RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2660
(149 letters)
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1)
domain, transferase, lipid binding membrane association;
1.70A {Homo sapiens} PDB: 1ul7_A
Length = 120
Score = 125 bits (315), Expect = 3e-38
Identities = 70/86 (81%), Positives = 74/86 (86%)
Query: 53 NDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTD 112
KPRSLRFTWSMKTTSS DPN++ EIRKVLDANNCDYEQ+ERFLL CVHGD D
Sbjct: 16 EGKDSKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQD 75
Query: 113 SLVQWEIEVCKLPRLSLNGVRFKRIS 138
SLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 76 SLVQWEMEVCKLPRLSLNGVRFKRIS 101
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL
motif, MARK3, phosphorylation, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Length = 126
Score = 116 bits (292), Expect = 8e-35
Identities = 54/86 (62%), Positives = 62/86 (72%), Gaps = 3/86 (3%)
Query: 53 NDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTD 112
N D P + + SS ++ EIRKVL ANNCDYEQRERFLL CVHGD + +
Sbjct: 19 NKDYDIPTTENLYFQG---SSGSSGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAE 75
Query: 113 SLVQWEIEVCKLPRLSLNGVRFKRIS 138
+LVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 76 NLVQWEMEVCKLPRLSLNGVRFKRIS 101
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 40.5 bits (95), Expect = 7e-05
Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 34 QGPMAMEPVPKHNVVSNAVNDDQVKPRSL-RFTWSMKTTSSRDPNEIRAEIRKVLDANNC 92
+ P + P+ + +N + K + + + W + S PN+I AE+ + + +
Sbjct: 365 RVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDY 424
Query: 93 DYEQRERFLLLCVHGDPNTDSLVQWEIEVCKL-PRLSLNGVRFKRISD 139
+++ + L +P T + + +++ ++ R L + F+ I D
Sbjct: 425 EWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYL--LDFRSIDD 470
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A
{Xanthomonas campestris} PDB: 2f8h_A
Length = 369
Score = 31.1 bits (71), Expect = 0.11
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 44 KHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLL 103
K N++ + + + S D + + A D +E+ R L
Sbjct: 236 KANMI----------APAAELRFGFRPLPSMDVDGLLATFAGFADPAAAHFEETFRGPSL 285
Query: 104 CVHGDPNTDSLVQWEIEVCKL 124
+ +V
Sbjct: 286 PSGDIARAEERRLAARDVADA 306
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
peptidase, peptidase family M20 structural genomics;
2.31A {Bacteroides thetaiotaomicron vpi-5482}
Length = 356
Score = 30.7 bits (70), Expect = 0.14
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 41 PVPKHNVVS----NAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQ 96
K +V N V P F +++ ++ AEIRK + +
Sbjct: 221 GPVKMSVTVINAGTQHN---VVPDKCTFVVDIRSNELYSNEDLFAEIRKHIACDAKARSF 277
Query: 97 R 97
R
Sbjct: 278 R 278
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 30.4 bits (69), Expect = 0.16
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 62 LRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCV 105
LR W M+T + +E ++++L+ +E + ++ V
Sbjct: 22 LRQHWRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSV 65
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic
metallopeptidase, peptidase family M20/M25/M40,
structural genomics; HET: MSE PGE PG4; 1.60A
{Desulfovibrio desulfuricans subsp}
Length = 364
Score = 29.1 bits (66), Expect = 0.50
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 50 NAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDA 89
+ N P ++++ T DP + +IRK +
Sbjct: 236 ESTN---KVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG 272
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 27.2 bits (60), Expect = 2.3
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 33 YQGPMAMEPVPKHNVVS--NAVNDDQVKPRSLRFTWSMKTTSSRD--------PNEIRAE 82
YQ + HN+ AV+ S+ S + + D P + +
Sbjct: 568 YQEILGN----MHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQ 623
Query: 83 IRKVLDANNCDYEQRERFL 101
R + + D E +++FL
Sbjct: 624 FRDQVKKTDLDAELQQQFL 642
>2v8q_A 5'-AMP-activated protein kinase catalytic subunit; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.129.6.2 PDB: 2v92_A* 2v9j_A* 2y94_C*
Length = 157
Score = 26.7 bits (58), Expect = 2.7
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 66 WSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLP 125
W + S PN+I AE+ + + + +++ + L +P T + + +++ ++
Sbjct: 5 WHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVD 64
Query: 126 RLSLNGVRFKRISDHIIS 143
+ + F+ I D I
Sbjct: 65 SRTYL-LDFRSIDDEITE 81
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural
protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Length = 227
Score = 26.1 bits (57), Expect = 5.2
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 8 DFNEMEPFLSPMMHTVCLVWANCKYY-----QGPMAMEPVPKHNV 47
F+ M PFL VC + P+ M PV + ++
Sbjct: 55 RFSTM-PFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDI 98
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 25.6 bits (57), Expect = 7.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 69 KTTSSRDPNEIRAEIRKVLDANN 91
S +P + +R V + N
Sbjct: 147 IPVSKANPEVVEGTVRAVKEINK 169
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class
fold, transferas; HET: SAM; 1.40A {Methanocaldococcus
jannaschii} PDB: 3ai9_X*
Length = 211
Score = 25.0 bits (54), Expect = 9.2
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 59 PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNC-----DYEQRERFLLLCVHGDPNTDS 113
P ++F S S D I I+K L + + + V +
Sbjct: 69 PVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLGFRNL 128
Query: 114 LVQWEIEVCKLPRLSLNGVRFKRISDHIISKILS 147
+++ E + L +NG + + I+
Sbjct: 129 VLEKLEEGKNIYYLHMNGEDVENVDIENPVFIIG 162
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 25.3 bits (56), Expect = 9.4
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 69 KTTSSRDPNEIRAEIRKVLDANN 91
S P I + V N
Sbjct: 153 IPVSKAKPEVITNTVELVKKVNP 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.416
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,271,050
Number of extensions: 117441
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 19
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)