Query psy2668
Match_columns 65
No_of_seqs 148 out of 1055
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:07:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2392|consensus 99.5 5.8E-15 1.3E-19 104.1 3.8 55 1-56 294-349 (380)
2 PHA02948 serine protease inhib 99.5 9.8E-15 2.1E-19 102.6 4.4 50 1-52 290-340 (373)
3 smart00093 SERPIN SERine Prot 99.5 2.1E-14 4.6E-19 99.1 5.1 53 1-54 276-328 (359)
4 COG4826 Serine protease inhibi 99.5 2.2E-15 4.8E-20 106.2 -0.7 62 2-65 322-384 (410)
5 cd02048 neuroserpin Neuroserpi 99.5 4.1E-14 9E-19 99.0 4.9 52 1-53 290-341 (388)
6 cd02056 alpha-1-antitrypsin_li 99.5 5.2E-14 1.1E-18 97.3 4.4 52 1-53 280-331 (361)
7 cd02054 angiotensinogen Angiot 99.5 6.7E-14 1.5E-18 98.0 4.3 46 1-48 292-337 (372)
8 cd02055 PZI Protein Z-dependen 99.5 7.9E-14 1.7E-18 97.3 4.6 53 1-53 284-336 (365)
9 cd02044 ov-serpin ovalbumin fa 99.4 8.5E-14 1.8E-18 96.6 4.6 52 1-53 286-338 (370)
10 cd02053 alpha2AP Alpha2-antipl 99.4 1.1E-13 2.4E-18 95.9 4.4 46 1-49 275-320 (351)
11 cd02051 PAI-1_nexin-1 Plasmino 99.4 2.6E-13 5.7E-18 94.7 5.1 53 1-54 293-346 (377)
12 cd02059 ovalbumin_like The ova 99.4 2.5E-13 5.4E-18 95.0 4.9 53 1-54 303-356 (389)
13 cd02045 antithrombin-III_like 99.4 1.6E-13 3.5E-18 96.1 3.7 53 1-54 295-350 (381)
14 cd02050 C1_inh C1 inhibitor (C 99.4 2.3E-13 5E-18 94.3 4.2 48 1-50 275-322 (352)
15 cd02047 HCII Heparin cofactor 99.4 2.7E-13 5.8E-18 97.1 4.3 51 1-53 353-403 (436)
16 cd02058 PAI-2 Plasminogen Acti 99.4 3.9E-13 8.4E-18 93.6 3.9 50 1-51 294-344 (380)
17 cd00172 SERPIN SERine Proteina 99.3 1.3E-12 2.9E-17 90.0 4.8 49 1-50 282-330 (364)
18 cd02057 maspin_like Maspin (ma 99.3 1.3E-12 2.7E-17 91.2 4.0 47 1-48 290-337 (372)
19 cd02052 PEDF Pigment epitheliu 99.3 1.9E-12 4.1E-17 90.7 4.3 46 1-49 294-339 (374)
20 cd02046 hsp47 Heat shock prote 99.3 2.1E-12 4.5E-17 90.2 4.4 44 1-45 286-330 (366)
21 cd02049 bacterial_SERPIN SERin 99.3 4E-12 8.7E-17 88.1 5.3 51 1-53 280-331 (364)
22 PF00079 Serpin: Serpin (serin 99.3 8E-12 1.7E-16 85.7 5.8 44 1-45 285-329 (371)
23 cd02043 plant_SERPIN SERine Pr 99.2 1.3E-11 2.8E-16 86.2 4.8 53 1-53 292-345 (381)
24 PHA02660 serpin-like protein; 99.2 5.9E-12 1.3E-16 88.3 2.2 44 1-46 269-318 (364)
25 PF08474 MYT1: Myelin transcri 38.9 15 0.00032 25.6 0.8 14 27-40 137-150 (257)
26 PF09029 Preseq_ALAS: 5-aminol 22.4 29 0.00063 21.0 0.0 16 23-38 87-102 (107)
27 PF14894 Lsm_C: Lsm C-terminal 20.2 55 0.0012 18.2 0.8 14 31-44 33-46 (64)
No 1
>KOG2392|consensus
Probab=99.53 E-value=5.8e-15 Score=104.12 Aligned_cols=55 Identities=47% Similarity=0.549 Sum_probs=49.6
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecceeee
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVIL 56 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s~~~ 56 (65)
|+++|++ .||||+| +++.+++|++++||+.|||||+||||+|+|++.+...+.+.
