RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2668
         (65 letters)



>gnl|CDD|215699 pfam00079, Serpin, Serpin (serine protease inhibitor).  Structure
           is a multi-domain fold containing a bundle of helices
           and a beta sandwich.
          Length = 369

 Score = 76.1 bits (188), Expect = 2e-18
 Identities = 30/46 (65%), Positives = 37/46 (80%), Gaps = 1/46 (2%)

Query: 1   MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
           +  AFSS ADFS ++ + EPL +S+V+ KAFIEVNEEGTEAAAAT 
Sbjct: 284 ITDAFSSKADFSGISSS-EPLYVSKVVHKAFIEVNEEGTEAAAATG 328


>gnl|CDD|238101 cd00172, SERPIN, SERine Proteinase INhibitors (serpins) exhibit
           conformational polymorphism shifting from native to
           cleaved, latent, delta, or polymorphic forms. Many
           serpins, such as antitrypsin and antichymotrypsin,
           function as serine protease inhibitors which regulate
           blood coagulation cascades. Non-inhibitory serpins
           perform many diverse functions such as chaperoning
           proteins or transporting hormones. Serpins are of
           medical interest because mutants have been associated
           with blood clotting disorders, emphysema, cirrhosis, and
           dementia.
          Length = 364

 Score = 68.8 bits (169), Expect = 8e-16
 Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)

Query: 4   AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
            FS +AD S ++ + EPL +S+VI KAFIEVNEEGTEAAAAT 
Sbjct: 285 LFSPSADLSSIS-SDEPLYVSKVIHKAFIEVNEEGTEAAAATA 326


>gnl|CDD|214513 smart00093, SERPIN, SERine Proteinase INhibitors. 
          Length = 359

 Score = 66.8 bits (164), Expect = 4e-15
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 4   AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
            FS+ AD S ++   + L +S+V+ KA +EVNEEGTEAAAAT 
Sbjct: 279 LFSNKADLSGIS-EDKDLKVSKVLHKAVLEVNEEGTEAAAATG 320


>gnl|CDD|239004 cd02049, bacterial_SERPIN, SERine Proteinase INhibitors (serpins),
           prokaryotic subgroup. Little information about specific
           functions is available for this subgroup, most likely
           they are inhibitory members of the serpin superfamily.
           In general, serpins exhibit conformational polymorphism
           shifting from native to cleaved, latent, delta, or
           polymorphic forms. Many serpins, such as antitrypsin and
           antichymotrypsin, function as serine protease
           inhibitors.
          Length = 364

 Score = 60.8 bits (148), Expect = 5e-13
 Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 1   MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
           ME AF+ +A           L IS+VI K FIEVNEEGTEAAAAT 
Sbjct: 280 MEEAFTPDAADFSKLGEG-NLYISKVIHKTFIEVNEEGTEAAAATS 324


>gnl|CDD|239013 cd02058, PAI-2, Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is
           a serine protease inhibitor that belongs to the
           ov-serpin branch of the serpin superfamily. It is is an
           effective inhibitor of urinary plasminogen activator
           (urokinase or uPA) and is involved in cell
           differentiation, tissue growth and regeneration.
          Length = 380

 Score = 58.6 bits (142), Expect = 4e-12
 Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 2/46 (4%)

Query: 1   MEVAFS-SNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
           ME AF    ADFS M+   + L +S+V  KAF+EVNEEGTEAAAAT
Sbjct: 294 MEDAFDPGKADFSGMSSAND-LFLSKVFHKAFVEVNEEGTEAAAAT 338


>gnl|CDD|239011 cd02056, alpha-1-antitrypsin_like, alpha-1-antitrypsin_like. This
           family contains a variety of different members of clade
           A of the serpin superfamily. They include the classical
           serine proteinase inhibitors, alpha-1-antitrypsin and
           alpha-1-antichymotrypsin, protein C inhibitor,
           kallistatin, and noninhibitory serpins, like
           corticosteroid and thyroxin binding globulins. In
           general, SERine Proteinase INhibitors (serpins) exhibit
           conformational polymorphism shifting from native to
           cleaved, latent, delta, or polymorphic forms. Many
           serpins, such as antitrypsin and antichymotrypsin,
           function as serine protease inhibitors which regulate
           blood coagulation cascades. Non-inhibitory serpins
           perform many diverse functions such as chaperoning
           proteins or transporting hormones. Serpins are of
           medical interest because mutants have been associated
           with blood clotting disorders, emphysema, cirrhosis, and
           dementia.
          Length = 361

