70.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPE 88 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 88 (163)
..++|.||+|+|||++++.+.......-+.+ +.........+...+.. .....+.++|+++.-.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------------~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTT---AAPMIEKSGDLAAILTN-------------LSEGDILFIDEIHRLS 119 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE---EGGGCCSHHHHHHHHHT-------------CCTTCEEEEETGGGCC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe---cchhccchhHHHHHHHh-------------ccCCCEEEEechhhcC
Confidence 5799999999999999999987754322222 22222333333322211 1233577888886332
Q ss_pred CcCCCCCCHHHHHHHHHhcCCceecCCc--------ce-EeecceEEEEEecCCCCcccCCchhhhce-eEEEEcCCccc
Q psy2657 89 VDAYGTVQPHTVIRQYMDYQHWYDRQKL--------SL-KDIHNIMFVSAMNPTSGSFTIEPRLQRHF-YVFALRLGLLR 158 (163)
Q Consensus 89 ~~~~~~~~~~ellr~~~s~g~~~~~~~~--------~~-~~~~~~~~i~~deP~~g~~~l~~~~~~~~-~~~~l~~~~~~ 158 (163)
.+ ..+.|...+..+. ...+ .+ .......++++.++... +++.+.+.| ..+.++.++.+
T Consensus 120 ~~------~~~~Ll~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~---l~~~L~~R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 120 PA------IEEVLYPAMEDYR---LDIIIGSGPAAQTIKIDLPKFTLIGATTRAGM---LSNPLRDRFGMQFRLEFYKDS 187 (338)
T ss_dssp HH------HHHHHHHHHHTSC---C---------CCCCCCCCCCCEEEEEESCGGG---SCHHHHTTCSEEEECCCCCHH
T ss_pred HH------HHHHHHHHHHhcc---chhhcccCccccceecCCCCeEEEEeCCCccc---cCHHHHhhcCEEeeCCCcCHH
Confidence 22 3445555556554 1111 00 01113567777776555 888888888 77888877655
Q ss_pred c
Q psy2657 159 I 159 (163)
Q Consensus 159 ~ 159 (163)
.
T Consensus 188 e 188 (338)
T 3pfi_A 188 E 188 (338)
T ss_dssp H
T ss_pred H
Confidence 4
No 189
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.13 E-value=1.6e-06 Score=61.20 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=26.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+|+...+|.+++|+|++||||||+.+.+...
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4677888999999999999999999988776
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.11 E-value=8.3e-07 Score=68.78 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=34.5
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF 44 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~ 44 (163)
++.+.+|.+++|+|++|+|||||++.+++.+. .+++.+.+.+.
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 46678999999999999999999999988753 35666655544
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.11 E-value=9.3e-06 Score=59.83 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.....++|.||+|+|||++++.+...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999998765
No 192
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.10 E-value=1.6e-06 Score=60.67 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+|++++|+|++||||||+++.+.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998865
No 193
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.10 E-value=1.7e-06 Score=61.54 Aligned_cols=24 Identities=33% Similarity=0.822 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+++|+||||||||||++.++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999887654
No 194
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.09 E-value=1.5e-06 Score=68.79 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.4
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHH--HhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKM--LSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i--~~~~~ 33 (163)
+.+|++++|+||||||||||++.+ .+..+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 678999999999999999999955 34443
No 195
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.09 E-value=1.5e-06 Score=59.56 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=20.3
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHH
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKML 29 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~ 29 (163)
+.+| +.+|+|||||||||++.++.
T Consensus 21 f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 21 FKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3443 88999999999999999875
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.08 E-value=1.1e-06 Score=68.33 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF 44 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~ 44 (163)
++..++|+|++|||||||++.+++.+. .+++.+.+.++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 377899999999999999999998642 36676666544
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.07 E-value=1.1e-05 Score=61.64 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=69.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPE 88 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 88 (163)
..+.+.||+|+||||+++.+...+... +...+.+... .......+...... .+...+..+.++|+++.-.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~~~~~~-~~~i~~~~~~~~~~------~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNAD---MMFVNGSDCK-IDFVRGPLTNFASA------ASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEETTTCC-HHHHHTHHHHHHHB------CCCSSCEEEEEEESCCCGG
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEcccccC-HHHHHHHHHHHHhh------cccCCCCeEEEEECCcccC
Confidence 356777889999999999998876422 2222222222 33333322211111 1122356788999997543
Q ss_pred -CcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCccc
Q psy2657 89 -VDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLR 158 (163)
Q Consensus 89 -~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~ 158 (163)
.+ ..+.|..++.... .+..++++.++... +++.+++.+..+.++.|+.+
T Consensus 119 ~~~------~~~~L~~~le~~~------------~~~~iI~~~n~~~~---l~~~l~sR~~~i~~~~~~~~ 168 (324)
T 3u61_B 119 LAE------SQRHLRSFMEAYS------------SNCSIIITANNIDG---IIKPLQSRCRVITFGQPTDE 168 (324)
T ss_dssp GHH------HHHHHHHHHHHHG------------GGCEEEEEESSGGG---SCTTHHHHSEEEECCCCCHH
T ss_pred cHH------HHHHHHHHHHhCC------------CCcEEEEEeCCccc---cCHHHHhhCcEEEeCCCCHH
Confidence 22 3344555544321 34456666665555 99999999999988888754
No 198
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.06 E-value=1.4e-06 Score=72.28 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=71.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCC-HHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTS-SEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPE 88 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 88 (163)
+++|+||+|+|||+|++.+....+.. .+..+...+.... .........+......+.+.. ....+.++|+++--.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~-~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~gil~IDEid~l~ 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRA-VYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL---ADGGIAVIDEIDKMR 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCE-ECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH---HSSSEECCTTTTCCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCc-eecCCCccccccccceeeeccccccccccCCeeEe---cCCCcEEeehhhhCC
Confidence 89999999999999999888776421 1111100000000 000000000000000000000 112467788876533
Q ss_pred CcCCCCCCHHHHHHHHHhcCCce-ecCCcceEeecceEEEEEecCCCCcc----------cCCchhhhce--eEEEEcCC
Q psy2657 89 VDAYGTVQPHTVIRQYMDYQHWY-DRQKLSLKDIHNIMFVSAMNPTSGSF----------TIEPRLQRHF--YVFALRLG 155 (163)
Q Consensus 89 ~~~~~~~~~~ellr~~~s~g~~~-~~~~~~~~~~~~~~~i~~deP~~g~~----------~l~~~~~~~~--~~~~l~~~ 155 (163)
.+ ..+.|.+.++.+.+. .+......+-.++.++++.+|..|+. .+++.+++.| ..+..+.|
T Consensus 405 ~~------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~ 478 (595)
T 3f9v_A 405 DE------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQP 478 (595)
T ss_dssp SH------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTT
T ss_pred Hh------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCC
Confidence 32 456667777766632 11112224445678999999987644 7899999888 34444544
Q ss_pred c
Q psy2657 156 L 156 (163)
Q Consensus 156 ~ 156 (163)
.
T Consensus 479 ~ 479 (595)
T 3f9v_A 479 G 479 (595)
T ss_dssp H
T ss_pred C
Confidence 3
No 199
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.06 E-value=1.9e-06 Score=63.93 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=32.0
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~ 44 (163)
...+..++|+|++||||||+++.+...+..+.+.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4567889999999999999999998877655566666444
No 200
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=2.3e-06 Score=65.98 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=23.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHh-cCCC--CCeeeeeeee
Q psy2657 9 KPVMLIGNAGSGKSILINKMLS-SLPP--ETYALTSVPF 44 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~-~~~~--g~i~~~~~~~ 44 (163)
..++|+||+|+||||+++.+.+ .+.+ |.+.+++.++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 4499999999999999999999 4433 7777776554
No 201
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.05 E-value=2.1e-06 Score=61.42 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHh
Q psy2657 10 PVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~ 30 (163)
+++|+|++||||||+++.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 202
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.04 E-value=5.7e-05 Score=57.49 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=71.9
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhcccc-ccCCceecCCC----CceEEEE
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLE-KKAGRNFGPPG----NKTMIYF 80 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~ 80 (163)
..+.+++|.||+|+|||++++.+....+....-+--.+++..+ .......+.+... .+.+..-.... ......+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~-~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~ 101 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN-ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 101 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC-HHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC-hHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEE
Confidence 4567899999999999999999987643322223334444443 2223322222110 00000000000 0123578
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcce--EeecceEEEEEecCCCC----cccCCchhhhceeEEEEcC
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIMFVSAMNPTSG----SFTIEPRLQRHFYVFALRL 154 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~~i~~deP~~g----~~~l~~~~~~~~~~~~l~~ 154 (163)
+|+++.-..+ ....|.+.+..+.+ .++.- ..-.+..+|++.++.-. ...+++.+...|+.+.+..
T Consensus 102 LDEi~~l~~~------~q~~Ll~~l~~~~~---~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~l 172 (304)
T 1ojl_A 102 LDEIGDISPL------MQVRLLRAIQEREV---QRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEM 172 (304)
T ss_dssp EESCTTCCHH------HHHHHHHHHHSSBC---CBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEEC
T ss_pred EeccccCCHH------HHHHHHHHHhcCEe---eecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEec
Confidence 9988643322 23334445565552 22222 33356778888776411 1136677777777666666
Q ss_pred Cc
Q psy2657 155 GL 156 (163)
Q Consensus 155 ~~ 156 (163)
|.
T Consensus 173 Pp 174 (304)
T 1ojl_A 173 PS 174 (304)
T ss_dssp CC
T ss_pred cC
Confidence 55
No 203
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.03 E-value=3.8e-05 Score=55.05 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|.||+|+||||+++.+...+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999887653
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.03 E-value=3.3e-06 Score=67.63 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=68.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCC-eeeeeeeecCCCCHHHHHHHHhccccccCCceecC-CCCceEEEEEec
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPET-YALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGP-PGNKTMIYFVDD 83 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 83 (163)
.+...++|.||+|+|||+|++++...+.... +.++...+.. ..... .......++.. ......+.++|+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~--------~~~g~-~~~~~~~~f~~a~~~~~~vl~iDE 235 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS--------KWLGE-SEKLVKNLFQLARENKPSIIFIDE 235 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------------------CCCTHHHHHHHHHHSCSEEEEESC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh--------hhcch-HHHHHHHHHHHHHHcCCeEEEEec
Confidence 3456799999999999999999988762111 1111111100 00000 00000001110 012236788999
Q ss_pred CCCCCC--cCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhce-eEEEEcCCcccc
Q psy2657 84 MNMPEV--DAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHF-YVFALRLGLLRI 159 (163)
Q Consensus 84 ~~l~~~--~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 159 (163)
++.-.. ..........++.+++..-+.... .-.++-+|++.++... +|+.+++.| ..+.++.|+.+.