T Consensus 294 i~~~F~~~~adls~l-s~~~~l~vs~v~Hka~ieV~E~GteAaaat~~~~~~~~~~~ 349 (380)
T KOG2392|consen 294 ITDIFSESKADLSGL-SESSNLYISKVIHKAFIEVDEEGTEAAAATAVEIVLRSLPP 349 (380)
T ss_pred ChhccCCCccccccC-ccCCCeeeeeeeEEEEEEECCCCchhhhhhhhHHhhccCCC
Confidence 6899998 6999999 77568999999999999999999999999999888877654
No 2
>PHA02948 serine protease inhibitor-like protein; Provisional
Probab=99.52 E-value=9.8e-15 Score=102.58 Aligned_cols=50 Identities=36% Similarity=0.513 Sum_probs=43.3
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecc
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSID 52 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~ 52 (65)
|+++|++ +||||+| ++ .+++|++++||++|||||+||||+|+|++.....
T Consensus 290 i~~~F~~~~Adfs~i-s~-~~l~vs~v~hka~IeVdE~GteAaAaT~~~~~~~ 340 (373)
T PHA02948 290 APSMFNPDNASFKHM-TR-DPLYIYKMFQNAKIDVDEQGTVAEASTIMVATAR 340 (373)
T ss_pred hHhhCCCCcCchhhh-cc-CceEEEeeEEEEEEEECCCceEEeecceeeeecc
Confidence 4689986 7999999 76 5799999999999999999999999998654433
No 3
>smart00093 SERPIN SERine Proteinase INhibitors.
Probab=99.51 E-value=2.1e-14 Score=99.06 Aligned_cols=53 Identities=43% Similarity=0.488 Sum_probs=46.2
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceeccee
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEV 54 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s~ 54 (65)
|+++|+.+|||++| ++..+++|++++||+.|+|||+||+|+++|.......++
T Consensus 276 l~~~F~~~adfs~i-~~~~~l~vs~v~hka~ieVdE~Gt~aaa~t~~~~~~~~~ 328 (359)
T smart00093 276 ITDLFSNKADLSGI-SEDKDLKVSKVLHKAVLEVNEEGTEAAAATGVIAVPRSL 328 (359)
T ss_pred cchhccCccCcccc-cCCCCeEEEeeeeEEEEEEcCCCccccccccccccccCC
Confidence 57899988999999 765789999999999999999999999999876555544
No 4
>COG4826 Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.2e-15 Score=106.17 Aligned_cols=62 Identities=42% Similarity=0.422 Sum_probs=56.1
Q ss_pred cccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecceeeeec-cccccCC
Q psy2668 2 EVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCC-RSSVDTP 65 (65)
Q Consensus 2 ~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s~~~~~-~~~~~~~ 65 (65)
-++|+..|||||| ++ ++|.|++|+|+++|+|+|+||||||+|++.+...++..+. ..++|-|
T Consensus 322 vdAF~n~AnFSgI-~~-~~L~Is~V~Hqa~idv~EeGteAaAAT~v~~~a~~~~~~~~e~~vD~P 384 (410)
T COG4826 322 VDAFENTANFSGI-SD-RRLEISDVFHQAFIDVDEEGTEAAAATAVVFKAVCAKGGWVEFVVDHP 384 (410)
T ss_pred HHHhhcccCcccc-cC-CcccHHHHhhhhheeccccchhhhhhceeeeeeeeecccceEEEecCc
Confidence 4689988999999 87 5799999999999999999999999999999999998887 6677766
No 5
>cd02048 neuroserpin Neuroserpin is a inhibitory member of the SERine Proteinase INhibitor (serpin) family that reacts preferentially with tissue-type plasminogen activator (tPA). It is located in neurons in regions of the brain where tPA is also found, suggesting that neuroserpin is the selective inhibitor of tPA in the central nervous system (CNS). This subgroup corresponds to clade I of the serpin superfamily.
