RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2657
(163 letters)
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 40.8 bits (94), Expect = 2e-05
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRN 68
+ V+ +G SGK++L ++L+ +T TS+ + + L G
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--TSITDSSAIYKVNNNRGNSLTLIDLPGHE 58
Query: 69 FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
+ VD+ + + +++ + ++LK+ +++
Sbjct: 59 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFL---YQVLIDSMALKNSPSLLIA 114
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 34.2 bits (77), Expect = 0.004
Identities = 10/110 (9%), Positives = 26/110 (23%), Gaps = 4/110 (3%)
Query: 8 RKP-VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAG 66
+P +++ G SGK+ L+ + + + V
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLTTD---SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVK 58
Query: 67 RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKL 116
+ + VD+ + T +++
Sbjct: 59 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 108
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 33.8 bits (76), Expect = 0.007
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V++ G+ G+GKS + + + LP A+ P + + A
Sbjct: 31 VLVFGDRGTGKSTAVRALAALLPEIE-AVEGCPVSSPNVE---------MIPDWATVLST 80
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHW 110
K + + E G + I +
Sbjct: 81 NVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEP 120
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 32.3 bits (72), Expect = 0.014
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFY 47
RK ++++G+ GK+ L+ PE Y T
Sbjct: 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA 41
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 32.3 bits (72), Expect = 0.014
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37
LF + V+++G +GK+ ++ + + T
Sbjct: 8 WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS 44
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 32.2 bits (72), Expect = 0.016
Identities = 13/145 (8%), Positives = 37/145 (25%), Gaps = 9/145 (6%)
Query: 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLE 62
+F K ++++G +GK+ ++ K+ T T + V +
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG-- 64
Query: 63 KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIH 122
G + + + + + + +++ I
Sbjct: 65 -------GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 117
Query: 123 NIMFVSAMNPTSGSFTIEPRLQRHF 147
+ I+ +L
Sbjct: 118 IFANKQDLPDAMKPHEIQEKLGLTR 142
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.9 bits (71), Expect = 0.019
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 3/121 (2%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK 64
IP+ + + ++G+A SGKS LI++ L+ S + + ++ E
Sbjct: 3 IPELR-LGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 61
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNI 124
A +I+ + A + H + L
Sbjct: 62 APDAKFSGWADAVIFVFSLEDENSFQAV--SRLHGQLSSLRGEGRGGLALALVGTQDRIS 119
Query: 125 M 125
Sbjct: 120 A 120
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 31.8 bits (71), Expect = 0.020
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLP 33
RK ++L+G G G+ + N +++ P
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 31.9 bits (71), Expect = 0.021
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKV 56
K K ++++G++ GK+ L++ PE Y T + Q++
Sbjct: 2 KCK-IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRI 50
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 31.5 bits (70), Expect = 0.027
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V+L+G+ G GKS L+N+ +++ T +V + + G
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN----KDLEVDGHFVTMQIWDTAG 64
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
+++ + + + + Q + +K+ + FV
Sbjct: 65 QERFRSLRTPFYRGSDCCLLTFSVDDSQS--FQNLSNWKKEFIYYADVKEPESFPFV 119
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 31.7 bits (72), Expect = 0.030
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
NL IP K V L+G +GSGKS + + + +
Sbjct: 35 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 68
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 31.2 bits (69), Expect = 0.031
Identities = 13/121 (10%), Positives = 35/121 (28%), Gaps = 8/121 (6%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
+++IG++ GK+ L + + P+ T + ++ + ++ L AG+
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 64
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAM 130
Y + + + ++I +
Sbjct: 65 RKSMVQHYYRNVHAVV--------FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 116
Query: 131 N 131
N
Sbjct: 117 N 117
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 31.4 bits (70), Expect = 0.031
Identities = 22/165 (13%), Positives = 44/165 (26%), Gaps = 19/165 (11%)
Query: 2 NLFIPKRKP---VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLE 58
R P V+L G SGK+ L K+ ++ PF S + + E
Sbjct: 31 QTKNSDRTPLVSVLLEGPPHSGKTALAAKI--------AEESNFPFIKICSPDKMIGFSE 82
Query: 59 KPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL 118
+ + F + V D ++ + Y + P +
Sbjct: 83 TAKCQAMKKIFDDAYKSQLSCVVVD-DIERLLDYVPIGPRFSNLVLQALLVLLKKAP--- 138
Query: 119 KDIHNIMFVSAMNPTSG--SFTIEPRLQRHFYVFAL--RLGLLRI 159
++ + + + +V + LL
Sbjct: 139 PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEA 183
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 31.7 bits (72), Expect = 0.031
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
NL I K + V +G +G GKS LIN +
Sbjct: 38 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT 71
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 31.5 bits (71), Expect = 0.032
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALT-SVPFNFYTSSEMLQKVLEKP 60
+ I + + LIG G+GK+ + + + + P + +T E+ + + P
Sbjct: 22 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81
Query: 61 LEKKAGRNFGPPGNKTMIYFVDDMNMPEVD-----AYGTVQPHTVIRQYMDYQHWYDRQK 115
E A RN + + E++ A I+ + +K
Sbjct: 82 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRK 141
Query: 116 LSLK--DIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALRL 154
L + + N PTSG ++ R +
Sbjct: 142 LLIARALMVNPRLAILDEPTSG---LDVLNAREVRKILKQA 179
