Query psy2667
Match_columns 261
No_of_seqs 144 out of 1117
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:06:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03822 lplA lipoate-protein 100.0 1.4E-46 3.1E-51 351.9 19.9 164 51-260 2-169 (338)
2 PRK14061 unknown domain/lipoat 100.0 2.5E-45 5.3E-50 360.1 20.5 163 52-260 227-393 (562)
3 TIGR00545 lipoyltrans lipoyltr 100.0 8.9E-45 1.9E-49 338.2 19.4 162 54-260 2-167 (324)
4 COG0095 LplA Lipoate-protein l 100.0 6.9E-41 1.5E-45 301.5 17.2 161 53-260 2-172 (248)
5 KOG3159|consensus 100.0 4.5E-41 9.8E-46 304.8 13.9 166 51-260 8-176 (336)
6 PF03099 BPL_LplA_LipB: Biotin 99.8 2.3E-19 4.9E-24 143.3 10.9 117 96-249 1-125 (125)
7 PRK14348 lipoate-protein ligas 98.7 9.7E-07 2.1E-11 78.8 16.8 129 82-254 38-178 (221)
8 PRK14343 lipoate-protein ligas 98.6 2.6E-06 5.6E-11 76.6 17.2 155 52-254 14-179 (235)
9 PRK14342 lipoate-protein ligas 98.6 3E-06 6.5E-11 75.3 16.3 146 59-254 12-164 (213)
10 PRK14341 lipoate-protein ligas 98.5 6.8E-06 1.5E-10 73.0 16.2 147 59-254 11-172 (213)
11 PRK14347 lipoate-protein ligas 98.4 2.2E-05 4.7E-10 69.6 16.6 141 65-254 15-169 (209)
12 PRK14345 lipoate-protein ligas 98.4 3E-05 6.5E-10 69.9 17.1 152 53-254 12-175 (234)
13 PRK14344 lipoate-protein ligas 98.3 3.5E-05 7.7E-10 68.9 16.3 144 65-254 31-182 (223)
14 PRK14346 lipoate-protein ligas 98.3 4.4E-05 9.6E-10 68.5 16.6 155 72-254 22-189 (230)
15 PRK14349 lipoate-protein ligas 98.3 2.7E-05 5.9E-10 69.4 14.9 139 67-254 15-165 (220)
16 TIGR00214 lipB lipoate-protein 98.2 4E-05 8.6E-10 66.7 13.9 127 82-255 12-145 (184)
17 COG0321 LipB Lipoate-protein l 98.0 0.00023 5E-09 63.3 13.9 126 81-255 40-172 (221)
18 KOG0325|consensus 97.2 0.02 4.4E-07 51.0 15.2 157 52-253 6-171 (226)
19 PRK08330 biotin--protein ligas 95.4 0.14 3E-06 45.7 9.8 35 206-242 87-121 (236)
20 PTZ00275 biotin-acetyl-CoA-car 95.1 0.081 1.7E-06 48.9 7.4 23 206-229 116-138 (285)
21 PRK08477 biotin--protein ligas 94.8 0.13 2.8E-06 45.7 7.6 30 206-236 89-118 (211)
22 PTZ00276 biotin/lipoate protei 94.5 0.16 3.5E-06 45.8 7.8 25 207-232 96-120 (245)
23 PRK05935 biotin--protein ligas 84.7 3.7 8.1E-05 35.8 7.0 20 210-230 94-113 (190)
24 COG0340 BirA Biotin-(acetyl-Co 82.8 3.3 7.2E-05 37.4 6.0 24 209-233 85-108 (238)
25 TIGR00121 birA_ligase birA, bi 82.8 3.7 7.9E-05 36.6 6.3 21 210-231 89-109 (237)
26 PRK11886 bifunctional biotin-- 77.9 7.1 0.00015 36.2 6.7 20 210-230 168-187 (319)
27 PRK06955 biotin--protein ligas 76.9 8.9 0.00019 35.6 7.0 21 209-230 132-152 (300)
28 PRK13325 bifunctional biotin-- 71.9 11 0.00023 38.6 6.7 24 206-230 170-193 (592)
29 PF02603 Hpr_kinase_N: HPr Ser 29.9 30 0.00065 27.9 1.4 32 90-122 81-112 (127)
30 TIGR02617 tnaA_trp_ase tryptop 28.4 36 0.00077 34.0 1.9 49 110-166 340-388 (467)
31 PF02402 Lysis_col: Lysis prot 22.8 40 0.00086 22.9 0.7 20 108-131 16-35 (46)
32 PF09322 DUF1979: Domain of un 22.6 1.2E+02 0.0026 21.5 3.0 39 128-166 9-57 (58)
33 KOG1536|consensus 21.9 2.4E+02 0.0051 29.1 6.2 40 208-248 481-525 (649)
34 PF04017 DUF366: Domain of unk 20.7 4.8E+02 0.01 22.9 7.1 46 200-248 93-138 (183)
35 PRK11835 hypothetical protein; 20.3 4.4E+02 0.0094 21.3 6.2 102 16-123 3-109 (114)
No 1
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=100.00 E-value=1.4e-46 Score=351.86 Aligned_cols=164 Identities=36% Similarity=0.652 Sum_probs=150.2
Q ss_pred ceeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceee
Q psy2667 51 IQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYH 130 (261)
Q Consensus 51 ~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~h 130 (261)
.+++++.+.+.||+.|||+||+|++++..+ +|+|++|+|+|||+|||||++|.|+|+++|+++||+||||+||||||||
T Consensus 2 ~~~~~i~s~~~dp~~NlAlEe~Ll~~~~~~-~~~l~~w~n~p~VvIGr~Qn~~~Evn~~~~~~~gI~vvRR~SGGGAVyh 80 (338)
T PRK03822 2 STLRLLISDSYDPWFNLAVEECIFRQMPAT-QRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFH 80 (338)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHhcCCCC-CCEEEEEcCCCeEEECCCCCHHHHhCHHHHHHcCCcEEEECCCCceEEE
Confidence 467889999999999999999999998755 6899999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEecCCCCCccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeE
Q psy2667 131 DSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQT 210 (261)
Q Consensus 131 d~G~ln~Sli~p~~~~~~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a 210 (261)
|+|++|||++.+...++.....++|+++| +.|||+ +
T Consensus 81 D~Gnl~~s~i~~~~~~~~~~~~~~ii~aL-~~lGi~-------------------------------------------a 116 (338)
T PRK03822 81 DLGNTCFTFMAGKPEYDKTISTSIVLNAL-NSLGVS-------------------------------------------A 116 (338)
T ss_pred cCCCcEEEEEeCCCccCHHHHHHHHHHHH-HHcCCc-------------------------------------------e
Confidence 99999999999876666666678888888 677765 5
Q ss_pred EecCCCCeeeC----CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667 211 EINTREDIVYD----GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 260 (261)
Q Consensus 211 ~~~g~~Dl~v~----Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~ 260 (261)
+.+++|||+++ || ||+||||++.++++|||||||+++|++.|.++|++.
T Consensus 117 ~~~~rnDi~v~~~~g~k-KisGsAq~~~~~~~l~HGTlL~~~d~~~l~~~L~~~ 169 (338)
T PRK03822 117 EASGRNDLVVKTAEGDR-KVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPD 169 (338)
T ss_pred eECCCccEEEecCCCCc-EEEEEeeeeeCCeEEEEEEEEecCCHHHHHHHhCCC
Confidence 66899999995 68 999999999999999999999999999999999875
No 2
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=360.13 Aligned_cols=163 Identities=36% Similarity=0.655 Sum_probs=149.1
Q ss_pred eeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeec
Q psy2667 52 QKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHD 131 (261)
Q Consensus 52 ~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd 131 (261)
+++++.+.+.||++|||+||+|+++... +.+++++|+|+|||+|||||++|.|||+++|+++||+||||+|||||||||
T Consensus 227 ~m~~i~s~s~dp~~NLAlEE~Ll~~~~~-~~~~l~lW~n~ptVvIGrnQN~~~EVNl~~~~~~gI~vVRR~SGGGAVYHD 305 (562)
T PRK14061 227 TLRLLISDSYDPWFNLAVEECIFRQMPA-TQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHD 305 (562)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHhcCCC-CCCEEEEEcCCCEEEECCCCCchhhhCHHHHHhcCCcEEEECCCCcEEEEc
Confidence 4788889999999999999999999764 368999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCCccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEE
Q psy2667 132 SGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTE 211 (261)
Q Consensus 132 ~G~ln~Sli~p~~~~~~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~ 211 (261)
.|++|||++.+...++...+.++|+++| +.+|++ ++
T Consensus 306 ~GNlnfSfi~~~~~~~~~~~~~~Ii~aL-~~LGI~-------------------------------------------ae 341 (562)
T PRK14061 306 LGNTCFTFMAGKPEYDKTISTSIVLNAL-NALGVS-------------------------------------------AE 341 (562)
T ss_pred CCceEEEEEeCCcccchHHHHHHHHHHH-HHcCCC-------------------------------------------eE
Confidence 9999999999876666666678888888 666665 66
Q ss_pred ecCCCCeee----CCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667 212 INTREDIVY----DGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 260 (261)
Q Consensus 212 ~~g~~Dl~v----~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~ 260 (261)
++++|||++ +|| ||||+||++.++++|||||||+|+|++.|.++|++.