Probab=99.48 E-value=4.1e-14 Score=99.04 Aligned_cols=52 Identities=38% Similarity=0.492 Sum_probs=44.7
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecce
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDE 53 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s 53 (65)
|+++|+++|||++| ++..+++|++++||+.|+|||+|++|+++|.......+
T Consensus 290 i~~~F~~~adfs~i-~~~~~l~vs~v~hka~ieV~E~Gt~a~a~t~~~~~~~~ 341 (388)
T cd02048 290 ITEIFSGGADLSGI-SDSKELYVSKVFHKVFLEVNEEGSEAAASSGMIAISRM 341 (388)
T ss_pred CchhhcCccCcccc-cCCCCeEEEEEEeeeEEEECCCcceehhhccccccccc
Confidence 57899988999999 76567999999999999999999999999976544333
No 6
>cd02056 alpha-1-antitrypsin_like alpha-1-antitrypsin_like. This family contains a variety of different members of clade A of the serpin superfamily. They include the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and noninhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=99.46 E-value=5.2e-14 Score=97.29 Aligned_cols=52 Identities=37% Similarity=0.434 Sum_probs=45.2
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecce
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDE 53 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s 53 (65)
|+++|++.|||++| ++..+++|++++||+.|+|||+||+|+|+|.......+
T Consensus 280 i~~~F~~~adfs~i-~~~~~l~vs~v~qk~~iev~E~Gt~aaa~t~~~~~~~~ 331 (361)
T cd02056 280 ITDVFSDKADLSGI-TEQPNLKVSKAVHKAVLDVDEKGTEAAAATGVEITPMS 331 (361)
T ss_pred hhhhcCCcCCcccc-CCCCCEEEEeeeeeeEEEEcCCCcccccccchhhhccc
Confidence 57899888999999 76578999999999999999999999999987654444
No 7
>cd02054 angiotensinogen Angiotensinogen is part of the renin-angiotensin system (RAS), which plays an important role in blood pressure regulation, renal haemodynamics, fluid and electrolyte homeostasis. It is also involved in normal and abnormal growth processes. The growth promoting actions of angiotensin have been shown in a variety of cells and tissues. This subgroup represents clade A8 of the serpin superfamily. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=99.45 E-value=6.7e-14 Score=97.97 Aligned_cols=46 Identities=28% Similarity=0.519 Sum_probs=42.0
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecc
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDR 48 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~ 48 (65)
|+++|+++||||+| ++ .+++|++++||+.|||||+||+|+|+|.+.
T Consensus 292 i~~~F~~~Adfs~i-~~-~~l~vs~v~hka~ieVdE~GteAaaat~~~ 337 (372)
T cd02054 292 LPALLGSEANLSKL-SN-DRFTVGKVLNKVFFELSEDGTEVQESTQQL 337 (372)
T ss_pred CcccccCccccccc-cC-CCceeeeeeeeEEEEEccCceecccccccc
Confidence 57899888999999 75 689999999999999999999999999763
No 8
>cd02055 PZI Protein Z-dependent protease inhibitor (ZPI) is a member of the serpin superfamily of proteinase inhibitors (clade A10). ZPI inhibits coagulation factor Xa , dependent on protein Z (PZ), a vitamin K-dependent plasma protein. ZPI also inhibits factor XIa in a process that does not require PZ. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms.
Probab=99.45 E-value=7.9e-14 Score=97.31 Aligned_cols=53 Identities=40% Similarity=0.433 Sum_probs=44.4
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecce
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDE 53 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s 53 (65)
|+++|++.||||+|+.+..+++|++++||+.|||||+||+|+++|.......+
T Consensus 284 i~~~F~~~adls~i~~~~~~l~vs~v~hka~ievdE~Gt~aaa~t~~~~~~~~ 336 (365)
T cd02055 284 IKNIFAPFADLSELLADGKHLQVSQVLQKAVIEVDEKGTEAAAAIGSEIIAFS 336 (365)
T ss_pred cchhhcCcCCcccccCCCCcEEEEeeeEEEEEEEccCCchhhhhhcceecccC
Confidence 57899978999999334468999999999999999999999999986544344
No 9
>cd02044 ov-serpin ovalbumin family of serpins (ov-serpins). Family of closely related proteins, whose members can be secreted (ovalbumin), cytosolic (leukocyte elastase inhibitor, LEI), or targeted to both compartments (plasminogen activator inhibitor 2, PAI-2). This subgroup corresponds to clade B of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants can cause blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=99.45 E-value=8.5e-14 Score=96.63 Aligned_cols=52 Identities=44% Similarity=0.493 Sum_probs=44.8
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecce
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDE 53 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s 53 (65)
|+++|++ +||||+| ++..+++|++++||+.|+|||+|++|+++|...+...+
T Consensus 286 l~~~F~~~~Adfs~m-s~~~~l~vs~v~qka~ievdE~Gt~aaa~t~~~~~~~~ 338 (370)
T cd02044 286 MKDAFSEGRANFSGM-SETKGLALSNVIHKASLEINEDGTEAAEVTGAVMLQRS 338 (370)
T ss_pred chhhCCCCCCChhhc-CCCCCeeEeeeeEeeEEEECCCccccccccceeeeccC
Confidence 5789997 6999999 76567999999999999999999999999986554443
No 10
>cd02053 alpha2AP Alpha2-antiplasmin (alpha2AP) is the primary inhibitor of plasmin, a proteinase that digests fibrin, the main component of blood clots. Alpha2-Antiplasmin forms an inactive 1 : 1 stoichiometric complex with plasmin. It also rapidly crosslinks to fibrin during blood clotting by activated coagulation factor XIII, and as a consequence fibrin becomes more resistant to fibrinolysis. Therefore alpha2AP is important in modulating the effectiveness and persistence of fibrin with respect to its susceptibility to digestion and removal by plasmin. This subgroup corresponds to clade F2 of the serpin superfamily.
