RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2667
(261 letters)
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 129 bits (324), Expect = 5e-37
Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 37/208 (17%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
+ + N +LA ++ +Y++F + + ++ +R++ V+IG Q +E +L +
Sbjct: 6 LLLETPGNTRMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKN 65
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTL---EREWNIQTEINT 171
GI +ARR +GGG VYHD G+LN + + + + ++ + R +
Sbjct: 66 GIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGE 125
Query: 172 REDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAA 231
D+ K + G+ KI G A
Sbjct: 126 LNDVSIPVNKK----------------------------------TDIMAGEKKIMGAAG 151
Query: 232 KLGRPSSYHHCTLLVNVNKSRLSQSLHH 259
+ + + H +LV+ + LS L
Sbjct: 152 AMRKGAKLWHAAMLVHTDLDMLSAVLKV 179
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 241
Score = 122 bits (308), Expect = 1e-34
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 43/205 (20%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
I+ S++ N+ALE++ +K+ + LLW N P +++GRHQN +E N + +
Sbjct: 3 YIINHSNDTAFNIALEEYAFKHLL-DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVREN 61
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTRED 174
GIE+ RR SGGG VYHD NLN T + +
Sbjct: 62 GIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAF------------------------- 96
Query: 175 IVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLG 234
++++ + TL + ++ E R D+ DGK K G A
Sbjct: 97 ---------------DFKSFSTPVINTL-AQLGVKAEFTGRNDLEIDGK-KFCGNAQAYI 139
Query: 235 RPSSYHHCTLLVNVNKSRLSQSLHH 259
HH LL +V+ S L+ +L
Sbjct: 140 NGRIMHHGCLLFDVDLSVLANALKV 164
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 246
Score = 121 bits (304), Expect = 4e-34
Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 55 VFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQNPWQETNLGVLYDE 114
+ IS S + + NLA+E+ +++ V+ LWRN VVIGR QNPW+E N + ++
Sbjct: 5 LLISDSYDPWFNLAVEECIFRQMP-ATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEED 63
Query: 115 GIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEINTRED 174
+ +ARR+SGGG V+HD GN TF + Y++ + I+ + E + R D
Sbjct: 64 NVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTISTSIVLNA-LNALGVSAEASGRND 122
Query: 175 IVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEINTREDIVYDGKYKISGTAAKLG 234
+V +G K+SG+A +
Sbjct: 123 LVVK----------------------------------------TVEGDRKVSGSAYRET 142
Query: 235 RPSSYHHCTLLVNVNKSRLSQSLHH 259
+ +HH TLL+N + SRL+ L+
Sbjct: 143 KDRGFHHGTLLLNADLSRLANYLNP 167
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 121 bits (304), Expect = 9e-34
Identities = 30/215 (13%), Positives = 60/215 (27%), Gaps = 49/215 (22%)
Query: 54 SVFISQSSNIFTNLALEDWLYKNFDF-TNHHVMLLWRNNPCVVIGRHQ--NPWQETNLGV 110
+++ + + + + + ++ +W V++G P E
Sbjct: 14 KDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKE 73
Query: 111 LYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQTEIN 170
+ G E RN GG V D G LN + P + + +
Sbjct: 74 IISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISD----------------- 116
Query: 171 TREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTE--------INTREDIVYDG 222
Y + I ++ E + D+ +G
Sbjct: 117 -------------------GYLIMVDFIRSIF-SDFYQPIEHFEVETSYCPGKFDLSING 156
Query: 223 KYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSL 257
K K +G A + + L V ++ SQ +
Sbjct: 157 K-KFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMI 190
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 107 bits (267), Expect = 2e-28
Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 56/220 (25%)
Query: 56 FISQSS-----NIFTNLALEDWLYKNF-DFTNHHVMLLWRNNPCVVIGRHQN--PWQETN 107
F+ +S + A +D L + + + W ++ VV+G + P +
Sbjct: 4 FLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAG 63
Query: 108 LGVLYDEGIEIARRNSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEIISRTLEREWNIQT 167
+ L ++ RNSGG V DSG LN++ E+ ++
Sbjct: 64 IEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEKGFSIDD---------------- 107
Query: 168 EINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREWNIQTEI--------NTREDIV 219
Y+ E+I ++ Q E D+
Sbjct: 108 ----------------------GYELMYELICSMF-QDHREQIEAREIVGSYCPGSYDLS 144
Query: 220 YDGKYKISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 259
DGK K +G + + R L V+ + + ++ +
Sbjct: 145 IDGK-KFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRT 183
>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium,
strain lt2 [TaxId: 90371]}
Length = 379
Score = 28.4 bits (62), Expect = 0.88
Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 8/135 (5%)
Query: 41 RAPVHNDETKIQKSVFISQSSNIFTNLALEDWLYKNFDFTNHHVMLLWRNNPCVVIGRHQ 100
+ + T + + FI + I +L + NN R
Sbjct: 191 QMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVNNIRNSGLRRS 250
Query: 101 NPWQETNLGVLYDEGIEIARR------NSGGGTVYHDSGNLNVTFFTPRERYNRRNNLEI 154
++ + G + E + ++ G T+ SGN V + + N
Sbjct: 251 --FETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSD 308
Query: 155 ISRTLEREWNIQTEI 169
IS ++ + ++
Sbjct: 309 ISLYAHNLYSGEVKL 323
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 24.3 bits (53), Expect = 6.5
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 145 RYNRRNNLEI--ISRTLEREWNI 165
R+ + + LE+ + LER+WN+
Sbjct: 50 RHRKSSTLEVKDVQLHLERQWNM 72
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 211
Score = 25.3 bits (54), Expect = 7.6
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 147 NRRNNLEIISRTLEREWNIQTEINTREDIVYDGKYKVIIPTLISYQTYQEIISRTLEREW 206
N+ LEI++R E + TE+N + ++++I L+S Q +++ + +
Sbjct: 2 NKAKRLEILTRLRENNPHPTTELN------FSSPFELLIAVLLSAQATDVSVNKATAKLY 55
Query: 207 NIQTEIN 213
+
Sbjct: 56 PVANTPA 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.405
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,004,669
Number of extensions: 46237
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 17
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)