BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2660
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9TW45|PAR1_CAEEL Serine/threonine-protein kinase par-1 OS=Caenorhabditis elegans
GN=par-1 PE=1 SV=1
Length = 1192
Score = 158 bits (399), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/104 (72%), Positives = 86/104 (82%), Gaps = 2/104 (1%)
Query: 35 GPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDY 94
GP+A P S +++ VKPRSLRFTWSMKTTSS P+++ EIRKVLDAN CDY
Sbjct: 1072 GPIA--PGAGQVAPSLPIHEGDVKPRSLRFTWSMKTTSSLAPDDMMREIRKVLDANGCDY 1129
Query: 95 EQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
EQRER+++LCVHGDPNTDSLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 1130 EQRERYMILCVHGDPNTDSLVQWEMEVCKLPRLSLNGVRFKRIS 1173
>sp|A8WYE4|PAR1_CAEBR Serine/threonine-protein kinase par-1 OS=Caenorhabditis briggsae
GN=par-1 PE=3 SV=1
Length = 1088
Score = 157 bits (397), Expect = 2e-38, Method: Composition-based stats.
Identities = 74/104 (71%), Positives = 83/104 (79%), Gaps = 3/104 (2%)
Query: 35 GPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDY 94
GP+ P V + VKPRSLRFTWSMKTTSS P+++ EIRKVLDAN CDY
Sbjct: 969 GPLTPGTPP---VAQAMTQEGDVKPRSLRFTWSMKTTSSLAPDDMMREIRKVLDANGCDY 1025
Query: 95 EQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
EQRER+++LCVHGDPNTDSLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 1026 EQRERYMILCVHGDPNTDSLVQWEMEVCKLPRLSLNGVRFKRIS 1069
>sp|Q9P0L2|MARK1_HUMAN Serine/threonine-protein kinase MARK1 OS=Homo sapiens GN=MARK1 PE=1
SV=2
Length = 795
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/86 (82%), Positives = 76/86 (88%)
Query: 58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
KPRSLRFTWSMKTTSS DPN++ EIRKVLDANNCDYEQ+ERFLL CVHGD DSLVQW
Sbjct: 696 KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 755
Query: 118 EIEVCKLPRLSLNGVRFKRISDHIIS 143
E+EVCKLPRLSLNGVRFKRIS I+
Sbjct: 756 EMEVCKLPRLSLNGVRFKRISGTSIA 781
>sp|O08678|MARK1_RAT Serine/threonine-protein kinase MARK1 OS=Rattus norvegicus GN=Mark1
PE=1 SV=1
Length = 793
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/88 (80%), Positives = 76/88 (86%)
Query: 56 QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLV 115
+ KPRSLRFTWSMKTTSS DPN++ EIRKVLDAN CDYEQRERFLL CVHGD DSLV
Sbjct: 692 EAKPRSLRFTWSMKTTSSMDPNDMVREIRKVLDANTCDYEQRERFLLFCVHGDARQDSLV 751
Query: 116 QWEIEVCKLPRLSLNGVRFKRISDHIIS 143
QWE+EVCKLPRLSLNGVRFKRIS I+
Sbjct: 752 QWEMEVCKLPRLSLNGVRFKRISGTSIA 779
>sp|Q8VHJ5|MARK1_MOUSE Serine/threonine-protein kinase MARK1 OS=Mus musculus GN=Mark1 PE=1
SV=2
Length = 795
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 76/88 (86%)
Query: 56 QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLV 115
+ KPRSLRFTWSMKTTSS DPN++ EIRKVLDAN CDYEQ+ERFLL CVHGD DSLV
Sbjct: 694 EAKPRSLRFTWSMKTTSSMDPNDMLREIRKVLDANTCDYEQKERFLLFCVHGDARQDSLV 753
Query: 116 QWEIEVCKLPRLSLNGVRFKRISDHIIS 143
QWE+EVCKLPRLSLNGVRFKRIS I+
Sbjct: 754 QWEMEVCKLPRLSLNGVRFKRISGTSIA 781
>sp|P27448|MARK3_HUMAN MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens
GN=MARK3 PE=1 SV=4
Length = 753
