Query psy2660
Match_columns 149
No_of_seqs 193 out of 266
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:58:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ose_A Serine/threonine-protei 100.0 8.8E-37 3E-41 226.5 7.4 96 50-145 13-108 (120)
2 1v5s_A MAP/microtubule affinit 100.0 5.1E-34 1.7E-38 213.8 7.5 92 51-145 17-108 (126)
3 4eai_A 5'-AMP-activated protei 98.9 4.6E-09 1.6E-13 76.3 8.6 76 64-140 6-81 (106)
4 2v8q_A 5'-AMP-activated protei 98.5 4.8E-07 1.7E-11 69.6 9.3 79 65-144 4-82 (157)
5 2y8l_A 5'-AMP-activated protei 98.5 8.2E-07 2.8E-11 69.2 9.4 80 64-144 17-96 (173)
6 4eag_A EG:132E8.2 protein; AMP 98.4 1.4E-06 4.7E-11 65.2 9.1 77 64-141 6-82 (130)
7 2y94_A 5'-AMP-activated protei 98.2 5.5E-06 1.9E-10 71.8 8.6 81 63-144 395-475 (476)
8 2qrd_A SNF1-like protein kinas 97.8 1.4E-05 4.8E-10 60.2 4.1 78 60-140 9-100 (137)
9 3t4n_A Carbon catabolite-derep 97.4 0.00041 1.4E-08 54.3 7.6 74 64-139 49-134 (179)
10 2ehb_D CBL-interacting serine/ 96.6 0.0054 1.9E-07 46.0 6.7 73 70-144 38-110 (143)
11 2zfd_B Putative uncharacterize 95.8 0.03 1E-06 40.8 7.0 70 70-144 36-105 (123)
12 3ost_A Serine/threonine-protei 86.7 1.9 6.4E-05 31.8 6.3 75 65-142 24-107 (128)
13 3m91_B Prokaryotic ubiquitin-l 44.7 15 0.0005 22.2 2.3 23 74-96 14-36 (44)
14 1j3m_A The conserved hypotheti 42.7 19 0.00066 25.1 3.1 27 66-92 2-28 (129)
15 2d9e_A Peregrin; four-helix bu 42.5 4 0.00014 28.9 -0.6 52 17-93 66-117 (121)
16 3isz_A Succinyl-diaminopimelat 41.5 55 0.0019 25.8 6.0 43 54-96 243-285 (377)
17 1vgy_A Succinyl-diaminopimelat 40.5 41 0.0014 27.2 5.1 43 54-96 246-288 (393)
18 1q9u_A Uncharacterized protein 40.1 25 0.00084 24.5 3.3 29 64-92 3-31 (130)
19 1twf_C B44.5, DNA-directed RNA 37.1 24 0.00081 29.3 3.2 27 63-89 227-253 (318)
20 2f7v_A Aectylcitrulline deacet 36.7 44 0.0015 26.8 4.7 44 52-95 234-277 (369)
21 3tx8_A Succinyl-diaminopimelat 35.3 48 0.0017 26.4 4.7 45 52-96 239-286 (369)
22 3gr0_A Protein PRGH; type III 32.6 1.1E+02 0.0036 23.7 6.1 47 73-120 128-195 (197)
23 2i7k_A Bromodomain-containing 27.8 13 0.00043 26.1 -0.0 20 18-37 68-87 (117)
24 1u6t_A SH3 domain-binding glut 27.0 63 0.0022 22.9 3.6 30 68-97 4-36 (121)
25 3jvl_A Bromodomain-containing 26.8 12 0.0004 26.1 -0.3 22 17-38 73-94 (120)
26 3nxb_A CAT eye syndrome critic 26.7 10 0.00034 26.3 -0.7 21 18-38 76-96 (116)
27 3mqm_A Probable histone-lysine 26.4 10 0.00035 26.7 -0.7 21 18-38 75-95 (126)
28 3g0l_A Hwalp4, bromodomain adj 26.3 12 0.00041 25.9 -0.4 20 18-37 73-92 (117)
29 3iu5_A Protein polybromo-1; PB 26.3 12 0.00042 25.9 -0.3 21 18-38 71-91 (116)
30 1wsp_A Axin 1 protein; signali 26.0 1.1E+02 0.0037 20.6 4.5 37 78-122 27-63 (84)
31 3hme_A Bromodomain-containing 25.8 13 0.00043 26.2 -0.3 21 18-38 73-93 (123)
32 3mb4_A Protein polybromo-1; PB 25.6 13 0.00044 26.2 -0.3 21 18-38 81-101 (124)
33 2grc_A Probable global transcr 25.6 17 0.00057 25.8 0.3 22 17-38 77-98 (129)
34 1bdf_A RNA polymerase alpha su 24.3 60 0.002 25.5 3.4 30 61-90 198-227 (235)
35 3dai_A ATPase family AAA domai 23.9 14 0.00048 26.2 -0.4 20 18-37 70-89 (130)
36 3umf_A Adenylate kinase; rossm 23.8 54 0.0019 25.1 3.0 22 72-93 196-217 (217)
37 3p1f_A CREB-binding protein; s 23.6 15 0.0005 25.5 -0.3 21 18-38 74-94 (119)
38 3ljw_A Protein polybromo-1; al 23.4 15 0.00051 25.6 -0.3 21 18-38 74-94 (120)
39 3gk6_A Integron cassette prote 23.4 51 0.0018 23.8 2.7 29 107-135 10-38 (170)
40 2y9j_Y Lipoprotein PRGK, prote 22.7 81 0.0028 23.5 3.7 29 75-104 8-40 (170)
41 3rcw_A Bromodomain-containing 22.2 16 0.00056 25.9 -0.3 20 18-37 73-92 (135)
42 1bxn_I Rubisco, protein (ribul 22.0 1.4E+02 0.0047 22.0 4.7 65 66-140 51-117 (139)
43 3qii_A PHD finger protein 20; 21.7 13 0.00044 25.4 -0.9 17 26-44 31-47 (85)
44 3fkm_X Signaling protein; brom 21.7 20 0.00068 26.6 0.1 22 17-38 82-103 (166)
45 3h0g_C DNA-directed RNA polyme 21.4 30 0.001 28.5 1.1 28 62-89 227-254 (297)
46 2dat_A Possible global transcr 21.2 23 0.00078 24.8 0.3 21 18-38 79-99 (123)
47 3khx_A Putative dipeptidase sa 21.1 80 0.0027 26.7 3.8 38 59-96 363-400 (492)
48 3tlp_A Protein polybromo-1; PB 21.0 23 0.00079 25.5 0.3 22 17-38 90-111 (150)
49 2oss_A HUNK1 protein, bromodom 21.0 23 0.0008 25.0 0.3 22 17-38 82-103 (127)
50 4alg_A Bromodomain-containing 20.9 18 0.00062 26.5 -0.3 21 18-38 94-114 (154)
51 2ouo_A HUNK1 protein, bromodom 20.8 24 0.0008 25.1 0.3 22 17-38 86-107 (130)
52 3d7c_A General control of amin 20.4 24 0.00084 24.1 0.3 22 17-38 66-87 (112)
53 1lfw_A PEPV; hydrolase, dipept 20.3 88 0.003 25.8 3.8 38 59-97 339-377 (470)
54 3pfe_A Succinyl-diaminopimelat 20.2 1.6E+02 0.0054 24.5 5.4 44 53-96 325-371 (472)
55 3gr1_A Protein PRGH; type III 20.1 1.9E+02 0.0065 22.8 5.5 47 73-120 128-195 (227)
56 3mru_A Aminoacyl-histidine dip 20.1 63 0.0021 27.4 2.9 38 61-98 361-398 (490)
No 1
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=100.00 E-value=8.8e-37 Score=226.50 Aligned_cols=96 Identities=74% Similarity=1.177 Sum_probs=85.6