T Consensus 236 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~------~~~~v~vI~atn~~~~---ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 236 IDSLCGSRSENESEAARRIKTEFLVQMQGVGV------DNDGILVLGATNIPWV---LDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp TTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC------CCSSCEEEEEESCGGG---SCHHHHTTCCEEEECCCCCHHH
T ss_pred hHhhccCCCCccccHHHHHHHHHHHHHhCccc------CCCCEEEEecCCCccc---cCHHHHhhcceEEEeCCcCHHH
Confidence 864211 111112233444444432210000 1134556667666655 999999998 578888887654
No 205
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.03 E-value=2.6e-06 Score=60.45 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|+||||||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999873
No 206
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.02 E-value=1.8e-05 Score=63.45 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=62.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEV 89 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 89 (163)
.++|.||+|+||||+++.+.......-+. .+... .....+...+..-.... ...+..+.++|+++.-..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~a~~-~~~~~ir~~~~~a~~~~-------~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVER---ISAVT-SGVKEIREAIERARQNR-------NAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEE---EETTT-CCHHHHHHHHHHHHHHH-------HTTCCEEEEEETTTCC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEE---EEecc-CCHHHHHHHHHHHHHhh-------hcCCCcEEEEeChhhhCH
Confidence 49999999999999999998876432111 12111 22333333332211110 123457889999865433
Q ss_pred cCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEe--cCCCCcccCCchhhhceeEEEEcCCcccc
Q psy2657 90 DAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAM--NPTSGSFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 90 ~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~d--eP~~g~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
.. ...| ...+..+. +.++++. +|... +++.+.+.+.++.++.++.+.
T Consensus 121 ~~-----q~~L-L~~le~~~--------------v~lI~att~n~~~~---l~~aL~sR~~v~~l~~l~~ed 169 (447)
T 3pvs_A 121 SQ-----QDAF-LPHIEDGT--------------ITFIGATTENPSFE---LNSALLSRARVYLLKSLSTED 169 (447)
T ss_dssp ---------CC-HHHHHTTS--------------CEEEEEESSCGGGS---SCHHHHTTEEEEECCCCCHHH
T ss_pred HH-----HHHH-HHHHhcCc--------------eEEEecCCCCcccc---cCHHHhCceeEEeeCCcCHHH
Confidence 21 1112 22224322 2233332 23334 889999999999888877654
No 207
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.02 E-value=3.9e-06 Score=58.43 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+.++.|+|++||||||+.+.+...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999988764
No 208
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.01 E-value=3.8e-06 Score=63.59 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.6
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeee
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTS 41 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~ 41 (163)
..+..++|+|||||||||+++.+...++.+.+.++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 457789999999999999999998776545555543
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=0.0001 Score=60.05 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=50.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhcccccc-CCceecC------CCCceEEEE
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK-AGRNFGP------PGNKTMIYF 80 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~ 80 (163)
...++|.||+|+||||+++.+...+. ..+...+.+...........+....... ...++.. ...+..+.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 153 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVII 153 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEE
Confidence 46899999999999999999988762 2233333344444443333322211100 0011111 224567889
Q ss_pred EecCCCCCCcCCCCCCHHHHHHHHHhc
Q psy2657 81 VDDMNMPEVDAYGTVQPHTVIRQYMDY 107 (163)
Q Consensus 81 l~~~~l~~~~~~~~~~~~ellr~~~s~ 107 (163)
+|++..-... ++...+.|.+++..
T Consensus 154 IDEid~l~~~---~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 154 MDEVDGMSGG---DRGGVGQLAQFCRK 177 (516)
T ss_dssp ECSGGGCCTT---STTHHHHHHHHHHH
T ss_pred EECCCccchh---hHHHHHHHHHHHHh
Confidence 9998532222 33344555555554
No 210
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.99 E-value=1.1e-05 Score=60.85 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecC-----CCCHHHHHHHHhccccccCCceecCCCCceEEEEE
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNF-----YTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFV 81 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (163)
.+..++|.||+|+|||++++.+...+...-+.++...+.. ..........+... .+ .+.. .....+.++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~-~~~~~vl~i 122 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA----GG-AIDA-VEQNGIVFI 122 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTT----TT-CHHH-HHHHCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHh----hH-HHhh-ccCCCEEEE
Confidence 4678999999999999999999876533223233222211 01112222222110 00 0000 012457788
Q ss_pred ecCCCCCCcCCCCCC------HHHHHHHHHhcCCceecCCcceEeecceEEEEEecCC-CCcccCCchhhhcee-EEEEc
Q psy2657 82 DDMNMPEVDAYGTVQ------PHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPT-SGSFTIEPRLQRHFY-VFALR 153 (163)
Q Consensus 82 ~~~~l~~~~~~~~~~------~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~-~g~~~l~~~~~~~~~-~~~l~ 153 (163)
|+++.-..+...... ..+.|.+.++.+.+..+.. .....+.-++++.++. .....+++.+.+.|. .+.++
T Consensus 123 DEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~ 200 (310)
T 1ofh_A 123 DEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 200 (310)
T ss_dssp ECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECC
T ss_pred EChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcC
Confidence 888643322110000 1344455566654332221 1222344555654331 223458999998885 47787
Q ss_pred CCcccc
Q psy2657 154 LGLLRI 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
.++.+.
T Consensus 201 ~~~~~~ 206 (310)
T 1ofh_A 201 ALSAAD 206 (310)
T ss_dssp CCCHHH
T ss_pred CcCHHH
Confidence 777653
No 211
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.99 E-value=2.9e-06 Score=62.20 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=26.1
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
..|..++|.|++||||||+++.+...+.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999999887654
No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.98 E-value=3.2e-06 Score=60.25 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHh
Q psy2657 10 PVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~ 30 (163)
+++|+|++||||||+++.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999988
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2e-05 Score=62.35 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=68.2
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCC---HHHHHHHHhccccccCCceecCCCCceEEEEE
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTS---SEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFV 81 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (163)
+.+..-++|.||+|||||+|++++.+.....=+.+.+-.+..... ...++..+.. .....-++.|+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~-----------Ar~~aP~IIFi 247 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVM-----------AREHAPSIIFM 247 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHH-----------HHHTCSEEEEE
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHH-----------HHHhCCceEee
Confidence 444455999999999999999999987532222222222221111 1222222210 01112377888
Q ss_pred ecCCCCCCc-CC----CCCCHHHHHHHHH---hcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhh--ce-eEE
Q psy2657 82 DDMNMPEVD-AY----GTVQPHTVIRQYM---DYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQR--HF-YVF 150 (163)
Q Consensus 82 ~~~~l~~~~-~~----~~~~~~ellr~~~---s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~--~~-~~~ 150 (163)
|++.--... .. ++......+-+++ ++-. .. .+.-++++-+-... |||.++| .| ..+
T Consensus 248 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---~~-------~~V~vIaATNrpd~---LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE---TS-------KNIKIIMATNRLDI---LDPALLRPGRIDRKI 314 (405)
T ss_dssp ESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT---CC-------CCEEEEEEESCSSS---SCHHHHSTTSSCCEE
T ss_pred ecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC---CC-------CCeEEEeccCChhh---CCHhHcCCCcCceEE
Confidence 888532111 00 1112222333332 3322 11 23445556554555 9999997 55 678
Q ss_pred EEcCCcccc
Q psy2657 151 ALRLGLLRI 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.++.|+.+.
T Consensus 315 ~i~lPd~~~ 323 (405)
T 4b4t_J 315 EFPPPSVAA 323 (405)
T ss_dssp ECCCCCHHH
T ss_pred EcCCcCHHH
Confidence 888888654
No 214
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.98 E-value=4.6e-06 Score=59.48 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+++|+|++||||||+++.+.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999887765
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.96 E-value=3.7e-06 Score=60.50 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=30.8
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhcCCC--C--Ceeeee
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPP--E--TYALTS 41 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g--~i~~~~ 41 (163)
+.+.+|.+++|+|++||||||+++.+.+.+.+ | .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 35678999999999999999999999887642 4 445544
No 216
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.96 E-value=4.9e-06 Score=58.53 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=26.1
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
...+|.+++|+|++||||||+++.+...+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999999887653
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.95 E-value=4.1e-06 Score=61.08 Aligned_cols=27 Identities=41% Similarity=0.680 Sum_probs=23.4
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHh
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
-+.+|++++|+||||||||||+..++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999775544
No 218
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.94 E-value=3.9e-06 Score=58.83 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=23.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..|..++|+|++||||||+.+.+...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999887643
No 219
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.94 E-value=0.0001 Score=55.85 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNM 86 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 86 (163)
....++|.||+|+||||+++.+...... .+ ...+.........+...+.. ......+.++|+++.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~-~~--~~~~~~~~~~~~~l~~~l~~------------~~~~~~~l~lDEi~~ 101 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGV-NL--RVTSGPAIEKPGDLAAILAN------------SLEEGDILFIDEIHR 101 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTC-CE--EEECTTTCCSHHHHHHHHTT------------TCCTTCEEEETTTTS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCC-CE--EEEeccccCChHHHHHHHHH------------hccCCCEEEEECCcc
Confidence 3468999999999999999998775421 11 11222222222222222111 112335778888864
Q ss_pred CCCcCCCCCCHHHHHHHHHhcCCcee-----cCCcce-EeecceEEEEEecCCCCcccCCchhhhce-eEEEEcCCcccc
Q psy2657 87 PEVDAYGTVQPHTVIRQYMDYQHWYD-----RQKLSL-KDIHNIMFVSAMNPTSGSFTIEPRLQRHF-YVFALRLGLLRI 159 (163)
Q Consensus 87 ~~~~~~~~~~~~ellr~~~s~g~~~~-----~~~~~~-~~~~~~~~i~~deP~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 159 (163)
-... ..+.|...+..+...- .....+ ....+..++++.+.... +++.+.+.| ..+.++.++.+.
