RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2657
(163 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 188 bits (479), Expect = 4e-56
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP 60
+ ++ ++L G GSGK++++N L + Y + + F+ T++E + L +
Sbjct: 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNALRN--SSLYDVVGINFSKDTTTEHILSALHRH 1317
Query: 61 LE---KKAGRNFGPPG-NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKL 116
G P K ++ F D++N+P++D YG+ +RQ M+ Q ++ +
Sbjct: 1318 TNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPEN 1377
Query: 117 SLKDIHNIMFVSAMNP--TSGSFTIEPRLQRHFYVFAL 152
I I V A NP G + R RH + L
Sbjct: 1378 KWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415
Score = 29.8 bits (67), Expect = 0.47
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 11 VMLIGNAGSGKSILINKMLSSL 32
++L+G AG GK+ ++ ++
Sbjct: 926 LILVGKAGCGKTATWKTVIDAM 947
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 188 bits (478), Expect = 5e-56
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP 60
++ ++ + +P++L G GSGK++ + L + P + + S+ F+ T+ E+L K +
Sbjct: 1297 LHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD--FEVVSLNFSSATTPELLLKTFDHH 1354
Query: 61 LEKKAGRN----FGPPG-NKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQK 115
E K + P K ++ F D++N+P D YGT + T IRQ ++ ++
Sbjct: 1355 CEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSD 1414
Query: 116 LSLKDIHNIMFVSAMNP--TSGSFTIEPRLQRHFYVFAL 152
+ + I FV A NP +G + R RH + +
Sbjct: 1415 HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLV 1453
Score = 26.8 bits (59), Expect = 4.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSL 32
VM++G +G GK+ L ++
Sbjct: 906 NHGVMMVGPSGGGKTTSWEVYLEAI 930
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 38/135 (28%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFN-FYTSS----------EMLQKV--- 56
V++ G GSGK+ + + S + + F F+ + EMLQK+
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQ----CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 57 LEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKL 116
++ ++ + + + + A +R+ + Y+ L
Sbjct: 209 IDPNWTSRSDHSSNIK-----------LRIHSIQAE--------LRRLL-KSKPYENCLL 248
Query: 117 SLKDIHNIMFVSAMN 131
L ++ N +A N
Sbjct: 249 VLLNVQNAKAWNAFN 263
Score = 28.7 bits (63), Expect = 1.2
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 24/118 (20%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP-LEKKAGRNF 69
VM++ N S L+ K T ++ S+ E+ K+ + L + ++
Sbjct: 404 VMVVVNKLHKYS-LVEK---QPKESTISIPSIYL------ELKVKLENEYALHRSIVDHY 453
Query: 70 GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
P + DD+ P +D Y ++ + H + + + ++F+
Sbjct: 454 NIPKT----FDSDDLIPPYLDQY--------FYSHIGH-HLKNIEHPERMTLFRMVFL 498
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.005
Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 29/144 (20%)
Query: 16 NAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQ----KVLEKPLEKKAGRNFGP 71
+A S + + ++ SL + L VP + + LQ K+L +P E A +
Sbjct: 2 DAYSTRPLTLSH--GSL---EHVL-LVPTASFFIASQLQEQFNKILPEPTEGFAADD--E 53
Query: 72 PGNKT-----MIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMF 126
P + +V V+ Q V+ + ++ L DIH
Sbjct: 54 PTTPAELVGKFLGYVSS----LVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIH--AL 104
Query: 127 VSAMNPTSGSFTIEPRLQ--RHFY 148
+ + + + T+ + +++
Sbjct: 105 AAKLLQENDT-TLVKTKELIKNYI 127
Score = 31.2 bits (70), Expect = 0.16
Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 44/172 (25%)
Query: 19 SGKSI--LINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP----LEKKAGRN---- 68
G I L K+L + N+ T+ M ++ +K L + G
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 69 ---FGPPGNKTMIYFVDDMNMPEVDAYGTVQPH-------------TVIRQYMDYQHWYD 112
FG GN T YF +++ D Y T +IR +D + +
Sbjct: 157 VAIFGGQGN-TDDYF-EEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 113 RQKLSLKDIHNIMFVSAMNPTSG-------SFTIEPRLQ-RHFYVFALRLGL 156
+ L +I + + P S + +Q H+ V A LG
Sbjct: 211 Q---GL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 35.0 bits (81), Expect = 0.005
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
N I + + + + G+ G+GK+ L+ ++ L P
Sbjct: 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 34.1 bits (79), Expect = 0.010
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
N I + + + + G+ G+GK+ L+ ++ L P
Sbjct: 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 34.6 bits (79), Expect = 0.012