Q ss_pred CCCCCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCC
Q psy2660 50 NAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSL 129 (149)
Q Consensus 50 ~~~~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l 129 (149)
+..++++++||++||+|||+|||+++|++||+||++||+++||+|+++|+|+|.|.|+++.+++.|+||||||+||++++
T Consensus 13 ~~~~~~~~kPR~lk~~~~v~tTS~~~P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l 92 (120)
T 3ose_A 13 DKEEGKDSKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSL 92 (120)
T ss_dssp --------CCCBCCCCTTCCCEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTE
T ss_pred cccccCCCCCcEEeceeeecCcccCCHHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCc
Confidence 34567889999999999999999999999999999999999999999989999999999888889999999999999999
Q ss_pred ceeeEEEecCccceee
Q psy2660 130 NGVRFKRISDHIISKI 145 (149)
Q Consensus 130 ~GIrfKRisGd~w~~~ 145 (149)
|||+||||+||+|.|-
T Consensus 93 ~gV~~kRi~Gd~~~yk 108 (120)
T 3ose_A 93 NGVRFKRISGTSIAFK 108 (120)
T ss_dssp EEEEEEEEESCHHHHH
T ss_pred eeEEEEecCCCHHHHH
Confidence 9999999999999983
No 2
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=100.00 E-value=5.1e-34 Score=213.84 Aligned_cols=92 Identities=61% Similarity=0.958 Sum_probs=87.3
Q ss_pred CCCCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCc
Q psy2660 51 AVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLN 130 (149)
Q Consensus 51 ~~~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~ 130 (149)
+-+.+.++||++|+.| |||+++|++||.||+|||+++||+|+++|+|.|.|.|+++.+++.|+|||||||||+++++
T Consensus 17 ~~~~~~~~pr~lk~~f---tTSsk~P~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~ 93 (126)
T 1v5s_A 17 AHNKDYDIPTTENLYF---QGSSGSSGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLN 93 (126)
T ss_dssp CCCCCCCCCSSSEECC---CCCCSSHHHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSC
T ss_pred ccCCCcccCcEEeEEE---eecCCCHHHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCce
Confidence 3467889999999999 9999999999999999999999999999999999999998888899999999999999999
Q ss_pred eeeEEEecCccceee
Q psy2660 131 GVRFKRISDHIISKI 145 (149)
Q Consensus 131 GIrfKRisGd~w~~~ 145 (149)
||+||||+||+|.|-
T Consensus 94 GI~fKRisGd~w~YK 108 (126)
T 1v5s_A 94 GVRFKRISGTSIAFK 108 (126)
T ss_dssp CCEEEEEESCHHHHH
T ss_pred eEEEeeccCchhHHH
Confidence 999999999999983
No 3
>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker, 5'-AMP-activated protein...; AMPK, transferase; HET: AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A* 4eal_A*
Probab=98.92 E-value=4.6e-09 Score=76.25 Aligned_cols=76 Identities=17% Similarity=0.377 Sum_probs=66.7
Q ss_pred eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCc
Q psy2660 64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDH 140 (149)
Q Consensus 64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd 140 (149)
..|.....|..+|.|+|.||.++|.+.|+.|+..++|.+.|.+..+.....+.||+++.|+..-. +=+.|||++|+
T Consensus 6 ~kW~LGIrS~~~P~eiM~eIyraLk~lg~~Wk~~~~Y~lkcR~~~~~~~~~vK~~lQLYkv~~~~-YLLDfq~i~g~ 81 (106)
T 4eai_A 6 AKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRT-YLLDFRSIDDG 81 (106)
T ss_dssp CEEEESEEECSCHHHHHHHHHHHHHHHTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSSSC-EEEEEEECCSS
T ss_pred ccceEcceeCCCHHHHHHHHHHHHHHcCCEEeeCCceEEEEEEcCCCCCceeEEEEEEEEecCCc-EEEEEEeccCC
Confidence 46778889999999999999999999999999999999999987765567899999999996433 44899999995
No 4
>2v8q_A 5'-AMP-activated protein kinase catalytic subunit; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.129.6.2 PDB: 2v92_A* 2v9j_A* 2y94_C*
Probab=98.53 E-value=4.8e-07 Score=69.62 Aligned_cols=79 Identities=18% Similarity=0.392 Sum_probs=65.0
Q ss_pred eeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcccee
Q psy2660 65 TWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISK 144 (149)
Q Consensus 65 ~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~~ 144 (149)
-|-....|..+|.|||.||.|+|...|+.|+..+.|.+.|....+.....|+|||.+.|+.. +.+=+.|||+.|+.|..
T Consensus 4 kWhLGIrSrs~P~eIM~EVyRALk~Lg~eWK~~~pY~IkcRw~~~~~~~~vKm~LQLYkv~~-~~YLLDFk~l~g~~~e~ 82 (157)
T 2v8q_A 4 AWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDEITEA 82 (157)
T ss_dssp EEEESEEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEEECCC----
T ss_pred cceeecccCCCHHHHHHHHHHHHHHcCCEEeeCCCeEEEEEEcCCCCCceEEEEEEEEEecC-CCEEEEEEecCCCcccc
Confidence 45667778889999999999999999999999889999998766555568999999999974 34669999999998863
No 5
>2y8l_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, serine/threonine-protein KI; HET: ADP AMP; 2.50A {Rattus norvegicus} PDB: 2y8q_A* 2ya3_A*
Probab=98.47 E-value=8.2e-07 Score=69.24 Aligned_cols=80 Identities=18% Similarity=0.394 Sum_probs=65.3
Q ss_pred eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCccce
Q psy2660 64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143 (149)
Q Consensus 64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~ 143 (149)
.-|-....|..+|.|||.||.|+|.+.|+.|+..++|.+.|....+-....|+|||-+.|+.. +.+=+.|||+.|+.|.
