RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2660
         (149 letters)



>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 102

 Score =  128 bits (323), Expect = 3e-40
 Identities = 63/81 (77%), Positives = 70/81 (86%)

Query: 58  KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
              S RFTWSMKTTSS DP+++  EIRKVL ANNCDYEQRERFLL CVHGD + ++LVQW
Sbjct: 3   SGSSGRFTWSMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQW 62

Query: 118 EIEVCKLPRLSLNGVRFKRIS 138
           E+EVCKLPRLSLNGVRFKRIS
Sbjct: 63  EMEVCKLPRLSLNGVRFKRIS 83


>d2i06a1 e.2.1.1 (A:5-309) Replication terminator protein (Tus)
           {Escherichia coli [TaxId: 562]}
          Length = 305

 Score = 27.5 bits (61), Expect = 0.52
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 59  PRSLRFTWSMKTTSSR-DPNEIRAEIRKVLDANNCDYE 95
           P +LRF W+ K        +E+ A++ K L +      
Sbjct: 161 PATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAP 198


>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
           catalytic subunit alpha-1, AMPK1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 153

 Score = 25.7 bits (56), Expect = 2.0
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 66  WSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKL- 124
           W +   S   PN+I AE+ + +   + +++    + L     +P T +  +  +++ ++ 
Sbjct: 1   WHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVD 60

Query: 125 PRLSLNGVRFKRISD 139
            R  L  + F+ I D
Sbjct: 61  SRTYL--LDFRSIDD 73


>d1eb6a_ d.92.1.12 (A:) Fungal zinc peptidase {Aspergillus oryzae,
           deuterolysin [TaxId: 5062]}
          Length = 177

 Score = 24.9 bits (54), Expect = 3.5
 Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 2/55 (3%)

Query: 59  PRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDS 113
               +F    KTT  +    +   +R V  A              C       + 
Sbjct: 35  GDESKFEEYFKTTDQQTRTTVAERLRAV--AKEAGSTSGGSTTYHCNDPYGYCEP 87


>d1mtyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
           subunit {Methylococcus capsulatus [TaxId: 414]}
          Length = 162

 Score = 24.5 bits (53), Expect = 5.2
 Identities = 5/27 (18%), Positives = 9/27 (33%)

Query: 69  KTTSSRDPNEIRAEIRKVLDANNCDYE 95
           KT    D   +       ++A    +E
Sbjct: 77  KTAFGEDAKSVLDGTVAKMNAAKDKWE 103


>d1mhyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
           subunit {Methylosinus trichosporium [TaxId: 426]}
          Length = 167

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 69  KTTSSRDPNEIRAEIRKVLDANNCDYE 95
           K T+  D   + A     + A    YE
Sbjct: 80  KATTGEDAAAVEATWIAKIKAAKSKYE 106


>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
           chain {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 597

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 63  RFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYE 95
           R     +  + R+  ++  E R V      D+ 
Sbjct: 501 RAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFW 533


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 570,961
Number of extensions: 24100
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)