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 31.2 bits (69), Expect = 0.034
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V+++G++G GK+ L+N+ ++ Y T + +++ + AG+
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64
Query: 71 PPGNKTMIYFVDD-MNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
D + + +V + +D + S +D N FV
Sbjct: 65 QSLGVAFYRGADCCVLVFDVT-------APNTFKTLDSWRDEFLIQASPRDPENFPFV 115
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 31.4 bits (71), Expect = 0.040
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
NL I K + + + G+ GSGK+ L+ +L L
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEA 88
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.0 bits (69), Expect = 0.041
Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++IG+ G GKS L+ + + LT + K ++ + AG+
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
++ G + + + R+ + N++ +
Sbjct: 66 RSITRSYYRGAA----------GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM 112
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.8 bits (68), Expect = 0.045
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 6/127 (4%)
Query: 11 VMLIGNAGSGKSILINKML------SSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK 64
++ G + GKS LI ++ P T + + + + +M L K+
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNI 124
+ ++++ + G P + R + D + +I
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 125 MFVSAMN 131
+ A+N
Sbjct: 123 PTIVAVN 129
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 30.8 bits (68), Expect = 0.046
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPE 35
+ V L G G GK+ LI+K L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.8 bits (68), Expect = 0.048
Identities = 12/117 (10%), Positives = 27/117 (23%), Gaps = 11/117 (9%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
+ L+G SGK+ +N + S E T + + L +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKL-----------WD 53
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
G + V + ++ ++ +
Sbjct: 54 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 110
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.9 bits (68), Expect = 0.050
Identities = 15/104 (14%), Positives = 28/104 (26%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V+++G GKS L NK++ V + + K ++ +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQ 114
+ V + E D V D +
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLR 106
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 30.6 bits (68), Expect = 0.057
Identities = 18/148 (12%), Positives = 41/148 (27%), Gaps = 29/148 (19%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
VML+G++G GK+ L+ + +++V +F +
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD---------------- 52
Query: 71 PPGNKTMIYFVD-----------DMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLK 119
G K + D + A + T + + Q W +
Sbjct: 53 --GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 110
Query: 120 DIHNIMFVSAMNPTSGSFTIEPRLQRHF 147
+M + ++ ++
Sbjct: 111 HDVALMLLGNKVDSAHERVVKREDGEKL 138
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 30.7 bits (69), Expect = 0.059
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
NL I + + + ++G +GSGKS L + PE
Sbjct: 23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 56
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.3 bits (67), Expect = 0.059
Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 7/117 (5%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V + G G GKS L+ + + E+Y T S
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS-------ICTLQITDT 57
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
++ ++ + + + + + IM V
Sbjct: 58 TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 114
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 30.6 bits (69), Expect = 0.060
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
+ + G +G GKS + + + P
Sbjct: 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 30.6 bits (69), Expect = 0.060
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE 35
+ + L+G GSGKS + + + P
Sbjct: 34 TFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.4 bits (67), Expect = 0.061
Identities = 12/105 (11%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++++G +GK+ ++ K + +T + T + + +K+ R++
Sbjct: 5 LLMLGLDNAGKTTILKK-FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 63
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQK 115
+ D + VD+ + R+
Sbjct: 64 R-----NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 103
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.5 bits (68), Expect = 0.062
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYT 48
++LIG++G GKS L+ + + ++ T + +F
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITT-IGIDFKI 41
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.7 bits (68), Expect = 0.065
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 11 VMLIGNAGSGKSILINKMLSSL 32
V+ +G AGSGK+ L + L
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYL 24
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.8 bits (69), Expect = 0.067
Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 21/150 (14%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKP--LE 62
IPK++ + G SGK+ L +L +V + L +++ +
Sbjct: 151 IPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLVVF 207
Query: 63 KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMD--YQHWYDRQKLSLKD 120
+ G + ++ +D +R Y+D + +++ L+ +
Sbjct: 208 EDVKGTGGESRDLPSGQGIN-----NLDN---------LRDYLDGSVKVNLEKKHLNKRT 253
Query: 121 IHNIMFVSAMNPTSGSFTIEPRLQRHFYVF 150
+ MN S T++ R +
Sbjct: 254 QIFPPGIVTMNEYSVPKTLQARFVKQIDFR 283
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 30.4 bits (67), Expect = 0.073
Identities = 14/126 (11%), Positives = 37/126 (29%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK 64
I V ++G GKS L N +L+ + + + ++
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNI 124
R +T+ + + + ++ V Q + Q + + ++
Sbjct: 65 GLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV 124
Query: 125 MFVSAM 130
+ +
Sbjct: 125 VVFNKW 130
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.0 bits (66), Expect = 0.079
