Query psy2667
Match_columns 261
No_of_seqs 144 out of 1117
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:06:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c8m_A Lipoate-protein ligase 100.0 2.5E-42 8.7E-47 310.6 18.5 175 50-259 1-179 (262)
2 2e5a_A Lipoyltransferase 1; li 100.0 1.6E-41 5.6E-46 317.2 19.1 166 52-260 4-170 (347)
3 3a7r_A Lipoate-protein ligase 100.0 1E-40 3.5E-45 310.7 19.8 163 52-260 2-168 (337)
4 1vqz_A Lipoate-protein ligase, 100.0 2.6E-40 8.8E-45 308.7 20.5 161 53-259 13-176 (341)
5 2p0l_A Lipoate-protein ligase 100.0 8.1E-39 2.8E-43 292.0 15.1 168 52-256 12-192 (288)
6 2p5i_A BH3822 protein; PFAM030 100.0 8.3E-39 2.8E-43 291.8 15.1 165 52-253 14-190 (288)
7 2qhs_A Lipoyltransferase; glob 100.0 3.6E-33 1.2E-37 248.5 17.4 161 50-257 20-188 (237)
8 1w66_A Lipoyltransferase; lipo 99.9 1.7E-23 5.8E-28 185.9 15.9 155 50-255 11-174 (232)
9 2dxu_A Biotin--[acetyl-COA-car 95.3 0.044 1.5E-06 47.8 7.5 31 207-238 94-124 (235)
10 3bfm_A Biotin protein ligase-l 93.1 0.16 5.6E-06 43.9 6.4 23 210-233 89-111 (235)
11 2eay_A Biotin [acetyl-COA-carb 92.9 0.21 7.2E-06 43.3 6.8 29 207-236 86-114 (233)
12 1bia_A BIRA bifunctional prote 91.8 0.32 1.1E-05 44.0 6.8 22 210-232 169-190 (321)
13 3rkx_A Biotin-[acetyl-COA-carb 91.1 0.51 1.7E-05 42.9 7.4 25 207-232 170-194 (323)
14 3rux_A BIRA bifunctional prote 90.8 0.7 2.4E-05 41.0 7.8 41 207-248 125-165 (270)
15 2ej9_A Putative biotin ligase; 88.2 0.9 3.1E-05 39.4 6.4 40 199-239 77-120 (237)
16 3lvu_A ABC transporter, peripl 27.2 42 0.0014 28.0 3.2 56 109-170 106-162 (258)
No 1
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=100.00 E-value=2.5e-42 Score=310.64 Aligned_cols=175 Identities=26% Similarity=0.471 Sum_probs=152.6
Q ss_pred cceeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCcee
Q psy2667 50 KIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVY 129 (261)
Q Consensus 50 ~~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~ 129 (261)
|..++++.+.+.|+++|||+|++|++++..+.+|+|+||+++|+|+||++|+++.|+|+++|++.||+|+||+|||||||
T Consensus 1 m~~~~~i~~~~~~~~~nlA~ee~Ll~~~~~~~~~~l~l~~~~p~v~lG~~q~~~~e~~~~~~~~~gi~vvrR~sGGgavy 80 (262)
T 2c8m_A 1 MEGRLLLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVY 80 (262)
T ss_dssp CEEEEECCCCTTCHHHHHHHHHHHHHHCCTTSCCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEE
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHcccCCCCcEEEEEcCCCEEEECCCCChhHHhHHHHHHhcCCcEEEECCCCceEE
Confidence 44677777888999999999999999987665799999999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEEecCCCCCc----cchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhc
Q psy2667 130 HDSGNLNVTFFTPRERYNR----RNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLERE 205 (261)
Q Consensus 130 hd~G~ln~Sli~p~~~~~~----~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~ 205 (261)
||+|+||||++.|.+..+. ....+.|+++| +++||++++++..