T Consensus 342 ~sgRNDI~v~~~~~Gk-KISGsAq~~~~~~~lhHGTLL~d~dl~~L~~~L~~~ 393 (562)
T PRK14061 342 ASGRNDLVVKTAEGDR-KVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPD 393 (562)
T ss_pred ECCCccEEEeeCCCCc-EEEEEeEEEeCCeEEEEEEEEecCCHHHHHHHhCCC
Confidence 789999999 699 999999999999999999999999999999999875
No 3
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=100.00 E-value=8.9e-45 Score=338.18 Aligned_cols=162 Identities=37% Similarity=0.698 Sum_probs=143.5
Q ss_pred EEEEcCCCCHhHHHHHHHHHHhcccCCC-CcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecC
Q psy2667 54 SVFISQSSNIFTNLALEDWLYKNFDFTN-HHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDS 132 (261)
Q Consensus 54 ~v~~~~~~d~~~nlAlDe~Ll~~~~~~~-~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~ 132 (261)
+++.+.+.||+.|||+||+|++++..++ .|+||||+++|||+|||+|++|+|+|+++|+++||+|+||+|||||||||+
T Consensus 2 ~~i~~~~~d~~~nlA~ee~Ll~~~~~~~~~~~l~~w~~~p~vviG~~Q~~~~ev~~~~~~~~gi~vvRR~sGGGaVyhD~ 81 (324)
T TIGR00545 2 RILTSPSNDPYFNLALEEYLFKEFPKTQRGKVLLFWQNANTIVIGRNQNTWAEVNLKELEEDNVNLFRRFSGGGAVFHDL 81 (324)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHccccCCCCcEEEEEcCCCeEEECCCCCHHHHhCHHHHHHcCCeEEEECCCCceEEEcC
Confidence 5778899999999999999999987654 469999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEecCCC--CC-ccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhcccee
Q psy2667 133 GNLNVTFFTPRER--YN-RRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQ 209 (261)
Q Consensus 133 G~ln~Sli~p~~~--~~-~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~ 209 (261)
|++|||++.|.+. +. ...+++.|+++| +.||+ +
T Consensus 82 g~l~~s~i~~~~~~~~~~~~~~~~~i~~aL-~~lGi-------------------------------------------~ 117 (324)
T TIGR00545 82 GNICFSFITPKDGKEFENAKIFTRNVIKAL-NSLGV-------------------------------------------E 117 (324)
T ss_pred CceEEEEEEcCCccchhhHHHHHHHHHHHH-HHhCC-------------------------------------------C
Confidence 9999999999843 22 133456666666 55554 4
Q ss_pred EEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667 210 TEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 260 (261)
Q Consensus 210 a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~ 260 (261)
+++.++|||+++|| ||+||||++.++++|||||||+++|++.|.++|++.
T Consensus 118 a~~~~rnDl~v~gk-KisGsAq~~~~~~~l~HGtlL~~~d~~~l~~~L~~~ 167 (324)
T TIGR00545 118 AELSGRNDLVVDGR-KISGSAYYITKDRGFHHGTLLFDADLSKLAKYLNVD 167 (324)
T ss_pred eEECCCceEEECCE-EEEEEeeeeeCCEEEEEEEEEccCCHHHHHHhcCCC
Confidence 66778999999999 999999999999999999999999999999999874
No 4
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=100.00 E-value=6.9e-41 Score=301.46 Aligned_cols=161 Identities=35% Similarity=0.508 Sum_probs=137.1
Q ss_pred eEEEEcCC--CCHhHHHHHHHHHHhcccCCCCcEEEEe-ecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCcee
Q psy2667 53 KSVFISQS--SNIFTNLALEDWLYKNFDFTNHHVMLLW-RNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVY 129 (261)
Q Consensus 53 ~~v~~~~~--~d~~~nlAlDe~Ll~~~~~~~~p~Lrly-~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~ 129 (261)
++++.... .||+.|||+||+||+++..++ ++|+| .++|+|+|||+|++++|+|+++++++||+||||+|||||||
T Consensus 2 ~~~~~~~~~~~~~~~n~A~de~ll~~~~~~~--~i~~~~~~~~~v~lG~~q~~~~Ev~~~~~~~~~i~vvRR~sGGGaV~ 79 (248)
T COG0095 2 WRIIDLGIRDFDPAFNLALDEALLRSLSEGG--TLRLYWWNPPTVVLGRFQNTLPEVNLEYVKEDGIPVVRRPSGGGAVF 79 (248)
T ss_pred eeEEeccccCCCHHHHHHHHHHHHHhCCCCC--eEEEEEECCCeEEECCccchHhHhhHHHHHHcCCcEEEEcCCCceEE
Confidence 56666555 559999999999999997554 55555 59999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEEecCCCCC--c----cchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhh
Q psy2667 130 HDSGNLNVTFFTPRERYN--R----RNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLE 203 (261)
Q Consensus 130 hd~G~ln~Sli~p~~~~~--~----~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~ 203 (261)
||+|++|||+++|.+... . ..+++.+.+++ +
T Consensus 80 hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l-~------------------------------------------ 116 (248)
T COG0095 80 HDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDAL-R------------------------------------------ 116 (248)
T ss_pred ecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHH-H------------------------------------------
Confidence 999999999999998631 1 12234444444 3
Q ss_pred hcccee-EEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667 204 REWNIQ-TEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 260 (261)
Q Consensus 204 ~~~g~~-a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~ 260 (261)
.+|+. ++++++|||+++|| ||+|+||++.+++++|||||+++.|++.|.++|++.
T Consensus 117 -~lgv~~~~~~~~nDl~v~gk-KisG~Aq~~~~~~~l~hgtll~~~d~~~l~~~l~~~ 172 (248)
T COG0095 117 -ALGVEGAECPGRNDLVVDGK-KISGSAQRRTKGRILHHGTLLLDIDLELLARVLRVP 172 (248)
T ss_pred -HcCCCeeccCCCcceeEcCc-EEeeHHHHhhCCcEEEEEEEEEeCCHHHHHHHhCCC
Confidence 44555 78899999999999 999999999999999999999999999999999875
No 5
>KOG3159|consensus
Probab=100.00 E-value=4.5e-41 Score=304.80 Aligned_cols=166 Identities=50% Similarity=0.865 Sum_probs=149.1
Q ss_pred ceeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceee
Q psy2667 51 IQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYH 130 (261)
Q Consensus 51 ~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~h 130 (261)
+...|+.+.|.|+++|||+|++++++....+.++|+||.|.|||||||+||||.|+|+.+|++++|+++||.||||||||
T Consensus 8 k~~~V~~s~S~~~y~NLAlE~~l~~~~~~~~~~~Ll~w~N~p~vVIGRhQNpw~E~nv~~~~e~~I~liRR~SGGGTVyH 87 (336)
T KOG3159|consen 8 KGRFVLQSLSSDPYYNLALENYLYRHKNGPDKHILLLWINDPCVVIGRHQNPWQEANVALLRENNIPLIRRFSGGGTVYH 87 (336)
T ss_pred ccceEEEEecCchhhhhHHHHHHHhhccCCCCeEEEEEeCCceEEEccCCCcceeccHHHHHhcCCeEEEEecCCceEEE
Confidence 45678889999999999999999987765568999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEecCCCCCccchHHHHHHHHH-HHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhcccee
Q psy2667 131 DSGNLNVTFFTPRERYNRRNNLEIISRTLE-REWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQ 209 (261)
Q Consensus 131 d~G~ln~Sli~p~~~~~~~~~~~~i~~aL~-~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~ 209 (261)
|.|+||||++++++.+++.+.+.++++||. .+++ +.
