BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2668
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H4P|A Chain A, Crystal Structure Of Wildtype Ment In The Cleaved
Conformation
Length = 394
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
M AF++NADF MT +K+ L IS+VI ++F+ V+E+GTEAAAAT
Sbjct: 346 MTTAFTTNADFRGMT-DKKDLAISKVIHQSFVAVDEKGTEAAAAT 389
>pdb|2H4R|A Chain A, Crystal Structure Of Wildtype Ment In The Native
Conformation
Length = 415
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
M AF++NADF MT +K+ L IS+VI ++F+ V+E+GTEAAAAT
Sbjct: 326 MTTAFTTNADFRGMT-DKKDLAISKVIHQSFVAVDEKGTEAAAAT 369
>pdb|2DUT|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|B Chain B, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|C Chain C, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
pdb|2DUT|D Chain D, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Native Conformation
Length = 423
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
M AF++NADF MT +K+ L IS+VI ++F+ V+E+GTEAAAAT
Sbjct: 334 MTTAFTTNADFRGMT-DKKDLAISKVIHQSFVAVDEKGTEAAAAT 377
>pdb|2H4Q|A Chain A, Crystal Structure Of A M-Loop Deletion Variant Of Ment In
The Cleaved Conformation
Length = 382
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
M AF++NADF MT +K+ L IS+VI ++F+ V+E+GTEA AAT
Sbjct: 334 MTTAFTTNADFRGMT-DKKDLAISKVIHQSFVAVDEKGTEAVAAT 377
>pdb|3OZQ|A Chain A, Crystal Structure Of Serpin48, Which Is A Highly Specific
Serpin In The Insect Tenebrio Molitor
Length = 376
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 4 AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
AF AD S + K L+IS ++QK+FI+V+EEG EAAAAT
Sbjct: 291 AFGDEADLSGIAGEKGDLVISNIVQKSFIDVSEEGVEAAAAT 332
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 12/65 (18%)
Query: 6 SSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRSS---- 61
SS A+F+ +T E L +S ++QKA IEV+E+GT+A+AAT IL RSS
Sbjct: 300 SSKANFAKITTGSENLHVSHILQKAKIEVSEDGTKASAATT-------AILIARSSPPWF 352
Query: 62 -VDTP 65
VD P
Sbjct: 353 IVDRP 357
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 1 MEVAFS-SNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ME AF+ A+FS M++ + L +SEV +A ++VNEEGTEAAA T
Sbjct: 296 MEDAFNKGRANFSGMSERND-LFLSEVFHQAMVDVNEEGTEAAAGT 340
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 1 MEVAFSSN-ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ME AF+ A+FS M++ + L +SEV +A ++VNEEGTEAAA T
Sbjct: 296 MEDAFNKGRANFSGMSERND-LFLSEVFHQAMVDVNEEGTEAAAGT 340
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRS 60
+E AF+S AD S +T + L +S+V+ KA ++V EEGTEA+AAT + ++ ++ R+
Sbjct: 311 IEEAFTSKADLSGITGARN-LAVSQVVHKAVLDVFEEGTEASAATAVKITLLSALVETRT 369
Query: 61 SV 62
V
Sbjct: 370 IV 371
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
+E AF+S AD S +T + L +S+V+ KA ++V EEGTEA+AAT
Sbjct: 310 IEEAFTSKADLSGITGARN-LAVSQVVHKAVLDVFEEGTEASAAT 353
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F +A+ + ++ NKE + +S+ I K+F+EVNEEG+EAAA +
Sbjct: 313 FIKDANLTGLSDNKE-IFLSKAIHKSFLEVNEEGSEAAAVS 352
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F +A+ + ++ NKE + +S+ I K+F+EVNEEG+EAAA +
Sbjct: 313 FIKDANLTGLSDNKE-IFLSKAIHKSFLEVNEEGSEAAAVS 352
>pdb|1ATT|A Chain A, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
pdb|1ATT|B Chain B, Crystal Structure Of Cleaved Bovine Antithrombin Iii At
3.2 Angstroms Resolution
Length = 429
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
++ + + L +S+ KAF+EVNEEG+EAAA+TV
Sbjct: 350 GIVAEGRSDLYVSDAFHKAFLEVNEEGSEAAASTV 384
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F +A+ + ++ NKE + +S+ I K+F+EVNEEG+EAAA +
Sbjct: 313 FIKDANLTGLSDNKE-IFLSKAIHKSFLEVNEEGSEAAAVS 352
>pdb|2HI9|A Chain A, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|B Chain B, Crystal Structure Of Human Native Protein C Inhibitor