T Consensus 81 hd~G~l~ys~i~~~~~~~~~~~y~~l~~~ii~~l-~~lGi~~~~~~~~-------------------------------- 127 (262)
T 2c8m_A 81 HDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSL-RILGLDARPGELN-------------------------------- 127 (262)
T ss_dssp ECTTEEEEEEEEECSSCCHHHHHHHHHHHHHHHH-HHTTCCCEECCBC--------------------------------
T ss_pred eCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHH-HHcCCCccccccc--------------------------------
Confidence 9999999999998865432 33567788888 8899987665321
Q ss_pred cceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCC
Q psy2667 206 WNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 259 (261)
Q Consensus 206 ~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~ 259 (261)
+.++++++++||+++|| ||+|+||++.+++++|||||+++.|++.|.++|++
T Consensus 128 -~~~a~~~g~~dv~v~g~-Ki~G~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~ 179 (262)
T 2c8m_A 128 -DVSIPVNKKTDIMAGEK-KIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKV 179 (262)
T ss_dssp -CTTSSSSBTTSEEETTE-EEEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC-
T ss_pred -CCcceECCcCcEEECCe-EEEEeeeEEeCCEEEEEEEEEecCCHHHHHHHhCC
Confidence 00156779999999999 99999999999999999999999999999999985
No 2
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=100.00 E-value=1.6e-41 Score=317.18 Aligned_cols=166 Identities=47% Similarity=0.891 Sum_probs=149.1
Q ss_pred eeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeec
Q psy2667 52 QKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHD 131 (261)
Q Consensus 52 ~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd 131 (261)
+.+++.+.+.||++|||+|++|++++..+.+|+||||+++|+|+||++|+++.|+|+++++++||+|+||.|||||||||
T Consensus 4 ~~~~i~~~~~d~~~nlAlee~Ll~~~~~~~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd 83 (347)
T 2e5a_A 4 SGLILQSISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTVYHD 83 (347)
T ss_dssp -CEEEEESCCCHHHHHHHHHHHHHHCCCTTCCEEEEECCSSEEEECTTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEEC
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhcccCCCCEEEEEcCCCEEEECCCCCchhhhCHHHHHHCCCeEEEECCCCCcEEEC
Confidence 46788899999999999999999988755579999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCCccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEE
Q psy2667 132 SGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTE 211 (261)
Q Consensus 132 ~G~ln~Sli~p~~~~~~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~ 211 (261)
+|++|||++.|.+.++.....+.++++| +.+|. +++++
T Consensus 84 ~G~l~ys~i~~~~~~~~~~~~~~ii~~L-~~lG~-----------------------------------------~i~a~ 121 (347)
T 2e5a_A 84 MGNINLTFFTTKKKYDRMENLKLVVRAL-KAVHP-----------------------------------------HLDVQ 121 (347)
T ss_dssp TTEEEEEEEECGGGCCHHHHHHHHHHHH-HHHST-----------------------------------------TCCEE
T ss_pred CCcEEEEEEeccccCCHHHHHHHHHHHH-HHhCC-----------------------------------------ceEEE
Confidence 9999999999987666555678888887 66661 13377
Q ss_pred ecCCCCeeeCC-ceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667 212 INTREDIVYDG-KYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 260 (261)
Q Consensus 212 ~~g~~Dl~v~G-k~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~ 260 (261)
++++|||+++| | ||+|+||++.+++++|||||+++.|++.|.++|+..
T Consensus 122 ~~g~~di~v~g~~-KIsG~Aq~~~~~~~lhhgtll~~~d~~~l~~~l~~~ 170 (347)
T 2e5a_A 122 ATKRFDLLLDGQF-KISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSP 170 (347)
T ss_dssp ECTTSCEEETTTE-EEECEEEEECSSCEEEEEEEESSCCHHHHHHHTSCC
T ss_pred ECCCCcEEECCCc-EEEEEeEEeeCCeEEEEEEEEEecCHHHHHHHHccC
Confidence 88999999998 9 999999999999999999999999999999999853
No 3
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=100.00 E-value=1e-40 Score=310.69 Aligned_cols=163 Identities=36% Similarity=0.673 Sum_probs=147.3
Q ss_pred eeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeec
Q psy2667 52 QKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHD 131 (261)
Q Consensus 52 ~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd 131 (261)
+++++.+.+.||++|||+||+|++++.. ++++|+||+++|+|+||++|+++.|+|+++++++||+|+||.|||||||||
T Consensus 2 ~~r~i~~~~~d~~~nlA~ee~Ll~~~~~-~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd 80 (337)
T 3a7r_A 2 TLRLLISDSYDPWFNLAVEECIFRQMPA-TQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHD 80 (337)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEEC
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCEEEECCCCChhHhhCHHHHHHcCCeEEEEcCCCccEEEC
Confidence 4789999999999999999999998864 479999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCCccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhccceeEE
Q psy2667 132 SGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTE 211 (261)
Q Consensus 132 ~G~ln~Sli~p~~~~~~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~a~ 211 (261)
+|++|||++.|.+.++.....+.++++| +.+||+ ++
T Consensus 81 ~G~l~ys~i~~~~~~~y~~l~~~ii~~L-~~lGi~-------------------------------------------a~ 116 (337)
T 3a7r_A 81 LGNTCFTFMAGKPEYDKTISTSIVLNAL-NALGVS-------------------------------------------AE 116 (337)
T ss_dssp TTEEEEEEEEETTTCCHHHHHHHHHHHH-HHTTCC-------------------------------------------EE
T ss_pred CCcEEEEEEECCcccCHHHHHHHHHHHH-HHcCCe-------------------------------------------EE
Confidence 9999999999987655555667777777 556654 66
Q ss_pred ecCCCCeee---CC-ceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCCC
Q psy2667 212 INTREDIVY---DG-KYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 260 (261)
Q Consensus 212 ~~g~~Dl~v---~G-k~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~~ 260 (261)
+++++||++ +| | ||+|+||++.+++++|||||+++.|++.|.++|+..