T Consensus 88 DlGNLN~S~lt~re~~~r~~nlk~iv~ALn~~e~~-------------------------------------------v~ 124 (336)
T KOG3159|consen 88 DLGNLNYSLLTNREKFDRKENLKIIVRALNGDEPF-------------------------------------------VK 124 (336)
T ss_pred ecCceeEEEEccHHHcCcccchHHHHHHhccCCce-------------------------------------------Ee
Confidence 999999999999999999999999999992 1333 33
Q ss_pred EEecCCCCeeeC--CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667 210 TEINTREDIVYD--GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 260 (261)
Q Consensus 210 a~~~g~~Dl~v~--Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~ 260 (261)
+....+.|++.. +| ||+|||++..++..+||+|+|++.|++.|...|.+.
T Consensus 125 v~~nqR~Di~l~~g~r-KiSGtA~kI~r~raYHH~T~L~~aDl~~ls~lL~sp 176 (336)
T KOG3159|consen 125 VNLNQRDDIVLDFGQR-KISGTAYKIARNRAYHHCTMLLNADLENLSELLKSP 176 (336)
T ss_pred ecccccccceecccCc-eeccchhhhcCCceeeeEEeEeccchHHHHhhccCC
Confidence 455566777765 77 999999999999999999999999999999999874
No 6
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.81 E-value=2.3e-19 Score=143.26 Aligned_cols=117 Identities=30% Similarity=0.421 Sum_probs=90.4
Q ss_pred cCCCCCCc-cccChhhHhhcCCeEEEeccCCCceeec-CCceEEEEEecCCCCCc--cc----hHHHHHHHHHHHhCccc
Q psy2667 96 IGRHQNPW-QETNLGVLYDEGIEIARRNSGGGTVYHD-SGNLNVTFFTPRERYNR--RN----NLEIISRTLEREWNIQT 167 (261)
Q Consensus 96 lG~~Q~~~-~evnl~~~~~~gi~VvRR~TGGGaV~hd-~G~ln~Sli~p~~~~~~--~~----~~~~i~~aL~~~lGi~a 167 (261)
+|++|+++ ++++.+.+++.+++++||+||||+|+|+ +|+++||++.+.+.... .. ....+..++ +.++ .
T Consensus 1 ~g~~~~st~~~~~~~~~~~~~v~v~~rqtgG~~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~- 77 (125)
T PF03099_consen 1 IGYFQDSTKEELNQEELKEGGVPVARRQTGGRRVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVL-EALG-E- 77 (125)
T ss_dssp EETTBSHHHHHHHHHHHHCTTEEEEEESSSSBEEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHH-HHHH-H-
T ss_pred CcCeECHHHHHHHHhcCccCCEEEEEEeeCCcceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHH-HHhh-h-
Confidence 68999998 8999999999999999999999999999 58999999999875221 11 122222222 3332 0
Q ss_pred cccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEee
Q psy2667 168 EINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVN 247 (261)
Q Consensus 168 ~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~ 247 (261)
+. .+..|+.+....+|||.+++| ||+|++|++.++..++|++|.++
T Consensus 78 -~~--------------------------------~~~~~~~~~~kw~nDi~~~~k-Ki~Gil~~~~~~~~~~~~~igig 123 (125)
T PF03099_consen 78 -FG--------------------------------PGEPGIDCFIKWPNDIYVNGK-KIAGILQERRRGGILHHGSIGIG 123 (125)
T ss_dssp -TT--------------------------------HTTTTSSEEEETTTEEEETTE-EEEEEEEEEETTEEEEEEEEESS
T ss_pred -hc--------------------------------cccCCCceEEeCCCCccCCCc-EEEEEeEeeeCCcEEEEEEEEEe
Confidence 00 012344566779999999999 99999999999999999999998
Q ss_pred cC
Q psy2667 248 VN 249 (261)
Q Consensus 248 ~d 249 (261)
.|
T Consensus 124 ~N 125 (125)
T PF03099_consen 124 IN 125 (125)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 7
>PRK14348 lipoate-protein ligase B; Provisional
Probab=98.72 E-value=9.7e-07 Score=78.77 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=93.1
Q ss_pred CcEEEEeecCCeeecCCCCCCcccc-ChhhHhhcCCeEEEeccCCCceeecCCceEEEEEecCCCC--Cccch----HHH
Q psy2667 82 HHVMLLWRNNPCVVIGRHQNPWQET-NLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERY--NRRNN----LEI 154 (261)
Q Consensus 82 ~p~Lrly~~~p~VvlG~~Q~~~~ev-nl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p~~~~--~~~~~----~~~ 154 (261)
+.+|.|-+.+|..++|+..++..-. +.+.+++.|++|++=.=||+..||+||++..-.|++-..+ +...+ -+.
T Consensus 38 ~d~llllEH~pVyT~G~~~~~~~ll~~~~~l~~~~~~v~~t~RGG~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~lE~~ 117 (221)
T PRK14348 38 ENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPILNLEEFGLGLKEYVHLLEEA 117 (221)
T ss_pred CCEEEEEcCCCCeeCCcCCCchhccCChhhhcccCCcEEEeCCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHH
Confidence 4689999999999999987755333 3455778899999999999999999999877777775543 22222 234
Q ss_pred HHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEecCCCCeeeC-----CceeEEee
Q psy2667 155 ISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYD-----GKYKISGT 229 (261)
Q Consensus 155 i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~~g~~Dl~v~-----Gk~KIsGs 229 (261)
++++| .++||++. ..++...++++ ++ ||+..
T Consensus 118 vI~~l-~~~gi~~~------------------------------------------~~~~~~GVWv~~~~~~~~-KIaaI 153 (221)
T PRK14348 118 VIRVC-ASYGVVAG------------------------------------------RLEKATGVWLEGDTSRAR-KICAI 153 (221)
T ss_pred HHHHH-HHcCCcee------------------------------------------ecCCCCCEEecCCCCCCC-cEEEE
Confidence 44444 55666531 22344556665 57 99999
Q ss_pred eEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 230 AAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 230 Aqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
..+.+++...|.-+|=++.|+..+.
T Consensus 154 Gv~v~r~vT~HG~ALNv~~dL~~F~ 178 (221)
T PRK14348 154 GVRSSHYVTMHGLALNVNTDLRYFS 178 (221)
T ss_pred eEEeccceeecceEEEecCChHHhc
Confidence 9999998777666999999987654
No 8
>PRK14343 lipoate-protein ligase B; Provisional
Probab=98.63 E-value=2.6e-06 Score=76.61 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=102.3
Q ss_pred eeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeec
Q psy2667 52 QKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHD 131 (261)
Q Consensus 52 ~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd 131 (261)
...++.-...+=...+.+-+.+.+....+.+.+|.|-+.+|..++|++.+++.-. ....|++|++=.=||...||+
T Consensus 14 ~~~v~~lG~v~Y~~a~~~q~~~~~~~~~~~~d~llllEHppVyT~G~~~~~~~ll----~~~~~i~v~~tdRGG~iTyHG 89 (235)
T PRK14343 14 PVTVRWRGREPYEACFDAMRAFTDARTADTPDEIWLVEHPPVYTLGQAGDPAHLL----VADSGIPLVKVDRGGQITYHG 89 (235)
T ss_pred ceEEEeCCCcCHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeeCCCCCChhhcc----CCcCCCCEEEeCCCCceeEeC
Confidence 3444444333333444554555554443445688888999999999987754221 124589999999999999999
Q ss_pred CCceEEEEEecCCCC--Cccch----HHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhc
Q psy2667 132 SGNLNVTFFTPRERY--NRRNN----LEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLERE 205 (261)
Q Consensus 132 ~G~ln~Sli~p~~~~--~~~~~----~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~ 205 (261)
||+|..-.|++-... +...+ -+.++++| .++||+++..