T Consensus 102 l~~~------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~---~~~~l~~R~~~~i~l~~~~~~e 172 (324)
T 1hqc_A 102 LSRQ------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL---ITAPLLSRFGIVEHLEYYTPEE 172 (324)
T ss_dssp CCHH------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS---CSCSTTTTCSCEEECCCCCHHH
T ss_pred cccc------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCccc---CCHHHHhcccEEEecCCCCHHH
Confidence 3322 3344455555443110 000111 11234566666665555 777777777 577787776543
No 220
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.93 E-value=1.6e-05 Score=60.16 Aligned_cols=141 Identities=10% Similarity=0.081 Sum_probs=62.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCH---HHHHHHHhccccccCCceecCCCCceEEEEEec
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSS---EMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDD 83 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (163)
....++|.||+|+|||+|++++...+...-+.++.-.+...... ..+...+...... .......+.++|+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-------~~~~~~~vl~iDE 107 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEI-------IRKGNMCCLFIND 107 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHH-------HTTSSCCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHH-------HhcCCCeEEEEec
Confidence 33568888999999999999998875322233322111111111 1111111110000 0122346778888
Q ss_pred CCCCCCcCC-------CCCCHHHHHHHHHhcCCceecCCc-ceEeecceEEEEEecCCCCcccCCchhhh--ceeEEEEc
Q psy2657 84 MNMPEVDAY-------GTVQPHTVIRQYMDYQHWYDRQKL-SLKDIHNIMFVSAMNPTSGSFTIEPRLQR--HFYVFALR 153 (163)
Q Consensus 84 ~~l~~~~~~-------~~~~~~ellr~~~s~g~~~~~~~~-~~~~~~~~~~i~~deP~~g~~~l~~~~~~--~~~~~~l~ 153 (163)
+.--..... ..+.+...|.+++++......... ...-..++-+|++.+.... +|+.++| .|...+.
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~---ld~al~R~~R~d~~i~- 183 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST---LYAPLIRDGRMEKFYW- 183 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-----CHHHHHHHEEEEEE-
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc---CCHHHhCCCCCceeEe-
Confidence 843211100 011244566666664431110000 0012345667777666666 9999886 5554332
Q ss_pred CCccc
Q psy2657 154 LGLLR 158 (163)
Q Consensus 154 ~~~~~ 158 (163)
.|+.+
T Consensus 184 ~P~~~ 188 (293)
T 3t15_A 184 APTRE 188 (293)
T ss_dssp CCCHH
T ss_pred CcCHH
Confidence 45543
No 221
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.93 E-value=6.5e-06 Score=64.04 Aligned_cols=130 Identities=18% Similarity=0.288 Sum_probs=65.6
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCC---CCHHHHHHHHhccccccCCceecCCCCceEEEEEe
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFY---TSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVD 82 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (163)
.....++|.||+|+|||++++++...+...-+.++...+... .........+.. .......+.++|
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~-----------a~~~~~~vl~iD 150 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAM-----------ARENKPSIIFID 150 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHH-----------HHHTSSEEEEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHH-----------HHHcCCeEEEEe
Confidence 345569999999999999999998875321122221111110 011111211110 001234678889
Q ss_pred cCCCCCCc-CCC-CCC----HHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhce-eEEEEcCC
Q psy2657 83 DMNMPEVD-AYG-TVQ----PHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHF-YVFALRLG 155 (163)
Q Consensus 83 ~~~l~~~~-~~~-~~~----~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~-~~~~l~~~ 155 (163)
+++.-... ... ... ..++|.. +++-. . .-.++-+|++.+.... +|+.+++.| ..+.++.|
T Consensus 151 Eid~l~~~r~~~~~~~~~~~~~~ll~~-l~~~~---~------~~~~v~vI~atn~~~~---ld~al~rRf~~~i~i~~P 217 (355)
T 2qp9_X 151 QVDALTGTRGEGESEASRRIKTELLVQ-MNGVG---N------DSQGVLVLGATNIPWQ---LDSAIRRRFERRIYIPLP 217 (355)
T ss_dssp CGGGGTC------CTHHHHHHHHHHHH-HHHCC------------CCEEEEEEESCGGG---SCHHHHHTCCEEEECCCC
T ss_pred chHhhcccCCCCcchHHHHHHHHHHHH-hhccc---c------cCCCeEEEeecCCccc---CCHHHHcccCEEEEeCCc
Confidence 88632211 000 111 2222222 22211 0 0123556666666555 999999888 77788888
Q ss_pred cccc
Q psy2657 156 LLRI 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.+.
T Consensus 218 ~~~~ 221 (355)
T 2qp9_X 218 DLAA 221 (355)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.91 E-value=5.1e-06 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.+|..++|+|++|+|||||++.+.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999999885
No 223
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.91 E-value=4.1e-06 Score=63.77 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.2
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
|++-.++..++|+|++|+|||||++.+++.
T Consensus 2 ~v~~~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 2 SIDKSYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp --CCCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CcccccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 444445568999999999999999999986
No 224
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.91 E-value=3e-05 Score=63.08 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=25.2
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+..|.+++|.||+|+|||+|++.+.....
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34578999999999999999999988764
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.89 E-value=3.6e-06 Score=64.11 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=34.0
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeeec
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPFN 45 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~~ 45 (163)
++..+ +++++++|++|+||||++..+.+.+. .+++.+.+.+..
T Consensus 93 ~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 93 IPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45555 89999999999999999999988753 367777766543
No 226
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.89 E-value=7.1e-06 Score=62.87 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
....++|.||+|+|||++++++.....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 345699999999999999999987753
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.88 E-value=6.9e-06 Score=56.62 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|+|++||||||+++.+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887764
No 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.87 E-value=6e-06 Score=61.01 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=25.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeee
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTS 41 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~ 41 (163)
...++|+||+||||||+++++.+.+...-+.+++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 4459999999999999999998875422344443
No 229
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.86 E-value=1.1e-05 Score=56.41 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=24.6
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+..+.+++|+|++||||||+++.+...+
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34577899999999999999999887654
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.86 E-value=7e-06 Score=65.44 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCC--CCeeeeeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPP--ETYALTSVPF 44 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~--g~i~~~~~~~ 44 (163)
++++++++|++||||||++..+.+.+.+ +++.+.+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 7899999999999999999999887543 6777776554
No 231
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=4e-05 Score=61.28 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=24.3
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+.+-.-++|.||+|||||+|++++.+...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44455699999999999999999988753
No 232
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.84 E-value=9.4e-06 Score=57.07 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=24.0
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+..+.+++|+|++||||||+++.+...+
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3567889999999999999999887654
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.82 E-value=1.1e-05 Score=56.82 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
-.+++|+|++|||||||++.+++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998864
No 234
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.81 E-value=1.4e-05 Score=56.72 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.6
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+|..++|+|++||||||+++.+...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998876
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.81 E-value=9.4e-06 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|+||+||||||+++.+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 6899999999999999988 443
No 236
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.81 E-value=1.2e-05 Score=56.42 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
|.+++|+|++||||||+++.+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999886644
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.81 E-value=8.8e-06 Score=63.35 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=26.9
Q ss_pred cccccCCcc--EEEEcCCCCcHHHHHHHHHhcC
Q psy2657 2 NLFIPKRKP--VMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 2 ~l~i~~ge~--v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
++.+++|+. ++|+|++||||||+.+.+.+.+
T Consensus 16 ~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456788998 9999999999999999887753
No 238
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.80 E-value=1.1e-05 Score=55.55 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 239
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.78 E-value=2.9e-05 Score=60.03 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+|..++|.||+|+|||++++.+...+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999987654
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.77 E-value=1.5e-05 Score=58.34 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+|.+++|+|++||||||+.+.+.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999888743
No 241
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.77 E-value=1.5e-05 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+..++|+|++||||||+.+.+...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999887654
No 242
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.76 E-value=2.2e-05 Score=63.89 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=35.8
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc----CCCCCeeeeeeeec
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS----LPPETYALTSVPFN 45 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~----~~~g~i~~~~~~~~ 45 (163)
.+.+.++.+++|.|.+||||||++++++.. ..|+++.+...+++
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 467788999999999999999999987652 35688888776654
No 243
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=4.8e-05 Score=51.43 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=24.7
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
..+.++.|.||+|+|||++++.+.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 5678999999999999999999987643
No 244
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.76 E-value=1.3e-05 Score=57.49 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=19.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHH
Q psy2657 9 KPVMLIGNAGSGKSILINKML 29 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~ 29 (163)
.+.+|+|||||||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 488999999999999999774
No 245
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.76 E-value=8.4e-05 Score=56.92 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=45.5
Q ss_pred eEEEEEecCCCCCCcCCCCCCHHHHHHHHHhcCCc-eecCCcceEeecceEEEEEecCCC-CcccCCchhhhceeE-EEE
Q psy2657 76 TMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHW-YDRQKLSLKDIHNIMFVSAMNPTS-GSFTIEPRLQRHFYV-FAL 152 (163)
Q Consensus 76 ~~~~~l~~~~l~~~~~~~~~~~~ellr~~~s~g~~-~~~~~~~~~~~~~~~~i~~deP~~-g~~~l~~~~~~~~~~-~~l 152 (163)
..+.++|+++.-..+ ..+.|.+.+..+.. +.+.......-.+..++++.+|.. . +++.+.+.|.. +.+
T Consensus 145 ~~vl~iDEi~~l~~~------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~---l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGD---LRPQLLDRFGLSVEV 215 (350)
T ss_dssp TEEEEETTGGGSCHH------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCC---CCHHHHTTCSEEEEC
T ss_pred CCEEEEeChhhCCHH------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCC---CCHHHHhhcceEEEc
Confidence 357788888643322 44566666676541 222222223334677788888754 5 89999999876 788
Q ss_pred cCCcc
Q psy2657 153 RLGLL 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
+.|++
T Consensus 216 ~~~~~ 220 (350)
T 1g8p_A 216 LSPRD 220 (350)
T ss_dssp CCCCS
T ss_pred CCCCc
Confidence 88754
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.75 E-value=6.6e-05 Score=63.76 Aligned_cols=139 Identities=14% Similarity=0.223 Sum_probs=75.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccc----cCCceecC-CCCceEEEEEecC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEK----KAGRNFGP-PGNKTMIYFVDDM 84 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~l~~~ 84 (163)
.++|+||+|+|||++++.+...+.. .+.-.+++...........+..+... ..+.+.+. ......+.++|++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~---~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGI---ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC---EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcC---CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCc
Confidence 6899999999999999988776521 12222222221100000000000000 00000000 0012467889998
Q ss_pred CCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCC----------------------cccCCch
Q psy2657 85 NMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG----------------------SFTIEPR 142 (163)
Q Consensus 85 ~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g----------------------~~~l~~~ 142 (163)
+-...+ +.+.|.+.++.|.+.+..-. ..-..++-+|++.++... ...++|.