T Consensus 117 ~~g~~di~v~~~~g~r-KIsG~Aqr~~~~~~lhhgtll~~~dl~~l~~~l~~~ 168 (337)
T 3a7r_A 117 ASGRNDLVVKTVEGDR-KVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPD 168 (337)
T ss_dssp EETTTEEEECCTTSCE-EEEEEEEEECSSEEEEEEEEESSCCHHHHHHHTSCC
T ss_pred ECCCCcEEEEeCCCce-EEEEEEEEEECCEEEEEEEEEecCCHHHHHHHhcCC
Confidence 678999999 89 9 999999999999999999999999999999999853
No 4
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=100.00 E-value=2.6e-40 Score=308.68 Aligned_cols=161 Identities=34% Similarity=0.556 Sum_probs=142.6
Q ss_pred eEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCceeecC
Q psy2667 53 KSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVYHDS 132 (261)
Q Consensus 53 ~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~hd~ 132 (261)
++.+++.+.||+.|||+||+|++++.. .+|+|+||+++|+|+||++|+++.|+|++++++.||+|+||.|||||||||+
T Consensus 13 ~~~~~~~~~d~~~nlAlee~Ll~~~~~-~~~~L~l~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~sGGgaVyHd~ 91 (341)
T 1vqz_A 13 MKYIINHSNDTAFNIALEEYAFKHLLD-EDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDL 91 (341)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHCTT-CSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECT
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHhcCC-CCCEEEEEcCCCEEEECCCCChhhhhCHHHHHHcCCcEEEECCCCCeEEECC
Confidence 567889999999999999999998764 5799999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEecCCCC-C--ccchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhhcccee
Q psy2667 133 GNLNVTFFTPRERY-N--RRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQ 209 (261)
Q Consensus 133 G~ln~Sli~p~~~~-~--~~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~~~g~~ 209 (261)
|++|||++.|.+.. + .....+.++++| +.+| ++
T Consensus 92 G~l~ys~i~~~~~~~~~~y~~l~~~ii~aL-~~lG-------------------------------------------i~ 127 (341)
T 1vqz_A 92 NNLNYTIISKEDENKAFDFKSFSTPVINTL-AQLG-------------------------------------------VK 127 (341)
T ss_dssp TEEEEEEEEECCTTCCCSHHHHHHHHHHHH-HHTT-------------------------------------------CC
T ss_pred CceEEEEEEcCcccCCccHHHHHHHHHHHH-HHcC-------------------------------------------Ce
Confidence 99999999987653 2 223345555555 4444 44
Q ss_pred EEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhcCC
Q psy2667 210 TEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 259 (261)
Q Consensus 210 a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L~~ 259 (261)
++++|++||+++|| ||+|+||++.+++++|||||+++.|++.|.++|++
T Consensus 128 a~~~gr~Di~v~gr-KIsG~Aqr~~~~~~lhhgtllvd~Dl~~~~~~L~~ 176 (341)
T 1vqz_A 128 AEFTGRNDLEIDGK-KFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKV 176 (341)
T ss_dssp EEEETTTEEEETTE-EEEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCC
T ss_pred EEECCCCCEEEeCE-EEEEEEEEEECCEEEEEEEEEecCCHHHHHHHhCC
Confidence 77789999999999 99999999999999999999999999999999984
No 5
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=100.00 E-value=8.1e-39 Score=291.98 Aligned_cols=168 Identities=19% Similarity=0.234 Sum_probs=141.4
Q ss_pred eeEEEEc---CCCCHhHHHHHHHHHHhcccCC-CCcEEEEeecCCeeecCCC--CCCccccChhhHhhcCCeEEEeccCC
Q psy2667 52 QKSVFIS---QSSNIFTNLALEDWLYKNFDFT-NHHVMLLWRNNPCVVIGRH--QNPWQETNLGVLYDEGIEIARRNSGG 125 (261)
Q Consensus 52 ~~~v~~~---~~~d~~~nlAlDe~Ll~~~~~~-~~p~Lrly~~~p~VvlG~~--Q~~~~evnl~~~~~~gi~VvRR~TGG 125 (261)
.++++.. ...||++|||+|++|++.+..+ .+++|+||+++|+|+||++ |+++.|+|++++++.||+|+||+|||
