BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2667
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex
With Lipoyl-Amp
pdb|3A7U|A Chain A, Crystal Structure Of The Bovine Lipoyltransferase In Its
Unliganded Form
Length = 347
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 119/204 (58%), Gaps = 44/204 (21%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
+ S S++++ NLA+EDW++ + + V+ LWRN+P VVIGRHQNPWQE NL ++ +E
Sbjct: 7 ILQSISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREE 66
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLER-EWNIQTEINTRE 173
G+++ARR SGGGTVYHD GN+N+TFFT +++Y+R NL+++ R L+ ++ + R
Sbjct: 67 GVKLARRRSGGGTVYHDMGNINLTFFTTKKKYDRMENLKLVVRALKAVHPHLDVQATKRF 126
Query: 174 DIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKL 233
D++ DG++ KISGTA+K+
Sbjct: 127 DLLLDGQF-------------------------------------------KISGTASKI 143
Query: 234 GRPSSYHHCTLLVNVNKSRLSQSL 257
GR ++YHHCTLL + + LS L
Sbjct: 144 GRNAAYHHCTLLCGTDGTFLSSLL 167
>pdb|3A7A|A Chain A, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7A|C Chain C, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7R|A Chain A, Crystal Structure Of E. Coli Lipoate-Protein Ligase A In
Complex With Lipoyl-Amp
Length = 337
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 42/204 (20%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
+ IS S + + NLA+E+ +++ T V+ LWRN VVIGR QNPW+E N + ++
Sbjct: 5 LLISDSYDPWFNLAVEECIFRQMPAT-QRVLFLWRNADTVVIGRAQNPWKECNTRRMEED 63
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTRED 174
+ +ARR+SGGG V+HD GN TF + Y++ + I+ L + E + R D
Sbjct: 64 NVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNALN-ALGVSAEASGRND 122
Query: 175 IVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLG 234
+V +T+E G K+SG+A +
Sbjct: 123 LVV----------------------KTVE------------------GDRKVSGSAYRET 142
Query: 235 RPSSYHHCTLLVNVNKSRLSQSLH 258
+ +HH TLL+N + SRL+ L+
Sbjct: 143 KDRGFHHGTLLLNADLSRLANYLN 166
>pdb|1X2G|A Chain A, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2G|B Chain B, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2G|C Chain C, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2H|A Chain A, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
pdb|1X2H|B Chain B, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
pdb|1X2H|C Chain C, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
Length = 337
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 42/204 (20%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
+ IS S + + NLA+E+ +++ T V+ LWRN VVIGR QNPW+E N ++
Sbjct: 5 LLISDSYDPWFNLAVEECIFRQXPAT-QRVLFLWRNADTVVIGRAQNPWKECNTRRXEED 63
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTRED 174
+ +ARR+SGGG V+HD GN TF + Y++ + I+ L + E + R D
Sbjct: 64 NVRLARRSSGGGAVFHDLGNTCFTFXAGKPEYDKTISTSIVLNALN-ALGVSAEASGRND 122
Query: 175 IVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLG 234
+V +T+E G K+SG+A +
Sbjct: 123 LVV----------------------KTVE------------------GDRKVSGSAYRET 142
Query: 235 RPSSYHHCTLLVNVNKSRLSQSLH 258
+ +HH TLL+N + SRL+ L+
Sbjct: 143 KDRGFHHGTLLLNADLSRLANYLN 166
>pdb|1VQZ|A Chain A, Crystal Structure Of A Putative Lipoate-Protein Ligase A
(Sp_1160) From Streptococcus Pneumoniae Tigr4 At 1.99 A
Resolution
Length = 341
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 43/201 (21%)
Query: 57 ISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGI 116
I+ S++ N+ALE++ +K+ + LLW N P +++GRHQN +E N + + GI
Sbjct: 17 INHSNDTAFNIALEEYAFKHL-LDEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGI 75
Query: 117 EIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIV 176
E+ RR SGGG VYHD NLN T IIS+ E +
Sbjct: 76 EVVRRISGGGAVYHDLNNLNYT---------------IISKEDENK-------------- 106
Query: 177 YDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRP 236
++++ + TL + ++ E R D+ DGK K G A
Sbjct: 107 -----------AFDFKSFSTPVINTLA-QLGVKAEFTGRNDLEIDGK-KFCGNAQAYING 153
Query: 237 SSYHHCTLLVNVNKSRLSQSL 257