T Consensus 17 ~kWhLGIrSrs~P~eIM~EVyRALk~Lg~eWK~i~pY~IkcRw~~~~~~~~vKmeLQLYKv~~-~~YLLDFk~l~Gd~~e 95 (173)
T 2y8l_A 17 MAWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDEITE 95 (173)
T ss_dssp CEEEESEEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEEECCC---
T ss_pred ceeeeecccCCCHHHHHHHHHHHHHHcCCEEeeCCCeEEEEEEcCCCCCeeEEEEEEEEEEcC-CCEEEEEEecCCCccc
Confidence 345566778789999999999999999999999999999998866545568999999999974 3466999999999886
Q ss_pred e
Q psy2660 144 K 144 (149)
Q Consensus 144 ~ 144 (149)
-
T Consensus 96 ~ 96 (173)
T 2y8l_A 96 A 96 (173)
T ss_dssp -
T ss_pred c
Confidence 3
No 6
>4eag_A EG:132E8.2 protein; AMPK, transferase; HET: ATP TAM; 2.70A {Drosophila melanogaster}
Probab=98.42 E-value=1.4e-06 Score=65.23 Aligned_cols=77 Identities=13% Similarity=0.281 Sum_probs=64.3
Q ss_pred eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcc
Q psy2660 64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHI 141 (149)
Q Consensus 64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~ 141 (149)
.-|.....|..+|.|||.||.|+|...|+.|+..++|.+.|....+.....+++++...++..- -+=+.||++.||.
T Consensus 6 ~kW~LGIrS~~~P~eIM~EVyrALk~Lg~eWK~~~pY~vkcR~~n~~~~~~vKm~LQLYqv~~~-~YLLDfk~~~~~~ 82 (130)
T 4eag_A 6 AKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINPYHVRVRRQNVKTGKFSKMSLQLYQVDAK-SYLLDFKSLTNDE 82 (130)
T ss_dssp CCEEESBCCCSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEESSSS-CEEEEEEECC---
T ss_pred cceeeeeecCCCHHHHHHHHHHHHHHCCCEEeeCCCEEEEEEecCCCCCceeEEEEEEEEecCC-cEEEEeccCCcch
Confidence 3466778888899999999999999999999999999999987666666789999999998754 3668999999985
No 7
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=98.17 E-value=5.5e-06 Score=71.83 Aligned_cols=81 Identities=17% Similarity=0.394 Sum_probs=65.9
Q ss_pred eeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCccc
Q psy2660 63 RFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHII 142 (149)
Q Consensus 63 k~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w 142 (149)
+-.|-....|...|++||.||.|+|...|++|...+.|.+.|.+..+.....++|++-+.++..-. +=+-|||++|+..
T Consensus 395 ~~~w~lgi~s~~~p~~im~ev~~al~~lg~~Wk~~~~~~i~~r~~~~~~~~~~k~~lqly~~~~~~-~llDf~~~~~~~~ 473 (476)
T 2y94_A 395 KAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRT-YLLDFRSIDDEIL 473 (476)
T ss_dssp CCCEEESEEECSCHHHHHHHHHHHHHTTTCBCCEEETTEEEEEEECTTTCCEEEEEEEEEECSSSC-EEEEEEEECCC--
T ss_pred cceeeecCccCCCHHHHHHHHHHHHHHcCCeeccCCCEEEEEEECCCCCCceEEEEEEEEEecCCc-EEEEeeecCCCcc
Confidence 445666777888899999999999999999999988999999987766667899999999996433 4489999999987
Q ss_pred ee
Q psy2660 143 SK 144 (149)
Q Consensus 143 ~~ 144 (149)
.|
T Consensus 474 ~~ 475 (476)
T 2y94_A 474 EV 475 (476)
T ss_dssp --
T ss_pred cc
Confidence 66
No 8
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Probab=97.82 E-value=1.4e-05 Score=60.18 Aligned_cols=78 Identities=10% Similarity=0.155 Sum_probs=62.0
Q ss_pred eeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeee---------CCEEEEEEeCCCCC-----CcceEEEEEEEeeC
Q psy2660 60 RSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQR---------ERFLLLCVHGDPNT-----DSLVQWEIEVCKLP 125 (149)
Q Consensus 60 R~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~---------~~y~l~C~~~d~~~-----~~~v~fEmEVCkLp 125 (149)
+..|.. ....|...|-|||.||-|+|.+.|+.|+.. |.|.+.|....+.. ...|.|+|.+.++.