T Consensus 12 ~~r~i~~~~~~~~d~~~nlAlde~Ll~~~~~g~~~~~L~l~~~~p~vtlG~~~~q~~~~e~~~~~~~~~gi~vvRR~sGG 91 (288)
T 2p0l_A 12 PVSIFKDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGG 91 (288)
T ss_dssp CEEEEECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCC
T ss_pred cEEEEECCCCCCCCHHHHHHHHHHHHHhhhcCCCCCEEEEecCCCEEEECCCCCCCcchhhhHHHHHHCCCEEEEEcCCC
Confidence 4666665 3479999999999999987543 4799999999999999999 99999999999999999999999999
Q ss_pred CceeecCCceEEEEEecCC-C--CCc----cchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHH
Q psy2667 126 GTVYHDSGNLNVTFFTPRE-R--YNR----RNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEII 198 (261)
Q Consensus 126 GaV~hd~G~ln~Sli~p~~-~--~~~----~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~ 198 (261)
||||||+|++|||+++|.+ . ++. ....+.|+++| +.+||+++..+..
T Consensus 92 gaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL-~~lGi~a~~~~~~------------------------- 145 (288)
T 2p0l_A 92 LAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIF-SDFYQPIEHFEVE------------------------- 145 (288)
T ss_dssp SCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHT-TTSCSCCEECCCT-------------------------
T ss_pred CeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHH-HHcCCcEEEcccc-------------------------
Confidence 9999999999999999876 3 332 23456777777 7788876543100
Q ss_pred HhhhhhccceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhh
Q psy2667 199 SRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQS 256 (261)
Q Consensus 199 ~~al~~~~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~ 256 (261)
+ .+|+|+|||+++|| ||+|+||++.+++++|||+|+++.|++.+.++
T Consensus 146 --------~--~~c~g~~Dl~v~gr-KI~G~Aqr~~~~~~lhh~sl~v~~dl~~~~~~ 192 (288)
T 2p0l_A 146 --------T--SYCPGKFDLSINGK-KFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQM 192 (288)
T ss_dssp --------T--SSSCCTTCEEETTE-EEEEEEEEEETTEEEEEEEEECSSCHHHHHHH
T ss_pred --------C--CCCCCCccEEECCE-EEEEEeEEEeCCEEEEEEEEEecCCHHHHHHH
Confidence 1 35689999999999 99999999999999999999999999985443
No 6
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=100.00 E-value=8.3e-39 Score=291.77 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=138.7
Q ss_pred eeEEEEcCC----CCHhHHHHHHHHHHhcccCC-CCcEEEEeecCCeeecCCC--CCCccccChhhHhhcCCeEEEeccC
Q psy2667 52 QKSVFISQS----SNIFTNLALEDWLYKNFDFT-NHHVMLLWRNNPCVVIGRH--QNPWQETNLGVLYDEGIEIARRNSG 124 (261)
Q Consensus 52 ~~~v~~~~~----~d~~~nlAlDe~Ll~~~~~~-~~p~Lrly~~~p~VvlG~~--Q~~~~evnl~~~~~~gi~VvRR~TG 124 (261)
+++++.+.. .||++|||+|++|++.+..+ .+++||||+++|+|+||++ |+++.|+|++++++.||+|+||+||
T Consensus 14 ~~~~i~~~~~~~~~d~~~nlA~de~Ll~~~~~g~~~~~l~l~~~~p~vtlG~~~~q~~~~e~~~~~~~~~gi~vvRR~sG 93 (288)
T 2p5i_A 14 PWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRNSG 93 (288)
T ss_dssp CCEEEEESSCCTTSCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEESSC
T ss_pred cEEEEECCCcCCCCCHHHhHHHHHHHHHHhhcCCCCCEEEEecCCCEEEECCCcCCCccHhhhHHHHHHcCCeEEEEcCC
Confidence 577777665 69999999999999987654 4799999999999999999 9999999999999999999999999
Q ss_pred CCceeecCCceEEEEEecCCC-CCc----cchHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHH
Q psy2667 125 GGTVYHDSGNLNVTFFTPRER-YNR----RNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIIS 199 (261)
Q Consensus 125 GGaV~hd~G~ln~Sli~p~~~-~~~----~~~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~ 199 (261)
|||||||+|++|||++.|.+. ++. ....+.|+++| +.+||+++..+..