T Consensus 90 PGQLV~YpIl~L~~~~~~v~~yv~~lE~~vI~~l-~~~gi~~~~~----------------------------------- 133 (235)
T PRK14343 90 PGQVVAYLLLDLRRRKLMVRELVTRIEQAVIDTL-AAYNLASERK----------------------------------- 133 (235)
T ss_pred CCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHH-HHcCCceeec-----------------------------------
Confidence 999877777775543 22222 23455555 6677663221
Q ss_pred cceeEEecCCCCeeeC-----CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 206 WNIQTEINTREDIVYD-----GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 206 ~g~~a~~~g~~Dl~v~-----Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
.+.--++++ ++ ||+-...+.+++...|.-+|=++.|+..+.
T Consensus 134 -------~~~~GVwv~~~~~~~~-KIaaIGv~v~r~vT~HG~ALNv~~DL~~F~ 179 (235)
T PRK14343 134 -------AGAPGIYVASGPHQGA-KIAALGLKIRNGCSYHGLSLNVKMDLRPFL 179 (235)
T ss_pred -------CCCCeEEEeCCCCCCC-eEEEEeeeeecceeecccEEEeCCCchhhC
Confidence 223344454 78 999999999998777666999999988754
No 9
>PRK14342 lipoate-protein ligase B; Provisional
Probab=98.60 E-value=3e-06 Score=75.29 Aligned_cols=146 Identities=21% Similarity=0.282 Sum_probs=100.5
Q ss_pred CCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEEE
Q psy2667 59 QSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVT 138 (261)
Q Consensus 59 ~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~S 138 (261)
...+=...+++-+.+.+....+.+.+|.|-+.+|..++|++.+.+.- +...++++++=.=||+..||+||+|-.-
T Consensus 12 g~~~Y~~a~~~Q~~l~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~l-----l~~~~~~v~~~~RGG~iTyHGPGQLV~Y 86 (213)
T PRK14342 12 GLQPYEPVWQAMQEFTDTRDEETPDEIWLVEHPPVFTQGQAGKPEHI-----LNPGDIPVVQSDRGGQVTYHGPGQLVMY 86 (213)
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCccCCCCCChhhc-----cCCCCCcEEEecCCCceEEECCCeEEEE
Confidence 33344455555555655544444578889999999999998875422 2356899999999999999999998777
Q ss_pred EEecCCCC--CccchH----HHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEe
Q psy2667 139 FFTPRERY--NRRNNL----EIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEI 212 (261)
Q Consensus 139 li~p~~~~--~~~~~~----~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~ 212 (261)
.|++-... +...+. +.+++++ +.+||+ +..
T Consensus 87 pIl~L~~~~~~~~~yv~~lE~~vi~~l-~~~gi~-------------------------------------------~~~ 122 (213)
T PRK14342 87 VLLDLKRLKLGVRQLVTAIEQTVINTL-AEYGIE-------------------------------------------AHA 122 (213)
T ss_pred EEEEccccCCCHHHHHHHHHHHHHHHH-HHcCCc-------------------------------------------eee
Confidence 77766543 222222 2344444 555554 332
Q ss_pred -cCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 213 -NTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 213 -~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
++.--++++++ ||+-...+.+++...|--+|=++.|+.-+.
T Consensus 123 ~~~~~GVWv~~~-KIaaIGv~v~r~vT~HG~AlNv~~dL~~F~ 164 (213)
T PRK14342 123 KPDAPGVYVDGK-KIASLGLRIRRGCSFHGLALNVNMDLSPFL 164 (213)
T ss_pred cCCCCcCcccCC-EEEEEEEeEecceeecceeEecCCCchhhC
Confidence 34556778888 999999999988776666999999987653
No 10
>PRK14341 lipoate-protein ligase B; Provisional
Probab=98.51 E-value=6.8e-06 Score=73.00 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=99.7
Q ss_pred CCCCHhHHHHHHHHHHhcccCCC-CcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEE
Q psy2667 59 QSSNIFTNLALEDWLYKNFDFTN-HHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNV 137 (261)
Q Consensus 59 ~~~d~~~nlAlDe~Ll~~~~~~~-~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~ 137 (261)
...+=...+++-+.+.+....+. +.+|.|-+.+|..++|++.+.+.- +...+++|++=.=||...||+||+|..
T Consensus 11 g~~~Y~~~~~~q~~~~~~~~~~~~~~~llllEH~pVyT~G~~~~~~~l-----l~~~~i~v~~t~RGG~iTyHGPGQlV~ 85 (213)
T PRK14341 11 GLVPYPEALAFMEARVAAIAAGTADELVWLLEHPPLYTAGTSAKAEDL-----LDPDRFPVYETGRGGQYTYHGPGQRVA 85 (213)
T ss_pred CccCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCeeCCCCCChhhc-----cCCCCCCEEEeCCCcceeEECCCeEEE
Confidence 33333456666666666544443 457778899999999998875422 245689999999999999999999877
Q ss_pred EEEecCCCC--Cccch----HHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEE
Q psy2667 138 TFFTPRERY--NRRNN----LEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTE 211 (261)
Q Consensus 138 Sli~p~~~~--~~~~~----~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~ 211 (261)
-.|++-... +...+ -+.++++| +.+||++..
T Consensus 86 YpIl~L~~~~~~v~~yv~~lE~~iI~~l-~~~gi~~~~------------------------------------------ 122 (213)
T PRK14341 86 YVMLDLKRRRRDVRAFVAALEEWIIATL-AAFNIRGER------------------------------------------ 122 (213)
T ss_pred EEEEEccccCCCHHHHHHHHHHHHHHHH-HHhCCceEE------------------------------------------
Confidence 777775543 22222 23444555 667766321
Q ss_pred ecCCCCeeeC--------CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 212 INTREDIVYD--------GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 212 ~~g~~Dl~v~--------Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
..+.--++++ .+ ||+-...+.+++...|--+|=++.|+.-+.
T Consensus 123 ~~~~~GVWv~~~~~~~~~~~-KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~ 172 (213)
T PRK14341 123 REDRVGVWVRRPDKGSGAED-KIAAIGVRLRRWVSFHGISINVEPDLSHFS 172 (213)
T ss_pred cCCCCeEEecCccCCCCCCC-cEEEEeeeEecceeccceEEEecCChhhhC
Confidence 1222344444 37 999999999998887766999999987764
No 11
>PRK14347 lipoate-protein ligase B; Provisional
Probab=98.40 E-value=2.2e-05 Score=69.59 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcccCCC-CcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEEEEEecC
Q psy2667 65 TNLALEDWLYKNFDFTN-HHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPR 143 (261)
Q Consensus 65 ~nlAlDe~Ll~~~~~~~-~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p~ 143 (261)
..+.+-+.+.+....+. +.+|.+-+.+|..++|++.+.+. + +...+++|++=.=||...||+||++-.-.|++-
T Consensus 15 ~a~~~q~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~-l----l~~~~i~v~~t~RGG~vTyHGPGQlV~YpIldL 89 (209)
T PRK14347 15 VTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTNYKQEE-L----LNYGDIPVIYTGRGGKFTFHGPGQRVIYPILNL 89 (209)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCeeCCCCCChhh-c----ccccCCcEEEecCCcceEEeCCCcEEEEEEEec
Confidence 44444455555544443 57899999999999999877432 2 345689999999999999999999876666665
Q ss_pred CCC----Cccch----HHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEecCC
Q psy2667 144 ERY----NRRNN----LEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTR 215 (261)
Q Consensus 144 ~~~----~~~~~----~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~~g~ 215 (261)
... +...+ -+.++++| ..+||++... .+.
T Consensus 90 ~~~~~~~~v~~yv~~lE~~ii~~l-~~~gi~~~~~------------------------------------------~~~ 126 (209)
T PRK14347 90 ASPNRHKDLKLYIKMLEEWIINSL-NYFGIKAYII------------------------------------------KDK 126 (209)
T ss_pred cccccCCCHHHHHHHHHHHHHHHH-HHcCCceEEc------------------------------------------CCC
Confidence 432 22222 23444555 6677664221 122
Q ss_pred CCeeeC-----CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 216 EDIVYD-----GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 216 ~Dl~v~-----Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
-=++++ ++ ||+-...+.+++...|.-+|=++.|+..+.