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPET 36
+++ G G GK+ L+ K++ L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRA 28
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.2 bits (67), Expect = 0.081
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYT 48
++LIGNAG GK+ L+ + L P T + +F
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGAT-IGVDFMI 44
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 30.0 bits (66), Expect = 0.085
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFY 47
+++G+ GK+ L+ ++ P Y T
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 42
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide
kinase/adenosylcobinamide phosphate guanylyltransferase
CobU {Salmonella typhimurium [TaxId: 90371]}
Length = 180
Score = 30.0 bits (67), Expect = 0.086
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKV 56
+++ G A SGKS ++ P Y TS + EM ++
Sbjct: 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILD----DEMAARI 43
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.0 bits (66), Expect = 0.096
Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 6/144 (4%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK 64
+P + ++ G +G+GK++ + L + + + E + + K
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFLY-----NGIIEFDEPGVFVTFEETPQDIIKNARSF 77
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNI 124
+ + + G +I + Y +++S+ D
Sbjct: 78 GWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSI-DSVTS 136
Query: 125 MFVSAMNPTSGSFTIEPRLQRHFY 148
+F + + + R
Sbjct: 137 VFQQYDASSVVRRELFRLVARLKQ 160
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.9 bits (66), Expect = 0.096
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAG 66
++ +G GK+ LI + + TY T + + + + L AG
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 58
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.7 bits (66), Expect = 0.100
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALT 40
++LIG++G GK+ ++ + T+ T
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFIST 38
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.6 bits (65), Expect = 0.12
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYA 38
++++G +GK+ ++ K+ T
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIP 30
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.8 bits (66), Expect = 0.12
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 11 VMLIGNAGSGKSILINKMLSS 31
++++G G GKS +N ++
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGE 55
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.5 bits (65), Expect = 0.14
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALT 40
++ +G++G GK+ + + + + T
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITT 37
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.3 bits (64), Expect = 0.14
Identities = 11/122 (9%), Positives = 35/122 (28%), Gaps = 3/122 (2%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V+++G++G GK+ L+++ ++ + Y T + + G
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA---G 61
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAM 130
+++ V Y + + ++ + + +
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121
Query: 131 NP 132
Sbjct: 122 ID 123
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.4 bits (65), Expect = 0.15
Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 8/135 (5%)
Query: 3 LFIPKRKP--VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQ-KVLEK 59
IP + P +ML+G G+GK+ K+ + + + V + Y + + Q + L +
Sbjct: 5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ 64
Query: 60 PLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLK 119
+ G + + + E V T R + + ++
Sbjct: 65 QIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVD--TAGRHGYGEEAALLEEMKNIY 122
Query: 120 DI---HNIMFVSAMN 131
+ + V +
Sbjct: 123 EAIKPDEVTLVIDAS 137
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 29.3 bits (64), Expect = 0.15
Identities = 14/118 (11%), Positives = 36/118 (30%)
Query: 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKA 65
K + + ++G GKS L + + ++Y T + Q+ + ++
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61
Query: 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHN 123
+ I + + V + + + VI + + + L
Sbjct: 62 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 119
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.3 bits (64), Expect = 0.17
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYT 48
++++G G GKS L + + S Y T
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKI 46
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 29.4 bits (66), Expect = 0.17
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPE--TYALTSVPFNFYTSSEMLQKVLEK 59
+L + +IG++GSGKS + + P + N + KV +K
Sbjct: 22 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81
Query: 60 PLEKKAGRNFG 70
+
Sbjct: 82 NQLRLLRTRLT 92
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.1 bits (64), Expect = 0.17
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 10/121 (8%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V+++G+ G GKS L + + E Y T ++V +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV---------QIDIL 57
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAM 130
+ + D + + V T + + + + Q L +K+ N+ F+
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFRE-QILRVKEDENVPFLLVG 116
Query: 131 N 131
N
Sbjct: 117 N 117
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.1 bits (64), Expect = 0.18
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLP 33
+P+++ G +G+GKS L+ K+ + P
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYP 26
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.8 bits (63), Expect = 0.20
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37
P+ +++G+ GK+ L+ ++ P Y
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY 34
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 0.20
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 6/106 (5%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPL------EKK 64
++++G G GKS L + + S Y T + L E
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG 67
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHW 110