T Consensus 94 GgaVyHdpG~l~ysli~~~~~~~~v~~~y~~l~~~ii~~L-~~lGi~a~~~~~~-------------------------- 146 (288)
T 2p5i_A 94 GLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMF-QDHREQIEAREIV-------------------------- 146 (288)
T ss_dssp CCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHHHHHHT-C---CCCEECCCT--------------------------
T ss_pred CceEEECCCcEEEEEEEcCCCCCCHHHHHHHHHHHHHHHH-HHcCCcEEEeccc--------------------------
Confidence 999999999999999998763 332 23456677777 7788876543100
Q ss_pred hhhhhccceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHH
Q psy2667 200 RTLEREWNIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRL 253 (261)
Q Consensus 200 ~al~~~~g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l 253 (261)
+ .+|+|+|||+++|| ||+|+||++.+++++|||+|+++.|++.+
T Consensus 147 -------~--~~c~g~~dl~v~gr-KI~G~Aqr~~~~~~lhh~~l~v~~dl~~~ 190 (288)
T 2p5i_A 147 -------G--SYCPGSYDLSIDGK-KFAGISQRRIRGGVAVQIYLCVSGSGAER 190 (288)
T ss_dssp -------T--SSSCCTTCEEETTE-EEEEEEEEEETTEEEEEEEEECSSCHHHH
T ss_pred -------c--CCCCCCccEEECCE-EEEEEEEEEeCCEEEEEEEEEecCCHHHH
Confidence 1 34689999999999 99999999999999999999999999984
No 7
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=100.00 E-value=3.6e-33 Score=248.50 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=134.2
Q ss_pred cceeEEEEcCCCCHhHHHHHHHHHHhcccCC-CCcEEEEeecCCeeecCCCCCCccc-cChhhHhhcCCeEEEeccCCCc
Q psy2667 50 KIQKSVFISQSSNIFTNLALEDWLYKNFDFT-NHHVMLLWRNNPCVVIGRHQNPWQE-TNLGVLYDEGIEIARRNSGGGT 127 (261)
Q Consensus 50 ~~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~-~~p~Lrly~~~p~VvlG~~Q~~~~e-vnl~~~~~~gi~VvRR~TGGGa 127 (261)
+|+++++.....+...|||+|++|++....+ .+++|+||+++|++++|++|+++.+ +|.++|++.||+|+||.||||+
T Consensus 20 ~~~~~~~~~g~~~y~~~~a~~e~l~~~~~~g~~~~~L~l~eh~p~~tlG~~q~~~~~~~~~~~l~~~gi~vvrr~rGGga 99 (237)
T 2qhs_A 20 HMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDV 99 (237)
T ss_dssp -CEEEEEEEEECCHHHHHHHHHHHHHHHHTTCSCCEEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEEEECCSSSSE
T ss_pred CCeEEEEeCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCEEEeCCCCCchhcccCHHHHHhcCCeEEEEcCCCEE
Confidence 4567777777789999999999999986544 4789999999999999999999986 8999999999999999999999
Q ss_pred eeecCCce-EEEEEecCCCCCccc----hHHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhh
Q psy2667 128 VYHDSGNL-NVTFFTPRERYNRRN----NLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTL 202 (261)
Q Consensus 128 V~hd~G~l-n~Sli~p~~~~~~~~----~~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al 202 (261)
||||+|++ +|+++.+.. +... ..+.++++| +++||+
T Consensus 100 vyH~pGqlv~Y~i~~~~~--~~~~~~~~l~~~ii~~L-~~lGi~------------------------------------ 140 (237)
T 2qhs_A 100 TYHGPGQLVGYPIFPVGR--EVRRFLRQIEEAIVRVA-AGYGIS------------------------------------ 140 (237)
T ss_dssp EEECTTEEEEEEECCCTT--CHHHHHHHHHHHHHHHH-HHTTCC------------------------------------
T ss_pred EEECCCCEEEEEEEECCc--CHHHHHHHHHHHHHHHH-HHcCCc------------------------------------
Confidence 99999997 677776544 3322 234555666 556665
Q ss_pred hhccceeEEe-cCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHhhc
Q psy2667 203 EREWNIQTEI-NTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 257 (261)
Q Consensus 203 ~~~~g~~a~~-~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~~L 257 (261)
++. ++++||+++|| ||+|+||++.++..+||++|+++.|++.+.++.