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 78/90 (86%)
Query: 54 DDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDS 113
+ + KPRSLRFTWSMKTTSS DP ++ EIRKVLDANNCDYEQRERFLL CVHGD + ++
Sbjct: 650 NKEAKPRSLRFTWSMKTTSSMDPGDMMREIRKVLDANNCDYEQRERFLLFCVHGDGHAEN 709
Query: 114 LVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
LVQWE+EVCKLPRLSLNGVRFKRIS I+
Sbjct: 710 LVQWEMEVCKLPRLSLNGVRFKRISGTSIA 739
>sp|Q03141|MARK3_MOUSE MAP/microtubule affinity-regulating kinase 3 OS=Mus musculus
GN=Mark3 PE=1 SV=2
Length = 753
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 84/99 (84%), Gaps = 1/99 (1%)
Query: 46 NVVSNAVNDD-QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLC 104
NV S +++ + KPRSLRFTWSMKTTSS DP+++ EIRKVLDANNCDYEQRERFLL C
Sbjct: 641 NVSSEQKDENREAKPRSLRFTWSMKTTSSMDPSDMMREIRKVLDANNCDYEQRERFLLFC 700
Query: 105 VHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
VHGD + ++LVQWE+EVCKLPRLSLNGVRFKRIS I+
Sbjct: 701 VHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIA 739
>sp|Q8VHF0|MARK3_RAT MAP/microtubule affinity-regulating kinase 3 OS=Rattus norvegicus
GN=Mark3 PE=2 SV=1
Length = 797
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
Query: 46 NVVSNAVNDD-QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLC 104
NV S +++ + KPRSLRFTWSMKTTSS DP+++ EIRKVLDAN CDYEQRERFLL C
Sbjct: 685 NVSSEQKDENREAKPRSLRFTWSMKTTSSMDPSDMMREIRKVLDANTCDYEQRERFLLFC 744
Query: 105 VHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
VHGD + +SLVQWE+EVCKLPRLSLNGVRFKRIS I+
Sbjct: 745 VHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRISGTSIA 783
>sp|Q05512|MARK2_MOUSE Serine/threonine-protein kinase MARK2 OS=Mus musculus GN=Mark2 PE=1
SV=3
Length = 776
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 81/112 (72%), Gaps = 11/112 (9%)
Query: 45 HNVVSNAVNDD-----QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRER 99
H V S + D + KPRSLRFTWSMKTTSS +PNE+ EIRKVLDAN+C E ER
Sbjct: 659 HVVGSGGTDKDKEEFREAKPRSLRFTWSMKTTSSMEPNEMMREIRKVLDANSCQSELHER 718
Query: 100 FLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISD------HIISKI 145
++LLCVHG P ++ VQWE+EVCKLPRLSLNGVRFKRIS +I SKI
Sbjct: 719 YMLLCVHGTPGHENFVQWEMEVCKLPRLSLNGVRFKRISGTSMAFKNIASKI 770
>sp|O08679|MARK2_RAT Serine/threonine-protein kinase MARK2 OS=Rattus norvegicus GN=Mark2
PE=1 SV=1
Length = 722
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 76/96 (79%), Gaps = 6/96 (6%)
Query: 56 QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLV 115
+ KPRSLRFTWSMKTTSS +PNE+ EIRKVLDAN+C E ER++LLCVHG P ++ V
Sbjct: 621 EAKPRSLRFTWSMKTTSSMEPNEMMREIRKVLDANSCQSELHERYMLLCVHGTPGHENFV 680
Query: 116 QWEIEVCKLPRLSLNGVRFKRISD------HIISKI 145
QWE+EVCKLPRLSLNGVRFKRIS +I SKI
Sbjct: 681 QWEMEVCKLPRLSLNGVRFKRISGTSMAFKNIASKI 716
>sp|Q7KZI7|MARK2_HUMAN Serine/threonine-protein kinase MARK2 OS=Homo sapiens GN=MARK2 PE=1
SV=2
Length = 788
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 81/112 (72%), Gaps = 12/112 (10%)
Query: 46 NVVSNAVNDDQ------VKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRER 99
+VV + ND + KPRSLRFTWSMKTTSS +PNE+ EIRKVLDAN+C E E+