A R + + + + Q + + D
Sbjct: 68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.1 bits (64), Expect = 0.21
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALT 40
++LIGN+G GKS L+ + Y T
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYIST 38
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.8 bits (63), Expect = 0.21
Identities = 10/104 (9%), Positives = 31/104 (29%), Gaps = 9/104 (8%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
+++G+ GK+ L+ + PE Y T + + ++
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQY---------LLGLY 62
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQ 114
+ + ++ P D + + + + + +
Sbjct: 63 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 106
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.8 bits (63), Expect = 0.22
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 1/102 (0%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V L+G+ G GKS ++ + + T + + ++ + + AG
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYD 112
M Y + D T+ + +
Sbjct: 67 RALAP-MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP 107
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.8 bits (63), Expect = 0.22
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 3/115 (2%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
+ + G AG GKS L+ + L+ Y T + ++ + +E
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEV---VSMEILDTAGQE 61
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIM 125
+ + + D V+ + ++L + N
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 116
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.9 bits (63), Expect = 0.23
Identities = 11/101 (10%), Positives = 21/101 (20%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V ++G GKS L+N +L + ++
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWY 111
+ M V + V +
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARA 108
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.8 bits (63), Expect = 0.25
Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 10/123 (8%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALT-SVPFNFYTSSEMLQKVLEKPLEKKAGRNF 69
++L+G SGKS ++ +M T + F +K
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFE 64
Query: 70 GPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSA 129
G + D + D M + K + +
Sbjct: 65 GVTAIIFCVALSDYDLVLAEDEE---------MNRMHESMKLFDSICNNKWFTDTSIILF 115
Query: 130 MNP 132
+N
Sbjct: 116 LNK 118
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.8 bits (63), Expect = 0.25
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLP 33
+PV+L G +G+GKS L+ K+
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHS 25
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.5 bits (62), Expect = 0.25
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 8/124 (6%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++++GN GKS +I + + + Y T ++ + + L AG+
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE-- 62
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAM 130
+ A V T + W ++ + DI + + +
Sbjct: 63 ------EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKI 116
Query: 131 NPTS 134
+
Sbjct: 117 DLLD 120
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 0.27
Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 4/124 (3%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAG---- 66
++L+G + GKS L+ + + E T + + ++ + AG
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 67 RNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMF 126
+ P + + ++ +++ + Q + + D+ N
Sbjct: 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA 128
Query: 127 VSAM 130
V
Sbjct: 129 VDFQ 132
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.4 bits (62), Expect = 0.27
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 2/105 (1%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRN 68
++L G+ GSGKS + + + S Y + L P + R
Sbjct: 5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWL--PQSHQQNRM 62
Query: 69 FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDR 113
+ + +D H+
Sbjct: 63 IMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVL 107
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 0.28
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 1/100 (1%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++L+G+ G+GK+ + + L+ + Y + ++ + + K
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHW 110
G + Y + D V V + D
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 104
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 28.3 bits (63), Expect = 0.29
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
+ I K V G G GK+ L+ + + L P
Sbjct: 21 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.4 bits (62), Expect = 0.30
Identities = 16/99 (16%), Positives = 34/99 (34%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++++G+ G GKS L + + + E Y T Q+ + + L+ F
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQH 109
+ M + + A T +R+ +
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.5 bits (62), Expect = 0.32
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 7 KRKPVMLIGNAGSGKSILINKMLSSLPPETY 37
K ++ +G +GK+ L++ + +
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.1 bits (61), Expect = 0.35
Identities = 9/114 (7%), Positives = 34/114 (29%), Gaps = 4/114 (3%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK 64
+ + ++++G G+GK+ ++ ++ T F + + + + +
Sbjct: 2 MTREMRILILGLDGAGKTTILYRLQV----GEVVTTIPTIGFNVETVTYKNLKFQVWDLG 57
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSL 118
+ P + + + + M + + L +
Sbjct: 58 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVV 111
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.3 bits (62), Expect = 0.35
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
++IGNAG+GKS L+++ + +
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDS 34
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.0 bits (61), Expect = 0.36
Identities = 6/36 (16%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 3 LFIPKRK-PVMLIGNAGSGKSILINKMLSSLPPETY 37
L+ ++ ++++G G+GK+ ++ ++ T
Sbjct: 11 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTK 46