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 6/151 (3%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP---ETYALTSVPFNFYT--SSEMLQK 55
+N + +IG G+GKS LIN + L P E Y + + + ++
Sbjct: 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIES 751
Query: 56 VLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQK 115
L+K + F G + + E DA + + + R+K
Sbjct: 752 HLDKTPSEYIQWRF-QTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 810
Query: 116 LSLKDIHNIMFVSAMNPTSGSFTIEPRLQRH 146
+ F+ N S P +
Sbjct: 811 FKNTYEYECSFLLGENIGMKSERWVPMMSVD 841
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 33.8 bits (78), Expect = 0.016
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 2 NLFIPKR-KPVMLIGNAGSGKSILINKMLSSLPPETY---ALTSVPFNFYTSSEMLQKVL 57
L + K V ++G G+GKS + + L P + +E LQ
Sbjct: 40 RLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE-LQNYF 98
Query: 58 EKPLEKKAGRNFGPP 72
EK + P
Sbjct: 99 EKLKNGEIRPVVKPQ 113
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 33.7 bits (78), Expect = 0.016
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
IP+ V ++G G GKS L++ +L+ +
Sbjct: 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 32.9 bits (76), Expect = 0.026
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVP 43
NL+ RK ++LIG +G G+S + N +LS PE + VP
Sbjct: 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ-NPEKFVY-PVP 52
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 32.1 bits (74), Expect = 0.048
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVP 43
RK ++L+G G G+ + N +++ P+ +A +P
Sbjct: 4 MRKTLVLLGAHGVGRRHIKNTLITK-HPDRFAY-PIP 38
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 31.9 bits (73), Expect = 0.082
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 2 NLFIPKR-KPVMLIGNAGSGKSILINKMLSSLPPETYALT---SVPFNFYTSSEMLQKVL 57
L I K V ++G G+GK+ + + L P + +E LQ
Sbjct: 110 RLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-LQNYF 168
Query: 58 EKPLEKKAGRNFGPP 72
E+ + P
Sbjct: 169 ERLKNGEIRPVVKPQ 183
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.5 bits (71), Expect = 0.12
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44
+ V ++G GKS IN+++ + +T+ F
Sbjct: 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF 198
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.15
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 25 INKMLSSLPPETYALTSVP 43
+ K+ +SL YA S P
Sbjct: 22 LKKLQASLKL--YADDSAP 38
Score = 25.7 bits (55), Expect = 5.6
Identities = 4/17 (23%), Positives = 7/17 (41%), Gaps = 1/17 (5%)
Query: 1 MNLFIPKRKPVMLIGNA 17
+ L+ P + I A
Sbjct: 29 LKLYADDSAPALAI-KA 44
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 31.1 bits (71), Expect = 0.16
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 10 PVMLI-GNAGSGKSILINKMLSSL 32
P +L+ G GSG S+ +N M+ S+
Sbjct: 168 PHLLVAGTTGSGASVGVNAMILSM 191
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 31.2 bits (71), Expect = 0.16
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 10 PVMLI-GNAGSGKSILINKMLSSL 32
P +L+ G GSGKS+ +N ML S+
Sbjct: 215 PHLLVAGTTGSGKSVGVNAMLLSI 238
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.0 bits (70), Expect = 0.17
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLS 30
+P + ++ G +G+GK++ + L
Sbjct: 36 LPIGRSTLVSGTSGTGKTLFSIQFLY 61
Score = 26.8 bits (59), Expect = 3.6
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32
K ++ G G+GK++L+++ + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVENA 305
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 30.7 bits (69), Expect = 0.19
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 6 PKRKPVMLIGNAGSGKSILINKMLSSL 32
K V ++G GKS IN+M+
Sbjct: 158 RGGKDVYVVGCTNVGKSTFINRMIKEF 184
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 30.8 bits (70), Expect = 0.21
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
+NL + + V L+GN+G GKS +
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQ 434
Score = 26.5 bits (59), Expect = 5.8
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
++L + K + + L+G++G GKS ++
Sbjct: 1052 LSLEVKKGQTLALVGSSGCGKSTVVQ 1077
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 30.2 bits (68), Expect = 0.23
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLS 30
P+ V+L G G+GK+ + +
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 30.1 bits (67), Expect = 0.24
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 5/117 (4%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++L G + +GKS ++ + S LP A +M + G + G