T Consensus 9 ~~~kWh--lGIRSrs~P~eIM~EVyrALk~Lg~eWk~~~~~~~~~~~~~y~Ik~R~~~~~~~~~~~~~~vkm~iQLYqv~ 86 (137)
T 2qrd_A 9 RRNKWH--FGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVM 86 (137)
T ss_dssp --CCCE--ESEEEESCHHHHHHHHHHHHHHHTCEECCCCCBTTBCCGGGGEEEEEEECHHHHHTTCCEEEEEEEEEEEEE
T ss_pred ccCccc--cccccCCCHHHHHHHHHHHHHHCCCEEEeccccccccCCCceEEEEEEecCCCccccCCceEEEEEEEEEec
Confidence 444444 455676799999999999999999999987 89999998754321 35799999999997
Q ss_pred CCCCceeeEEEecCc
Q psy2660 126 RLSLNGVRFKRISDH 140 (149)
Q Consensus 126 ~l~l~GIrfKRisGd 140 (149)
. +.+=+.||++.|+
T Consensus 87 ~-~~YLlDFk~~~~~ 100 (137)
T 2qrd_A 87 P-GCFMLDVKSNGYK 100 (137)
T ss_dssp T-TEEEEEEEEEEEE
T ss_pred C-CcEEEEEEecCCc
Confidence 3 4466999999998
No 9
>3t4n_A Carbon catabolite-derepressing protein kinase; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} SCOP: d.129.6.2 PDB: 3tdh_A* 3te5_A* 2qlv_A
Probab=97.44 E-value=0.00041 Score=54.30 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=58.0
Q ss_pred eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeC---CEEEEEEeCCCC---------CCcceEEEEEEEeeCCCCCce
Q psy2660 64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRE---RFLLLCVHGDPN---------TDSLVQWEIEVCKLPRLSLNG 131 (149)
Q Consensus 64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~---~y~l~C~~~d~~---------~~~~v~fEmEVCkLp~l~l~G 131 (149)
.-|.....|..+|.|||.||.|+|...|+.|+..+ .|.+.|.+.... ....|+||+.+.++..- .+=
T Consensus 49 ~kW~LGIrS~~~P~eIM~EVyrALk~Lg~~WKk~~~~~pY~IkcRw~~~~~~~~~~~~~~p~~vKmeLQLYkv~~~-~YL 127 (179)
T 3t4n_A 49 TRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSEEDLWTIKLRWKYDIGNKTNTNEKIPDLMKMVIQLFQIETN-NYL 127 (179)
T ss_dssp CCCEESEEECSCHHHHHHHHHHHHHHHTCEEECCCGGGTTEEEEEECC-----------CCCEEEEEEEEEEEETT-EEE
T ss_pred ceeeeccccCCCHHHHHHHHHHHHHHcCCEEeeCCCCCceEEEEEEeCCCCcccccccCCCceeEEEEEEEEecCC-ceE
Confidence 34556777889999999999999999999999987 999999865321 12469999999999753 344
Q ss_pred eeEEEecC
Q psy2660 132 VRFKRISD 139 (149)
Q Consensus 132 IrfKRisG 139 (149)
+.|| ..|
T Consensus 128 LDfk-~~G 134 (179)
T 3t4n_A 128 VDFK-FDG 134 (179)
T ss_dssp EEEE-EEE
T ss_pred EEEE-ecc
Confidence 6677 666
No 10
>2ehb_D CBL-interacting serine/threonine-protein kinase 2; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana}
Probab=96.59 E-value=0.0054 Score=46.02 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=58.1
Q ss_pred cccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcccee
Q psy2660 70 TTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISK 144 (149)
Q Consensus 70 TTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~~ 144 (149)
-||..+|++|+..|..+....|...+.++ +.+...-...+.+..+.+.+||..+- .+++=|-+|+-+||+..|
T Consensus 38 F~s~~~a~~ii~klEe~a~~lg~~V~kk~-~~vkl~~~~~grkG~l~v~~EVfeva-psl~vVEvrks~GD~lEy 110 (143)
T 2ehb_D 38 FVSRREPSEIIANIEAVANSMGFKSHTRN-FKTRLEGLSSIKAGQLAVVIEIYEVA-PSLFMVDVRKAAGETLEY 110 (143)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTEEEEESS-SEEEEEECCSSGGGCCEEEEEEEEEE-TTEEEEEEEEEESCHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHhcCcEEEEcC-cEEEEEEecCCCcceEEEEEEEEEec-CCEEEEEEEecCCChHHH
Confidence 45889999999999999999999888764 56655433333456799999999996 467779999999998654
No 11
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=95.79 E-value=0.03 Score=40.82 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=53.2
Q ss_pred cccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcccee
Q psy2660 70 TTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISK 144 (149)
Q Consensus 70 TTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~~ 144 (149)
-||..+|++|+..|..+....|...+.+++ . .+.... .+..+.+.+||..+. .+++=|-+|+-+||+..|
T Consensus 36 F~S~~~a~~ii~klEe~a~~lg~~v~kk~~-~-~~~~~g--~kG~l~v~~EVfev~-p~l~vVEvrks~GD~lEy 105 (123)
T 2zfd_B 36 FVSAWTAERVVERLEEIVSAENLTVAKKET-W-GMKIEG--QKGNFAMVVEINQLT-DELVMIEVRKRQRAAASG 105 (123)
T ss_dssp EEESSCHHHHHHHHHHHHHHTTCEEEEEET-T-EEEEEE--GGGTEEEEEEEEECS-SSCEEEEEEEEESCC---
T ss_pred EEeCCCHHHHHHHHHHHHHHCCCEEEEcCC-c-cccccC--CCccEEEEEEEEEec-CCEEEEEEEecCCChHHH
Confidence 458899999999999999999988887643 2 443222 245689999999996 566679999999998765
No 12
>3ost_A Serine/threonine-protein kinase KCC4; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.69A {Saccharomyces cerevisiae} PDB: 3osm_A
Probab=86.65 E-value=1.9 Score=31.85 Aligned_cols=75 Identities=9% Similarity=0.113 Sum_probs=53.5
Q ss_pred eeeeecccCCChHHHHHHHHHHhhh---CCC---ceeeeCCEEEEEEeCCCC--CCcceEEEEEEEeeCCCCC-ceeeEE
Q psy2660 65 TWSMKTTSSRDPNEIRAEIRKVLDA---NNC---DYEQRERFLLLCVHGDPN--TDSLVQWEIEVCKLPRLSL-NGVRFK 135 (149)
Q Consensus 65 ~fsvsTTSsk~P~ei~~EI~rvL~~---~~i---~y~~~~~y~l~C~~~d~~--~~~~v~fEmEVCkLp~l~l-~GIrfK 135 (149)
.|.+..-+..+-.++.+||.+.|.. -|+ .+.. .++.+...-+..+ .=..+.|+|||. |+-++ .=|+|+
T Consensus 24 ~~d~~l~t~v~k~~~~~~L~~LL~~Wk~yGlkdv~~D~-~~~~ItGrvs~~N~L~LRsv~F~i~i~--~~gn~~Slv~f~ 100 (128)
T 3ost_A 24 ILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNI-TNMIITGKLVNDSILFLRSTLFEIMVL--PNGDGRSLIKFN 100 (128)
T ss_dssp ECSCCEEESSCHHHHHHHHHHHHHTCGGGTEEEEEEET-TTTEEEEEECCCCSSSCCCEEEEEEEE--ECSTTCEEEEEE
T ss_pred CccEEEEEecCHHHHHHHHHHHHHHHHHhCccceEecC-CCCEEEEEEccccccccceeEEEEEEe--ecCCceEEEEEE
Confidence 3667777889999999999999985 343 3443 3676666554322 124699999999 66544 449999
Q ss_pred EecCccc
Q psy2660 136 RISDHII 142 (149)
Q Consensus 136 RisGd~w 142 (149)
+.+|.+=
T Consensus 101 q~rGSss 107 (128)
T 3ost_A 101 KKTGSTK 107 (128)
T ss_dssp ESSSCHH
T ss_pred EeeccHH
Confidence 9999863
No 13
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=44.71 E-value=15 Score=22.23 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHhhhCCCceee
Q psy2660 74 RDPNEIRAEIRKVLDANNCDYEQ 96 (149)
Q Consensus 74 k~P~ei~~EI~rvL~~~~i~y~~ 96 (149)
-+.++|+.||-.||+.|.-+|-+
T Consensus 14 ~~~D~lLDeId~vLE~NAeeFV~ 36 (44)
T 3m91_B 14 EETDDLLDEIDDVLEENAEDFVR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHTC-----
T ss_pred hhHHHHHHHHHHHHHHhHHHHHH
Confidence 35689999999999999888764
No 14
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=42.72 E-value=19 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.7
Q ss_pred eeeecccCCChHHHHHHHHHHhhhCCC
Q psy2660 66 WSMKTTSSRDPNEIRAEIRKVLDANNC 92 (149)
Q Consensus 66 fsvsTTSsk~P~ei~~EI~rvL~~~~i 92 (149)
|....+|.++-++.+..++.+|.++|.