pdb|2HI9|C Chain C, Crystal Structure Of Human Native Protein C Inhibitor
Length = 363
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F+S+AD S ++ N + +SE++ KA +EV+E GT AAAAT
Sbjct: 284 FTSHADLSGIS-NHSNIQVSEMVHKAVVEVDESGTRAAAAT 323
>pdb|2OL2|A Chain A, High Resolution Structure Of Native Pci In Space Group P21
pdb|2OL2|B Chain B, High Resolution Structure Of Native Pci In Space Group P21
pdb|3B9F|I Chain I, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
Length = 395
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F+S+AD S ++ N + +SE++ KA +EV+E GT AAAAT
Sbjct: 316 FTSHADLSGIS-NHSNIQVSEMVHKAVVEVDESGTRAAAAT 355
>pdb|3DY0|A Chain A, Crystal Structure Of Cleaved Pci Bound To Heparin
Length = 336
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F+S+AD S ++ N + +SE++ KA +EV+E GT AAAAT
Sbjct: 291 FTSHADLSGIS-NHSNIQVSEMVHKAVVEVDESGTRAAAAT 330
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
+E AF+S AD S +T + L +S+V+ KA ++V EEGTE +AAT
Sbjct: 291 IEEAFTSKADLSGITGARN-LAVSQVVHKAVLDVFEEGTERSAAT 334
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
+E AF+S AD S +T + L +S+V+ KA ++V EEGTEA+ AT
Sbjct: 291 IEEAFTSKADLSGITGARN-LAVSQVVHKAVLDVFEEGTEASRAT 334
>pdb|1LQ8|A Chain A, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|C Chain C, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|E Chain E, Crystal Structure Of Cleaved Protein C Inhibitor
pdb|1LQ8|G Chain G, Crystal Structure Of Cleaved Protein C Inhibitor
Length = 346
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F+S+AD S ++ N + +SE++ KA +EV+E GT AAAAT
Sbjct: 298 FTSHADLSGIS-NHSNIQVSEMVHKAVVEVDESGTRAAAAT 337
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
+E AF+S AD S +T + L +S+V+ KA ++V EEG EA+AAT
Sbjct: 291 IEEAFTSKADLSGITGARN-LAVSQVVHKAVLDVFEEGREASAAT 334
>pdb|2VDX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDX|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin
pdb|2VDY|A Chain A, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
pdb|2VDY|B Chain B, Crystal Structure Of The Reactive Loop Cleaved
Corticosteroid Binding Globulin Complexed With Cortisol
Length = 373
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
F++ A+FS +T++ + L S+V+ KA +++NEEGTEAA A
Sbjct: 293 FTTQANFSRITQDAQ-LKSSKVVHKAVLQLNEEGTEAAGA 331
>pdb|2GD4|I Chain I, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|C Chain C, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 443
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 364 GIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAAST 397
>pdb|1TB6|I Chain I, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|1T1F|A Chain A, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|B Chain B, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|1T1F|C Chain C, Crystal Structure Of Native Antithrombin In Its Monomeric
Form
pdb|2BEH|I Chain I, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2B5T|I Chain I, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
Length = 432
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 353 GIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAAST 386
>pdb|3KCG|I Chain I, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 432
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 353 GIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAAST 386
>pdb|4EB1|I Chain I, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 440
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 361 GIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAAST 394
>pdb|1ATH|A Chain A, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|1ANT|L Chain L, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|1ANT|I Chain I, Biological Implications Of A 3 Angstroms Structure Of