HH LL +V+ S L+ +L
Sbjct: 154 RIXHHGCLLFDVDLSVLANAL 174
>pdb|3R07|A Chain A, Structural Analysis Of An Archaeal Lipoylation System. A
Bi-Partite Lipoate Protein Ligase And Its E2 Lipoyl
Domain From Thermoplasma Acidophilum
Length = 285
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 103/215 (47%), Gaps = 32/215 (14%)
Query: 44 VHNDETKIQKSVFISQS-SNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNP 102
+ +D+ ++ + + ++ N +LA ++ +Y++F + + ++ +R++ V+IG Q
Sbjct: 17 IDDDDKHMEGRLLLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVA 76
Query: 103 WQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLERE 162
+E +L + GI +ARR +GGG VYHD G+LN + ++++I S + R
Sbjct: 77 EEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRS------SDDMDITS--MFRT 128
Query: 163 WNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDG 222
N + +N+ + D + P ++ ++ +N + DI+ G
Sbjct: 129 MN-EAVVNSLRILGLDAR-----PGELN----------------DVSIPVNKKTDIMA-G 165
Query: 223 KYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 257
+ KI G A + + + H +LV+ + LS L
Sbjct: 166 EKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVL 200
>pdb|2ART|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A Bound With
Lipoyl-Amp
pdb|2ARU|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A Bound With
Atp
pdb|2C7I|A Chain A, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C7I|B Chain B, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C7I|C Chain C, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C7I|D Chain D, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C8M|A Chain A, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
pdb|2C8M|B Chain B, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
pdb|2C8M|C Chain C, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
pdb|2C8M|D Chain D, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
Length = 262
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
+ + N +LA ++ +Y++F + + ++ +R++ V+IG Q +E +L +
Sbjct: 6 LLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKN 65
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTRED 174
GI +ARR +GGG VYHD G+LN + ++++I S + R N + +N+
Sbjct: 66 GIMLARRYTGGGAVYHDLGDLNFSVVRS------SDDMDITS--MFRTMN-EAVVNSLRI 116
Query: 175 IVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLG 234
+ D + P ++ ++ +N + DI+ G+ KI G A +
Sbjct: 117 LGLDAR-----PGELN----------------DVSIPVNKKTDIMA-GEKKIMGAAGAMR 154
Query: 235 RPSSYHHCTLLVNVNKSRLSQSL 257
+ + H +LV+ + LS L
Sbjct: 155 KGAKLWHAAMLVHTDLDMLSAVL 177
>pdb|2ARS|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A From
Thermoplasma Acidophilum
Length = 262
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
+ + N +LA ++ +Y++F + + ++ +R++ V+IG Q +E +L
Sbjct: 6 LLLETPGNTRXSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYXKKN 65
Query: 115 GIEIARRNSGGGTVYHDSGNLNVT 138
GI +ARR +GGG VYHD G+LN +
Sbjct: 66 GIXLARRYTGGGAVYHDLGDLNFS 89
>pdb|3BMA|A Chain A, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|B Chain B, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|C Chain C, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|D Chain D, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|E Chain E, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|F Chain F, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
Length = 407
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 152 LEIISRTLEREWNIQTEINTREDIVYD---GKYKVIIPTLISYQTYQEIISRTLER 204
+E+++R ER+ + + + R + YD KY I+P SYQ ++++ E+
Sbjct: 180 IELLARFNERQASFFGQFSVRGYVNYDKHVAKYLKILPDQFSYQAIEDVVKADAEK 235
>pdb|2P5I|A Chain A, Crystal Structure Of Protein Bh3822 From Bacillus
Halodurans, A Member Of The BiotinLIPOATE AB PROTEIN
Ligase Family
Length = 288
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 88 WRNNPCVVIGRHQNPWQETNLGVLYDEGIE--IARRNSGGGTVYHDSGNLNVTFFTPRER 145
W ++ VV+G + + G+ +G + + RNSGG V DSG LN++ E+
Sbjct: 55 WVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEK 114