T Consensus 141 -------a~~~~g~~dv~v~gr-KIag~g~~~~~~~~~hg~aLnv~~dl~~f~~i~ 188 (237)
T 2qhs_A 141 -------AYPTPGYAGVWVGED-KLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIV 188 (237)
T ss_dssp -------CBCCSSSSSEEETTE-EEEEEEEEEETTEEEEEEEEESSCCGGGGGGBC
T ss_pred -------EEEeCCCCCEEECCc-EEEEEeEEeeCCeEEEeEEEecccChHHhcCcC
Confidence 333 67999999999 999999999999999999999999998876543
No 8
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=99.91 E-value=1.7e-23 Score=185.86 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=120.6
Q ss_pred cceeEEEEcCCCCHhHHHHHHHHHHhcccCCCCcEEEEeecCCeeecCCCCCCccccChhhHhhcCCeEEEeccCCCcee
Q psy2667 50 KIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDEGIEIARRNSGGGTVY 129 (261)
Q Consensus 50 ~~~~~v~~~~~~d~~~nlAlDe~Ll~~~~~~~~p~Lrly~~~p~VvlG~~Q~~~~evnl~~~~~~gi~VvRR~TGGGaV~ 129 (261)
|+.+++......+-...+++++++++....+.+++|+||+++|++++|++|+++. + .+.||+|+||.+|||++|
T Consensus 11 ~~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~~~~d~l~l~eh~pv~TiG~~q~~~~-l-----~~~gi~Vvr~~rGG~~tY 84 (232)
T 1w66_A 11 LSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHE-R-----PIDGTPVVDTDRGGKITW 84 (232)
T ss_dssp CSCCEEEEEEECCHHHHHHHHHHHHHHHHTTCCCEEEEEECCSEEEECTTCCGGG-S-----CTTCCCCEECSSSSSEEE
T ss_pred CceEEEEeCCCcCHHHHHHHHHHHHHHhhCCCCCEEEEEecCCEEEeCCCCChhh-h-----cccCCeEEEecCCCceEE
Confidence 4456666555677788999999999987655678999999999999999999864 2 256999999999999999
Q ss_pred ecCCceEEEEEecCCC-CCccch----HHHHHHHHHHHhCccccccccccccccCccccccccccchhhHHHHHHhhhhh
Q psy2667 130 HDSGNLNVTFFTPRER-YNRRNN----LEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLER 204 (261)
Q Consensus 130 hd~G~ln~Sli~p~~~-~~~~~~----~~~i~~aL~~~lGi~a~~~~~~di~~~~~~~~~~p~~~s~~~~~~~~~~al~~ 204 (261)
||||++++.+|++.+. .+...+ .+.++++| +++||+
T Consensus 85 HgPGQlv~Y~Il~l~~~~~v~~~v~~le~~vI~~L-~~~Gi~-------------------------------------- 125 (232)
T 1w66_A 85 HGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVC-ADLGLH-------------------------------------- 125 (232)
T ss_dssp ECTTEEEEEEECBBCSSCCHHHHHHHHHHHHHHHH-HHTTCC--------------------------------------
T ss_pred ECCCCeEEEEEEECCCCCCHHHHHHHHHHHHHHHH-HHcCCC--------------------------------------
Confidence 9999999999987443 222222 34555555 555554
Q ss_pred ccceeEEe-cCCCCeeeC---CceeEEeeeEEEeCCeEEEEEEEEeecCHHHHHh
Q psy2667 205 EWNIQTEI-NTREDIVYD---GKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQ 255 (261)
Q Consensus 205 ~~g~~a~~-~g~~Dl~v~---Gk~KIsGsAqr~~~~~~L~HGsiL~~~d~~~l~~ 255 (261)
++. ++++|++++ || ||+|.+++.+++..+|+.+|.++.|++.+..