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.9 bits (61), Expect = 0.39
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
+++IG +G GKS L+ +
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPEL 36
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.9 bits (61), Expect = 0.42
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 10/124 (8%)
Query: 11 VMLIGNAGSGKSILINKM--LSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRN 68
++L+G SGKS + +M + P T + F + V + E+K
Sbjct: 5 ILLLGAGESGKSTFLKQMRIIHGQDP-TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE 63
Query: 69 FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVS 128
+ + V + ++ + N+ +
Sbjct: 64 CFDSVTSILFLVSS-------SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116
Query: 129 AMNP 132
+N
Sbjct: 117 FLNK 120
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 0.45
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
V+++G+ G GKS L + ++ E Y
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKY 32
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 0.47
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 7/122 (5%)
Query: 11 VMLIGNAGSGKSILINKML-------SSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEK 63
+ ++G GKS L+NK+L S T + +E+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 64 KAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHN 123
K N + ++ + V+ ++ + ++ D
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 124 IM 125
Sbjct: 128 EK 129
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 27.9 bits (62), Expect = 0.48
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
+L +P + +IG +G+GKS LI + P
Sbjct: 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.0 bits (62), Expect = 0.49
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEM 52
+L +P+ + V LIG G+GK+ ++ + + + + +
Sbjct: 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.5 bits (60), Expect = 0.52
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
V+LIG++G GKS L+++ +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLES 33
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 27.5 bits (60), Expect = 0.54
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
+++IGN+ GK+ + + +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAF 34
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 0.54
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 6/138 (4%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V+LIG G GKS L N + + Y + M+
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------ILLD 59
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAM 130
NK ++ D M DAY V T + + + + + + +
Sbjct: 60 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 119
Query: 131 NPTSGSFTIEPRLQRHFY 148
+
Sbjct: 120 KSDLVRCREVSVSEGRAC 137
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 0.58
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 3 LFIPKRKPVMLIGNAGSGKSILINKMLSSLP 33
L P + V+ +G G+GKS I + L S
Sbjct: 9 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG 39
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.8 bits (61), Expect = 0.59
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 16/115 (13%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++L+G SGKS ++ +M T + F K +
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQV----------------DKVNFHMF 52
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIM 125
G + +V A V + + + +R + +L +I
Sbjct: 53 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 107
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.7 bits (60), Expect = 0.59
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
++L+G A GKS ++ + +S+ E
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENK 32
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 27.6 bits (61), Expect = 0.61
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP 33
KR + L G A +GK+ + + ++P
Sbjct: 101 FGKRNTIWLFGPATTGKTNIAEAIAHTVP 129
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 0.63
Identities = 17/134 (12%), Positives = 37/134 (27%), Gaps = 10/134 (7%)
Query: 6 PKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKA 65
PK + V+++G G GK+ I K+ + + + ++ Q L + ++ +
Sbjct: 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQ--LSEWGKRLS 61
Query: 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQP------HTVIRQYMDYQHWYDR--QKLS 117
P D + M+ R K
Sbjct: 62 IPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKAD 121
Query: 118 LKDIHNIMFVSAMN 131
++ + V
Sbjct: 122 PEEPKEVWLVLDAV 135
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.1 bits (59), Expect = 0.67
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
++IG+ G GKS L+++
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADC 33
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 27.4 bits (61), Expect = 0.69
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
NL I + ++L+G +G GK+ + + P
Sbjct: 26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 58
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 27.2 bits (59), Expect = 0.70
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 11 VMLIGNAGSGKSILINKMLSS 31
++++G GKS L+N++L+
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNE 23
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.6 bits (61), Expect = 0.70
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37
NL I + + V+ +G +G GKS L+ M++ L T
Sbjct: 20 NLDIHEGEFVVFVGPSGCGKSTLLR-MIAGLETITS 54
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.4 bits (59), Expect = 0.72
Identities = 12/116 (10%), Positives = 26/116 (22%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
V G + +GKS +N + + + T E+ L
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVP 78
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMF 126
+ + + G V + D + ++
Sbjct: 79 EEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.3 bits (59), Expect = 0.72
Identities = 11/120 (9%), Positives = 30/120 (25%), Gaps = 13/120 (10%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
++ +G +GK+ L++ + + T E+
Sbjct: 3 LLFLGLDNAGKTTLLHMLKND-------------RLATLQPTWHPTSEELAIGNIKFTTF 49
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVSAM 130