T Consensus 2 ~~~~~~s~~s~~e~~~~l~~al~~~Gf 28 (129)
T 1j3m_A 2 TGMRKTLKATLAEARAQVEAALKEEGF 28 (129)
T ss_dssp -CEEEEESSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHCCC
Confidence 556788899999999999999998654
No 15
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.54 E-value=4 Score=28.89 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhhcCccccCCCCccccCCCceecCCCCCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCc
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCD 93 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~ri~vv~~~~~~~~~~~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~ 93 (149)
.-+..=+-|||.||+-||.|.-.... .+..=.+.-+.+++++++.+++.|++
T Consensus 66 ~ef~~D~~li~~Na~~yN~~~s~~~~-------------------------~A~~L~~~~~~~l~~~~~~~~~~~~~ 117 (121)
T 2d9e_A 66 DDFEEDFNLIVSNCLKYNAKDTIFYR-------------------------AAVRLREQGGAVLRQARRQAEKMGSG 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHTSBT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567788999999999987432211 12222234567888888888888765
No 16
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=41.45 E-value=55 Score=25.80 Aligned_cols=43 Identities=16% Similarity=0.385 Sum_probs=37.3
Q ss_pred CCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceee
Q psy2660 54 DDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQ 96 (149)
Q Consensus 54 ~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~ 96 (149)
....-|-...+.+++.+....+++++.++|++++++.|+.++.
T Consensus 243 ~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~~~~~g~~~~i 285 (377)
T 3isz_A 243 SNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEKHNLKYRI 285 (377)
T ss_dssp CSSCCCSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 3456788899999999999999999999999999998887664
No 17
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1
Probab=40.54 E-value=41 Score=27.19 Aligned_cols=43 Identities=14% Similarity=0.410 Sum_probs=37.1
Q ss_pred CCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceee
Q psy2660 54 DDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQ 96 (149)
Q Consensus 54 ~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~ 96 (149)
....-|-...+.+++.+....+++++.++|+++++..++.++.
T Consensus 246 ~~NviP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~ 288 (393)
T 1vgy_A 246 ATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDL 288 (393)
T ss_dssp CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 4456788999999999999999999999999999988776543
No 18
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=40.09 E-value=25 Score=24.47 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=24.4
Q ss_pred eeeeeecccCCChHHHHHHHHHHhhhCCC
Q psy2660 64 FTWSMKTTSSRDPNEIRAEIRKVLDANNC 92 (149)
Q Consensus 64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i 92 (149)
++|-+..+|..+-++.+..|+.+|.++|.
T Consensus 3 ~m~~~~~~s~~s~~e~~~~l~~al~~~Gf 31 (130)
T 1q9u_A 3 AMFHYTVDVSTGMNETIERLEESLKQEGF 31 (130)
T ss_dssp CCSEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred ccEEEEEEcCCCHHHHHHHHHHHHHHCCC
Confidence 45667888999999999999999998543
No 19
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=37.10 E-value=24 Score=29.27 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=23.9
Q ss_pred eeeeeeecccCCChHHHHHHHHHHhhh
Q psy2660 63 RFTWSMKTTSSRDPNEIRAEIRKVLDA 89 (149)
Q Consensus 63 k~~fsvsTTSsk~P~ei~~EI~rvL~~ 89 (149)
||.|+|-|+-+.+|++++.+=.++|.+
T Consensus 227 kfif~VET~Gsi~Peeav~~A~kIL~~ 253 (318)
T 1twf_C 227 TFYMNVESVGSIPVDQVVVRGIDTLQK 253 (318)
T ss_dssp CEEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCcCHHHHHHHHHHHHHH
Confidence 799999999999999999877777765
No 20
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A
Probab=36.66 E-value=44 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=37.2
Q ss_pred CCCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCcee
Q psy2660 52 VNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYE 95 (149)
Q Consensus 52 ~~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~ 95 (149)
+.....-|-...+.+++.+....+++++.++|+++++..++.++
T Consensus 234 G~~~NviP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~ 277 (369)
T 2f7v_A 234 GIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPAAAHFE 277 (369)
T ss_dssp CSSTTSCCSEEEEEEEEECCTTCCHHHHHHHHHHTCSSCCSEEE
T ss_pred CCCCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHHHHhcCceE
Confidence 34456788899999999999999999999999999988765554
No 21
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}
Probab=35.26 E-value=48 Score=26.35 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=37.0
Q ss_pred CCCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhh---CCCceee
Q psy2660 52 VNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDA---NNCDYEQ 96 (149)
Q Consensus 52 ~~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~---~~i~y~~ 96 (149)
+.....-|-...+.+++.+.+..+++++.++|++++++ .++.++.