T Consensus 126 -----a~~~~g~~gV~v~~~~~r-KIaaig~r~~~~vt~HG~aLNv~~dL~~f~~ 174 (232)
T 1w66_A 126 -----AGRVDGRSGVWLPGRPAR-KVAAIGVRVSRATTLHGFALNCDCDLAAFTA 174 (232)
T ss_dssp -----CEEETTEEEEEECSSSCE-EEEEEEEEEETTEEEEEEEEESSCCCGGGGG
T ss_pred -----eEecCCCCeEEecCCCCC-EEEEeeeeeeCCEEEcceEEecCcChHHhcC
Confidence 443 778999999 99 9999999999998886668888888766543
No 9
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=95.28 E-value=0.044 Score=47.82 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=22.3
Q ss_pred ceeEEecCCCCeeeCCceeEEeeeEEEeCCeE
Q psy2667 207 NIQTEINTREDIVYDGKYKISGTAAKLGRPSS 238 (261)
Q Consensus 207 g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~ 238 (261)
|+++...=+|||.++|| ||+|.=--.....+
T Consensus 94 ~~~~~iKWPNDi~~~gk-Kl~GIL~E~~~~~v 124 (235)
T 2dxu_A 94 SIDGRIKWPNDVLVNYK-KIAGVLVEGKGDKI 124 (235)
T ss_dssp TCCCEEETTTEEEETTE-EEEEEEEEECSSCE
T ss_pred CCCeeeeCCCEEEECCE-EEEEEEEeecCCEE
Confidence 44566777899999999 99998554433333
No 10
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=93.13 E-value=0.16 Score=43.95 Aligned_cols=23 Identities=4% Similarity=0.094 Sum_probs=18.6
Q ss_pred EEecCCCCeeeCCceeEEeeeEEE
Q psy2667 210 TEINTREDIVYDGKYKISGTAAKL 233 (261)
Q Consensus 210 a~~~g~~Dl~v~Gk~KIsGsAqr~ 233 (261)
+...=+|||.++|| ||+|.=--.
T Consensus 89 ~~iKWPNDI~~~gk-Kl~GIL~E~ 111 (235)
T 3bfm_A 89 VHLDWNGALRINGA-RCGRLRIAA 111 (235)
T ss_dssp EEECTTSEEEETTE-EEEEEEEEE
T ss_pred eEecCCCeEEECCe-EEEEEEEEe
Confidence 56667899999999 999985444
No 11
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=92.90 E-value=0.21 Score=43.31 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=21.7
Q ss_pred ceeEEecCCCCeeeCCceeEEeeeEEEeCC
Q psy2667 207 NIQTEINTREDIVYDGKYKISGTAAKLGRP 236 (261)
Q Consensus 207 g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~ 236 (261)
|+++...=+|||.++|| ||+|.=--....
T Consensus 86 ~~~~~iKWPNDI~~~gk-Kl~GIL~E~~~~ 114 (233)
T 2eay_A 86 EIPFSLKWPNDVYFQEK-KVSGVLCELSKD 114 (233)
T ss_dssp CCCCEEETTTEEEETTE-EEEEEEEEEETT
T ss_pred CCCccEeCcceEEECCe-EEEEEEEEeecC
Confidence 44566777899999999 999985544433
No 12
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=91.75 E-value=0.32 Score=43.99 Aligned_cols=22 Identities=14% Similarity=0.367 Sum_probs=17.7
Q ss_pred EEecCCCCeeeCCceeEEeeeEE
Q psy2667 210 TEINTREDIVYDGKYKISGTAAK 232 (261)
Q Consensus 210 a~~~g~~Dl~v~Gk~KIsGsAqr 232 (261)
+...=+|||.++|| ||+|.=--
T Consensus 169 ~~iKWPNDi~~~g~-Kl~GIL~E 190 (321)
T 1bia_A 169 VRVKWPNDLYLQDR-KLAGILVE 190 (321)
T ss_dssp CEEETTTEEEETTE-EEEEEEEE
T ss_pred ccEeCcceeeECCe-eEEEEEEE
Confidence 55666899999999 99998433
No 13
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=91.09 E-value=0.51 Score=42.92 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=20.0
Q ss_pred ceeEEecCCCCeeeCCceeEEeeeEE
Q psy2667 207 NIQTEINTREDIVYDGKYKISGTAAK 232 (261)
Q Consensus 207 g~~a~~~g~~Dl~v~Gk~KIsGsAqr 232 (261)
|+++...=+|||.++|| ||+|.=--
T Consensus 170 ~~~~~iKWPNDI~~~gk-Kl~GIL~E 194 (323)
T 3rkx_A 170 QDEVKVKWPNDIYIDNG-KVCGFLTE 194 (323)
T ss_dssp SSCEEEETTTEEEETTE-EEEEEEEE
T ss_pred CCceEEeCCCeEEECCE-EEEEEEeE
Confidence 45567777899999999 99997443
No 14
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=90.76 E-value=0.7 Score=40.97 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=26.6
Q ss_pred ceeEEecCCCCeeeCCceeEEeeeEEEeCCeEEEEEEEEeec
Q psy2667 207 NIQTEINTREDIVYDGKYKISGTAAKLGRPSSYHHCTLLVNV 248 (261)
Q Consensus 207 g~~a~~~g~~Dl~v~Gk~KIsGsAqr~~~~~~L~HGsiL~~~ 248 (261)
|+++...=+|||.++|| ||+|.=--.....++.---|=++.