G + PEV+ + ++ + + D + +
Sbjct: 50 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 109
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 0.74
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETY 37
+P K ++++G+ G GKS L + + Y
Sbjct: 2 LPTYK-LVVVGDGGVGKSALTIQFFQKIFVPDY 33
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 0.74
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 11 VMLIGNAGSGKSILINKMLSSL 32
+++ G G+GKS+L+ ++ +
Sbjct: 53 LLVNGATGTGKSVLLRELAYTG 74
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.3 bits (59), Expect = 0.75
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
++++G G GKS L +++ + + Y
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEY 32
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.0 bits (58), Expect = 0.81
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 11 VMLIGNAGSGKSILINKML 29
V++ G +GKS L+N +
Sbjct: 4 VVIAGRPNAGKSSLLNALA 22
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.4 bits (60), Expect = 0.86
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTS 41
V + G GSGKS IN + E A +
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKT 89
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 0.90
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
V+L+G GK+ L+ + + + +
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKH 32
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 27.2 bits (60), Expect = 0.93
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
+L + + ++L+G +G GK+ + + P
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP 55
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.0 bits (58), Expect = 0.96
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYAL 39
+++G +GKS +I ++ L L
Sbjct: 29 APITLVLGLRRTGKSSIIKIGINELNLPYIYL 60
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 26.8 bits (58), Expect = 1.0
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 10 PVMLI-GNAGSGKSILINKMLSSLPPETYAL 39
V L+ G G+GK+ L+ +L+ A+
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAV 34
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 26.8 bits (59), Expect = 1.1
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
+ + + + L+G G+GKS L+ ++ +
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTS 50
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.5 bits (57), Expect = 1.2
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPP 34
+ V+L G + GKS ++ + +P
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPN 28
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 1.2
Identities = 14/117 (11%), Positives = 29/117 (24%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRN 68
K ++ IG GSGKS L + L + + ++ +
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQ 60
Query: 69 FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIM 125
+ V+ + I D+++ R +
Sbjct: 61 KMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLF 117
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.6 bits (58), Expect = 1.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
N+ I + ++G +G+GK+ + + P
Sbjct: 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVP 57
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.6 bits (58), Expect = 1.3
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
+L + + +++G G+GK++ + + P
Sbjct: 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVP 52
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.5 bits (57), Expect = 1.4
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 11 VMLIGNAGSGKSILINKMLS 30
++L+G +GK+ L+ ++ S
Sbjct: 19 ILLLGLDNAGKTTLLKQLAS 38
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.7 bits (59), Expect = 1.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 1 MNLFIPKRKPVMLIGNAGSGKSILIN 26
+NL I + + V ++G +GSGKS ++N
Sbjct: 24 VNLNIKEGEFVSIMGPSGSGKSTMLN 49
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 1.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPP 34
++ + K ++IG GSGKS LIN + L
Sbjct: 24 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 56
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.4 bits (57), Expect = 1.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 11 VMLIGNAGSGKSILINKM 28
++L+G SGKS I +M
Sbjct: 5 LLLLGTGESGKSTFIKQM 22
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.2 bits (56), Expect = 1.8
Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 16/153 (10%)
Query: 11 VMLIGNAGSGKSILINKML------SSLPPETYALTSVPFNFYTSSEMLQK-----VLEK 59
V L+G +GKS L+ M + P T + +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 60 PLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLK 119
K G F I + A ++ +R+ + ++ SL
Sbjct: 64 SEGKGLGLEF-----LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118
Query: 120 DIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFAL 152
++ + + + + + V AL
Sbjct: 119 ALNKVDLLEEEAVKALADALAREGLAVLPVSAL 151
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 26.3 bits (56), Expect = 1.8
Identities = 9/104 (8%), Positives = 25/104 (24%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFG 70
+ L G + GKS IN +++ + + ++ +
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85
Query: 71 PPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQ 114
+ ++ + VQ + +
Sbjct: 86 KSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEF 129
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 25.9 bits (57), Expect = 1.9
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32
PK+ ++ G A +GKS + +
Sbjct: 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI 77
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.2 bits (57), Expect = 1.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 11 VMLIGNAGSGKSILINKML 29
V ++G +GKS L+NK+
Sbjct: 35 VAIVGLYRTGKSYLMNKLA 53
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.2 bits (57), Expect = 1.9
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 2 NLFIPKRKP--VMLIGNAGSGKSILINKM 28
L +P P +M++G G+GK+ K+
Sbjct: 3 KLNVPPEPPFVIMVVGVNGTGKTTSCGKL 31
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 26.0 bits (56), Expect = 2.0