T Consensus 239 G~~~NvIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~g~~~~~ 286 (369)
T 3tx8_A 239 GVANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWAV 286 (369)
T ss_dssp CSBTTBCCSEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSTTEEEEE
T ss_pred CCCCccccCcEEEEEEEecCCCCCHHHHHHHHHHHHHhcccCCeEEEE
Confidence 34556778899999999999999999999999999987 3555443
No 22
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=32.61 E-value=1.1e+02 Score=23.75 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHhhhCCCceee---eCCEEEEEEeCCC------------------CCCcceEEEEE
Q psy2660 73 SRDPNEIRAEIRKVLDANNCDYEQ---RERFLLLCVHGDP------------------NTDSLVQWEIE 120 (149)
Q Consensus 73 sk~P~ei~~EI~rvL~~~~i~y~~---~~~y~l~C~~~d~------------------~~~~~v~fEmE 120 (149)
+++.++++.+=+.-|++.+|.|++ .+++.|. ..+.. .|+..|+|-+|
T Consensus 128 ~~s~~~l~~~Ae~GL~~~ni~yr~i~~~~~vtFi-I~~~L~D~~l~~l~~fi~~F~~~WG~~yIqFsI~ 195 (197)
T 3gr0_A 128 LMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFV-IQGALDDVEILRARQFVDSYYRTWGGRYVQFAIE 195 (197)
T ss_dssp EECHHHHHHHHHHHHHHTTCCEEEEEETTEEEEE-ECSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred EcCHHHHHHHHHhhHHhcCCceEEEecCCeEEEE-EcCCCCHHHHHHHHHHHHHHHHhhCccEEEEEEe
Confidence 479999999999999999999988 3455544 44432 34567888776
No 23
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=27.80 E-value=13 Score=26.14 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhcCccccCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPM 37 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~ 37 (149)
-+..=+-|||.||+-||.|.
T Consensus 68 ef~~Dv~Li~~Na~~yN~~~ 87 (117)
T 2i7k_A 68 ELKDNFKLMCTNAMIYNKPE 87 (117)
T ss_dssp HHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 45667788999999999875
No 24
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=26.96 E-value=63 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred eecccCCChHHHH---HHHHHHhhhCCCceeee
Q psy2660 68 MKTTSSRDPNEIR---AEIRKVLDANNCDYEQR 97 (149)
Q Consensus 68 vsTTSsk~P~ei~---~EI~rvL~~~~i~y~~~ 97 (149)
|-|||+.+.-++. ..+++.|+++||+|+..
T Consensus 4 vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEi 36 (121)
T 1u6t_A 4 VYIASSSGSTAIKKKQQDVLGFLEANKIGFEEK 36 (121)
T ss_dssp EEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEecCCCCCccchHHHHHHHHHHHHCCCceEEE
Confidence 3456666665555 47889999999999874
No 25
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=26.78 E-value=12 Score=26.08 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhcCccccCCCC
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~r 38 (149)
.-+..=|-|||.||+-||.|.-
T Consensus 73 ~~f~~D~~li~~Na~~yN~~~s 94 (120)
T 3jvl_A 73 QEFGADVRLMFSNCYKYNPPDH 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 3456678899999999998754
No 26
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=26.70 E-value=10 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=|-|||.||.-||.|.-
T Consensus 76 ~f~~D~~li~~Na~~yN~~~s 96 (116)
T 3nxb_A 76 EFVNDMKTMFRNCRKYNGESS 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 455667889999999998753
No 27
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=26.35 E-value=10 Score=26.68 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=+-|||.||+-||.|.-
T Consensus 75 ~f~~D~~li~~Na~~yN~~~s 95 (126)
T 3mqm_A 75 AFDADMLKVFRNAEKYYGRKS 95 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 355667899999999998753
No 28
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=26.31 E-value=12 Score=25.95 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.5
Q ss_pred hHHHHHHHHhhcCccccCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPM 37 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~ 37 (149)
-+..=|-|||.||+-||.|.
T Consensus 73 ~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 73 TFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp HHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 45667788999999999875
No 29
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=26.30 E-value=12 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=+-|||.||+-||.|.-
T Consensus 71 ~f~~D~~li~~Na~~yN~~~s 91 (116)
T 3iu5_A 71 LLTADFQLLFNNAKSYYKPDS 91 (116)
T ss_dssp HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 455667889999999998754
No 30
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP: d.15.1.8 PDB: 2d5g_A
Probab=25.97 E-value=1.1e+02 Score=20.59 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEE
Q psy2660 78 EIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVC 122 (149)
Q Consensus 78 ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVC 122 (149)
--+.+.+++|.+. |.|.+.++..++--+..+.|| ||.
T Consensus 27 iTL~dFK~~l~k~-------g~yrffFK~~~~d~~~~~V~e-EI~ 63 (84)
T 1wsp_A 27 VTLGQFKELLTKK-------GSYRYYFKKVSDEFDCGVVFE-EVR 63 (84)
T ss_dssp CBHHHHHHHCCSC-------SCEEEEEEEECTTSTTSEEEE-EEC
T ss_pred ccHHHHHHhcCCC-------CceEEEEeecCccccCCceEE-EEc
Confidence 3478999999653 457677777665333357777 665
No 31
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=25.76 E-value=13 Score=26.23 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=+-|||.||.-||.|.-
T Consensus 73 ~f~~D~~li~~Na~~yN~~~s 93 (123)
T 3hme_A 73 EFKADFKLMCDNAMTYNRPDT 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 456667889999999998754
No 32
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=25.64 E-value=13 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.4
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=+-|||.||+-||.|.-
T Consensus 81 ~f~~D~~li~~Na~~yN~~~s 101 (124)
T 3mb4_A 81 SMVEDFVMMFNNACTYNEPES 101 (124)
T ss_dssp HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 345667789999999998653
No 33
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=25.56 E-value=17 Score=25.79 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=17.9
Q ss_pred hhHHHHHHHHhhcCccccCCCC
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~r 38 (149)
.-+.+=|-|||.||+-||.|.-
T Consensus 77 ~~f~~Dv~Li~~Na~~yN~~~s 98 (129)
T 2grc_A 77 NDLEKDVMLLCQNAQTFNLEGS 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 3466788899999999998753
No 34
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=24.30 E-value=60 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=26.4
Q ss_pred eEeeeeeeecccCCChHHHHHHHHHHhhhC
Q psy2660 61 SLRFTWSMKTTSSRDPNEIRAEIRKVLDAN 90 (149)
Q Consensus 61 ~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~ 90 (149)
.=|+.|++-|+.+.+|++++.+=.++|..+
T Consensus 198 ~d~li~eIeT~Gsi~P~eal~~A~~iL~~~ 227 (235)
T 1bdf_A 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 (235)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 347999999999999999999988888753
No 35
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=23.92 E-value=14 Score=26.20 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.0
Q ss_pred hHHHHHHHHhhcCccccCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPM 37 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~ 37 (149)
-+..=+-|||.||+-||.|.
T Consensus 70 ~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 70 DYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 35566788999999999764
No 36
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=23.76 E-value=54 Score=25.09 Aligned_cols=22 Identities=14% Similarity=0.136 Sum_probs=19.2
Q ss_pred cCCChHHHHHHHHHHhhhCCCc
Q psy2660 72 SSRDPNEIRAEIRKVLDANNCD 93 (149)
Q Consensus 72 Ssk~P~ei~~EI~rvL~~~~i~ 93 (149)
.+.++++|.++|.++|++.|+.