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
P + + V A +I + S ++++V
Sbjct: 66 PEFRALEGAWAE-----GVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWV 117
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 30.1 bits (68), Expect = 0.26
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 29/164 (17%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPP-ETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNF 69
V++ G+ G+GKS + + + LP E V VL + +K
Sbjct: 48 VLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVV 107
Query: 70 GPPGNKTMIYFVDDMNMPEVDAYGTVQPH-------------------------TVIRQY 104
P + V +++ + G ++
Sbjct: 108 DLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDV 167
Query: 105 MDYQHWY-DRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHF 147
+R LS++ + V + NP G + P+L F
Sbjct: 168 AQSGENVVERDGLSIRHPARFVLVGSGNPEEG--DLRPQLLDRF 209
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.4 bits (68), Expect = 0.28
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 4 FIPKRKPVMLI-GNAGSGKSILINKMLSSL 32
I ++K + I G AG+G + L ++ +L
Sbjct: 40 AIKEKKHHVTINGPAGTGATTLTKFIIEAL 69
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.0 bits (67), Expect = 0.31
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 11 VMLIGNAGSGKSILINKML 29
++L+G G+GKS N +L
Sbjct: 32 IVLVGKTGAGKSATGNSIL 50
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 30.0 bits (66), Expect = 0.37
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 11 VMLIGNAGSGKSILINKMLSS--LPPETYALTSVP 43
++++G+ GKS +N ++ LP + T+V
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVL 106
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 29.7 bits (67), Expect = 0.41
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 5 IPKRKPVMLIGNAGSGKSIL 24
IP+R V+L G G+GK+I
Sbjct: 20 IPERNVVLLSGGPGTGKTIF 39
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.2 bits (65), Expect = 0.54
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
P ++L+G +GSGKS + + + S+
Sbjct: 1 PLGSKLLLMGRSGSGKSSMRSIIFSNYSAF 30
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 29.1 bits (65), Expect = 0.55
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 11 VMLIGNAGSGKSILINKML-------SSLPPET 36
++++G G GKS +N ++ S E
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG 74
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 29.2 bits (66), Expect = 0.56
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 5 IPKRKPVMLIGNAGSGKSIL 24
IP+ + L G G+GK+I
Sbjct: 20 IPQGFFIALTGEPGTGKTIF 39
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 29.0 bits (66), Expect = 0.57
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
+NL I + + + ++G +GSGKS L
Sbjct: 28 INLSIKQGEVIGIVGRSGSGKSTLTK 53
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 29.3 bits (65), Expect = 0.57
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 11 VMLIGNAGSGKSILINKML 29
++L+G G+GKS N +L
Sbjct: 25 IILVGKTGTGKSAAGNSIL 43
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 28.6 bits (64), Expect = 0.61
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 11 VMLIGNAGSGKSILINKMLSSLP 33
++ IG GSGKS + ++ P
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNP 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 28.7 bits (65), Expect = 0.76
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPET 36
N + K + ++G G GKS L++ +L P
Sbjct: 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.8 bits (65), Expect = 0.78
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEM----LQKVLEKPLEKKAG 66
+ L+G G GKS + + P P LQ K LE
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 67 RNFGPP 72
P
Sbjct: 166 AIIKPQ 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 28.3 bits (63), Expect = 0.96
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 11 VMLIGNAGSGKSILINKML-------SSLPPET 36
V+++G G GKS +N ++ S E
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 28.4 bits (63), Expect = 1.00
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
F + ++L+G SGKS + + + P
Sbjct: 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN 47
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.1 bits (62), Expect = 1.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 11 VMLIGNAGSGKSILINKML 29
++L+G G+GKS N +L
Sbjct: 24 LILVGRTGAGKSATGNSIL 42
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.1 bits (62), Expect = 1.2