T Consensus 127 ~GVWv~~~~~~~~-KIaaiGv~v~r~vT~HG~AlNv~~dL~~F~ 169 (209)
T PRK14347 127 VGIWVKVRKDEFA-KIAAIGVRVRKWVTYHGVAINISTDLSKFS 169 (209)
T ss_pred CEEEEcCCCCCCc-eEEEEeEEEecceeecceEEEeCCCccccC
Confidence 223332 68 999999999998777666999999877654
No 12
>PRK14345 lipoate-protein ligase B; Provisional
Probab=98.38 E-value=3e-05 Score=69.86 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=101.8
Q ss_pred eEEEEcCCCCHhHHHHHHHHHHhcccCC-CCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeec
Q psy2667 53 KSVFISQSSNIFTNLALEDWLYKNFDFT-NHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHD 131 (261)
Q Consensus 53 ~~v~~~~~~d~~~nlAlDe~Ll~~~~~~-~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd 131 (261)
..+......+=...+++-+.+.+....+ ..++|.+-+.+|..++|++.+++. + ...+++|++=.=||...||+
T Consensus 12 ~~~~~lG~~~Y~~~~~~Q~~l~~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~-l-----~~~~i~v~~tdRGG~iTyHG 85 (234)
T PRK14345 12 IEVRRLGLVDYQEAWDLQRELADARVAGEGPDTLLLLEHPAVYTAGKRTEPHE-R-----PTDGTPVVDVDRGGKITWHG 85 (234)
T ss_pred eEEEECCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccCCCCCCccc-c-----ccCCCcEEEecCCCceeEeC
Confidence 3444344444445566666666655544 467899999999999999887542 2 23489999999999999999
Q ss_pred CCceEEEEEecCCC-CCccch----HHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhcc
Q psy2667 132 SGNLNVTFFTPRER-YNRRNN----LEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREW 206 (261)
Q Consensus 132 ~G~ln~Sli~p~~~-~~~~~~----~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~ 206 (261)
||+|..-.|++-.. .+...+ -+.++++| +++||++..
T Consensus 86 PGQLV~YpIldL~~~~~v~~yv~~LE~~vI~~l-~~~gi~a~~------------------------------------- 127 (234)
T PRK14345 86 PGQLVGYPIIKLAEPLDVVDYVRRLEEALIAVC-ADLGLNAGR------------------------------------- 127 (234)
T ss_pred CCeEEEEEEEecCCCCCHHHHHHHHHHHHHHHH-HHcCCceee-------------------------------------
Confidence 99987777766543 222222 23444455 666665321
Q ss_pred ceeEEecCCCCeeeC------CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 207 NIQTEINTREDIVYD------GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 207 g~~a~~~g~~Dl~v~------Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
..+.--++++ ++ ||+-...+.+++...|-=+|=++.|+.-+.
T Consensus 128 -----~~~~~GVWv~~~~~~~~~-KIaaIGv~v~r~vT~HG~ALNV~~DL~~F~ 175 (234)
T PRK14345 128 -----VDGRSGVWVPADGGRPDR-KIAAIGIRVSRGVTMHGFALNCDNDLAAFD 175 (234)
T ss_pred -----cCCCCeEEECCCCCCCcc-eEEEEEeeeccceeecceEEEeCCChHHhc
Confidence 1233344444 68 999999999888777666999999987654
No 13
>PRK14344 lipoate-protein ligase B; Provisional
Probab=98.33 E-value=3.5e-05 Score=68.88 Aligned_cols=144 Identities=16% Similarity=0.187 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcccCC--CCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEEEEEec
Q psy2667 65 TNLALEDWLYKNFDFT--NHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTP 142 (261)
Q Consensus 65 ~nlAlDe~Ll~~~~~~--~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p 142 (261)
..+++-+.+.+....+ .+.++.|=+.+|..++|+..+++.-.. ...+.+++|++=.=||...||+||+|..-.|++
T Consensus 31 ~a~~~Q~~~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~l~~--~~~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~ 108 (223)
T PRK14344 31 DAWKWQKEWQQALIEDPSNPQAVWLLEHQLCYTLGRGASEDNLLF--SLNNPPADVFRIDRGGEVTHHMPGQLVTYLVLD 108 (223)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCeeCCCCCChhhccC--ccccCCCcEEEcCCCceeeEECCCcEEEEEEEE
Confidence 3444444454432221 246788888999999999877542111 112468999999999999999999998878877
Q ss_pred CCCCC--ccch----HHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEecCCC
Q psy2667 143 RERYN--RRNN----LEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTRE 216 (261)
Q Consensus 143 ~~~~~--~~~~----~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~~g~~ 216 (261)
-..++ ...+ -+.++++| +++||++. ..++.-
T Consensus 109 L~~~~~~v~~yv~~lE~~ii~~l-~~~gi~~~------------------------------------------~~~~~~ 145 (223)
T PRK14344 109 LRRFNKDLNWYLRQLEQVLIDVL-ADLGIDGE------------------------------------------RLDGLT 145 (223)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH-HHcCCcee------------------------------------------ecCCCC
Confidence 65432 2222 23344444 55565421 123455
Q ss_pred CeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 217 DIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 217 Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
-+++++| ||+-...+.+++...|.-+|=++.|+..+.
T Consensus 146 GVWv~~~-KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~ 182 (223)
T PRK14344 146 GVWIGNK-KVASIGIGCRRWITQHGFSLNVDCDLEGFN 182 (223)
T ss_pred cEEcCCC-eEEEEeEeEecceeecceEEecCCCccccC
Confidence 6778889 999999999998777666898998876543
No 14
>PRK14346 lipoate-protein ligase B; Provisional
Probab=98.32 E-value=4.4e-05 Score=68.50 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=95.7
Q ss_pred HHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEEEEEecCCCC--Ccc
Q psy2667 72 WLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERY--NRR 149 (261)
Q Consensus 72 ~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p~~~~--~~~ 149 (261)
.+.+....+.+.+|.|-+.+|..++|++.+.+.- +...+++|++=.=||...||+||++-.-.|++-... +..
T Consensus 22 ~~~~~~~~~~~d~llllEHppVyT~G~~~~~~~l-----l~~~~i~v~~tdRGG~iTyHGPGQlV~YpildL~~~~~~vr 96 (230)
T PRK14346 22 AFTAERTPETPDELWICEHPPVYTQGLAGKADHV-----LNPGDIPVVATNRGGQVTYHGPGQVVAYPLIDLRRAGYFVK 96 (230)
T ss_pred HHHHHhhCCCCCEEEEEcCCCCeeCCCCCChhhc-----cCCCCCcEEEeCCCcceeEECCCeEEEEEEEeccccCCCHH
Confidence 3444333334578888999999999999875432 345689999999999999999999877777665542 322
Q ss_pred ch----HHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEecC-------CCCe
Q psy2667 150 NN----LEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINT-------REDI 218 (261)
Q Consensus 150 ~~----~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~~g-------~~Dl 218 (261)
.+ -+.++++| +.+||++...+ ..|+.|.-.. . ...+..+.-++ ..+.
T Consensus 97 ~yv~~lE~~vI~~l-~~~gi~~~~~~------------~~~GVWv~~~--~-------~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PRK14346 97 EYVYRIEEAVIRTL-AHFGVTGHRVA------------GAPGIYVRLD--D-------PFSHAALPQRPQKRGGGAPQPP 154 (230)
T ss_pred HHHHHHHHHHHHHH-HHhCCceEEcC------------CCCEEEEcCC--C-------cccccccccccccccccccccc
Confidence 22 25566677 78898854321 0122221000 0 00000000000 0112
Q ss_pred eeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 219 VYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 219 ~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
..+.+ ||+-...+.+++...|--+|=++.|+..+.
T Consensus 155 ~~~~~-KIaAiGv~v~r~vT~HG~ALNv~~DL~~F~ 189 (230)
T PRK14346 155 FRGLG-KIAALGIKVSRHCTYHGVALNVAMDLEPFS 189 (230)
T ss_pred ccccc-eEEEEeeEEecceeecceeEEcCCChhhhC
Confidence 22357 999999999998887666999999987654
No 15
>PRK14349 lipoate-protein ligase B; Provisional
Probab=98.30 E-value=2.7e-05 Score=69.42 Aligned_cols=139 Identities=18% Similarity=0.170 Sum_probs=94.1
Q ss_pred HHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEEEEEecCCCC
Q psy2667 67 LALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERY 146 (261)
Q Consensus 67 lAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p~~~~ 146 (261)
+++-+.+.+....+.+..|.|-+.+|..++|+..+++.- +.+.+++|++=.=||...||+||+|-.-.|++-...