Sbjct: 671 HVVGSGGNDKEKEEFREAKPRSLRFTWSMKTTSSMEPNEMMREIRKVLDANSCQSELHEK 730
Query: 100 FLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISD------HIISKI 145
++LLC+HG P + VQWE+EVCKLPRLSLNGVRFKRIS +I SKI
Sbjct: 731 YMLLCMHGTPGHEDFVQWEMEVCKLPRLSLNGVRFKRISGTSMAFKNIASKI 782
>sp|Q96L34|MARK4_HUMAN MAP/microtubule affinity-regulating kinase 4 OS=Homo sapiens
GN=MARK4 PE=1 SV=1
Length = 752
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 56 QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDP-NTDSL 114
+ PR LRF WS+K TSSR P + A +R+ A C Q + FLL C+HG + L
Sbjct: 650 ETAPRLLRFPWSVKLTSSRPPEALMAALRQATAAARCRCRQPQPFLLACLHGGAGGPEPL 709
Query: 115 VQWEIEVCKLPRLSLNGVRFKRIS 138
+E+EVC+LPR L GV F+R++
Sbjct: 710 SHFEVEVCQLPRPGLRGVLFRRVA 733
>sp|Q8CIP4|MARK4_MOUSE MAP/microtubule affinity-regulating kinase 4 OS=Mus musculus
GN=Mark4 PE=1 SV=1
Length = 752
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 56 QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDP-NTDSL 114
+ PR LRF WS+K TSSR P + A +R+ A C Q + FLL C+HG + L
Sbjct: 650 ETAPRLLRFPWSVKLTSSRPPEALMAALRQATAAARCRCRQPQPFLLACLHGGAGGPEPL 709
Query: 115 VQWEIEVCKLPRLSLNGVRFKRIS 138
+E+EVC+LPR L GV F+R++
Sbjct: 710 SHFEVEVCQLPRPGLRGVLFRRVA 733
>sp|Q54DF2|MRKA_DICDI Probable serine/threonine-protein kinase MARK-A OS=Dictyostelium
discoideum GN=mrkA PE=3 SV=1
Length = 1060
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
+PR +RF + + TT+ +D E+ ++ KV+D + ++ FL+ C T+ V++
Sbjct: 964 EPRIVRFVFGVNTTTMKDAPELMQQVLKVVDTFCIPHTKKAPFLIEC-----ETEG-VRF 1017
Query: 118 EIEVCKLPRLSLNGVRFKRIS 138
IE+C+LPRLS+NG++FKRI
Sbjct: 1018 SIEICRLPRLSVNGLKFKRIG 1038
>sp|Q28GW8|MELK_XENTR Maternal embryonic leucine zipper kinase OS=Xenopus tropicalis
GN=melk PE=2 SV=1
Length = 652
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 59 PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWE 118
PR LR +++ TT+ +P ++ +I KVL + N DY Q+ + L C +Q+E
Sbjct: 555 PRKLRAHYNVTTTNIMNPEQLLNQIVKVLPSKNVDYVQK-GYTLKCKTQSDFGKVTMQFE 613
Query: 119 IEVCKLPRLSLNGVRFKRI 137
+EVC+L + + G+R +R+
Sbjct: 614 LEVCQLSKSEMVGIRRQRL 632
>sp|Q9NYC9|DYH9_HUMAN Dynein heavy chain 9, axonemal OS=Homo sapiens GN=DNAH9 PE=1 SV=3
Length = 4486
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 1 MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGP 36
++ +E A+F E++P L P++H VCL+WA CK Y+ P
Sbjct: 320 LEALENAEFPEVKPQLRPLLHVVCLIWATCKSYRSP 355
>sp|Q91821|MELK_XENLA Maternal embryonic leucine zipper kinase OS=Xenopus laevis GN=melk
PE=1 SV=2
Length = 651
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 59 PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWE 118
PR LR +++ TT+ +P ++ +I +VL + N DY Q+ + L C +Q+E
Sbjct: 554 PRKLRAHYNVTTTNIVNPEQLLNQIVRVLPSKNVDYVQK-GYTLKCKTQSDFGKVTMQFE 612
Query: 119 IEVCKLPRLSLNGVRFKRI 137
+EVC+L + + G+R +R+
Sbjct: 613 LEVCQLSKSEVVGIRRQRL 631
>sp|Q54TA3|MRKC_DICDI Probable serine/threonine-protein kinase MARK-C OS=Dictyostelium
discoideum GN=mrkC PE=3 SV=1
Length = 773
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 53 NDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTD 112