Probab=99.44 E-value=1.1e-13 Score=95.88 Aligned_cols=46 Identities=35% Similarity=0.538 Sum_probs=41.3
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecce
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRP 49 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~ 49 (65)
|+++|+ .||||+| ++ .+++|++++||+.|||||+||+|+|+|.+..
T Consensus 275 i~~~F~-~adfs~i-~~-~~~~vs~v~hka~ieVdE~Gt~aaa~t~~~~ 320 (351)
T cd02053 275 LQELFQ-APDLSGI-SD-EPLFVSSVQHQSTLELSEKGVEASAATSVAT 320 (351)
T ss_pred chhccc-ccccccc-CC-CCceeeeeeEEEEEEECCCcceehhcceeec
Confidence 578999 5999999 76 5799999999999999999999999997654
No 11
>cd02051 PAI-1_nexin-1 Plasminogen activator inhibitor-1_like. Plasminogen activator inhibitor-1 (PAI-1) is the primary, fast-acting inhibitor of plasminogen activators. It is often bound to vitronectin, an abundant component of the extracellular matrix in many tissues. Protease nexin-1 is a potent serpin able to inhibit thrombin, plasmin, and plasminogen activators. PAI-1 and nexin-1 are members of the serpin superfamily and represent clade E. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=99.41 E-value=2.6e-13 Score=94.73 Aligned_cols=53 Identities=38% Similarity=0.470 Sum_probs=46.0
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceeccee
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEV 54 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s~ 54 (65)
|+++|++ +|||++| ++..+++|++++||+.|||||+|++|+|+|...+...+.
T Consensus 293 l~~~F~~~~Adfs~i-~~~~~l~v~~v~hka~iev~E~Gt~aaa~t~~~~~~~~~ 346 (377)
T cd02051 293 ITDMFDQSKANFTKI-SRSESLHVSHALQKAKIEVNEDGTKASAATTAILIARSS 346 (377)
T ss_pred CcccccCCCCCcccc-cCCCCEEEEeEEEEEEEEECCCccchhhhcceeeeccCC
Confidence 5789996 8999999 766789999999999999999999999999876555444
No 12
>cd02059 ovalbumin_like The ovalbumin_like group of serpins contains ovalbumin, the squamous cell carcinoma antigen 1 (SCCA1) and other closely related serpins of clade B of the serpin superfamily. Ovalbumin, the major protein component of avian egg white, is a non-inhibitory member of SERine Proteinase INhibitorS (serpins). In contrast, SCCA1 inhibits cysteine proteinases such as cathepsin S, K, L, and papain, a so called cross-class serpin.
Probab=99.41 E-value=2.5e-13 Score=95.04 Aligned_cols=53 Identities=43% Similarity=0.537 Sum_probs=45.6
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceeccee
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEV 54 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s~ 54 (65)
|+++|++ .|||++| ++..+++|++++||+.|||||+|++|+++|.......++
T Consensus 303 i~~~F~~~~adfs~~-~~~~~l~v~~v~hka~ieV~E~G~~a~a~t~~~~~~~~~ 356 (389)
T cd02059 303 MTDIFSESKADLSGI-SSSKSLYLSKAIHKSYVEVNEEGTEAAAATGAGIVEKSL 356 (389)
T ss_pred CccccCCcccccccc-CCCCCceEeeeeeeEEEEECCCceeecccccceeeecCC
Confidence 5789997 6999999 765689999999999999999999999999876554443
No 13
>cd02045 antithrombin-III_like Antithrombin is a serine proteinase inhibitor (serpin) which controls the process of coagulation. It is the most important anticoagulant molecule in mammalian circulation systems, controlled by its interaction with the co-factor, heparin, which accelerates its interaction with target proteases, such as thrombin and factor Xa. This subgroup corresponds to clade C of the serpin superfamily.