T Consensus 15 ~~~q~~~~~~~~~~~~d~llllEH~pVyT~G~~~~~~~l-----l~~~~i~vv~t~RGG~iTyHGPGQLV~YpIldL~~~ 89 (220)
T PRK14349 15 WDAMKAFTAARGPGTADEIWLCEHAPVYTLGQAGRPEHL-----LNPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRA 89 (220)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCeeCCCCCChhhc-----cCCCCCcEEEecCCcceEEeCCCcEEEEEEEEcccC
Confidence 333344444444444567888999999999998875422 345689999999999999999999877777665543
Q ss_pred --Cccch----HHHHHHHHHHHhCcc-ccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEecCCCCee
Q psy2667 147 --NRRNN----LEIISRTLEREWNIQ-TEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIV 219 (261)
Q Consensus 147 --~~~~~----~~~i~~aL~~~lGi~-a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~~g~~Dl~ 219 (261)
+...+ -+.++++| +++||+ +.. ..+.--++
T Consensus 90 ~~~vr~yv~~LE~~~I~~l-~~~gi~~a~~------------------------------------------~~~~~GVW 126 (220)
T PRK14349 90 GLYVREYVDMLEQATLATL-RELGLEQACR------------------------------------------KPGAPGIY 126 (220)
T ss_pred CCCHHHHHHHHHHHHHHHH-HHhCCcceee------------------------------------------cCCCCcEE
Confidence 22222 23344555 667765 321 12223344
Q ss_pred eC-----CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHH
Q psy2667 220 YD-----GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLS 254 (261)
Q Consensus 220 v~-----Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~ 254 (261)
++ .+ ||+-...+.+++...|--+|=++.|++-+.
T Consensus 127 v~~~~~~~~-KIaaiGv~v~r~vT~HG~ALNv~~DL~~F~ 165 (220)
T PRK14349 127 VPQPGGELA-KIAALGVKVRNGYAYHGLALNIDMDLSPFL 165 (220)
T ss_pred eCCCCCCCc-eEEEEeeEEecceeecceeEEecCCchhhC
Confidence 43 47 999999999998777666999999987654
No 16
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=98.23 E-value=4e-05 Score=66.73 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=87.2
Q ss_pred CcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEEEEEecCCCC--Cccch----HHHH
Q psy2667 82 HHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERY--NRRNN----LEII 155 (261)
Q Consensus 82 ~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p~~~~--~~~~~----~~~i 155 (261)
+.+|.+=+.+|..++|+..+.+.-.+.. .-.+.++++=.=||+..||+||+|..-.|++-..+ +...+ -+.+
T Consensus 12 ~d~llllEH~pVyT~G~~~~~~~l~~~~--~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~~ 89 (184)
T TIGR00214 12 LDEIMLVEHYPVYTQGQAGKTEHLLFDP--DIPPAEVVQSERGGQVTYHGPGQQVMYVILDLKRFQLDVRWLVTQLEQTV 89 (184)
T ss_pred CCEEEEECCCCCeeCCCCCChhhccCCc--CCCcceEEEeCCCCeeEEECCCeEEEEEEEEchhcCCCHHHHHHHHHHHH
Confidence 4578888899999999987754322111 11244599989999999999999988788776543 22222 2333
Q ss_pred HHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEe-cCCCCeeeCCceeEEeeeEEEe
Q psy2667 156 SRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEI-NTREDIVYDGKYKISGTAAKLG 234 (261)
Q Consensus 156 ~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~-~g~~Dl~v~Gk~KIsGsAqr~~ 234 (261)
+++| +++|++ ++. .+.--++++++ ||+-...+.+
T Consensus 90 I~~l-~~~gi~-------------------------------------------a~~~~~~~GVWv~~~-KIasIGv~v~ 124 (184)
T TIGR00214 90 IITL-AELGIE-------------------------------------------GEPIADATGVWVEGK-KVASLGIRVR 124 (184)
T ss_pred HHHH-HHcCCc-------------------------------------------eEEcCCCCeEEecCC-EEEEEEEEEe
Confidence 4444 555554 322 34556778888 9999999999
Q ss_pred CCeEEEEEEEEeecCHHHHHh
Q psy2667 235 RPSSYHHCTLLVNVNKSRLSQ 255 (261)
Q Consensus 235 ~~~~L~HGsiL~~~d~~~l~~ 255 (261)
++...|--+|=++.|+..+..
T Consensus 125 r~vt~HG~ALNv~~dL~~F~~ 145 (184)
T TIGR00214 125 RGCTFHGLALNINMDLSPFSH 145 (184)
T ss_pred ccEeecceEEEcCCCchHhcc
Confidence 877776668999998877543
No 17
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=97.98 E-value=0.00023 Score=63.26 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=92.7
Q ss_pred CCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecCCceEEEEEecCCCCCc--cc----hHHH
Q psy2667 81 NHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNR--RN----NLEI 154 (261)
Q Consensus 81 ~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p~~~~~~--~~----~~~~ 154 (261)
.++++.+-+.+|..+.|...+++.-+ ...++||+.=-=||-..||+||++-.-.++.-..+.. +. .=+.
T Consensus 40 ~~d~i~lvEHppVyT~G~~~~~e~l~-----~~~~ipVv~~~RGGqvTyHGPGQ~V~Y~ildLkr~~~~vr~~V~~LEqa 114 (221)
T COG0321 40 TPDEIWLVEHPPVYTAGQAGKAEHLL-----MPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQA 114 (221)
T ss_pred CCCeEEEEecCCeeecCccCCHhhcc-----cCCCCCEEEecCCceeEEeCCCcEEEEEEEecccccccHHHHHHHHHHH
Confidence 37889999999999999888775432 3678999999999999999999976656655444321 11 1245
Q ss_pred HHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEEecCCCCeeeC-CceeEEeeeEEE
Q psy2667 155 ISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYD-GKYKISGTAAKL 233 (261)
Q Consensus 155 i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~~~g~~Dl~v~-Gk~KIsGsAqr~ 233 (261)
++++| .++||.++. ..++--++|+ ++ ||+-.+-|.
T Consensus 115 vI~tL-a~~~i~~~~------------------------------------------~~~~~GVwV~~~~-KIAaiGiri 150 (221)
T COG0321 115 VINTL-AEYGIEAER------------------------------------------RPDRPGVWVEEER-KIAAIGIRI 150 (221)
T ss_pred HHHHH-HHcCCcccc------------------------------------------cCCCCeEEecCCc-eEEEEEEEE
Confidence 55565 666665322 1334445666 48 999999999
Q ss_pred eCCeEEEEEEEEeecCHHHHHh
Q psy2667 234 GRPSSYHHCTLLVNVNKSRLSQ 255 (261)
Q Consensus 234 ~~~~~L~HGsiL~~~d~~~l~~ 255 (261)
+++..+|.=.|=++.|++.+..