T Consensus 567 ~~~~~~------~~~~Ll~~le~~~~~~~~g~-~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 639 (758)
T 1r6b_X 567 EKAHPD------VFNILLQVMDNGTLTDNNGR-KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639 (758)
T ss_dssp GGSCHH------HHHHHHHHHHHSEEEETTTE-EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHH
T ss_pred cccCHH------HHHHHHHHhcCcEEEcCCCC-EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHH
Confidence 644333 77889999998887664421 133366778888776431 0147788
Q ss_pred hhhce-eEEEEcCCccc
Q psy2657 143 LQRHF-YVFALRLGLLR 158 (163)
Q Consensus 143 ~~~~~-~~~~l~~~~~~ 158 (163)
+...| ..+.++.++.+
T Consensus 640 l~~R~~~~i~~~~l~~~ 656 (758)
T 1r6b_X 640 FRNRLDNIIWFDHLSTD 656 (758)
T ss_dssp HHTTCSEEEECCCCCHH
T ss_pred HHhhCCcceeeCCCCHH
Confidence 88888 55666666554
No 247
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.74 E-value=1.4e-05 Score=59.36 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+++|+||+||||||+.+.+.+.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999987764
No 248
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.74 E-value=0.0001 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.+..++|.||+|+|||++++.+.....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 457899999999999999999987753
No 249
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.74 E-value=9.7e-06 Score=65.35 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=27.5
Q ss_pred ceEEEEEecCCCC--cccCCchhhhceeEEEEcCCcccc
Q psy2657 123 NIMFVSAMNPTSG--SFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 123 ~~~~i~~deP~~g--~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
+..+|++.++... ...+++.+.+.|..+.++.|+.+.
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~ 329 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDE 329 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHH
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHH
Confidence 3456777666542 125899999999999999998765
No 250
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.74 E-value=5.4e-05 Score=64.73 Aligned_cols=132 Identities=17% Similarity=0.284 Sum_probs=68.3
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCC---HHHHHHHHhccccccCCceecCCCCceEEEE
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTS---SEMLQKVLEKPLEKKAGRNFGPPGNKTMIYF 80 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (163)
-+.+-.-++|.||+|||||+|+|++.+.+..--+.+++.++..... ...++..+.. .....-++.|
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~-----------A~~~~PsIIf 302 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE-----------AEKNAPAIIF 302 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHH-----------HTTSCSEEEE
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHH-----------HHHcCCeEEE
Confidence 3445566999999999999999999988643223333322222111 1122222211 1122347788
Q ss_pred EecCCCC--CCcCCCCCCHHHHHHHHH---hcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhh--ce-eEEEE
Q psy2657 81 VDDMNMP--EVDAYGTVQPHTVIRQYM---DYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQR--HF-YVFAL 152 (163)
Q Consensus 81 l~~~~l~--~~~~~~~~~~~ellr~~~---s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~--~~-~~~~l 152 (163)
+|++..- ..+.-....-..++.+++ ++-. .+ ..+-+|.+-+-... ||+.++| .| ..+.+
T Consensus 303 IDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~--~~--------~~V~VIaaTN~~d~---LD~ALrR~GRFd~~I~i 369 (806)
T 3cf2_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK--QR--------AHVIVMAATNRPNS---IDPALRRFGRFDREVDI 369 (806)
T ss_dssp EESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC--GG--------GCEEEEEECSSTTT---SCTTTTSTTSSCEEEEC
T ss_pred EehhcccccccCCCCChHHHHHHHHHHHHHhccc--cc--------CCEEEEEecCChhh---cCHHHhCCcccceEEec
Confidence 8888531 111111122223333332 2211 01 12344455443445 9999987 45 56788
Q ss_pred cCCcccc
Q psy2657 153 RLGLLRI 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
+.|+...
T Consensus 370 ~~Pd~~~ 376 (806)
T 3cf2_A 370 GIPDATG 376 (806)
T ss_dssp CCCCHHH
T ss_pred CCCCHHH
Confidence 8887654
No 251
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.73 E-value=2.5e-05 Score=55.27 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=24.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALT 40 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~ 40 (163)
+..+++|+|++||||||+.+.+... |-..++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~---g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW---GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT---TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC---CCEEEc
Confidence 4567999999999999999988876 444444
No 252
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.73 E-value=1.8e-05 Score=55.01 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|+|++||||||+.+.+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999987754
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.73 E-value=1.7e-05 Score=55.01 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHh
Q psy2657 9 KPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~ 30 (163)
.+++|+|++||||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999887
No 254
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.72 E-value=1.9e-05 Score=56.92 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHh
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
.+-+++|+|++||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 255
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.72 E-value=1.7e-05 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999884
No 256
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.71 E-value=1.5e-05 Score=55.76 Aligned_cols=22 Identities=36% Similarity=0.880 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999885
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.71 E-value=1.4e-05 Score=68.82 Aligned_cols=129 Identities=16% Similarity=0.296 Sum_probs=62.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCC-------CeeeeeeeecCCCCH--------HHHHHHHhccccccCCceecC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPE-------TYALTSVPFNFYTSS--------EMLQKVLEKPLEKKAGRNFGP 71 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g-------~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 71 (163)
....++|+||+|+||||+++.+...+..+ ...+...+++..... ..+...+. .. .
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~----~~------~ 259 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQ----EV------V 259 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHH----HH------H
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHH----HH------H
Confidence 34578999999999999999887764211 112222222221100 01111111 00 0
Q ss_pred CCCceEEEEEecCCCCC-C-cCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCC-cccCCchhhhcee
Q psy2657 72 PGNKTMIYFVDDMNMPE-V-DAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG-SFTIEPRLQRHFY 148 (163)
Q Consensus 72 ~~~~~~~~~l~~~~l~~-~-~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g-~~~l~~~~~~~~~ 148 (163)
......+.++|+++.-. . ...+.....++|+.++..+. ..+|.+..+... ...+|+.+.+.|.
T Consensus 260 ~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~--------------i~~I~at~~~~~~~~~~d~aL~rRf~ 325 (854)
T 1qvr_A 260 QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE--------------LRLIGATTLDEYREIEKDPALERRFQ 325 (854)
T ss_dssp TTCSSEEEEECCC-------------------HHHHHTTC--------------CCEEEEECHHHHHHHTTCTTTCSCCC
T ss_pred hcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCC--------------eEEEEecCchHHhhhccCHHHHhCCc
Confidence 11234778899986422 1 11122345566677666554 224444333211 1237888999999
Q ss_pred EEEEcCCcccc
Q psy2657 149 VFALRLGLLRI 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
.+.++.|+.+.
T Consensus 326 ~i~l~~p~~~e 336 (854)
T 1qvr_A 326 PVYVDEPTVEE 336 (854)
T ss_dssp CEEECCCCHHH
T ss_pred eEEeCCCCHHH
Confidence 99999998764
No 258
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.70 E-value=6.7e-07 Score=61.37 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--------EeecceEEEEEecCCCCcccCCchhhhcee
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--------KDIHNIMFVSAMNPTSGSFTIEPRLQRHFY 148 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--------~~~~~~~~i~~deP~~g~~~l~~~~~~~~~ 148 (163)
++++.+| |+|+ +|++++ +++.+|+++++||||+| ||+..+..+.
T Consensus 52 ~~~~~~L-----SgGe---~qrv~lA~~Lalaral~~~p~lllLDEPt~~---LD~~~~~~l~ 103 (148)
T 1f2t_B 52 ERPLTFL-----SGGE---RIALGLAFRLAMSLYLAGEISLLILDEPTPY---LDEERRRKLI 103 (148)
T ss_dssp EECGGGS-----CHHH---HHHHHHHHHHHHHHHHHSSCSEEEEESCSCT---TCHHHHHHHH
T ss_pred cCChhHC-----CHHH---HHHHHHHhhhHHHHHHcCCCCEEEEECCCcc---CCHHHHHHHH
Confidence 5678889 9999 999976 46688999999999999 9987766553
No 259
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.70 E-value=2e-05 Score=55.46 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=24.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+.++.+++|+|++||||||+.+.+...+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999887654
No 260
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.68 E-value=6.2e-05 Score=58.33 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=28.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCC-CeeeeeeeecCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPE-TYALTSVPFNFYTS 49 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g-~i~~~~~~~~~~~~ 49 (163)
+++|+||+|+||||+++.+.+.+.+. ...+...++.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 89999999999999999998876543 23333444434333
No 261
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.68 E-value=2.3e-05 Score=62.57 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|+||||||||++.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999873
No 262
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=8.4e-05 Score=59.72 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.5
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+..-.-++|.||+|||||+|++++.+...