Probab=99.41 E-value=1.6e-13 Score=96.12 Aligned_cols=53 Identities=40% Similarity=0.507 Sum_probs=44.5
Q ss_pred CcccCCC-CCCCCCCcCC--CCCeeEEeEeEEeEEEEcCccccceeeeecceeccee
Q psy2668 1 MEVAFSS-NADFSLMTKN--KEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEV 54 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~--~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s~ 54 (65)
|+++|++ .||||+| +. ..+++|++++||+.|||||+||+|+|+|...+...++
T Consensus 295 i~~~F~~~~Adfs~i-~~~~~~~l~vs~v~hka~ieV~E~GteAaaat~~~~~~~s~ 350 (381)
T cd02045 295 LEDLFSPENAKLPGI-VAGGRTDLYVSDAFHKAFLEVNEEGSEASAATAVVITGRSL 350 (381)
T ss_pred CcccCCCCCCCcccc-ccCCCCCceeeccceeeEEEECCCCeehhhhhhhhhhhccC
Confidence 5789997 7999999 63 2579999999999999999999999999765544443
No 14
>cd02050 C1_inh C1 inhibitor (C1-Inh) is a protease inhibitor of the serpin family. It plays a pivotal role in regulating the activation of the classical complement pathway and of the contact system, via regulating bradykinin formation, inhibiting factor XII and kallikrein of the contact system, and via acting on factor XI in the coagulation cascade. This subgroup corresponds to clade G of the serpin superfamily.
Probab=99.40 E-value=2.3e-13 Score=94.28 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=42.5
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeeccee
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPS 50 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~ 50 (65)
|+++|+ .|||++| +.+.+++|++++||+.|||||+||+|+|+|.+.+.
T Consensus 275 i~~~F~-~adfs~i-~~~~~l~v~~v~hk~~ieVdE~Gt~Aaa~t~~~~~ 322 (352)
T cd02050 275 LFGLFL-DANLCGL-YQDPELAVDAAQHRAVLTLTEKGVEAAAATATSFA 322 (352)
T ss_pred Chhhcc-ccchhhc-cCCCCeEEEeeEEeeEEEECCCchhhhhhcccccc
Confidence 568997 7999999 76568999999999999999999999999976544
No 15
>cd02047 HCII Heparin cofactor II (HCII) inhibits thrombin, the final protease of the coagulation cascade. HCII is allosterically activated by binding to cell surface glycosaminoglycans (GAGs). The specificity of HCII for thrombin is conferred by a highly acidic hirudin-like N-terminal tail, which becomes available after GAG binding for interaction with the anion-binding exosite I of thrombin. This subgroup corresponds to clade D of the serpin superfamily.
Probab=99.40 E-value=2.7e-13 Score=97.07 Aligned_cols=51 Identities=29% Similarity=0.285 Sum_probs=44.5
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecce
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDE 53 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s 53 (65)
|+++|+++||||+| ++ .+++|++++||+.|+|||+|++|+|+|.+...+.+
T Consensus 353 i~~lF~~~adfs~i-s~-~~l~vs~v~hka~IeVdE~GteAaa~T~~~~~~~~ 403 (436)
T cd02047 353 ITDLFTEKGNMAGV-SD-EKIAIDLFKHQGTITVNEEGTEAAAVTTVGFMPLS 403 (436)
T ss_pred hhhhcCCccccccc-CC-CCeEEEeeeeeeEEEEcCCcccchhccccccccCC
Confidence 57899988999999 76 57999999999999999999999999987654443
No 16
>cd02058 PAI-2 Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is a serine protease inhibitor that belongs to the ov-serpin branch of the serpin superfamily. It is is an effective inhibitor of urinary plasminogen activator (urokinase or uPA) and is involved in cell differentiation, tissue growth and regeneration.
Probab=99.38 E-value=3.9e-13 Score=93.60 Aligned_cols=50 Identities=56% Similarity=0.705 Sum_probs=43.6
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceec
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSI 51 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~ 51 (65)
|+++|++ .||||+| +...+++|++++||+.|||||+|++|+++|......
T Consensus 294 l~~~F~~~~adfs~i-~~~~~l~vs~v~hk~~ieV~E~G~~a~a~t~~~~~~ 344 (380)
T cd02058 294 MEDAFDPGKADFSGM-SSANDLFLSKVFHKAFVEVNEEGTEAAAATAAIMML 344 (380)
T ss_pred ccccCCcccccccCC-CCCCCCcccccceeeEEEECCCCcccccccchheee
Confidence 5789997 6999999 765789999999999999999999999999765433
No 17
>cd00172 SERPIN SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia.