T Consensus 151 rr~vs~HGlALNv~~DL~~F~~ 172 (221)
T COG0321 151 RRGVTFHGLALNVNMDLSPFNR 172 (221)
T ss_pred ecccceeeeEEeccCCchhccc
Confidence 9999997779999999988754
No 18
>KOG0325|consensus
Probab=97.22 E-value=0.02 Score=50.98 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=104.0
Q ss_pred eeEEEEcCCCCHhHHHHHHHHHHhcc----cCC--CCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCC
Q psy2667 52 QKSVFISQSSNIFTNLALEDWLYKNF----DFT--NHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGG 125 (261)
Q Consensus 52 ~~~v~~~~~~d~~~nlAlDe~Ll~~~----~~~--~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGG 125 (261)
.+.+...+-..=...+++.+-|.++. ..+ ..|++++-+..|+=.+|..-.-..-.+...+.+.|+++.|=.-||
T Consensus 6 ~~~~~r~g~~~y~~~~~lq~rlvr~~~~~~~s~~~~~p~il~~eh~PvYT~G~rt~~~~~~~e~~l~~~ga~~~~t~RGG 85 (226)
T KOG0325|consen 6 GVETVRAGLVHYHRTLALQNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRTLDFTLYDESRLYKLGAEFHKTERGG 85 (226)
T ss_pred eEEEEEcccchHHhhhHHHHHHHHHhhhcccccCCCCCEEeecccCCeeeeccccCCcccchhhhhhhcCceEEEeecCc
Confidence 34555555555668899999999876 223 257888889999999993211111123456788899999999999
Q ss_pred CceeecCCceEEEEEecCCCCCccchHHHHHHHH---HHHhCccccccccccccccCccccccccccchhhHHHHHHhhh
Q psy2667 126 GTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTL---EREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTL 202 (261)
Q Consensus 126 GaV~hd~G~ln~Sli~p~~~~~~~~~~~~i~~aL---~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al 202 (261)
-..||+||++.--.|+.-..|.. ..+..+..| |..+|+++
T Consensus 86 ~iTfHGPgQl~~ypIidL~~f~~--~~r~~Vs~le~~c~~~~i~~----------------------------------- 128 (226)
T KOG0325|consen 86 LITFHGPGQLVAYPIIDLRHFGF--SARCYVSTLEAACPDFGIKG----------------------------------- 128 (226)
T ss_pred eEEEeCCCceEEEEEEEeecccc--chhhHHHHHHhhcccccccc-----------------------------------
Confidence 99999999976655555544321 122222222 23344431
Q ss_pred hhccceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHH
Q psy2667 203 EREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRL 253 (261)
Q Consensus 203 ~~~~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l 253 (261)
+.....--++|++. ||+-..-++.++.-.|.+.|-+++|+.-+
T Consensus 129 -------~~~t~~tgvwV~d~-k~aaiGi~vsr~IT~HGlaLN~~tDL~~f 171 (226)
T KOG0325|consen 129 -------TASTKDTGVWVGDA-KIAAIGIRVSREITYHGLALNVNTDLTYF 171 (226)
T ss_pred -------cccccccceeecCC-eeEEEEEEecCcEeecceEEEeccCcchh
Confidence 11122446778888 99988888888888877788888887544
No 19
>PRK08330 biotin--protein ligase; Provisional
Probab=95.40 E-value=0.14 Score=45.73 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=25.8
Q ss_pred cceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEE
Q psy2667 206 WNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHC 242 (261)
Q Consensus 206 ~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HG 242 (261)
+|+++...-+|||.++|| ||+|.=--...+ .+.||
T Consensus 87 ~g~~~~iKWPNDI~~~~k-Ki~GILiE~~~~-~~viG 121 (236)
T PRK08330 87 FGIEGKIKWPNDVLVNYK-KIAGVLVEGKGD-FVVLG 121 (236)
T ss_pred cCCCccccCCCeEEECCe-EEEEEeEEEeCC-EEEEE
Confidence 455566777999999999 999996655544 45555
No 20
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=95.07 E-value=0.081 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.3
Q ss_pred cceeEEecCCCCeeeCCceeEEee
Q psy2667 206 WNIQTEINTREDIVYDGKYKISGT 229 (261)
Q Consensus 206 ~g~~a~~~g~~Dl~v~Gk~KIsGs 229 (261)
+++++...=+|||.++|| ||+|.
T Consensus 116 ~~~~~~IKWPNDI~~~~k-KiaGI 138 (285)
T PTZ00275 116 FHLVTQIKWINDVLVNYK-KIAGC 138 (285)
T ss_pred hCCceeEECCCccccCCc-EEEEE
Confidence 455577788899999999 99998
No 21
>PRK08477 biotin--protein ligase; Provisional
Probab=94.75 E-value=0.13 Score=45.73 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=22.0
Q ss_pred cceeEEecCCCCeeeCCceeEEeeeEEEeCC
Q psy2667 206 WNIQTEINTREDIVYDGKYKISGTAAKLGRP 236 (261)
Q Consensus 206 ~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~ 236 (261)
+|.++.+.=+|||.++|| |++|.=--...+
T Consensus 89 ~~~~~~iKWPNDI~~~~k-Ki~GIL~E~~~~ 118 (211)
T PRK08477 89 LGSKVWLKWPNDLYLDDK-KIGGVITNKIKN 118 (211)
T ss_pred hCCCeEEcCCCeeEECCc-EEEEEEEeecCC
Confidence 455577777899999999 999985433333
No 22
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=94.54 E-value=0.16 Score=45.85 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.3
Q ss_pred ceeEEecCCCCeeeCCceeEEeeeEE
Q psy2667 207 NIQTEINTREDIVYDGKYKISGTAAK 232 (261)
Q Consensus 207 g~~a~~~g~~Dl~v~Gk~KIsGsAqr 232 (261)
++++.+.=+|||.++|| |++|.=--
T Consensus 96 ~~~~~iKWPNDI~~~~k-KiaGILiE 120 (245)
T PTZ00276 96 GAAVHTKWPNDIIYAGK-KIGGSLIE 120 (245)
T ss_pred CCceEEEcCCeeEECCc-EEEEEEEc
Confidence 34466667899999999 99997543
No 23
>PRK05935 biotin--protein ligase; Provisional
Probab=84.70 E-value=3.7 Score=35.79 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.3
Q ss_pred EEecCCCCeeeCCceeEEeee
Q psy2667 210 TEINTREDIVYDGKYKISGTA 230 (261)
Q Consensus 210 a~~~g~~Dl~v~Gk~KIsGsA 230 (261)
+...=+|||.++|| |++|.=
T Consensus 94 ~~iKWPNDI~~~~k-Ki~GIL 113 (190)
T PRK05935 94 AVIKWPNDVLVHGE-KLCGVL 113 (190)
T ss_pred ccccCCCeEEECCc-EEEEEE
Confidence 45556899999999 999964
No 24
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=82.78 E-value=3.3 Score=37.40 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=18.3
Q ss_pred eEEecCCCCeeeCCceeEEeeeEEE
Q psy2667 209 QTEINTREDIVYDGKYKISGTAAKL 233 (261)
Q Consensus 209 ~a~~~g~~Dl~v~Gk~KIsGsAqr~ 233 (261)
++...=+|||.++|| |++|.=--.
T Consensus 85 ~~~iKWPNDv~~~~k-Kl~GIL~E~ 108 (238)
T COG0340 85 DVRIKWPNDVLLNGK-KLAGILVEA 108 (238)
T ss_pred ccCccCCcceeECCc-ceEEEEEee
Confidence 355566899999999 999974443
No 25
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=82.76 E-value=3.7 Score=36.59 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=16.4
Q ss_pred EEecCCCCeeeCCceeEEeeeE
Q psy2667 210 TEINTREDIVYDGKYKISGTAA 231 (261)
Q Consensus 210 a~~~g~~Dl~v~Gk~KIsGsAq 231 (261)
+...=+|||.++|| ||+|.=-
T Consensus 89 ~~iKWPNDI~~~~k-Ki~GIL~ 109 (237)
T TIGR00121 89 VQVKWPNDILLKDK-KLGGILT 109 (237)
T ss_pred CCCcCCceEEECCe-EEEEEEE
Confidence 44555799999999 9999743
No 26
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=77.91 E-value=7.1 Score=36.24 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.2
Q ss_pred EEecCCCCeeeCCceeEEeee
Q psy2667 210 TEINTREDIVYDGKYKISGTA 230 (261)
Q Consensus 210 a~~~g~~Dl~v~Gk~KIsGsA 230 (261)
+...=+|||.++|| ||+|.=
T Consensus 168 ~~iKWPNDI~~~~k-Kl~GIL 187 (319)
T PRK11886 168 VGLKWPNDIYLNDR-KLAGIL 187 (319)
T ss_pred cceeCCceeeECCe-eEEEEE
Confidence 45556799999999 999964
No 27
>PRK06955 biotin--protein ligase; Provisional
Probab=76.92 E-value=8.9 Score=35.58 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=17.2
Q ss_pred eEEecCCCCeeeCCceeEEeee
Q psy2667 209 QTEINTREDIVYDGKYKISGTA 230 (261)
Q Consensus 209 ~a~~~g~~Dl~v~Gk~KIsGsA 230 (261)
++...=+|||.++|| ||+|.=
T Consensus 132 ~~~iKWPNDIl~~gk-KiaGIL 152 (300)
T PRK06955 132 RIALKWPNDLLIAGR-KLAGIL 152 (300)
T ss_pred ceeeeCCceeeECCc-EEEEEE
Confidence 356666899999999 999964
No 28
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=71.87 E-value=11 Score=38.61 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=18.4
Q ss_pred cceeEEecCCCCeeeCCceeEEeee
Q psy2667 206 WNIQTEINTREDIVYDGKYKISGTA 230 (261)
Q Consensus 206 ~g~~a~~~g~~Dl~v~Gk~KIsGsA 230 (261)
+|+++...=+|||.++|| |++|.=
T Consensus 170 ~g~~v~lKWPNDIl~~gk-KlaGIL 193 (592)
T PRK13325 170 LGLKTQIKWPNDLVVGRD-KLGGIL 193 (592)
T ss_pred cCCCceEeCcceEEECCc-eEEEEE
Confidence 344456666899999999 999964
No 29
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=29.91 E-value=30 Score=27.95 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=20.4
Q ss_pred cCCeeecCCCCCCccccChhhHhhcCCeEEEec
Q psy2667 90 NNPCVVIGRHQNPWQETNLGVLYDEGIEIARRN 122 (261)
Q Consensus 90 ~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~ 122 (261)
+.|||++-+.+.+.+++ ++.|++.++||.+=.