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 44555699999999999999999998753
No 263
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.67 E-value=1.9e-05 Score=61.51 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.6
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC--CCCCe
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL--PPETY 37 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~g~i 37 (163)
+.+|+++.|.||+|||||||+..++... ..|.+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 5789999999999999999999888764 23555
No 264
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.66 E-value=2.4e-05 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|++||||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999988754
No 265
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.66 E-value=2.9e-05 Score=60.36 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=22.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc--CCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS--LPPE 35 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~--~~~g 35 (163)
.++|+|++|||||||++.++|. ++.|
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 7899999999999999999994 4544
No 266
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.66 E-value=2.5e-05 Score=55.57 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+|..++|+|++||||||+++.+...+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999877543
No 267
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.66 E-value=3.2e-05 Score=55.14 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=23.6
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
...|.+++|+|++||||||+++.+...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999999988654
No 268
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.66 E-value=2.7e-05 Score=56.20 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+..++|.||+|+||||+++.+...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887764
No 269
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.65 E-value=2.8e-05 Score=55.51 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=23.7
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+|.+++|+|++||||||+++.+...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999887643
No 270
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.63 E-value=2.8e-05 Score=57.20 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..-+++|.||+||||||+++.+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999887654
No 271
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.63 E-value=3.1e-05 Score=58.25 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=24.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.+..++|.||+|+||||+++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988763
No 272
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=5.7e-05 Score=60.18 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=24.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+....-++|.||+|||||+|++++.+...
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 34445599999999999999999998753
No 273
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=3.9e-05 Score=57.98 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=63.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCC-C-CeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPP-E-TYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMP 87 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~-g-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 87 (163)
.++|.||+|+||||+++.+...+.. + ...+...+.+...........+....... . .....+..+.++|+++.-
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~--~~~~~~~~viiiDe~~~l 119 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK--L--HLPPGKHKIVILDEADSM 119 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBC--C--CCCTTCCEEEEEESGGGS
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhcc--c--cCCCCCceEEEEECcccC
Confidence 3999999999999999988766421 1 11111111112112233332222111000 0 011234677888887542
Q ss_pred CCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCcccc
Q psy2657 88 EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 88 ~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
... ..+.|..++.... .+..++++.++... +.+.+.+.+..+.+..++.+.
T Consensus 120 ~~~------~~~~L~~~le~~~------------~~~~~il~~~~~~~---l~~~l~sr~~~i~~~~~~~~~ 170 (323)
T 1sxj_B 120 TAG------AQQALRRTMELYS------------NSTRFAFACNQSNK---IIEPLQSQCAILRYSKLSDED 170 (323)
T ss_dssp CHH------HHHTTHHHHHHTT------------TTEEEEEEESCGGG---SCHHHHTTSEEEECCCCCHHH
T ss_pred CHH------HHHHHHHHHhccC------------CCceEEEEeCChhh---chhHHHhhceEEeecCCCHHH
Confidence 221 2233344444322 23445555444444 788888778888887776653
No 274
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.62 E-value=7.5e-06 Score=66.76 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=31.9
Q ss_pred HhcCCceecCCcce--Eeecce--EEEEEecCCCCcccCCchhhhce
Q psy2657 105 MDYQHWYDRQKLSL--KDIHNI--MFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 105 ~s~g~~~~~~~~~~--~~~~~~--~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
+|+|+ +|++++ +++.+| +++++|||++| ||+.....+
T Consensus 398 ~SgG~---~qrv~la~~l~~~~~~~~lilDEp~~g---ld~~~~~~i 438 (517)
T 4ad8_A 398 ASGGE---LSRVMLAVSTVLGADTPSVVFDEVDAG---IGGAAAIAV 438 (517)
T ss_dssp SCSSH---HHHHHHHHHHHHCCCSSEEEECSCSSS---CCTHHHHHH
T ss_pred CCHHH---HHHHHHHHHHHhCCCCCEEEEeCCcCC---CCHHHHHHH
Confidence 39999 999888 788899 99999999999 998766554
No 275
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.62 E-value=6.1e-06 Score=70.17 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=28.2
Q ss_pred ceEEEEEecCCCC--cccCCchhhhceeEEEEcCCcccc
Q psy2657 123 NIMFVSAMNPTSG--SFTIEPRLQRHFYVFALRLGLLRI 159 (163)
Q Consensus 123 ~~~~i~~deP~~g--~~~l~~~~~~~~~~~~l~~~~~~~ 159 (163)
+..+|.+.++... ...+|+.+.+.|..+.++.|+.+.
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~ 329 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDE 329 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHH
T ss_pred CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHH
Confidence 3557777776652 235999999999999999998765
No 276
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.61 E-value=3e-05 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|+|++||||||+++.+...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887654
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.61 E-value=3.2e-05 Score=54.19 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+.+++|+|++||||||+.+.+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999886643
No 278
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.61 E-value=1.3e-05 Score=57.27 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|+|++||||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887765
No 279
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.60 E-value=2e-05 Score=55.56 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=23.8
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
++.+.+++|+|++||||||+.+.+...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999887654
No 280
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.60 E-value=3.2e-05 Score=56.49 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|++|+|||||++.++|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999999863
No 281
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.59 E-value=2.9e-05 Score=61.18 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=27.3
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+.+.+|+.++|+||+|||||||++.+.+.+
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4678899999999999999999999887753
No 282
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.57 E-value=4.1e-05 Score=61.90 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=21.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..++|+||+|+|||||++++.+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 349999999999999999998864
No 283
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.57 E-value=2.8e-05 Score=54.19 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=18.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
++.+++|+|++||||||+.+.+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999887654
No 284
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.56 E-value=3.8e-05 Score=55.69 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=22.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++..++|+|++||||||+++.+...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999887655
No 285
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.56 E-value=4.7e-05 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+.++.|.||+|+|||||++.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999998765
No 286
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.56 E-value=4.5e-05 Score=58.86 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..++.++|.||+|+|||||++.+.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998865
No 287
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.56 E-value=4.3e-05 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.+++|+|++|||||||+..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4689999999999999999887653
No 288
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.55 E-value=2e-05 Score=55.92 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=22.7
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHh
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
++..++. .++++|++|+|||||++.+.+
T Consensus 20 ~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 20 GLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred hccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3445555 478999999999999998876
No 289
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.55 E-value=3.3e-05 Score=60.38 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHhcCCceecCCcce--------Eeecc-eEEEEEecCCCCcccCCchhhhce
Q psy2657 95 VQPHTVIRQYMDYQHWYDRQKLSL--------KDIHN-IMFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 95 ~~~~ellr~~~s~g~~~~~~~~~~--------~~~~~-~~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
.++.++ |+|+ ++++++ ++..+ |+++++|||+++ ||+.....+
T Consensus 276 ~~~~~l-----S~G~---~~~~~lal~la~a~~l~~~~~~~lllDEp~~~---LD~~~~~~l 326 (371)
T 3auy_A 276 LTIDNL-----SGGE---QIAVALSLRLAIANALIGNRVECIILDEPTVY---LDENRRAKL 326 (371)
T ss_dssp ECGGGS-----CHHH---HHHHHHHHHHHHHHHHHSSCCSEEEEESTTTT---CCHHHHHHH
T ss_pred cchHhc-----CHHH---HHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCc---CCHHHHHHH
Confidence 345556 8888 887643 44668 999999999999 998766444
No 290
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.54 E-value=4.9e-05 Score=53.93 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+.|.||+|+|||||++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999988764
No 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.54 E-value=5.2e-05 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+..++|+|++||||||+.+.+...+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999887654
No 292
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.54 E-value=2.2e-05 Score=67.26 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=32.7
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeee
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVP 43 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~ 43 (163)
++.+.+++.++|+||+|||||||++++.+.+..+-+.+++..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 345678899999999999999999999887655445554433
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.54 E-value=5.2e-05 Score=54.66 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+|-.++|+|++||||||+.+.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999887654
No 294
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.54 E-value=5.5e-05 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.+++|+|++||||||+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988664
No 295
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.54 E-value=4.2e-05 Score=59.46 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=28.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC--CCCCeeeee
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL--PPETYALTS 41 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~--~~g~i~~~~ 41 (163)
+.+|+++.|.||+|||||||+..++... +.+.+.+..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5789999999999999999998776542 234544433
No 296
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.53 E-value=8.5e-05 Score=60.26 Aligned_cols=28 Identities=18% Similarity=0.496 Sum_probs=24.2
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+.....++|.||+|+|||++++++....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998775
No 297
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.53 E-value=4.4e-05 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|++|||||||++.+.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 298
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=7e-05 Score=56.65 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=61.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCC--HHHHHHHHhccccccCCceecCCCCceEEEEEecCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTS--SEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMP 87 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 87 (163)
+++|.||+|+||||+++.+...+........-..++.... .......+.... . .... ...+..+.++|+++.-
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~---~~~~~~vliiDe~~~l 122 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFA-R-TKPI---GGASFKIIFLDEADAL 122 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHH-H-SCCG---GGCSCEEEEEETGGGS
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHH-h-hCCc---CCCCCeEEEEeCCCcC
Confidence 5999999999999999988776421110001111211111 011111111100 0 0000 1134567788887543
Q ss_pred CCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEcCCccc
Q psy2657 88 EVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLGLLR 158 (163)
Q Consensus 88 ~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~~~~~~ 158 (163)
..+ ..+.|..++.... .+..++++.+.... +.+.+.+.+..+.+..++.+
T Consensus 123 ~~~------~~~~L~~~le~~~------------~~~~~i~~~~~~~~---l~~~l~sr~~~~~~~~l~~~ 172 (327)
T 1iqp_A 123 TQD------AQQALRRTMEMFS------------SNVRFILSCNYSSK---IIEPIQSRCAIFRFRPLRDE 172 (327)
T ss_dssp CHH------HHHHHHHHHHHTT------------TTEEEEEEESCGGG---SCHHHHHTEEEEECCCCCHH
T ss_pred CHH------HHHHHHHHHHhcC------------CCCeEEEEeCCccc---cCHHHHhhCcEEEecCCCHH
Confidence 222 3344555555432 23345555443333 77777777777777666544
No 299
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.51 E-value=6.5e-05 Score=53.35 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=22.6
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+-+++|+|++||||||+++.+...+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999887654
No 300
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.51 E-value=4.5e-05 Score=52.76 Aligned_cols=130 Identities=13% Similarity=0.242 Sum_probs=65.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCC-------CeeeeeeeecC----CCCHHHHHHHHhccccccCCceecCCCCc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPE-------TYALTSVPFNF----YTSSEMLQKVLEKPLEKKAGRNFGPPGNK 75 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g-------~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (163)
.+..++|+||+|+||||+++.+...+... ...+...++.. ..........+...+.. .. ....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~ 115 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKE----VQ--DAEG 115 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHH----HH--HTTT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHH----HH--hcCC
Confidence 45678999999999999999887654210 11111111110 00011111111100000 00 0123
Q ss_pred eEEEEEecCCCCC-Cc--CCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCC--cccCCchhhhceeEE
Q psy2657 76 TMIYFVDDMNMPE-VD--AYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG--SFTIEPRLQRHFYVF 150 (163)
Q Consensus 76 ~~~~~l~~~~l~~-~~--~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g--~~~l~~~~~~~~~~~ 150 (163)
..+.++|+++.-. .. ........+++..++..+. ..++++.++... ...+++.+.+.|..+
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~ii~~~~~~~~~~~~~~~~~l~~R~~~i 181 (187)
T 2p65_A 116 QVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGE--------------LRCIGATTVSEYRQFIEKDKALERRFQQI 181 (187)
T ss_dssp SEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTC--------------SCEEEEECHHHHHHHTTTCHHHHHHEEEE
T ss_pred ceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCC--------------eeEEEecCHHHHHHHHhccHHHHHhcCcc
Confidence 4678899886432 11 1112446666666665432 234444443220 123899999999988
Q ss_pred EEcCCc
Q psy2657 151 ALRLGL 156 (163)
Q Consensus 151 ~l~~~~ 156 (163)
.++.|+
T Consensus 182 ~i~~p~ 187 (187)
T 2p65_A 182 LVEQPS 187 (187)
T ss_dssp ECCSCC
T ss_pred cCCCCC
Confidence 887764
No 301
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.51 E-value=3.7e-05 Score=56.15 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.5
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHH
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKML 29 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~ 29 (163)
+.+|+.++++||+||||||++...+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999999999888554
No 302
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.50 E-value=5.5e-05 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.2
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++..++|+|++||||||+++.+...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999988765
No 303
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.50 E-value=6e-05 Score=53.51 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=22.7
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+..+++|+|++||||||+.+.+...+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999887654
No 304
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.50 E-value=6.4e-05 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+++|+|++||||||+.+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999887653
No 305
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.50 E-value=5.9e-05 Score=51.96 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=21.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.-++++|+|+.||||||+.+.+...+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999886643
No 306
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.50 E-value=5.5e-05 Score=53.18 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=20.6
Q ss_pred ccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 3 LFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 3 l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+..++. .++++|++|+|||||++.+.+.