T Consensus 196 g~~~~eeV~~~I~~~l~k~G~k 217 (217)
T 3umf_A 196 ASGTVDAIFDKVNHELQKFGVK 217 (217)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCC
Confidence 4579999999999999998874
No 37
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=23.63 E-value=15 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=|-|||.||.-||.|.-
T Consensus 74 ~f~~D~~li~~Na~~yN~~~s 94 (119)
T 3p1f_A 74 QYVDDVWLMFNNAWLYNRKTS 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 456678899999999997653
No 38
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=23.41 E-value=15 Score=25.64 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=|-|||.||+-||.|.-
T Consensus 74 ~f~~D~~li~~Na~~yN~~~s 94 (120)
T 3ljw_A 74 AMAKDIDLLAKNAKTYNEPGS 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 456667889999999998754
No 39
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=23.41 E-value=51 Score=23.81 Aligned_cols=29 Identities=7% Similarity=0.241 Sum_probs=21.9
Q ss_pred CCCCCCcceEEEEEEEeeCCCCCceeeEE
Q psy2660 107 GDPNTDSLVQWEIEVCKLPRLSLNGVRFK 135 (149)
Q Consensus 107 ~d~~~~~~v~fEmEVCkLp~l~l~GIrfK 135 (149)
..++..+....+++|.++|...+.|++.+
T Consensus 10 ~~~~~~~~~~m~~~I~~~~~f~vvGi~~r 38 (170)
T 3gk6_A 10 HSSGRENLYFQGMNISEINGFEVTGFVVR 38 (170)
T ss_dssp -----CCCEEEEEEEEEECCEEEEEEEEE
T ss_pred ccccccccCCCCcEEEEECCEEEEEEEEE
Confidence 34445678899999999999999999876
No 40
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=22.70 E-value=81 Score=23.52 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHhhhCCCceeee-C---CEEEEE
Q psy2660 75 DPNEIRAEIRKVLDANNCDYEQR-E---RFLLLC 104 (149)
Q Consensus 75 ~P~ei~~EI~rvL~~~~i~y~~~-~---~y~l~C 104 (149)
++++ ..+|...|+++||+|+.. + |+.+.-
T Consensus 8 ~~~d-a~~i~~~L~~~~I~y~~~~~~~~g~~I~V 40 (170)
T 2y9j_Y 8 DQEQ-ANEVIAVLQMHNIEANKIDSGKLGYSITV 40 (170)
T ss_dssp CHHH-HHHHHHHHHHTTCCEEEEECTTSCEEEEE
T ss_pred CHHH-HHHHHHHHHHcCCCEEEecCCCCCeEEEE
Confidence 4444 689999999999999984 3 576665
No 41
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=22.20 E-value=16 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.2
Q ss_pred hHHHHHHHHhhcCccccCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPM 37 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~ 37 (149)
-+..=|-|||.||.-||.|.
T Consensus 73 ~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 73 EFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHCCCC
Confidence 35667788999999999765
No 42
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=22.01 E-value=1.4e+02 Score=22.00 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=37.6
Q ss_pred eeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceE-EEEE-EEeeCCCCCceeeEEEecCc
Q psy2660 66 WSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQ-WEIE-VCKLPRLSLNGVRFKRISDH 140 (149)
Q Consensus 66 fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~-fEmE-VCkLp~l~l~GIrfKRisGd 140 (149)
|..-+=...++++||.||...+.+.-= .|+ +..--|+..+ ++ =-|+ |++-|. +-.|.+..|..++
T Consensus 51 WkLPmF~~td~~~Vl~Ele~C~k~~p~------~YV-RliGfD~~~~--~qs~~~sfIV~RP~-~~p~~~~~r~e~~ 117 (139)
T 1bxn_I 51 FGLPMFDLRDAAGILMEINNARNTFPN------HYI-RVTAFDSTHT--VESVVMSFIVNRPA-DEPGFRLVRQEEP 117 (139)
T ss_dssp SSSCBTTCCCHHHHHHHHHHHHHHCSS------SEE-EEEEECTTTC--CEEEEEECCCCGGG-SCSSCEEEEEECS
T ss_pred cCCCCcCCCCHHHHHHHHHHHHHHCCC------CeE-EEEEEeCCCc--eEEEEEEEEEECCC-CCCCcEEEeeccC
Confidence 334466778999999999999987433 332 2222243222 22 0133 666665 4477777775443
No 43
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=21.69 E-value=13 Score=25.45 Aligned_cols=17 Identities=35% Similarity=1.148 Sum_probs=14.0
Q ss_pred HhhcCccccCCCCccccCC
Q psy2660 26 VWANCKYYQGPMAMEPVPK 44 (149)
Q Consensus 26 iW~~s~yY~~p~ri~vv~~ 44 (149)
-|+.++|| ||+|+=+..
T Consensus 31 rW~D~~yY--PAkI~sV~~ 47 (85)
T 3qii_A 31 CWSDCRFY--PAKVTAVNK 47 (85)
T ss_dssp ECTTSCEE--EEEEEEECT
T ss_pred EeCCCCEe--eEEEEEECC
Confidence 49999999 999986644
No 44
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=21.69 E-value=20 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhcCccccCCCC
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~r 38 (149)
.-+..=|-|||.||+-||.|.-
T Consensus 82 ~ef~~Dv~Lif~Na~~yN~~~s 103 (166)
T 3fkm_X 82 SEFVKDVQLIFDNCSLYNTSNS 103 (166)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 3456677899999999998754
No 45
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.42 E-value=30 Score=28.52 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=22.8
Q ss_pred EeeeeeeecccCCChHHHHHHHHHHhhh
Q psy2660 62 LRFTWSMKTTSSRDPNEIRAEIRKVLDA 89 (149)
Q Consensus 62 lk~~fsvsTTSsk~P~ei~~EI~rvL~~ 89 (149)
=||.|+|.|+-+.+|++++.+=.++|..
T Consensus 227 dkfif~VET~Gsl~p~eiv~~A~~iL~~ 254 (297)
T 3h0g_C 227 RRFYMDVESVGSIPPNEIMVQGLRILQE 254 (297)
T ss_dssp CCEEEEEEBCSSSCTTTTTHHHHHHHHH
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999998865555543
No 46
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.23 E-value=23 Score=24.80 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+.+=|-|||.||+-||.|.-
T Consensus 79 ~f~~D~~li~~Na~~yN~~~s 99 (123)
T 2dat_A 79 DLEKDVMLLCHNAQTFNLEGS 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 466778899999999998754
No 47
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=21.13 E-value=80 Score=26.67 Aligned_cols=38 Identities=3% Similarity=0.013 Sum_probs=33.5
Q ss_pred CeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceee
Q psy2660 59 PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQ 96 (149)
Q Consensus 59 PR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~ 96 (149)
|-...+.+++......+.+++.++|+++++..++.++.