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
M + I G G GK+ L+ K++ L
Sbjct: 1 MKIII--------TGEPGVGKTTLVKKIVERLGKR 27
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann
fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella
typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Length = 180
Score = 27.8 bits (62), Expect = 1.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKV 56
+++ G A SGKS ++ P Y TS + EM ++
Sbjct: 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILD----DEMAARI 43
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 28.2 bits (62), Expect = 1.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 11 VMLIGNAGSGKSILINKMLSS 31
+M++G +G GKS LIN + +
Sbjct: 11 LMVVGESGLGKSTLINSLFLT 31
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.1 bits (62), Expect = 1.3
Identities = 6/61 (9%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSE---MLQKVLEKPLEK 63
+ ++ G+ +I I + + + A S+ + + ++ L+ +
Sbjct: 118 NEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLFKDP 177
Query: 64 K 64
+
Sbjct: 178 Q 178
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.1 bits (62), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 11 VMLIGNAGSGKSILINKMLSSLP 33
++ IG GSGKS + ++ P
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNP 27
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.8 bits (61), Expect = 1.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 11 VMLIGNAGSGKSILINKMLSS 31
+M++G +G GKS LIN + +
Sbjct: 21 LMVVGESGLGKSTLINSLFLT 41
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 27.9 bits (63), Expect = 1.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILI 25
+N+ I + + ++G G GKS L
Sbjct: 27 INMNIKRGEVTAILGGNGVGKSTLF 51
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 27.8 bits (63), Expect = 1.6
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
++ + G +G GKS + +
Sbjct: 21 ISFEAQPNSIIAFAGPSGGGKSTIFS 46
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.5 bits (62), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
+N FIP L+G+ GSGKS +
Sbjct: 39 INFFIPSGTTCALVGHTGSGKSTIAK 64
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 27.3 bits (61), Expect = 1.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 11 VMLIGNAGSGKSILIN 26
+M++GN GSGK+ L+
Sbjct: 5 LMIVGNTGSGKTTLLQ 20
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 27.6 bits (61), Expect = 1.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 11 VMLIGNAGSGKSILINKMLSSL 32
++ G+GKS +L
Sbjct: 38 WTILAKPGAGKSFTAKMLLLRE 59
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILI 25
+L I + + +++ GN GSGKS L+
Sbjct: 27 SLVINEGECLLVAGNTGSGKSTLL 50
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 27.5 bits (62), Expect = 2.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILIN 26
+ K L+G GSGKS +
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTVAA 63
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.6 bits (61), Expect = 2.2
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 11 VMLIGNAGSGKSILINKMLSSL 32
+++ G G+GKS+L+ ++ +
Sbjct: 56 LLVNGATGTGKSVLLRELAYTG 77
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Length = 199
Score = 27.2 bits (60), Expect = 2.2
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 124 IMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153
+ V AMN + ++ + A+
Sbjct: 75 MPAVYAMNLIGS--GLSDEAHFNYLMAAVP 102
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.0 bits (59), Expect = 2.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 11 VMLIGNAGSGKSILINKMLSSL 32
V+ +G AGSGK+ L + L
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYL 38
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 27.0 bits (60), Expect = 2.8
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYT 48
++ V+ +G SGK++L ++L+ +T TS+ +
Sbjct: 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--TSITDSSAI 45
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 27.2 bits (60), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32
IPK+ + IG +GKS+L N ++ L
Sbjct: 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
++L +P+ ++ G +GSGKS L
Sbjct: 39 VDLDLPRDALIVFTGLSGSGKSSLAF 64
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 27.2 bits (61), Expect = 3.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
++ IP+ K V L+G +GSGKS + N
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIAN 387