T Consensus 81 ~~P~iIvt~~~~~p~~l-~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 81 NPPCIIVTRGLEPPPEL-IELAEKYNIPLLRTP 112 (127)
T ss_dssp T-S-EEEETTT---HHH-HHHHHHCT--EEEES
T ss_pred CCCEEEEECcCCCCHHH-HHHHHHhCCcEEEcC
Confidence 67899999998876655 678999999998744
No 30
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=28.37 E-value=36 Score=33.96 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=29.6
Q ss_pred hHhhcCCeEEEeccCCCceeecCCceEEEEEecCCCCCccchHHHHHHHHHHHhCcc
Q psy2667 110 VLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQ 166 (261)
Q Consensus 110 ~~~~~gi~VvRR~TGGGaV~hd~G~ln~Sli~p~~~~~~~~~~~~i~~aL~~~lGi~ 166 (261)
.+++.||||+. +||=+||.|.+.+- -- .|.+.|+ .+.+..+|-.+-||.
T Consensus 340 ~L~~~Gvpi~~--~Gghav~iDa~~~l-ph-ip~~~fp----a~al~~~ly~~~GiR 388 (467)
T TIGR02617 340 GLEEIGVVCQQ--AGGHAAFVDAGKLL-PH-IPADQFP----AHALACELYKVAGIR 388 (467)
T ss_pred HHHhCCCcEEe--cCccEEEEehhhhC-CC-CChhhCc----HHHHHHHHHHHcCcc
Confidence 34567999988 99999999975431 11 2333333 233444443566776
No 31
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=22.76 E-value=40 Score=22.86 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=13.2
Q ss_pred hhhHhhcCCeEEEeccCCCceeec
Q psy2667 108 LGVLYDEGIEIARRNSGGGTVYHD 131 (261)
Q Consensus 108 l~~~~~~gi~VvRR~TGGGaV~hd 131 (261)
+..|+.+. .|.+|||+|--.
T Consensus 16 L~aCQaN~----iRDvqGGtVaPS 35 (46)
T PF02402_consen 16 LAACQANY----IRDVQGGTVAPS 35 (46)
T ss_pred HHHhhhcc----eecCCCceECCC
Confidence 34455544 489999998543
No 32
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=22.58 E-value=1.2e+02 Score=21.45 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=20.1
Q ss_pred eeecCCceEEE--------EEecCCCCC--ccchHHHHHHHHHHHhCcc
Q psy2667 128 VYHDSGNLNVT--------FFTPRERYN--RRNNLEIISRTLEREWNIQ 166 (261)
Q Consensus 128 V~hd~G~ln~S--------li~p~~~~~--~~~~~~~i~~aL~~~lGi~ 166 (261)
+||.+||+-|- |++.....+ .+...+-|..+|.+.|.|+
T Consensus 9 ~~hg~GNvR~Gp~GvdLs~Fi~~~rGIdrpAERs~~si~~WLmRG~rvD 57 (58)
T PF09322_consen 9 IYHGEGNVRYGPTGVDLSEFIVTSRGIDRPAERSVPSIKGWLMRGFRVD 57 (58)
T ss_pred EEEcCCceeECCCccchhHeeeeccccCchhhhccHHHHHHHHhccccC
Confidence 57777777652 333333222 2334555666665555543
No 33
>KOG1536|consensus
Probab=21.93 E-value=2.4e+02 Score=29.12 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=24.9
Q ss_pred eeEEecCCCCeeeCC-ceeEEeeeEEE----eCCeEEEEEEEEeec
Q psy2667 208 IQTEINTREDIVYDG-KYKISGTAAKL----GRPSSYHHCTLLVNV 248 (261)
Q Consensus 208 ~~a~~~g~~Dl~v~G-k~KIsGsAqr~----~~~~~L~HGsiL~~~ 248 (261)
+++...=+|||.+++ . ||+|.=.-. .+=.++..+-|=++.
T Consensus 481 IpvrIKWPNDlY~~~~l-KvgGiLv~st~r~n~f~v~iGCGiNVtN 525 (649)
T KOG1536|consen 481 IPVRIKWPNDLYVNGYL-KVGGILVTSTYRSNKFNVSIGCGINVTN 525 (649)
T ss_pred CceeeecCccceeeecc-ccceEEEEeeecCceEEEEEeeeeEecC
Confidence 347777789999998 6 999964332 122344444555543
No 34
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=20.68 E-value=4.8e+02 Score=22.87 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=33.1
Q ss_pred hhhhhccceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeec
Q psy2667 200 RTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNV 248 (261)
Q Consensus 200 ~al~~~~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~ 248 (261)
+.++ +.|+.....| -||-++|| |++=|=.....-...-|--|=+..
T Consensus 93 E~L~-~~gv~~~R~G-DDLy~~~~-KLSVSIAt~s~vS~kIH~GiNV~~ 138 (183)
T PF04017_consen 93 EVLE-EYGVKLRREG-DDLYVNGR-KLSVSIATASPVSTKIHFGINVSS 138 (183)
T ss_dssp HHHH-TTT--EEEET-TEEEETTE-E-EEEEEEEETTEEEEEEEEESS-
T ss_pred HHHH-hcCCceeecc-cceeECCC-EEEEEEEecCcchheEEEeEeecc
Confidence 3443 4487777776 59999999 999999999998888887776653
No 35
>PRK11835 hypothetical protein; Provisional
Probab=20.29 E-value=4.4e+02 Score=21.34 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=54.9
Q ss_pred eeeeecccccccceeEEeeeecCCCCCCCCC----CcccceeEEEEcCCCCHhHHHHHHHHHHhcccCCC-CcEEEEeec
Q psy2667 16 TLQLAVPKLLPSSGVATSRFYSSKPRAPVHN----DETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTN-HHVMLLWRN 90 (261)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~-~p~Lrly~~ 90 (261)
+|||.|=-=+|.++...+.|-.++--+-+.+ +..-+.++++-. |+..+..+=..|-+.+.+-. ...+.=|+.
T Consensus 3 ~lqLSVVHRLPQsYRW~sG~~G~kVEpip~~~~~~dn~LigLkLLSh---dg~~aw~vm~~L~~sL~eiqv~~~ivEweG 79 (114)
T PRK11835 3 NLQLSVVHRLPQSYRWSAGFAGSKVEPIPQNGADGDNSLIGLKLLSH---DGDNAWSVMQKLSQALSDIQVPCSVLECEG 79 (114)
T ss_pred ccEeeEEEecCcceeeccCccCceeeeccCCCCCCccceEEEEeecC---CChhHHHHHHHHHHHHHhhcccceEEEecC
Confidence 6889888889999998888877764443333 223334555544 33333333333333322111 234556888
Q ss_pred CCeeecCCCCCCccccChhhHhhcCCeEEEecc
Q psy2667 91 NPCVVIGRHQNPWQETNLGVLYDEGIEIARRNS 123 (261)
Q Consensus 91 ~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~T 123 (261)
+||+-+-+...-.. +=.+|..|+.|+--+|
T Consensus 80 epCLFv~~~DE~aa---~CrLKn~GVAIAE~~~ 109 (114)
T PRK11835 80 EPCLFVNRQDESAA---TCRLKNFGVAIAEPFS 109 (114)
T ss_pred CceEEEecccchhh---heeeccCcEEEecccc
Confidence 88877765432211 1123455665554433
Done!