Probab=99.34 E-value=1.3e-12 Score=90.03 Aligned_cols=49 Identities=57% Similarity=0.715 Sum_probs=43.9
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeeccee
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPS 50 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~ 50 (65)
|+++|++.|||++| +...+++|++++||+.|+|||+|++|+++|.....
T Consensus 282 l~~~F~~~a~~~~~-~~~~~l~v~~v~hk~~ievdE~Gt~aaa~t~~~~~ 330 (364)
T cd00172 282 ITDLFSPSADLSSI-SSDEPLYVSKVIHKAFIEVNEEGTEAAAATAVSIV 330 (364)
T ss_pred CccccCCccccccC-CCCCCeEEEeeeeeeEEEECCCceehhcccceeec
Confidence 57899999999999 66678999999999999999999999999986543
No 18
>cd02057 maspin_like Maspin (mammary serine proteinase inhibitor), a member of the serpin superfamily, with a multitude of effects on cells and tissues at an assortment of developmental stages. Maspin has tumor suppressing activity against breast and prostate cancer. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=99.32 E-value=1.3e-12 Score=91.17 Aligned_cols=47 Identities=34% Similarity=0.517 Sum_probs=42.1
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecc
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDR 48 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~ 48 (65)
|+++|++ .||||+| ++..+++|++++||+.|||||+|++|+++|...
T Consensus 290 i~~~F~~~~adfs~i-~~~~~l~vs~v~hk~~ieVdE~Gt~a~a~t~~~ 337 (372)
T cd02057 290 LKHIFNEDASDFSGM-SETKGVALSNVIHKVCLEVNEDGGESIEVPGAR 337 (372)
T ss_pred ChhhcCCcccccccc-cCCCceEEEeeeeeeEEEECCCCeecchhccee
Confidence 5789997 7999999 765679999999999999999999999998753
No 19
>cd02052 PEDF Pigment epithelium-derived factor (PEDF)_like. PEDF is non-inhibitory member of the Serpin superfamily. It exhibits neurotrophic, neuroprotective and antiangiogenic properties and is widely expressed in the developing and adult nervous systems. This subgroup corresponds to clade F1 of the serpin superfamily.
Probab=99.31 E-value=1.9e-12 Score=90.67 Aligned_cols=46 Identities=30% Similarity=0.573 Sum_probs=41.2
Q ss_pred CcccCCCCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecce
Q psy2668 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRP 49 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~ 49 (65)
|+++|+ .||||+| ++ .+++|++++||+.|||||+|++|+++|....
T Consensus 294 l~~~F~-~adfs~i-~~-~~l~v~~v~hk~~ieVdE~Gt~aaa~t~~~~ 339 (374)
T cd02052 294 LQSLFA-SPDFTKI-TS-KPIKLSHVHHKAVLELNEDGAETAPTPGSAT 339 (374)
T ss_pred Cccccc-ccchhhc-cc-cceEeEeeEEEEEEEECCCcccccccccccc
Confidence 578998 6999999 76 5799999999999999999999999997643
No 20
>cd02046 hsp47 Heat shock protein 47 (Hsp47), also called colligin, because of its collagen binding ability, is a chaperone specific for procollagen. It has been shown to be essential for collagen biosynthesis, but its exact function is still unclear. Hsp47 is a non-inhibitory member of the SERPIN superfamily and corresponds to clade H.
Probab=99.31 E-value=2.1e-12 Score=90.22 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=39.3
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeee
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t 45 (65)
|+++|++ +||||+| ++..+++|++++||+.|||||+|++|++++
T Consensus 286 i~~~F~~~~Adfs~i-~~~~~l~vs~v~hka~ieV~E~G~~aaa~~ 330 (366)
T cd02046 286 LTEAIDKSKADLSKI-SGKKDLYLSNVFHAAALEWDTEGNPFDPDI 330 (366)
T ss_pred CccccCCCCCCcccC-CCCCceeeeeeEEEEEEEECCCcchhhhhh
Confidence 5789986 8999999 765689999999999999999999998764
No 21
>cd02049 bacterial_SERPIN SERine Proteinase INhibitors (serpins), prokaryotic subgroup. Little information about specific functions is available for this subgroup, most likely they are inhibitory members of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors.