>pdb|1ENI|A Chain A, Crystal Structure Of A Pyrimidine Dimer Specific Excision
Repair Enzyme From Bacteriophage T4: Refinement At 1.45
Angstroms And X-Ray Analysis Of The Three Active Site
Mutants
Length = 138
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 133 GNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDI 175
G +VTFF + + R+ +E+I+ L+R +NI+ T +DI
Sbjct: 53 GAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKD--TTVQDI 93
>pdb|1ENJ|A Chain A, Crystal Structure Of A Pyrimidine Dimer Specific Excision
Repair Enzyme From Bacteriophage T4: Refinement At 1.45
Angstroms And X-Ray Analysis Of The Three Active Site
Mutants
Length = 138
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 133 GNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDI 175
G +VTFF + + R+ +E+I+ L+R +NI+ T +DI
Sbjct: 53 GAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKD--TTVQDI 93
>pdb|1VAS|A Chain A, Atomic Model Of A Pyrimidine Dimer Specific Excision
Repair Enzyme Complexed With A Dna Substrate: Structural
Basis For Damaged Dna Recognition
Length = 137
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 133 GNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDI 175
G +VTFF + + R+ +E+I+ L+R +NI+ T +DI
Sbjct: 52 GAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKD--TTVQDI 92
>pdb|1ENK|A Chain A, Crystal Structure Of A Pyrimidine Dimer Specific Excision
Repair Enzyme From Bacteriophage T4: Refinement At 1.45
Angstroms And X-Ray Analysis Of The Three Active Site
Mutants
Length = 138
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 133 GNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDI 175
G +VTFF + + R+ +E+I+ L+R +NI+ T +DI
Sbjct: 53 GAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKD--TTVQDI 93
>pdb|2END|A Chain A, Crystal Structure Of A Pyrimidine Dimer Specific Excision
Repair Enzyme From Bacteriophage T4: Refinement At 1.45
Angstroms And X-Ray Analysis Of The Three Active Site
Mutants
Length = 138
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 133 GNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDI 175
G +VTFF + + R+ +E+I+ L+R +NI+ T +DI
Sbjct: 53 GAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKD--TTVQDI 93
>pdb|2FCC|A Chain A, Crystal Structure Of T4 Pyrimidine Dimer Glycosylase
(T4-Pdg) Covalently Complexed With A Dna Substrate
Containing Abasic Site
pdb|2FCC|B Chain B, Crystal Structure Of T4 Pyrimidine Dimer Glycosylase
(T4-Pdg) Covalently Complexed With A Dna Substrate
Containing Abasic Site
Length = 137
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 133 GNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDI 175
G +VTFF + + R+ +E+I+ L+R +NI+ T +DI
Sbjct: 52 GAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKD--TTVQDI 92
>pdb|3LZA|A Chain A, Crystal Structure Of Putative Snoal-Like Polyketide
Cyclase (Yp_563807.1) From Shewanella Denitrificans
Os-217 At 1.70 A Resolution
pdb|3LZA|B Chain B, Crystal Structure Of Putative Snoal-Like Polyketide
Cyclase (Yp_563807.1) From Shewanella Denitrificans
Os-217 At 1.70 A Resolution
pdb|3LZA|C Chain C, Crystal Structure Of Putative Snoal-Like Polyketide
Cyclase (Yp_563807.1) From Shewanella Denitrificans
Os-217 At 1.70 A Resolution
pdb|3LZA|D Chain D, Crystal Structure Of Putative Snoal-Like Polyketide
Cyclase (Yp_563807.1) From Shewanella Denitrificans
Os-217 At 1.70 A Resolution
Length = 141
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 202 LEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHH------CTLLVNVNKSRLSQ 255
LE ++NI+ NT +V G Y + G + G+P TL + N RL++
Sbjct: 65 LEFDFNIEHXFNTGPLVVXIGNYHLRGPGEQFGKPGKIIDIAIPGVTTLKFDPNTQRLTE 124
Query: 256 SL 257
+
Sbjct: 125 QV 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,195,690
Number of Sequences: 62578
Number of extensions: 337921
Number of successful extensions: 666
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 22
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)