Dimeric Antithrombin
pdb|2ANT|L Chain L, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|2ANT|I Chain I, The 2.6 A Structure Of Antithrombin Indicates A
Conformational Change At The Heparin Binding Site
pdb|1AZX|I Chain I, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1AZX|L Chain L, AntithrombinPENTASACCHARIDE COMPLEX
pdb|1BR8|L Chain L, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1BR8|I Chain I, Implications For Function And Therapy Of A 2.9a Structure
Of Binary-Complexed Antithrombin
pdb|1E03|L Chain L, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E03|I Chain I, Plasma Alpha Antithrombin-Iii And Pentasaccharide
pdb|1E04|L Chain L, Plasma Beta Antithrombin-Iii
pdb|1E04|I Chain I, Plasma Beta Antithrombin-Iii
pdb|1E05|L Chain L, Plasma Alpha Antithrombin-Iii
pdb|1E05|I Chain I, Plasma Alpha Antithrombin-Iii
pdb|1DZG|L Chain L, N135q-S380c-Antithrombin-Iii
pdb|1DZH|L Chain L, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
pdb|1JVQ|L Chain L, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1JVQ|I Chain I, Crystal Structure At 2.6a Of The Ternary Complex Between
Antithrombin, A P14-P8 Reactive Loop Peptide, And An
Exogenous Tetrapeptide
pdb|1LK6|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1LK6|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
pdb|1NQ9|I Chain I, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1NQ9|L Chain L, Crystal Structure Of Antithrombin In The
Pentasaccharide-Bound Intermediate State
pdb|1OYH|L Chain L, Crystal Structure Of P13 Alanine Variant Of Antithrombin
pdb|1SR5|A Chain A, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1R1L|L Chain L, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|1R1L|I Chain I, Structure Of Dimeric Antithrombin Complexed With A P14-P9
Reactive Loop Peptide And An Exogenous Tripeptide
(Formyl-Norleucine-Lf)
pdb|2BEH|L Chain L, Crystal Structure Of Antithrombin Variant
S137a/v317c/t401c With Plasma Latent Antithrombin
pdb|2HIJ|L Chain L, Crystal Structure Of P14 Alanine Variant Of Antithrombin
pdb|1ATH|B Chain B, The Intact And Cleaved Human Antithrombin Iii Complex As A
Model For Serpin-Proteinase Interactions
pdb|2ZNH|A Chain A, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|2ZNH|B Chain B, Crystal Structure Of A Domain-Swapped Serpin Dimer
pdb|3EVJ|I Chain I, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|3EVJ|L Chain L, Intermediate Structure Of Antithrombin Bound To The
Natural Pentasaccharide
pdb|4EB1|L Chain L, Hyperstable In-Frame Insertion Variant Of Antithrombin
Length = 432
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 353 GIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAAST 386
>pdb|2B4X|L Chain L, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 349 GIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAAST 382
>pdb|2B4X|I Chain I, Crystal Structure Of Antithrombin-Iii
Length = 427
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 349 GIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAAST 382
>pdb|4AJT|A Chain A, The Cystal Structure Of Mouse Protein-Z Dependent Protease
Inhibitor(Mzpi)
Length = 427
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
FS++AD S ++ L +S V+Q++ +EV+E GTEA + T+
Sbjct: 344 FSTSADLSELSAMARNLQVSRVLQQSVLEVDERGTEAVSGTL 385
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRS 60
+E AF+S AD S +T + L +S+V+ KA ++V EEGTEA+ T + ++ ++ R+
Sbjct: 321 IEEAFTSKADLSGITGARN-LAVSQVVHKAVLDVFEEGTEASGTTAVKITLLSALVETRT 379
>pdb|2HIJ|I Chain I, Crystal Structure Of P14 Alanine Variant Of Antithrombin
Length = 432
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG EAAA+T