T Consensus 363 P~~a~~~idiR~~~~~~~~~v~~~i~~~~~~~g~~~~i 400 (492)
T 3khx_A 363 ENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKL 400 (492)
T ss_dssp TTCCEEEEEEEECTTCCHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCEEEEEEEeeCCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence 66788899999999999999999999999987877765
No 48
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=21.01 E-value=23 Score=25.55 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.5
Q ss_pred hhHHHHHHHHhhcCccccCCCC
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~r 38 (149)
.-+.+=|-|||.||+-||.+.-
T Consensus 90 ~ef~~D~~li~~Na~~yN~~~s 111 (150)
T 3tlp_A 90 EGMIEDMKLMFRNARHYNEEGS 111 (150)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 3456778899999999998743
No 49
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=20.96 E-value=23 Score=24.98 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhcCccccCCCC
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~r 38 (149)
.-+..=+-|||.||.-||.+.-
T Consensus 82 ~ef~~D~~li~~Na~~yN~~~s 103 (127)
T 2oss_A 82 QECIQDFNTMFTNCYIYNKPGD 103 (127)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 3456778899999999998753
No 50
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=20.94 E-value=18 Score=26.54 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhcCccccCCCC
Q psy2660 18 PMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 18 pl~h~v~LiW~~s~yY~~p~r 38 (149)
-+..=|-|||.||+-||.+.-
T Consensus 94 ef~~Dv~Lif~Na~~YN~~~s 114 (154)
T 4alg_A 94 ECMQDFNTMFTNCYIYNKPTD 114 (154)
T ss_dssp HHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 355667889999999998754
No 51
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=20.85 E-value=24 Score=25.07 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhhcCccccCCCC
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~r 38 (149)
.-+..=|-|||.||+-||.|.-
T Consensus 86 ~ef~~Dv~li~~Na~~yN~~~s 107 (130)
T 2ouo_A 86 QEFGADVRLMFSNCYKYNPPDH 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 3466778899999999998753
No 52
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=20.38 E-value=24 Score=24.13 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.8
Q ss_pred hhHHHHHHHHhhcCccccCCCC
Q psy2660 17 SPMMHTVCLVWANCKYYQGPMA 38 (149)
Q Consensus 17 ~pl~h~v~LiW~~s~yY~~p~r 38 (149)
.-+.+=|-|||.||+-||.|..
T Consensus 66 ~~f~~Dv~li~~Na~~yN~~~s 87 (112)
T 3d7c_A 66 KLFVADLQRVIANCREYNPPDS 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 3466778899999999998753
No 53
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=20.27 E-value=88 Score=25.75 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=32.0
Q ss_pred Cee-EeeeeeeecccCCChHHHHHHHHHHhhhCCCceeee
Q psy2660 59 PRS-LRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQR 97 (149)
Q Consensus 59 PR~-lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~ 97 (149)
|-. ..+.+++.+....+++++.++|+++++. |+.++..
T Consensus 339 p~~~a~~~~diR~~~~~~~~~i~~~i~~~~~~-g~~v~~~ 377 (470)
T 1lfw_A 339 HAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG-ILDVTYN 377 (470)
T ss_dssp TTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT-TEEEECS
T ss_pred CCceEEEEEEEecCCCCCHHHHHHHHHHHhcC-CeEEEEE
Confidence 456 7888899999999999999999999988 7776553
No 54
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}
Probab=20.23 E-value=1.6e+02 Score=24.48 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=36.3
Q ss_pred CCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhh---CCCceee
Q psy2660 53 NDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDA---NNCDYEQ 96 (149)
Q Consensus 53 ~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~---~~i~y~~ 96 (149)
+....-|-...+..++.+.+..+++++.++|++.++. .+++++.
T Consensus 325 ~a~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~g~~v~v 371 (472)
T 3pfe_A 325 DAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDF 371 (472)
T ss_dssp TCCSCBCSEEEEEEEEEECTTCCHHHHHHHHHHHHHSSCGGGCEEEE
T ss_pred CCCCEeCCccEEEEEeecCCCCCHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 4456678889999999999999999999999999986 4555543
No 55
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=20.14 E-value=1.9e+02 Score=22.81 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHhhhCCCceee---eCCEEEEEEeCCC------------------CCCcceEEEEE
Q psy2660 73 SRDPNEIRAEIRKVLDANNCDYEQ---RERFLLLCVHGDP------------------NTDSLVQWEIE 120 (149)
Q Consensus 73 sk~P~ei~~EI~rvL~~~~i~y~~---~~~y~l~C~~~d~------------------~~~~~v~fEmE 120 (149)
.++.++++.+=+.-|++.+|.|++ .+++.|. ..+.. .|+..|+|-+|
T Consensus 128 ~~s~~~l~~~Ae~GL~~~ni~yr~i~~~~~vtFi-I~~~L~D~~l~~l~~fi~~f~~~WG~~~IqFsI~ 195 (227)
T 3gr1_A 128 LMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFV-IQGALDDVEILRARQFVDSYYRTWGGRYVQFAIE 195 (227)
T ss_dssp EECHHHHHHHHHHHHHHTTCCEEEEEETTEEEEE-ECSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred EcCHHHHHHHHHhhHHhcCCceEEEecCCeEEEE-EcCCCCHHHHHHHHHHHHHHHHHhCccEEEEEEE
Confidence 478999999999999999999988 3445544 44432 34678999887
No 56
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}
Probab=20.07 E-value=63 Score=27.36 Aligned_cols=38 Identities=5% Similarity=0.125 Sum_probs=31.7
Q ss_pred eEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeC
Q psy2660 61 SLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRE 98 (149)
Q Consensus 61 ~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~ 98 (149)
.++..+++..-...+++++.+.|++.++..|+.++..+
T Consensus 361 ~~~~~~~~R~~~~~~~~~i~~~l~~~~~~~g~~~~~~~ 398 (490)
T 3mru_A 361 KVTVLCLIRSLIDSGRSQVEGMLQSVAELAGAQIEFSG 398 (490)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEEcCCCCchHHHHHHHHHHHHHHHcCCeEEecC
Confidence 46777777777777899999999999999999987753
Done!