N PR+ + + TT+++ P + E+++ L+ + +++ +L LC + D
Sbjct: 673 NQHMASPRTSKGIFKSSTTTTKSPEKTIIELKRSLEESGLFTKKKGPYLFLCF----DED 728
Query: 113 SLVQWEIEVCKLPRLSLNGVRFKRIS 138
+ V+++IE+ K+ L L G++ KR+S
Sbjct: 729 NSVKFQIEIVKICNLDLTGIQLKRLS 754
>sp|Q61846|MELK_MOUSE Maternal embryonic leucine zipper kinase OS=Mus musculus GN=Melk
PE=1 SV=2
Length = 643
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 59 PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWE 118
PR + +++ TT +P+++ +EI +L N D+ Q+ + L C +Q+E
Sbjct: 546 PRKRKLHYNVTTTRLVNPDQLLSEIMAILPKKNVDFVQKG-YTLKCQTQSDFGKVTMQFE 604
Query: 119 IEVCKLPRLSLNGVRFKRI 137
+EVC+L R + G+R +R+
Sbjct: 605 LEVCQLQRPDVVGIRRQRL 623
>sp|P39057|DYHC_HELCR Dynein beta chain, ciliary OS=Heliocidaris crassispina PE=1 SV=1
Length = 4466
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%), Gaps = 3/33 (9%)
Query: 1 MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYY 33
MD++E F+++ P L+P++HTVCL+W+N YY
Sbjct: 299 MDELE---FSDLTPRLAPILHTVCLIWSNSDYY 328
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary OS=Tripneustes gratilla PE=1 SV=1
Length = 4466
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 1 MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYY 33
++ ++ +F +M P L+P++HTVCL+W+N YY
Sbjct: 296 VESLDELEFPDMTPRLAPILHTVCLIWSNSDYY 328
>sp|Q14680|MELK_HUMAN Maternal embryonic leucine zipper kinase OS=Homo sapiens GN=MELK
PE=1 SV=3
Length = 651
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 59 PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWE 118
PR L+ +++ TT +P+++ EI +L + D+ Q+ + L C +Q+E
Sbjct: 554 PRRLKLHYNVTTTRLVNPDQLLNEIMSILPKKHVDFVQKG-YTLKCQTQSDFGKVTMQFE 612
Query: 119 IEVCKLPRLSLNGVRFKRI 137
+EVC+L + + G+R +R+
Sbjct: 613 LEVCQLQKPDVVGIRRQRL 631
>sp|Q54MV2|MRKB_DICDI Probable serine/threonine-protein kinase MARK-B OS=Dictyostelium
discoideum GN=mrkB PE=3 SV=1
Length = 715
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
K RS++ ++ TT+ +P ++ I + L++ Y +R ++ C P ++ + +
Sbjct: 618 KIRSMKGPFNSGTTTMLNPIQLIEHIEENLNSTQISY-RRNFYVFDCKTLCPRNET-INF 675
Query: 118 EIEVCKLPRLSLNGVRFKRIS 138
EIEVCK+ + + G++FKR+S
Sbjct: 676 EIEVCKVNGMDMYGIKFKRLS 696
>sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=1 SV=2
Length = 4485
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGP 36
++++E ADF + F++ ++ T+C +WA +YY P
Sbjct: 296 LEEMEQADFTMLPTFIAKVLDTICFIWATSEYYNTP 331
>sp|F1QGZ6|MELK_DANRE Maternal embryonic leucine zipper kinase OS=Danio rerio GN=melk
PE=2 SV=1
Length = 676
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 59 PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWE 118
PR ++ +++ T+ + +++ +I +L N D+ Q+ + L C +Q+E
Sbjct: 576 PRKIKAQYNVTLTNQTNADQVLNQILSILPEKNVDFVQKG-YTLKCHTQSDFGKVTMQFE 634
Query: 119 IEVCKLPRLSLNGVRFKRISD------HIISKILSVS 149
+EVC L + + G+R +R+ H++ ILS S
Sbjct: 635 LEVCLLQKPEVVGIRRQRLKGDAWVYKHLVEDILSSS 671
>sp|Q96DT5|DYH11_HUMAN Dynein heavy chain 11, axonemal OS=Homo sapiens GN=DNAH11 PE=1 SV=3
Length = 4523