Sbjct: 353 GIVAEGRDDLYVSDAFHKAFLEVNEEGAEAAAST 386
>pdb|1DZH|I Chain I, P14-Fluorescein-N135q-S380c-Antithrombin-Iii
Length = 432
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG EAAA+T
Sbjct: 353 GIVAEGRDDLYVSDAFHKAFLEVNEEGXEAAAST 386
>pdb|1DZG|I Chain I, N135q-S380c-Antithrombin-Iii
Length = 432
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
++ + ++ L +S+ KAF+EVNEEG EAAA+T
Sbjct: 353 GIVAEGRDDLYVSDAFHKAFLEVNEEGCEAAAST 386
>pdb|1JJO|C Chain C, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
pdb|1JJO|D Chain D, Crystal Structure Of Mouse Neuroserpin (Cleaved Form)
Length = 261
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F +A+ + M+ KE L +S+ + K+ IEVNEEG+EAAAA+
Sbjct: 216 FIKDANLTAMSDKKE-LFLSKAVHKSCIEVNEEGSEAAAAS 255
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 5/52 (9%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV----DRPSIDEVIL 56
ADF+ ++ ++EPL +++ +QK IEVNE GT A+++T R + +E+I+
Sbjct: 308 ADFTSLS-DQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIM 358
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 5/52 (9%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV----DRPSIDEVIL 56
ADF+ ++ ++EPL +++ +QK IEVNE GT A+++T R + +E+I+
Sbjct: 304 ADFTSLS-DQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIM 354
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 5/52 (9%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV----DRPSIDEVIL 56
ADF+ ++ ++EPL +++ +QK IEVNE GT A+++T R + +E+I+
Sbjct: 304 ADFTSLS-DQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIM 354
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 5/52 (9%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV----DRPSIDEVIL 56
ADF+ ++ ++EPL +++ +QK IEVNE GT A+++T R + +E+I+
Sbjct: 327 ADFTSLS-DQEPLHVAQALQKVKIEVNESGTVASSSTAVIVSARMAPEEIIM 377
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 37.0 bits (84), Expect = 0.002, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
FS AD S ++ L +S V+Q+ IEV+E GTEA A +
Sbjct: 302 FSPFADLSELSATGRNLQVSRVLQRTVIEVDERGTEAVAGIL 343
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
FS AD S ++ L +S V+Q+ IEV+E GTEA A +
Sbjct: 340 FSPFADLSELSATGRNLQVSRVLQRTVIEVDERGTEAVAGIL 381
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
FS AD S ++ L +S V+Q+ IEV+E GTEA A +
Sbjct: 340 FSPFADLSELSATGRNLQVSRVLQRTVIEVDERGTEAVAGIL 381
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVD 47
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A D
Sbjct: 297 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGADDD 338
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAA 43
++ A+S NADFS +T++ L +S KA + + E+GTEAAA
Sbjct: 289 IQHAYSENADFSGLTEDN-GLKLSNAAHKAVLHIGEKGTEAAA 330
>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
Conforma
Length = 393
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 14 MTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
M KN L +S + KA IEVNEEGTEAAAA+
Sbjct: 318 MGKN---LCVSNIFHKACIEVNEEGTEAAAAS 346
>pdb|1M93|B Chain B, 1.65 A Structure Of Cleaved Viral Serpin Crma
Length = 245
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F S D+S M+ + + + +I K +I+VNEE TEAAAAT
Sbjct: 204 FGSTGDYSNMSNSD--VSVDAMIHKTYIDVNEEYTEAAAAT 242
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 35.8 bits (81), Expect = 0.005, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 293 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 331
>pdb|1C8O|A Chain A, 2.9 A Structure Of Cleaved Viral Serpin Crma
Length = 300
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F S D+S M+ + + + +I K +I+VNEE TEAAAAT
Sbjct: 259 FGSTGDYSNMSNSD--VSVDAMIHKTYIDVNEEYTEAAAAT 297
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 286 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 324