T Consensus 19 ~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 19 LWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred ccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 333444 6899999999999999999874
No 307
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.49 E-value=5.4e-05 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|++||||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999886654
No 308
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.49 E-value=5.7e-05 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|.|++||||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887754
No 309
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.48 E-value=6.5e-05 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 310
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.48 E-value=4.5e-05 Score=64.09 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=25.4
Q ss_pred cccccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 2 ~l~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++.+++++.++|+|++|+|||||++.+++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 467889999999999999999999999865
No 311
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.48 E-value=6.4e-05 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++++|++|||||||++.+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998863
No 312
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.47 E-value=5.6e-05 Score=54.23 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+||+||||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887654
No 313
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.46 E-value=7.6e-05 Score=58.94 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.5
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.+..+..++|+|++|+|||||++.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567889999999999999999999886
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.45 E-value=6.6e-05 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|.|++||||||+.+.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999887754
No 315
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.45 E-value=7.5e-05 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999988765
No 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.45 E-value=7.6e-05 Score=50.37 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999876
No 317
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.45 E-value=7e-05 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999875
No 318
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.44 E-value=6.7e-05 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+++|+|++||||||+.+.+...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999887654
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.44 E-value=7.2e-05 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+++|+|++||||||+.+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887754
No 320
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.44 E-value=4e-05 Score=58.03 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++-+++|.||+||||||+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999987654
No 321
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.44 E-value=7.7e-05 Score=58.55 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.+..++|+||+||||||+++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988775
No 322
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.43 E-value=8.8e-05 Score=53.91 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=24.6
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+++..++.|+||+||||+|.++.+...+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35677789999999999999999887654
No 323
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.43 E-value=8.1e-05 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 324
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.43 E-value=8.1e-05 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999875
No 325
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.43 E-value=8.3e-05 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998863
No 326
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.43 E-value=0.001 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887754
No 327
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=8.1e-05 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 328
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.43 E-value=7.6e-05 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999998875
No 329
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.42 E-value=8.4e-05 Score=54.68 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.9
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++-.++|+||+||||||+++.+...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999887643
No 330
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.42 E-value=8.5e-05 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 331
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.42 E-value=6.9e-05 Score=58.56 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.2
Q ss_pred CCcc-EEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKP-VMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~-v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.|-. ++|+|++|||||||++.+.+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3555 9999999999999999998863
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.42 E-value=8.3e-05 Score=51.04 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|++||||||+.+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887643
No 333
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.42 E-value=8.7e-05 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.821 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 334
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.41 E-value=8.2e-05 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.774 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.41 E-value=8.8e-05 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.747 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988875
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.40 E-value=9.2e-05 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 337
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.39 E-value=4.1e-05 Score=56.74 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=22.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.....++|.||+|+|||++++++....
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 334558999999999999999998764
No 338
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.39 E-value=5e-05 Score=60.64 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=29.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC--CCCeeeeeeee
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP--PETYALTSVPF 44 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g~i~~~~~~~ 44 (163)
++.+++++||+||||||++..+...+. .+++.+.+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 478999999999999999998887653 35676655543
No 339
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.39 E-value=6.6e-05 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3799999999999999998765
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.39 E-value=9.3e-05 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.39 E-value=8.1e-05 Score=54.90 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
-+++|+|++||||||+.+.+...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999887644
No 342
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.38 E-value=0.0026 Score=60.64 Aligned_cols=134 Identities=12% Similarity=0.115 Sum_probs=83.5
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDM 84 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (163)
+..+...++.||.|+|||++++.+...+..- +--.+++..........++.+-... -....+|.+
T Consensus 642 l~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~---~v~~nc~e~ld~~~lg~~~~g~~~~------------Gaw~~~DE~ 706 (2695)
T 4akg_A 642 LHQKYGGCFFGPAGTGKTETVKAFGQNLGRV---VVVFNCDDSFDYQVLSRLLVGITQI------------GAWGCFDEF 706 (2695)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHTTTCC---CEEEETTSSCCHHHHHHHHHHHHHH------------TCEEEEETT
T ss_pred HHhCCCCcccCCCCCCcHHHHHHHHHHhCCc---EEEEECCCCCChhHhhHHHHHHHhc------------CCEeeehhh
Confidence 3456778999999999999999998886422 2234566665555554443321111 134567888
Q ss_pred CCCCCcCCCCCCHHHHH----H---HHHhcCC-ceecCCcceEeecceEEEEEecCCC-CcccCCchhhhceeEEEEcCC
Q psy2657 85 NMPEVDAYGTVQPHTVI----R---QYMDYQH-WYDRQKLSLKDIHNIMFVSAMNPTS-GSFTIEPRLQRHFYVFALRLG 155 (163)
Q Consensus 85 ~l~~~~~~~~~~~~ell----r---~~~s~g~-~~~~~~~~~~~~~~~~~i~~deP~~-g~~~l~~~~~~~~~~~~l~~~ 155 (163)
|....+ +...+ + ..+..++ ...-.-..+.+-.++.+++.++|.. |+..|++.+++.|..+.+..|
T Consensus 707 nr~~~e------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~P 780 (2695)
T 4akg_A 707 NRLDEK------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSP 780 (2695)
T ss_dssp TSSCHH------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCC
T ss_pred hhcChH------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCC
Confidence 775544 22332 1 1122222 0000111235556778999999964 478999999999999999998
Q ss_pred cccc
Q psy2657 156 LLRI 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.+.
T Consensus 781 d~~~ 784 (2695)
T 4akg_A 781 QSGT 784 (2695)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 343
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.38 E-value=0.00013 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.6
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++.-.++++|++|+|||||++.+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567999999999999999999874
No 344
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.38 E-value=8.3e-05 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++++|++|+|||||++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 345
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.38 E-value=0.0001 Score=55.54 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+.+++|.||+|+|||++++.+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999776653
No 346
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.37 E-value=0.0001 Score=57.07 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=25.1
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-+.+|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999988764
No 347
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.37 E-value=9.4e-05 Score=50.39 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q psy2657 11 VMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++++|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999998764
No 348
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.36 E-value=8.7e-05 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999886
No 349
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.36 E-value=5.5e-05 Score=51.09 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.2
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+.++.|.||+|+|||++++.+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 457789999999999999999886654
No 350
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.35 E-value=0.0001 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+++.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999986
No 351
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.35 E-value=0.00011 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|+.|+|||||++.+++.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999886
No 352
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.35 E-value=0.00011 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 353
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.35 E-value=0.00012 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 354
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.35 E-value=8.6e-05 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999775
No 355
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.34 E-value=0.00011 Score=50.94 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.34 E-value=0.00011 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.-+++|+|+.||||||+.+.+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999988765
No 357
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.34 E-value=0.00012 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 358
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.34 E-value=0.00011 Score=58.67 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+.++.|.||+|+|||||++++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 359
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.33 E-value=0.00013 Score=49.76 Aligned_cols=25 Identities=16% Similarity=0.554 Sum_probs=21.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.-.++++|++|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3346899999999999999999764
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.33 E-value=0.00012 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 361
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.33 E-value=0.00012 Score=52.63 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.4
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
-.|..++|+||+|+|||||+..+....