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 2 NLFIPKR-KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPF-----NFYTSSEMLQK 55
L PK + ++G G GK+ ++ + + P S + E +
Sbjct: 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE-IYN 76
Query: 56 VLEKPLEKK 64
++ +
Sbjct: 77 YFKELYSNE 85
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor;
1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A
2a6q_E
Length = 84
Score = 25.7 bits (56), Expect = 3.4
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 106 DYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRLG 155
DY +W + K +K I+ ++ + P G EP ++ R+
Sbjct: 12 DYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRIT 61
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 27.0 bits (60), Expect = 3.6
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 52 MLQKVLEKPLEKKAGRNFGPPGNKTMIYFV----DDMNMPEVDAYG 93
L + E+ AG G G+ T I + DD+ P D G
Sbjct: 288 DLATLYER-----AGIVKGAKGSVTQIPILSMPGDDITHPIPDLSG 328
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 26.8 bits (60), Expect = 3.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
+NL IP K V L+G +GSGKS + +
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIAS 387
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic,
lipoprotein, outer membrane, carbohydrate esterase
family 8; 1.70A {Escherichia coli k-12}
Length = 422
Score = 26.9 bits (59), Expect = 3.7
Identities = 8/78 (10%), Positives = 17/78 (21%), Gaps = 1/78 (1%)
Query: 2 NLFIPKRKP-VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP 60
+++P + L G + I L V +
Sbjct: 120 TVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDS 179
Query: 61 LEKKAGRNFGPPGNKTMI 78
+ K + G +
Sbjct: 180 CQSKRSDSIGVLCSAVFW 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.7 bits (58), Expect = 4.1
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 9 KP-VMLIGNAGSGKSILINKML 29
KP V++ G +GK+ I +L
Sbjct: 65 KPMVLVAGQYSTGKTSFIQYLL 86
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 26.6 bits (59), Expect = 4.3
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 64 KAGRNFGPPGNKTMIYFV----DDMNMPEVDAYG 93
+AG G G+ T I + DD P D G
Sbjct: 297 RAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTG 330
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 26.4 bits (59), Expect = 4.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILI 25
N+ I + + V++IG +GSGKS +
Sbjct: 44 NVHIREGEVVVVIGPSGSGKSTFL 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.7 bits (60), Expect = 4.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
+++ IP+ K V+L G +GSGKS L
Sbjct: 37 IDVEIPRGKLVVLTGLSGSGKSSLAF 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 26.7 bits (59), Expect = 4.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 11 VMLIGNAGSGKSILINKML 29
V + G AG GKS+L + +
Sbjct: 150 VTIYGMAGCGKSVLAAEAV 168
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 26.4 bits (57), Expect = 5.0
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 6 PKRKPVMLI--GNAGSGKSILINKMLSSLPP 34
++P+ ++ G +G+GK+ +
Sbjct: 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG 58
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 26.6 bits (58), Expect = 5.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 11 VMLIGNAGSGKSILIN 26
V + G GSGKS IN
Sbjct: 72 VAVTGETGSGKSSFIN 87
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.3 bits (59), Expect = 5.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSL 32
K K + G +G GKS L+N + L
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAINPGL 193
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.2 bits (57), Expect = 5.9
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 11 VMLIGNAGSGKSILINKMLSS 31
++ +G G GKS L++ + ++
Sbjct: 45 ILCVGETGLGKSTLMDTLFNT 65
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 26.4 bits (57), Expect = 6.1
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 12 MLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
L G G+GKS + +++L P+ LT + F T + +K L K
Sbjct: 33 TLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVC 88
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 26.2 bits (58), Expect = 6.1
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK 64
+++ V+LIG G+GKS+L M LP ET V N + ++ +
Sbjct: 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN---MPRIKTVPACQ 113
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAY 92
R K + + +