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 301 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 339
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F S AD S + N L +S V KA +EVNEEGT AAA T
Sbjct: 296 FESGADLSGI--NDGSLRVSAVEHKAVVEVNEEGTVAAATT 334
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 322 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 360
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 289 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 327
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 292 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 330
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 312 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 350
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 342 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 380
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 322 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAAGA 360
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++EPL ++ +QK IEVNE GT A+++T
Sbjct: 304 ADFTSLS-DQEPLHVALALQKVKIEVNESGTVASSST 339
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++EPL +++ +QK IEVNE GT +++T
Sbjct: 304 ADFTSLS-DQEPLHVAQALQKVKIEVNESGTVPSSST 339
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 4 AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
A+S NADFS +T++ L +S KA + + E+GTEAA A
Sbjct: 291 AYSENADFSGLTEDNG-LKLSNAAHKAVLHIGEKGTEAAGA 330
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++EPL ++ +QK IEVNE GT A+++T
Sbjct: 304 ADFTSLS-DQEPLHVALALQKVKIEVNESGTVASSST 339
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV----DRPSIDEVIL 56
ADF+ ++ ++EPL +++ +QK IEVNE GT +++T R + +E+I+
Sbjct: 304 ADFTSLS-DQEPLHVAQALQKVKIEVNESGTVESSSTAVIVSARMAPEEIIM 354
>pdb|2PEE|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
pdb|2PEE|B Chain B, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Native State
Length = 387
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 9 ADFSLMTKNK-EPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADFS + K+ L ISEV+ K FI V+E GT+A A T
Sbjct: 307 ADFSKLGKSDIGNLYISEVLHKTFISVDELGTKAGAVT 344
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++EPL ++ +QK IEVNE GT A+++T
Sbjct: 304 ADFTSLS-DQEPLHVALALQKVKIEVNESGTVASSST 339
>pdb|2PEF|A Chain A, Crystal Structure Of A Thermophilic Serpin, Tengpin, In
The Latent State
Length = 373
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 9 ADFSLMTKNK-EPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADFS + K+ L ISEV+ K FI V+E GT+A A T
Sbjct: 292 ADFSKLGKSDIGNLYISEVLHKTFISVDELGTKAGAVT 329
>pdb|2VH4|A Chain A, Structure Of A Loop C-sheet Serpin Polymer
pdb|2VH4|B Chain B, Structure Of A Loop C-sheet Serpin Polymer
Length = 381
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 9 ADFSLMTKNK-EPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADFS + K+ L ISEV+ K FI V+E GT+A A T
Sbjct: 300 ADFSKLGKSDIGNLYISEVLHKTFISVDELGTKAGAVT 337
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 4 AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
A+S NADFS +T++ L +S KA + + E+GTEAA A
Sbjct: 297 AYSENADFSGLTEDNG-LKLSNAAHKAVLHIGEKGTEAAGA 336
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 4 AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
A+S NADFS +T++ L +S KA + + E+GTEAA A
Sbjct: 296 AYSENADFSGLTEDNG-LKLSNAAHKAVLHIGEKGTEAAGA 335
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++EPL ++ +QK IEVNE GT A+++T
Sbjct: 302 ADFTSLS-DQEPLHVALALQKVKIEVNESGTVASSST 337
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++EPL ++ +QK IEVNE GT A+++T
Sbjct: 317 ADFTSLS-DQEPLHVALALQKVKIEVNESGTVASSST 352
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++EPL ++ +QK IEVNE GT A+++T