Identities = 12/116 (10%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 13 LIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRNFGPP 72
++G SGK+ L+ K +++ E + + +V + + + ++ ++AG
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAV 65
Query: 73 GNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFVS 128
++ + +D + + + ++ V
Sbjct: 66 EGDGLLQLHLRRPLWRLD-------DVLALYAPLRLDLVLVEGYKQERHPKVVLVR 114
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.8 bits (55), Expect = 2.1
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGRN 68
K V ++G SGKS+L+NK+ + N ++ E ++ + + L
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVF------------NTTSAWEYGREFVFEKLGGDEQAM 55
Query: 69 FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMF 126
+ + ++ ++ T + Y+ + D +
Sbjct: 56 QYSDYPQMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEY 113
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.0 bits (56), Expect = 2.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 11 VMLIGNAGSGKSILINKMLSS 31
V L+G GKS L++ + S+
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSA 24
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 25.7 bits (55), Expect = 2.3
Identities = 7/24 (29%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 10 PVM-LIGNAGSGKSILINKMLSSL 32
P++ +G+GK+ L+ K++ +L
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLIPAL 26
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.8 bits (55), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLP 33
+K ++ IG GSGKS + ++ P
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNP 27
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.8 bits (55), Expect = 2.4
Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 14/125 (11%)
Query: 8 RKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAGR 67
+K ++ G AG GKS ++ + L + Y +++ ++
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQL----------DNSAYIEGDIINHMVVGGYRPPWES 51
Query: 68 NFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIMFV 127
+ I + + I + + + + D+ +
Sbjct: 52 DELLALTWKNITDLTVNFL----LAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFII 107
Query: 128 SAMNP 132
N
Sbjct: 108 LWTNR 112
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.9 bits (55), Expect = 2.6
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 5/129 (3%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSS--LPPETYALTSVPFNFYTSSEMLQKVLEKPLE 62
I + G +GK+ + + + + LP + T + L E
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 79
Query: 63 KKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIH 122
+ + N ++ L D
Sbjct: 80 ---RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 123 NIMFVSAMN 131
+SA
Sbjct: 137 GRGELSARQ 145
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 25.5 bits (54), Expect = 2.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETY 37
V+L+G G GKS L
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEA 30
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.8 bits (55), Expect = 3.0
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKML--SSLPPETYALTSVPFNFYTSSEMLQKVLEK 59
I + + G GSGK+ L + + LPPE L T + + + +
Sbjct: 33 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIRE 89
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.9 bits (55), Expect = 3.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 12 MLIGNAGSGKSILINKMLSSLPPET 36
++IG GSGKS L++ +L L
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWPL 51
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 25.6 bits (55), Expect = 3.0
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPETYAL 39
++ +G+GKS LI +L + P +
Sbjct: 3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQV 33
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 25.3 bits (54), Expect = 3.2
Identities = 8/63 (12%), Positives = 13/63 (20%)
Query: 66 GRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNIM 125
G+ +D + V + Y Y H R K
Sbjct: 81 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFN 140
Query: 126 FVS 128
+
Sbjct: 141 MIE 143
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.3 bits (54), Expect = 3.4
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSL 32
K ++ G G+GK++L+++ + +
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFVENA 50
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.4 bits (54), Expect = 3.6
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKAG 66
+ ++L G + +GKS ++ + S LP A +M + G
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 25.1 bits (54), Expect = 3.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 7 KRKPVMLIGNAGSGKSILINKM 28
R L+G GSGK+ K+
Sbjct: 9 DRNLWFLVGLQGSGKTTTAAKL 30
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE
{Haemophilus influenzae [TaxId: 727]}
Length = 171
Score = 25.3 bits (54), Expect = 3.9
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 4 FIPKRKPVMLIGNAGSGKSILINKM 28
++ + V+++G G+ K +L+ +
Sbjct: 14 WLRPNQHVLILGAGGATKGVLLPLL 38
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 25.2 bits (55), Expect = 3.9
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 15 GNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQ 54
G G+G + ++ + L T + + PF+F Q
Sbjct: 97 GGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQ 136
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 25.1 bits (53), Expect = 4.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 8 RKPVMLIGNAGSGKS 22
++ + L+G G+GKS
Sbjct: 2 KRNIFLVGPMGAGKS 16
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 24.9 bits (53), Expect = 4.3
Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 9 KPVMLIGNAGSGKSILINKMLS 30
+P+ ++G G G + + + L+
Sbjct: 3 EPIFMVGARGCGMTT-VGRELA 23
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 24.7 bits (53), Expect = 5.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 11 VMLIGNAGSGKSILINKML 29
+ G +G GKS L+N +
Sbjct: 100 TVFAGQSGVGKSSLLNAIS 118
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 25.1 bits (53), Expect = 5.4
Identities = 15/127 (11%), Positives = 31/127 (24%), Gaps = 3/127 (2%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLP-PETYALTSVPFNFYTSSEMLQKVLEKPLEK 63
+ L G +GKS L + + + P + + + V + +
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 90