T Consensus 125 ~~~~~iKWPNDI~~~gk-Kl~GIL~E~~~~~vViGIGiNv~~ 165 (270)
T 3rux_A 125 PAETGLKWPNDVLARGG-KLAGILAEVAQPFVVLGVGLNVTQ 165 (270)
T ss_dssp CSSCEEETTTEEEETTE-EEEEEEEEEETTEEEEEEEEESSC
T ss_pred CCceEEECCCeEEECCE-EEEEEEEEeeCCeEEEEEEEeccC
Confidence 44567777899999999 999985544444443333344443
No 15
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=88.23 E-value=0.9 Score=39.38 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=26.1
Q ss_pred HhhhhhccceeEEecCCCCeeeCC----ceeEEeeeEEEeCCeEE
Q psy2667 199 SRTLEREWNIQTEINTREDIVYDG----KYKISGTAAKLGRPSSY 239 (261)
Q Consensus 199 ~~al~~~~g~~a~~~g~~Dl~v~G----k~KIsGsAqr~~~~~~L 239 (261)
.+++++..|.++...=+|||.++| | ||+|.=--.....++
T Consensus 77 ~~al~~~~~~~~~iKWPNDi~~~g~~~~k-Kl~GIL~E~~~~~vV 120 (237)
T 2ej9_A 77 IEVLKNYVDKELGLKFPNDIMVKVNDNYK-KLGGILTELTDDYMI 120 (237)
T ss_dssp HHHHTTTCCSCEEEETTTEEEEEETTEEE-EEEEEEEEECSSEEE
T ss_pred HHHHHHhhCCCcceeCCCEEEECCCcCcc-EeeEEEEecCCCeEE
Confidence 344433235557777789999999 9 999985444333333
No 16
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=27.16 E-value=42 Score=28.01 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=35.9
Q ss_pred hhHhhcCCeEEEeccCCCceeecCC-ceEEEEEecCCCCCccchHHHHHHHHHHHhCcccccc
Q psy2667 109 GVLYDEGIEIARRNSGGGTVYHDSG-NLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEIN 170 (261)
Q Consensus 109 ~~~~~~gi~VvRR~TGGGaV~hd~G-~ln~Sli~p~~~~~~~~~~~~i~~aL~~~lGi~a~~~ 170 (261)
+.+++.|++. .|||- .--.| .+.+++.++...-......+.|.+.| +++||++++.
T Consensus 106 ~LL~eaG~~~----~~~g~-~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l-~~iGi~v~i~ 162 (258)
T 3lvu_A 106 QFLEQAGFRI----EQGQL-LGPDGAPLALRFLLRQGDSDMQTVLEIYTRAL-ERLGIAAQIE 162 (258)
T ss_dssp HHHHHTTCEE----ETTEE-ECTTSSBCCCEEEEETTCHHHHHHHHHHHHHH-HTTTCCCEEE
T ss_pred HHHHHcCCEe----CCCcE-ECCCCcEEEEEEEecCCChhHHHHHHHHHHHH-HHcCCeeEEE
Confidence 4566789984 25553 33235 38888888764322344567787778 7799997664
Done!