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 457889999999999999999887764
No 362
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.32 E-value=9.9e-05 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999875
No 363
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.32 E-value=8.6e-05 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.-.++++|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999998875
No 364
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.32 E-value=0.00013 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q psy2657 11 VMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999988764
No 365
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.32 E-value=0.00013 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999988765
No 366
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.32 E-value=0.00011 Score=55.07 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|||||||++.+.|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 367
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.31 E-value=0.00014 Score=57.71 Aligned_cols=27 Identities=37% Similarity=0.585 Sum_probs=23.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+..+++|+|++||||||+++.+...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457889999999999999999887654
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.31 E-value=0.00013 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 369
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=0.00014 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 370
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.30 E-value=0.00014 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999875
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.30 E-value=0.00014 Score=52.45 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+|-.++|+|++||||||+++.+...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999887654
No 372
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.30 E-value=0.00015 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.++|+|++|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 489999999999999998887653
No 373
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.30 E-value=0.00015 Score=58.19 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=31.5
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcCC--CC-Ceeeeeeee
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLP--PE-TYALTSVPF 44 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~~--~g-~i~~~~~~~ 44 (163)
-+.+|+.++|.|++|+|||||+..++.... .| .+.+...+.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 478999999999999999999998877642 24 565554443
No 374
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.30 E-value=0.00014 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 375
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.29 E-value=0.00015 Score=50.75 Aligned_cols=22 Identities=41% Similarity=0.680 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877664
No 376
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.29 E-value=0.00015 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+++.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 377
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.29 E-value=0.00015 Score=56.25 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=23.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+..++|.||+|+|||++++.+...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998876
No 378
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.28 E-value=0.00014 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.819 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 379
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.28 E-value=9.6e-05 Score=57.63 Aligned_cols=21 Identities=43% Similarity=0.819 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q psy2657 11 VMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 11 v~l~GpsGsGKTTl~~~i~~~ 31 (163)
++|+|++|+|||||++.+++.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 799999999999999998775
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.00015 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++++|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998863
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.28 E-value=0.00014 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|++||||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999886654
No 382
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.28 E-value=0.00013 Score=56.44 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.+++|+||+|||||||.+.+...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999998877653
No 383
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.27 E-value=0.00017 Score=55.78 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=23.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
++.+++|+||+|||||||...+...+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999988764
No 384
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.27 E-value=0.00016 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 385
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.26 E-value=0.00013 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHh
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
..+++|+|++||||||+++.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998863
No 386
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.00015 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.8
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+..+.|.||+|+||||+++.+...+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999888765
No 387
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.26 E-value=0.00011 Score=62.48 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=69.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCCCCC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEV 89 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 89 (163)
.++|+||+|+|||++++.+...+.....-+--.+++......... .+.+... + ......+.++|+++-...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~---~~~l~~~---~---~~~~~~vl~lDEi~~~~~ 593 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS---GGQLTEK---V---RRKPYSVVLLDAIEKAHP 593 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC------CHHH---H---HHCSSSEEEEECGGGSCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc---cchhhHH---H---HhCCCeEEEEeCccccCH
Confidence 599999999999999999877642111112222332221100000 0000000 0 001123778888864333
Q ss_pred cCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecCCCC---------cccCCchhhhce-eEEEEcCCcccc
Q psy2657 90 DAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSG---------SFTIEPRLQRHF-YVFALRLGLLRI 159 (163)
Q Consensus 90 ~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP~~g---------~~~l~~~~~~~~-~~~~l~~~~~~~ 159 (163)
+ +.+.|.+.++.|.+.+-.- .-....++-+|++.+.... ...+.|.+...| .++.++.++.+.
T Consensus 594 ~------~~~~Ll~~le~g~~~~~~g-~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~ 666 (758)
T 3pxi_A 594 D------VFNILLQVLEDGRLTDSKG-RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKH 666 (758)
T ss_dssp H------HHHHHHHHHHHSBCC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHH
T ss_pred H------HHHHHHHHhccCeEEcCCC-CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHH
Confidence 3 6677888888877443210 0133456777777764332 112778888888 566666665543
No 388
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.26 E-value=0.0001 Score=63.05 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=24.6
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+....-++|.||+|||||.+++++.+...
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 34455699999999999999999999864
No 389
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.26 E-value=0.00016 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.|.-++|.|+||+||||++-.++..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 46788999999999999999877763
No 390
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.26 E-value=0.00016 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 391
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.25 E-value=0.00016 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 392
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.25 E-value=0.00019 Score=52.19 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.0
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+..++|+|+.||||||+++.+...+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999887654
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.24 E-value=0.00016 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++|+|++||||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999887643
No 394
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.24 E-value=0.00017 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999876
No 395
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.24 E-value=0.00018 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998875
No 396
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.24 E-value=0.00016 Score=50.22 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 397
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.24 E-value=0.00015 Score=55.59 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.5
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.+|+++.|.||+|||||||+..++..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 678999999999999999999988764
No 398
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.24 E-value=0.0002 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+.+++|+||+|||||||...+...++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999887653
No 399
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.24 E-value=7.8e-05 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=21.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHh
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
+.-.++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999998874
No 400
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.24 E-value=0.00016 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++.|+|++||||||+.+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988763
No 401
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.23 E-value=9.2e-05 Score=63.64 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--Eeecce--EEEEEecCCCCcccCCchhhhce
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNI--MFVSAMNPTSGSFTIEPRLQRHF 147 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~--~~i~~deP~~g~~~l~~~~~~~~ 147 (163)
++++.+| |+|+ +||+++ ++..+| .++++||||++ ||++-...+
T Consensus 374 ~r~~~tL-----SGGe---~QRV~LA~aL~~~p~~~llILDEPT~~---Ld~~~~~~L 420 (842)
T 2vf7_A 374 DRSTPTL-----SPGE---LQRLRLATQLYSNLFGVVYVLDEPSAG---LHPADTEAL 420 (842)
T ss_dssp TCBGGGS-----CHHH---HHHHHHHHHTTTCCCSCEEEEECTTTT---CCGGGHHHH
T ss_pred cCCcCcC-----CHHH---HHHHHHHHHHhhCCCCeEEEeeCcccc---CCHHHHHHH
Confidence 4445555 8899 999998 778888 59999999999 988765544
No 402
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.23 E-value=0.00018 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999875
No 403
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.23 E-value=0.00017 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 404
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.23 E-value=0.00016 Score=52.88 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=21.0
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+|..++|.|++||||||+++.+...+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999887654
No 405
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.23 E-value=0.00019 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 406
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.23 E-value=0.00016 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|||||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999886
No 407
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.21 E-value=0.00013 Score=54.43 Aligned_cols=22 Identities=41% Similarity=0.783 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+++.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999988764
No 408
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.21 E-value=0.00017 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+++.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 409
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.21 E-value=0.0002 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999988764
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.21 E-value=0.00018 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.+++|+||+||||||+.+.+...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999887653
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.21 E-value=0.00019 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999998853
No 412
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.21 E-value=0.00016 Score=53.71 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.9
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.....++|.||+|+|||++++.+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999987764
No 413
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.21 E-value=0.00019 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00019 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999998875
No 415
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.20 E-value=0.00019 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
-.++|+|++|+|||||++.+++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999888763
No 416
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.20 E-value=0.00017 Score=50.00 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.-.++++|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999875
No 417
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.19 E-value=0.00021 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 418
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.18 E-value=0.0002 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999886
No 419
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=0.0002 Score=50.91 Aligned_cols=22 Identities=41% Similarity=0.783 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988765
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.18 E-value=0.00022 Score=49.10 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
=.++++|++|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999988875
No 421
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.18 E-value=0.00022 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 422
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.18 E-value=0.00021 Score=50.54 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 423
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.17 E-value=0.00021 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+++.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
No 424
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.17 E-value=0.00034 Score=50.77 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCCC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLPP 34 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~~ 34 (163)
.+|..+++.|++||||||+++.+...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999998887654
No 425
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00023 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 426
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.17 E-value=0.00023 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++|+|+.|+|||||++.+++.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 427
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00023 Score=49.93 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.17 E-value=0.00025 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+.+++|+|++||||||+.+.+...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999887765
No 429
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.16 E-value=0.00023 Score=50.08 Aligned_cols=21 Identities=48% Similarity=0.669 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHh
Q psy2657 10 PVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~ 30 (163)
.++|+|++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999998886
No 430
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00026 Score=56.57 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.3
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+....-++|.||+|||||+|++++.+...
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 44455699999999999999999998753
No 431
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.16 E-value=0.00022 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|||||||++.+.|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999885
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.16 E-value=0.00024 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 433
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.16 E-value=0.00024 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 434
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.16 E-value=0.00014 Score=51.40 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHh
Q psy2657 10 PVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~ 30 (163)
.++|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999998865
No 435
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00027 Score=56.37 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=23.9
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+....-++|.||+|||||+|++++.+...