Probab=99.30 E-value=4e-12 Score=88.12 Aligned_cols=51 Identities=57% Similarity=0.671 Sum_probs=44.1
Q ss_pred CcccCCC-CCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeeeecceecce
Q psy2668 1 MEVAFSS-NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDE 53 (65)
Q Consensus 1 I~~~F~~-~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s 53 (65)
|+++|++ .|||+++ ++ .+++|++++||+.|+|||+|++|+++|.......+
T Consensus 280 i~~~F~~~~a~~s~~-~~-~~l~vs~v~hka~iev~E~G~~a~a~t~~~~~~~~ 331 (364)
T cd02049 280 MEEAFTPDAADFSKL-GE-GNLYISKVIHKTFIEVNEEGTEAAAATSVEITETS 331 (364)
T ss_pred ccccCCCCcCCCCCC-CC-CCeEEEeeeeeEEEEEccCceeecccceeeeeecc
Confidence 5789996 7999999 76 58999999999999999999999999987654443
No 22
>PF00079 Serpin: Serpin (serine protease inhibitor); InterPro: IPR023796 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Serpins (SERine Proteinase INhibitors) [, , ] belong to MEROPS inhibitor family I4, clan ID. Serpins are proteins that are primarily known as irreversible serine protease inhibitors active against S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO) and C14 (IPR002398 from INTERPRO) peptidases. There are both extra- and intra-cellular serpins, which are found in all groups of organisms with the notable exception of fungi [, ]. In contrast to "rigid" proteinase inhibitors, such as those of the Kunitz or Kazal families, the serpins are metastable proteins (active-state proteins) which interact with their substrate and irreversibly trap the acyl intermediate as a result of a major conformational change []; they are best described as suicide substrate inhibitors. The common structure of these proteins is a multi-domain fold containing a bundle of 8 or 9 alpha helices and a beta sandwich formed by 3 beta sheets. The reactive centre loop (RCL) is found in the C-terminal part of these proteins. Serpins and their homologues are a group of high molecular weight (40 to 50 kDa) structurally related proteins involved in a number of fundamental biological processes such as blood coagulation, complement activation, fibrinolysis, angiogenesis, inflammation, tumour suppression and hormone transport. All known serpins have been classified into 16 clades and 10 orphan sequences; the vertebrate serpins can be conveniently classified into six sub-groups []. In human plasma they represent approximately 2% of the total protein, of which 70% is alpha-1-antitrypsin. On the basis of strong sequence similarities, a number of proteins with no known inhibitory activity also belong to this family, these include: angiotensinogen, corticosteroid-binding globulin and thyroxin-binding globulin []. This entry represents the structural domain of serpins. It consists of a cluster of helices and a beta-sandwich.; PDB: 3PZF_A 3B9F_I 1MTP_A 1SNG_A 1ANT_I 2ZNH_B 1BR8_I 1SR5_A 1E03_L 1AZX_L ....
Probab=99.28 E-value=8e-12 Score=85.67 Aligned_cols=44 Identities=61% Similarity=0.832 Sum_probs=40.9
Q ss_pred CcccCC-CCCCCCCCcCCCCCeeEEeEeEEeEEEEcCccccceeee
Q psy2668 1 MEVAFS-SNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45 (65)
Q Consensus 1 I~~~F~-~~Adfsgi~s~~~~l~vs~v~hka~ieV~E~Gteaaa~t 45 (65)
|+++|+ ..|||++| +...+++|++++||+.|+|||+|++|+++|
T Consensus 285 i~~~F~~~~adfs~i-~~~~~~~v~~v~qk~~i~v~E~G~~a~a~t 329 (371)
T PF00079_consen 285 IKDLFDPDSADFSGI-SDDEPLYVSDVIQKAVIEVDEEGTEAAAAT 329 (371)
T ss_dssp TTGGGSTTTSSCTTT-BSSSTEEEEEEEEEEEEEEESSEEEEEEEE
T ss_pred ccccccccccccccc-ccceeeeeeeccceeeeccccccccccccc
Confidence 578999 59999999 755899999999999999999999999999
No 23
>cd02043 plant_SERPIN SERine Proteinase INhibitors (serpins), plant specific subgroup. It has been suggested that plant serpins play a role in defense against insect predators. This subgroup corresponds to clade P of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones.
