BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2660
         (149 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OSE|A Chain A, Structure Of The Kinase Associated Domain 1 (Ka1) From
           Mark1 Kinase
          Length = 120

 Score =  152 bits (383), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 76/86 (88%)

Query: 58  KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
           KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct: 21  KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 80

Query: 118 EIEVCKLPRLSLNGVRFKRISDHIIS 143
           E+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 81  EMEVCKLPRLSLNGVRFKRISGTSIA 106


>pdb|1UL7|A Chain A, Solution Structure Of Kinase Associated Domain 1 Of Mouse
           MapMICROTUBULE AFFINITY-Regulating Kinase 3
          Length = 102

 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 72/83 (86%)

Query: 61  SLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIE 120
           S RFTWSMKTTSS DP+++  EIRKVL ANNCDYEQRERFLL CVHGD + ++LVQWE+E
Sbjct: 6   SGRFTWSMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEME 65

Query: 121 VCKLPRLSLNGVRFKRISDHIIS 143
           VCKLPRLSLNGVRFKRIS   I+
Sbjct: 66  VCKLPRLSLNGVRFKRISGTSIA 88


>pdb|1V5S|A Chain A, Solution Structure Of Kinase Associated Domain 1 Of Mouse
           MapMICROTUBULE AFFINITY-Regulating Kinase 3
          Length = 126

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 68/95 (71%), Gaps = 3/95 (3%)

Query: 49  SNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGD 108
           ++A N D   P +    +   + SS D   +  EIRKVL ANNCDYEQRERFLL CVHGD
Sbjct: 15  AHAHNKDYDIPTTENLYFQGSSGSSGD---MMREIRKVLGANNCDYEQRERFLLFCVHGD 71

Query: 109 PNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
            + ++LVQWE+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 72  GHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIA 106


>pdb|2QAC|A Chain A, The Closed Mtip-myosina-tail Complex From The Malaria
           Parasite Invasion Machinery
 pdb|4AOM|A Chain A, Mtip And Myoa Complex
          Length = 146

 Score = 29.3 bits (64), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 76  PNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQ 116
           P+ I  +  K L  +N  YEQ   +L +CVH   N + L++
Sbjct: 48  PSSIDEKKIKELYGDNLTYEQYLEYLSICVHDKDNVEELIK 88


>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
          Length = 352

 Score = 26.2 bits (56), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 75  DPNEIRAEIRKVLD---ANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
           D  +++A+I   L    AN   +E+   F L+C   D    S+V+W
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEW 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,540,166
Number of Sequences: 62578
Number of extensions: 166540
Number of successful extensions: 302
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 13
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)