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444599999999999999999988753
No 436
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.15 E-value=0.00023 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.-.++++|++|+|||||++.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999854
No 437
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.15 E-value=0.00026 Score=49.52 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999988775
No 438
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.15 E-value=0.00021 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.788 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
No 439
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.14 E-value=0.00027 Score=54.88 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.2
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.....++|.||+|+|||++++.+.....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999988763
No 440
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.14 E-value=0.00022 Score=54.26 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.|+|+|++|+|||||++.++|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 441
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.13 E-value=0.00024 Score=53.15 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|||||||++.+.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 442
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.13 E-value=0.00022 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++|+|++|+|||||++.+++.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.12 E-value=0.00026 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.++++|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999888864
No 444
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00026 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.691 Sum_probs=22.4
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHH
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKML 29 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~ 29 (163)
+.+|+.+.|.|++|+|||+|+-.++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 6789999999999999999987654
No 445
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.12 E-value=0.00026 Score=50.97 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 10 PVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
++.|+||+||||+|.++.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999887754
No 446
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.12 E-value=0.00012 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++|+|++|+|||||++.+++.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35899999999999999999886
No 447
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.12 E-value=0.0002 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.696 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998764
No 448
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.12 E-value=0.00021 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 449
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.12 E-value=0.0002 Score=49.28 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988875
No 450
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.12 E-value=0.00041 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=23.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
....++|+||+|+|||++++.+...+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988763
No 451
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.12 E-value=0.0003 Score=53.71 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=24.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.+|+.+.|.|++|+|||||+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999999977643
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.11 E-value=0.00028 Score=51.02 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=23.7
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
-+|..++|.|++||||||+++.+...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999998876553
No 453
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.00027 Score=50.19 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 454
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.11 E-value=0.00021 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++|+|++|+|||||++.+++.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998775
No 455
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.11 E-value=0.00026 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999886
No 456
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.10 E-value=0.00026 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.|.-++|+|+||+||||++..+++.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5888999999999999999988874
No 457
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.10 E-value=0.00014 Score=63.26 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=24.1
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~ 26 (163)
|++.|..++.++|+|.||||||||+-
T Consensus 39 i~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 39 VDLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp EEEEEESSSEEEEEESTTSSHHHHHT
T ss_pred eeeeccCCCEEEEECCCCCcHHHHHH
Confidence 57889999999999999999999986
No 458
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.10 E-value=0.00026 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 459
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.10 E-value=0.00017 Score=50.37 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988765
No 460
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.10 E-value=0.00027 Score=50.37 Aligned_cols=22 Identities=18% Similarity=0.573 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 461
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.10 E-value=0.00015 Score=63.02 Aligned_cols=26 Identities=46% Similarity=0.629 Sum_probs=24.0
Q ss_pred CcccccCCccEEEEcCCCCcHHHHHH
Q psy2657 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26 (163)
Q Consensus 1 i~l~i~~ge~v~l~GpsGsGKTTl~~ 26 (163)
|++.|..++.++|+|.||||||||+-
T Consensus 37 i~v~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 37 IDVEIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred eeeeccCCcEEEEECCCCCCHHHHHH
Confidence 57889999999999999999999985
No 462
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.00024 Score=55.16 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..-.++++|++|+|||||++.+++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999998764
No 463
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.09 E-value=0.0003 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.710 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++++|++|+|||||++.+.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998875
No 464
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.08 E-value=2.4e-05 Score=67.79 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhcCCceecCCcce--EeecceE--EEEEecCCCCcccCCchhhhceeEE
Q psy2657 94 TVQPHTVIRQYMDYQHWYDRQKLSL--KDIHNIM--FVSAMNPTSGSFTIEPRLQRHFYVF 150 (163)
Q Consensus 94 ~~~~~ellr~~~s~g~~~~~~~~~~--~~~~~~~--~i~~deP~~g~~~l~~~~~~~~~~~ 150 (163)
++++.+| |+|| +||+++ +++.+|+ ++++||||+| ||++....+..+
T Consensus 459 ~r~~~~L-----SGGe---~QRv~LAraL~~~p~~~lllLDEPT~g---LD~~~~~~l~~~ 508 (916)
T 3pih_A 459 SRSATTL-----SGGE---SQRIRLATQIGSGLTGVIYVLDEPTIG---LHPRDTERLIKT 508 (916)
T ss_dssp TSBGGGC-----CHHH---HHHHHHHHHHHTTCCSCEEEEECTTTT---CCGGGHHHHHHH
T ss_pred cCCcccC-----CHHH---HHHHHHHHHHhhCCCCcEEEEECCccC---CCHHHHHHHHHH
Confidence 5677888 9999 999999 7777776 9999999999 999877665433
No 465
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.08 E-value=0.00029 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++++|++|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988764
No 466
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.08 E-value=0.00068 Score=58.40 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=57.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhcccccc---C-CceecC-CCCceEEEEEec
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK---A-GRNFGP-PGNKTMIYFVDD 83 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-~~~~~~~~~l~~ 83 (163)
..++|+||+|+|||++++.+...+......+-..+++...........+..+.... . +.+... ......+.++|+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDE 668 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE 668 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEec
Confidence 47899999999999999999876532222222223332221110000000000000 0 000000 001135788888
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHhcCCceecCCcceEeecceEEEEEecC
Q psy2657 84 MNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNP 132 (163)
Q Consensus 84 ~~l~~~~~~~~~~~~ellr~~~s~g~~~~~~~~~~~~~~~~~~i~~deP 132 (163)
++-... .+.+.|.+.++.|.+.+.+... .-+.++-+|++.+.
T Consensus 669 i~~l~~------~~~~~Ll~~l~~~~~~~~~g~~-vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 669 IEKAHP------DVFNILLQILDDGRLTDSHGRT-VDFRNTVIILTSNL 710 (854)
T ss_dssp GGGSCH------HHHHHHHHHHTTTEECCSSSCC-EECTTEEEEEECCT
T ss_pred ccccCH------HHHHHHHHHhccCceECCCCCE-eccCCeEEEEecCc
Confidence 854332 3677888888887754332111 33355657776664
No 467
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.08 E-value=0.00034 Score=53.34 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+..+.|.||+|+|||+|++++...+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999887653
No 468
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.07 E-value=0.00028 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|+.|+|||||++.++|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 4999999999999999999986
No 469
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.07 E-value=0.00068 Score=54.27 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcCCCCCeeee
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALT 40 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~ 40 (163)
...++|+||+||||||+++.+.+.+...-+.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 356999999999999999999988754333333
No 470
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.06 E-value=0.00035 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+|..++|.|++||||||+++.+...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887654
No 471
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.06 E-value=0.00029 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999988764
No 472
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.06 E-value=0.00027 Score=53.97 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.6
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHh
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLS 30 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~ 30 (163)
+.+|+++.|.||+|+|||||+..++.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999997764
No 473
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.05 E-value=0.00035 Score=54.07 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=22.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+..+.|.||+|+||||+++.+...+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999888754
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.05 E-value=0.00035 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..+++|+||+|||||||...+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999887765
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00035 Score=48.84 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 476
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.04 E-value=0.00032 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++|+|++|+|||||++.++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988775
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.04 E-value=0.00034 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 478
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.04 E-value=0.00019 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=9.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00034 Score=51.10 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
+|..++|.|+.||||||+++.+...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999887663
No 480
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.02 E-value=0.00035 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+++.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 481
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.02 E-value=0.00035 Score=50.41 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCCCCCeeeeeeeecCCCCHHHHHHHHhccccccCCceecCCCCceEEEEEecCCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNM 86 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 86 (163)
+...+++.||+|+||||++.+++..+. |++. .+.... ....+.+....+ +.++|+++.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~-g~i~----~fans~----------------s~f~l~~l~~~k-IiiLDEad~ 114 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQ-GAVI----SFVNST----------------SHFWLEPLTDTK-VAMLDDATT 114 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT-CEEC----CCCCSS----------------SCGGGGGGTTCS-SEEEEEECH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhC-CCee----eEEecc----------------chhhhcccCCCC-EEEEECCCc
Confidence 445699999999999999999888763 3321 111100 000011111112 456777763
Q ss_pred CCCcCCCCCCHHHHHHHHHhcCCc-eecCCcceEeecceEEEEEecCCCCcccCCchhhhceeEEEEc
Q psy2657 87 PEVDAYGTVQPHTVIRQYMDYQHW-YDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153 (163)
Q Consensus 87 ~~~~~~~~~~~~ellr~~~s~g~~-~~~~~~~~~~~~~~~~i~~deP~~g~~~l~~~~~~~~~~~~l~ 153 (163)
+. .....+.+|..+++... .|++..+-..+..+.+|++.+-.-....--+++...+..+..+
T Consensus 115 ~~-----~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~ 177 (212)
T 1tue_A 115 TC-----WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFP 177 (212)
T ss_dssp HH-----HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECC
T ss_pred hh-----HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcC
Confidence 21 12245677888887642 2344444466677788888774332111113344444554444
No 482
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.01 E-value=0.00043 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
+|..+++.|++||||||.++.+...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999887655
No 483
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.01 E-value=0.00027 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.-.++++|++|+|||||++.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3446999999999999999988654
No 484
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.01 E-value=0.00034 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.691 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+++.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 485
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.01 E-value=0.0039 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.+++.||.|+||||+++.+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHH
Confidence 4999999999999999988765
No 486
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.99 E-value=0.00034 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|.+|+|||||++.++|.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 5999999999999999999986
No 487
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.98 E-value=0.00043 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 8 RKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 8 ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
|-.++|+|.+|+|||||++.+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999884
No 488
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.98 E-value=0.00042 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999988765
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.97 E-value=0.00024 Score=52.66 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=23.9
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
.++..++|.|+.||||||+++.+...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678899999999999999998877763
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00046 Score=49.54 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998875
No 491
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.96 E-value=0.00049 Score=50.16 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.5
Q ss_pred cCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 6 ~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
..|..+++.|++||||||+++.+...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999886654
No 492
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.96 E-value=0.00046 Score=55.60 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=24.8
Q ss_pred cccCCccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 4 FIPKRKPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 4 ~i~~ge~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+-+|+..+|+|++|+|||||++.+....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34579999999999999999999887653
No 493
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.95 E-value=0.00049 Score=54.93 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhcC
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSSL 32 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~~ 32 (163)
.+++++|++|+||||++..+.+.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999888764
No 494
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.00046 Score=49.69 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998863
No 495
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.94 E-value=0.00049 Score=48.77 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 9 KPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 9 e~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
-.++++|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999988764
No 496
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.93 E-value=0.00053 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHH
Q psy2657 7 KRKPVMLIGNAGSGKSILINKM 28 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i 28 (163)
+|.+++++||.||||||++--+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHH
Confidence 4789999999999999997433
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.92 E-value=0.00053 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999988775
No 498
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.91 E-value=0.0005 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=24.1
Q ss_pred ccCCccEEEEcCCCCcHHHHHHHHHhc
Q psy2657 5 IPKRKPVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 5 i~~ge~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
+.+|+++.|.||+|+|||||+..++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999977654
No 499
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.89 E-value=0.00054 Score=48.59 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHhc
Q psy2657 10 PVMLIGNAGSGKSILINKMLSS 31 (163)
Q Consensus 10 ~v~l~GpsGsGKTTl~~~i~~~ 31 (163)
.++++|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988764
No 500
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.87 E-value=0.00061 Score=54.59 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHhcCC
Q psy2657 7 KRKPVMLIGNAGSGKSILINKMLSSLP 33 (163)
Q Consensus 7 ~ge~v~l~GpsGsGKTTl~~~i~~~~~ 33 (163)
++..++|.||+|+|||++++++...+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 446799999999999999999877653
Done!