Sbjct: 300 ADFTSLS-DQEPLHVALALQKVKIEVNESGTVASSST 335
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 4 AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
A+S NADFS +T++ L +S KA + + E+GTEAA A
Sbjct: 297 AYSENADFSGLTEDNG-LKLSNAAHKAVLHIGEKGTEAAGA 336
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 5 FSSNADFSLMTKNK---EPLLISEVIQKAFIEVNEEGTEAAAAT 45
FS NA L+ + + + + +S + QKA I +NE G+EA AAT
Sbjct: 309 FSQNASLPLLARGRGARDEVRVSRIFQKAGITINELGSEAYAAT 352
>pdb|4BB2|A Chain A, Crystal Structure Of Cleaved Corticosteroid-binding
Globulin In Complex With Progesterone
Length = 340
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
F++ A+FS +T++ + L S+V+ KA +++NEEG + A +T
Sbjct: 294 FTNQANFSRITQDAQ-LKSSKVVHKAVLQLNEEGVDTAGST 333
>pdb|3T1P|A Chain A, Crystal Structure Of An Alpha-1-Antitrypsin Trimer
Length = 371
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAA 44
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA A
Sbjct: 289 FSNGADLSGVTE-EAPLKLSKAVHKAVLCIDEKGTEAAGA 327
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAA 42
FS+ AD S +T+ + PL +S+ + KA + ++E+GTEAA
Sbjct: 297 FSNGADLSGVTE-EAPLKLSKAVHKAVLTIDEKGTEAA 333
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV----DRPSIDEVIL 56
ADF+ ++ ++EPL +++ +QK IEVNE T A+++T R + +E+I+
Sbjct: 304 ADFTSLS-DQEPLHVAQALQKVKIEVNESCTVASSSTAVIVSARMAPEEIIM 354
>pdb|3LW2|A Chain A, Mouse Plasminogen Activator Inhibitor-1 (Pai-1)
Length = 379
Score = 32.7 bits (73), Expect = 0.052, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
ADF+ ++ ++E L +++ +QK IEVNE GT A+++T
Sbjct: 304 ADFTSLS-DQEQLSVAQALQKVRIEVNESGTVASSST 339
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTE---AAAATVDRPSIDE 53
FSS+A+ S ++ + E L IS+ + A E+NE GTE +A A VD S+ E
Sbjct: 306 FSSSANLSGIS-SAESLKISQAVHAAHAEINEAGTEVVGSAEAGVDAASVSE 356
>pdb|1OYH|I Chain I, Crystal Structure Of P13 Alanine Variant Of Antithrombin
Length = 432
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 12 SLMTKNKEPLLISEVIQKAFIEVNEEG 38
++ + ++ L +S+ KAF+EVNEEG
Sbjct: 353 GIVAEGRDDLYVSDAFHKAFLEVNEEG 379
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
FS +A+ S ++ + L +SE I A++E+ E G+E A +T
Sbjct: 307 FSPSANLSGIS-TAQTLKMSEAIHGAYVEIYEAGSEMATST 346
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 6 SSNADFSLMTKNKEPLLISEVIQKAFIEVNE 36
SS AD S M+ ++ + IS+++ K+F+EVNE
Sbjct: 309 SSKADLSGMSGARD-IFISKIVHKSFVEVNE 338
>pdb|2R9Y|A Chain A, Structure Of Antiplasmin
Length = 430
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 17 NKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
+++ L++S V ++ +E++E G EAAAAT
Sbjct: 308 SEQNLVVSSVQHQSTMELSEAGVEAAAAT 336
>pdb|1F0C|A Chain A, Structure Of The Viral Serpin Crma
Length = 305
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTE 40
F S D+S M + + + +I K +I+VNEE TE
Sbjct: 259 FGSTGDYSNMCNSD--VSVDAMIHKTYIDVNEEYTE 292
>pdb|2ZIX|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
Length = 307
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRSSVDTP 65
+DF+ + + EV + ++V E AAA VDR S +L + TP
Sbjct: 213 SDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPASLLAAYDACATP 269
>pdb|1YXA|A Chain A, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
pdb|1YXA|B Chain B, Serpina3n, A Murine Orthologue Of Human Antichymotrypsin
Length = 398
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 5 FSSNADFSLMTKNKEPLLISEVIQKAFIEV 34
FS+ AD S +T K+ L +S+V+ KA ++V
Sbjct: 315 FSTQADLSAITGTKD-LRVSQVVHKAVLDV 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,487,213
Number of Sequences: 62578
Number of extensions: 39367
Number of successful extensions: 180
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 102
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)