Query: 64 KAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHN 123
+ G + P + + N + L D
Sbjct: 91 RFGLD--PDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG 148
Query: 124 IMFVSAM 130
+SA
Sbjct: 149 RGELSAR 155
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 24.8 bits (53), Expect = 5.4
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPF 44
+ L G + SGKS L ++ L +
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 60
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.8 bits (53), Expect = 5.5
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 11 VMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYT 48
+ + G G+GKS + L E + + + +
Sbjct: 57 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 94
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli
[TaxId: 562]}
Length = 103
Score = 23.9 bits (52), Expect = 5.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 8 RKPVMLIGNAGSGKSILINKM 28
+K + L +AG S+L++KM
Sbjct: 1 KKHIYLFSSAGMSTSLLVSKM 21
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like
protein HI0607 {Haemophilus influenzae [TaxId: 727]}
Length = 167
Score = 24.5 bits (52), Expect = 6.0
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSIL 24
+ K V++ G+ G K+++
Sbjct: 11 KYHLNKNAKVIVHGSGGMAKAVV 33
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 24.5 bits (52), Expect = 6.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 11 VMLIGNAGSGKSILINKMLSSL 32
++++G GK+ + K+ L
Sbjct: 5 IVMVGLPARGKTYISKKLTRYL 26
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 24.5 bits (52), Expect = 6.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 9 KPVMLIGNAGSGKSILINKMLSSLP 33
+L G GSGK+ L + +
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 24.7 bits (52), Expect = 6.7
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEM 52
I G +GK+ L + + + + +E
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 24.2 bits (52), Expect = 6.8
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 49 SSEMLQKVLEKPLEKKAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQ 108
+E LQ+ L + F + MI +D D G + + +
Sbjct: 17 DAEELQRCLTQSGINGTYSPFSLETCRIMIAMLD------RDHTGKMGFNAFKELWAALN 70
Query: 109 HWYDRQKLSLKD 120
W + +D
Sbjct: 71 AWKENFMTVDQD 82
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 24.5 bits (52), Expect = 6.9
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 6 PKRKP---VMLIGNAGSGKSILINKML 29
PK +P + ++G+ GK+ L+ +
Sbjct: 3 PKVQPEVNIGVVGHVDHGKTTLVQAIT 29
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 24.2 bits (51), Expect = 7.1
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 6 PKRKPVMLIGNAGSGKS 22
PK +++ G G+GK+
Sbjct: 3 PKGINILITGTPGTGKT 19
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 24.1 bits (52), Expect = 7.4
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 2 NLFIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSV 42
LF P ++ + ++ + + + +ALT V
Sbjct: 30 QLFNPNNCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGV 70
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId:
10665]}
Length = 169
Score = 24.2 bits (52), Expect = 7.5
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 113 RQKLSLKDIHNIMFVSAMNPTSGSFTIEPRLQRHFYVFALR 153
++ + L D I +A+ I + RH + +++
Sbjct: 1 KEGICLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIK 41
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 24.2 bits (51), Expect = 8.2
Identities = 12/129 (9%), Positives = 27/129 (20%), Gaps = 8/129 (6%)
Query: 4 FIPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEK 63
F K K ++L+G G+ +I FN + + +
Sbjct: 14 FDIKGKTMVLLGAGGASTAIGA------QGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE 67
Query: 64 KAGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHN 123
F + + D + + +
Sbjct: 68 NTDCVVTVTDLADQQAFAEALASA--DILTNGTKVGMKPLENESLVNDISLLHPGLLVTE 125
Query: 124 IMFVSAMNP 132
++ M
Sbjct: 126 CVYNPHMTK 134
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 24.4 bits (52), Expect = 8.6
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 24/146 (16%)
Query: 11 VMLIGNAGSGKSILINKMLSS--LPPETYALTSVPFNF-------------------YTS 49
+ ++G +GKS ++ + LP + +T P +T
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTD 88
Query: 50 SEMLQKVLEKPLEKKAGRN--FGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTV-IRQYMD 106
E ++ +E ++ G N P +Y +N+ VD G + ++
Sbjct: 89 FEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE 148
Query: 107 YQHWYDRQKLSLKDIHNIMFVSAMNP 132
+Q + K+ I+ VS N
Sbjct: 149 FQIRDMLMQFVTKENCLILAVSPANS 174
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 24.3 bits (51), Expect = 8.7
Identities = 15/148 (10%), Positives = 37/148 (25%), Gaps = 5/148 (3%)
Query: 5 IPKRKPVMLIGNAGSGKSILINKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKK 64
+ + G GSGK+ ++++ +L F + + K +
Sbjct: 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL-----QNPEFLFYDEEAVSKGEVAQPKAVYID 85
Query: 65 AGRNFGPPGNKTMIYFVDDMNMPEVDAYGTVQPHTVIRQYMDYQHWYDRQKLSLKDIHNI 124
F P M +D + + Q + + D + +
Sbjct: 86 TEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVV 145
Query: 125 MFVSAMNPTSGSFTIEPRLQRHFYVFAL 152
+ + +R +
Sbjct: 146 IDSLTSTFRNEYTGRGKLAERQQKLGRH 173
>d2b0ja1 a.100.1.11 (A:243-344)
5,10-methenyltetrahydromethanopterin hydrogenase, HMD
{Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 102
Score = 23.3 bits (50), Expect = 9.4
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 25 INKMLSSLPPETYALTSVPFNFYTSSEMLQKVLEKPLEKKA 65
I M +L P T+ F +E+L L+ LEK
Sbjct: 60 IANMEEALDPAALLGTADSMCFGPLAEILPTALKV-LEKHK 99
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella
putrefaciens [TaxId: 24]}
Length = 100
Score = 23.4 bits (50), Expect = 9.7
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 46 FYTSSEMLQKVLEKPLEKKAGRNF------------GPPGNKTMIYFVDDMNMPEVDAYG 93
FYT SE++ + ++ +AG+ P + + + V D E+
Sbjct: 6 FYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTY 65
Query: 94 T 94
Sbjct: 66 D 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 624,043
Number of extensions: 28161
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 168
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)