Probab=99.23 E-value=1.3e-11 Score=86.23 Aligned_cols=53 Identities=40% Similarity=0.458 Sum_probs=43.1
Q ss_pred CcccCCCCCCCCCCcC-CCCCeeEEeEeEEeEEEEcCccccceeeeecceecce
Q psy2668 1 MEVAFSSNADFSLMTK-NKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDE 53 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s-~~~~l~vs~v~hka~ieV~E~Gteaaa~t~~~~~~~s 53 (65)
|+++|++.++++++.. ...+++|++++||+.|+|||+||+|+++|.......+
T Consensus 292 l~~~F~~~~~~~~~~~~~~~~l~vs~v~hka~ieVdE~Gt~aaa~t~~~~~~~~ 345 (381)
T cd02043 292 LTLPFDPGGALLSMSSPEGENLYVSSVYHKACVEVDEEGTEAAAATAVVMSGTS 345 (381)
T ss_pred CccccCCccccccCccCCCCCeeEEeeeeEEEEEECCCcceehhccceeecccc
Confidence 5789998778777622 2357999999999999999999999999987654444
No 24
>PHA02660 serpin-like protein; Provisional
Probab=99.20 E-value=5.9e-12 Score=88.27 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=37.5
Q ss_pred CcccCCCCCCCCCCcCCC----CCee--EEeEeEEeEEEEcCccccceeeee
Q psy2668 1 MEVAFSSNADFSLMTKNK----EPLL--ISEVIQKAFIEVNEEGTEAAAATV 46 (65)
Q Consensus 1 I~~~F~~~Adfsgi~s~~----~~l~--vs~v~hka~ieV~E~Gteaaa~t~ 46 (65)
|+++|+ .||||+| ++. .+++ |++++||++|||||+||+|+|+|.
T Consensus 269 i~~~F~-~Adfs~i-~~~~~~~~~l~~~vs~v~hka~ieVdE~GteAaaat~ 318 (364)
T PHA02660 269 IKTLFT-NPNLSRM-ITQGDKEDDLYPLPPSLYQKIILEIDEEGTNTKNIAK 318 (364)
T ss_pred chhhcc-ccCcccc-ccCCCcccccccccccceEeeEEEECCCCcHHHHhhh
Confidence 578998 6999999 642 2477 799999999999999999999874
No 25
>PF08474 MYT1: Myelin transcription factor 1; InterPro: IPR013681 This domain is found in the myelin transcription factor 1 (MYT1) of chordates. MYT1 contains C2HC zinc finger domains (IPR002515 from INTERPRO) and is expressed in developing neurons of the central nervous system [] where it is involved in the selection of neuronal precursor cells [].
Probab=38.90 E-value=15 Score=25.65 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=11.0
Q ss_pred eEEeEEEEcCcccc
Q psy2668 27 IQKAFIEVNEEGTE 40 (65)
Q Consensus 27 ~hka~ieV~E~Gte 40 (65)
-+...|||||.||-
T Consensus 137 sk~~~iEVDENGTL 150 (257)
T PF08474_consen 137 SKSPDIEVDENGTL 150 (257)
T ss_pred cCCCceeeccCCcc
Confidence 35567999999983
No 26
>PF09029 Preseq_ALAS: 5-aminolevulinate synthase presequence; InterPro: IPR015118 The N-terminal presequence domain found in 5-aminolevulinate synthase exists as an amphipathic helix, with a positively charged surface provided by lysine residues and no stable helix at the N terminus. The domain is essential for the import process by which ALAS is transported into the mitochondria: translocase of the outer membrane (Tom) and translocase of the inner membrane protein complexes appear responsible for recognition and import through the mitochondrial membrane. The protein Tom20 is anchored to the mitochondrial outer membrane, and its interaction with presequences is thought to be the recognition step which allows subsequent import []. ; GO: 0003870 5-aminolevulinate synthase activity, 0030170 pyridoxal phosphate binding, 0006778 porphyrin-containing compound metabolic process, 0005759 mitochondrial matrix; PDB: 1H7J_A 1H7D_A.
Probab=22.38 E-value=29 Score=20.98 Aligned_cols=16 Identities=50% Similarity=0.426 Sum_probs=0.0
Q ss_pred EEeEeEEeEEEEcCcc
Q psy2668 23 ISEVIQKAFIEVNEEG 38 (65)
Q Consensus 23 vs~v~hka~ieV~E~G 38 (65)
=|+|++||..||-|+=
T Consensus 87 ~~~vv~~a~~e~qEDv 102 (107)
T PF09029_consen 87 KSSVVQKASPEVQEDV 102 (107)
T ss_dssp ----------------
T ss_pred CCceeeecCHHHHHHH
Confidence 3578999999999874
No 27
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=20.25 E-value=55 Score=18.24 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=9.5
Q ss_pred EEEEcCccccceee
Q psy2668 31 FIEVNEEGTEAAAA 44 (65)
Q Consensus 31 ~ieV~E~Gteaaa~ 44 (65)
.+.|+|.|.|++..
T Consensus 33 rirVse~GVEGsGP 46 (64)
T PF14894_consen 33 RIRVSENGVEGSGP 46 (64)
T ss_dssp TEEEETTEEE--SH
T ss_pred eEEEeccccccCCh
Confidence 47899999987643
Done!