Sbjct: 114 GRRIVEKYREKAKSQESVKSSNMRLKST 141
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 26.0 bits (58), Expect = 6.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSL 32
+ K + G +G GKS L+N + L
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 26.1 bits (58), Expect = 6.2
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALT 40
+ + G +G GKS L+N + L + LT
Sbjct: 216 RISIFAGQSGVGKSSLLNAL---LGLQNEILT 244
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein
complex, tuberculos structural genomics consortium,
protein binding; HET: MLZ FLC; 2.15A {Mycobacterium
tuberculosis}
Length = 96
Score = 25.0 bits (54), Expect = 6.3
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 106 DYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRL 154
D+ W + + + I ++ +P SG EP ++ R+
Sbjct: 24 DFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRI 72
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 26.2 bits (57), Expect = 6.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32
IPK++ + G SGK+ L +L
Sbjct: 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 26.2 bits (57), Expect = 6.7
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPP-ETYALTS 41
V+L+G GKS + + ++ P +T L S
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLES 33
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 25.8 bits (56), Expect = 7.5
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 25/156 (16%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYA-LTSVPFN---FYTSSEMLQKVLEKPLEKKAG 66
+ + G G+GK+ ++ +LS L + V N T +L +LE K
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF 107
Query: 67 RNF-----------GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQK 115
+ + V D E+DA+ ++ + ++ K
Sbjct: 108 TGLSIAELYRRLVKAVRDYGSQVVIVLD----EIDAFVKKYNDDILYKLSRINSEVNKSK 163
Query: 116 LSLKDIHNIM-FVSAMNPTSGSFTIEPRLQRHFYVF 150
+S I N + FV ++P S L +F
Sbjct: 164 ISFIGITNDVKFVDLLDPRVKS-----SLSEEEIIF 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.9 bits (56), Expect = 7.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 11 VMLIGNAGSGKSILINKMLSS 31
+M++G +G GKS LIN + +
Sbjct: 34 LMVVGESGLGKSTLINSLFLT 54
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 25.7 bits (56), Expect = 7.7
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33
KR + L G A +GK+ + + ++P
Sbjct: 101 FGKRNTIWLFGPATTGKTNIAEAIAHTVP 129
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 25.9 bits (57), Expect = 8.0
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLPPE 35
+ +++G SGK+ +N ++ +PP+
Sbjct: 260 KFSAIVVGETASGKTTTLNAIMMFIPPD 287
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 25.3 bits (56), Expect = 8.1
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 11 VMLIGNAGSGKSILIN 26
V+++G++G GK+ L+N
Sbjct: 11 VIILGDSGVGKTSLMN 26
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 25.6 bits (57), Expect = 8.2
Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 78 IYFVDDMNMPEVDAYGTVQPHTVIRQYMDY-QHWYDRQKLSLKDIH 122
++F +D + + G V+ +I+ Y++ + D + + +
Sbjct: 131 LFFKEDFDRAKWYEIGEVRREDIIKPYIEAIKSKVDVEAIKKRKPF 176
>1ks5_A Endoglucanase A; cellulase, jelly-roll, familly 12, glycosyl
hydrolase; 2.10A {Aspergillus niger} SCOP: b.29.1.11
PDB: 1ks4_A
Length = 223
Score = 25.7 bits (56), Expect = 8.4
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 86 MPEVDAYGTVQP-----HTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAMNPTSGSFTIE 140
M + YG +QP T ++ WY + + FVS S S I
Sbjct: 118 MIWLARYGNIQPIGKQIATATVGGKSWEVWYGSTTQAGAEQRTYSFVSESPINSYSGDIN 177
Query: 141 P 141
Sbjct: 178 A 178
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 25.6 bits (57), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
+L IP L+G +GSGKS +++
Sbjct: 363 FSLSIPSGSVTALVGPSGSGKSTVLS 388
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 25.5 bits (56), Expect = 9.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEML 53
RK ++++G+ GK+ L+ PE Y T F Y + +
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--VFENYIADIEV 68
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 25.2 bits (56), Expect = 9.2
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 7 KRKPVMLIGNAGSGKS 22
+++ + L+G G+GKS
Sbjct: 3 EKRNIFLVGPMGAGKS 18
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,514,554
Number of extensions: 141876
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 126
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)