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 4 VEGADFNEMEPFLSPMMHTVCLVWANCKYYQGP 36
++ +F + ++P+ HT+CL+W++ K+Y P
Sbjct: 349 LQETEFPQTRILIAPLFHTICLIWSHSKFYNTP 381
>sp|A0L3N2|DAPE_MAGSM Succinyl-diaminopimelate desuccinylase OS=Magnetococcus sp. (strain
MC-1) GN=dapE PE=3 SV=2
Length = 380
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 23 VCLVWANCKYYQGPMAMEPVP-KHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRA 81
V ++ + QG +P + V + + V P L ++++ ++ P + A
Sbjct: 212 VLAAISSMTFDQGDRFFQPTSLQFTAVQSGGSATNVVPGELTAGFNIRFSAMHTPESLEA 271
Query: 82 EIRKVLDANNCDYEQR--ERFLLLCVHGDPNTDSLVQWEIEVCKL-PRLSLNG----VRF 134
IR+VLD DY+ + L G P +++ +V L P+LS G RF
Sbjct: 272 RIRQVLDGAEVDYDLQMMTSGLPFITEGGPLVEAVKATVAQVTGLEPQLSTGGGTSDARF 331
Query: 135 KRISDHIISKI 145
IS H + +
Sbjct: 332 --ISRHCVQTV 340
>sp|Q69Z23|DYH17_MOUSE Dynein heavy chain 17, axonemal OS=Mus musculus GN=Dnah17 PE=2 SV=2
Length = 4481
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 1 MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGP 36
++++E ADF + F+ ++ T+C +WA ++Y P
Sbjct: 293 LEEMEQADFTMLPSFIVKVLSTICFIWATSEHYNTP 328
>sp|C3LQT9|SECA_VIBCM Protein translocase subunit SecA OS=Vibrio cholerae serotype O1
(strain M66-2) GN=secA PE=3 SV=1
Length = 903
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 48 VSNAVNDDQVKPRSLRFTWSMKTTSSRDPN--EIRAEIRKVLDANNCDYEQ--RERFL 101
V NAV D+ + P+SL W +K R N ++ I+ LDA+N YE+ RER +
Sbjct: 683 VLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPIQSWLDADNKLYEEALRERII 740
>sp|Q9KPH4|SECA_VIBCH Protein translocase subunit SecA OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=secA PE=3
SV=1
Length = 903
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 48 VSNAVNDDQVKPRSLRFTWSMKTTSSRDPN--EIRAEIRKVLDANNCDYEQ--RERFL 101
V NAV D+ + P+SL W +K R N ++ I+ LDA+N YE+ RER +
Sbjct: 683 VLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPIQSWLDADNKLYEEALRERII 740
>sp|A5F5P1|SECA_VIBC3 Protein translocase subunit SecA OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=secA PE=3 SV=1
Length = 903
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 48 VSNAVNDDQVKPRSLRFTWSMKTTSSRDPN--EIRAEIRKVLDANNCDYEQ--RERFL 101
V NAV D+ + P+SL W +K R N ++ I+ LDA+N YE+ RER +
Sbjct: 683 VLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPIQSWLDADNKLYEEALRERII 740
>sp|O55768|VF184_IIV6 Putative helicase 184R OS=Invertebrate iridescent virus 6
GN=IIV6-184R PE=3 SV=1
Length = 971
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 36 PMAMEPVPKHNVVSNAVN--DDQVKPRSL-----RFTWSMKTTSSRDPNEIRAEIRKVLD 88
P+ + + NV + +N D+Q+ P SL W M +S N+ +I K+LD
Sbjct: 167 PVVKTMIDQENVFQDFINSMDNQIMPSSLIDDISSKYWLMYGSSKEGLNK-PYKISKILD 225
Query: 89 ANNCDYEQRERFLL-LCVHGDPNTDSLVQWEI 119
N + + F C+ G P TD+ V++E+
Sbjct: 226 HNQQEISISKCFKSETCIDGSPITDTNVEFEL 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,276,093
Number of Sequences: 539616
Number of extensions: 2070077
Number of successful extensions: 4009
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3977
Number of HSP's gapped (non-prelim): 36
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)