 Score = 55.3 bits (134), Expect = 5e-11
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 4   AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
            FS  AD S +T+    L +S+ + KA ++V+E+GTEAAAAT
Sbjct: 283 VFSDKADLSGITEQ-PNLKVSKAVHKAVLDVDEKGTEAAAAT 323


>gnl|CDD|227163 COG4826, COG4826, Serine protease inhibitor [Posttranslational
           modification, protein turnover, chaperones].
          Length = 410

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 2/42 (4%)

Query: 4   AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
           AF + A+FS ++     L IS+V  +AFI+V+EEGTEAAAAT
Sbjct: 324 AFENTANFSGISDR--RLEISDVFHQAFIDVDEEGTEAAAAT 363


>gnl|CDD|238998 cd02043, plant_SERPIN, SERine Proteinase INhibitors (serpins),
           plant specific subgroup. It has been suggested that
           plant serpins play a role in defense against insect
           predators. This subgroup corresponds to clade P of the
           serpin superfamily.  In general, serpins exhibit
           conformational polymorphism shifting from native to
           cleaved, latent, delta, or polymorphic forms.  Many
           serpins, such as antitrypsin and antichymotrypsin,
           function as serine protease inhibitors which regulate
           blood coagulation cascades. Non-inhibitory serpins
           perform many diverse functions such as chaperoning
           proteins or transporting hormones.
          Length = 381

 Score = 53.2 bits (128), Expect = 3e-10
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 7   SNADFSLMTKNKEP--LLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRSSV 62
                 L   + E   L +S V  KA +EV+EEGTEAAAAT        +        
Sbjct: 297 DPGGALLSMSSPEGENLYVSSVYHKACVEVDEEGTEAAAATAVV-----MSGTSSPPP 349


>gnl|CDD|239003 cd02048, neuroserpin, Neuroserpin is a inhibitory member of the
           SERine Proteinase INhibitor (serpin) family that reacts
           preferentially with tissue-type plasminogen activator
           (tPA). It is located in neurons in regions of the brain
           where tPA is also found, suggesting that neuroserpin is
           the selective inhibitor of tPA in the central nervous
           system (CNS).  This subgroup corresponds to clade I of
           the serpin superfamily.
          Length = 388

 Score = 52.2 bits (125), Expect = 7e-10
 Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 5   FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
           FS  AD S ++ +KE L +S+V  K F+EVNEEG+EAAA++
Sbjct: 294 FSGGADLSGISDSKE-LYVSKVFHKVFLEVNEEGSEAAASS 333


>gnl|CDD|239014 cd02059, ovalbumin_like, The ovalbumin_like group of serpins
           contains ovalbumin, the squamous cell carcinoma antigen
           1 (SCCA1) and other closely related serpins of clade B
           of the serpin superfamily. Ovalbumin, the major protein
           component of avian egg white, is a non-inhibitory member
           of SERine Proteinase INhibitorS (serpins). In contrast,
           SCCA1 inhibits cysteine proteinases such as cathepsin S,
           K, L, and papain, a so called cross-class serpin.
          Length = 389

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 6   SSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
            S AD S ++ + + L +S+ I K+++EVNEEGTEAAAAT
Sbjct: 309 ESKADLSGIS-SSKSLYLSKAIHKSYVEVNEEGTEAAAAT 347


>gnl|CDD|239006 cd02051, PAI-1_nexin-1, Plasminogen activator inhibitor-1_like.
           Plasminogen activator inhibitor-1 (PAI-1) is the
           primary, fast-acting inhibitor of plasminogen
           activators. It is often bound to vitronectin, an
           abundant component of the extracellular matrix in many
           tissues. Protease nexin-1 is a potent serpin able to
           inhibit thrombin, plasmin, and plasminogen activators.
           PAI-1 and nexin-1 are members of the serpin superfamily
           and represent clade E. In general, SERine Proteinase
           INhibitors (serpins) exhibit conformational polymorphism
           shifting from native to cleaved, latent, delta, or
           polymorphic forms.  Many serpins, such as antitrypsin
           and antichymotrypsin, function as serine protease
           inhibitors which regulate blood coagulation cascades.
           Non-inhibitory serpins perform many diverse functions
           such as chaperoning proteins or transporting hormones.
          Length = 377

 Score = 49.1 bits (117), Expect = 7e-09
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 13/64 (20%)

Query: 7   SNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRSS----- 61
           S A+F+ ++++ E L +S  +QKA IEVNE+GT+A+AAT         IL  RSS     
Sbjct: 300 SKANFTKISRS-ESLHVSHALQKAKIEVNEDGTKASAATT-------AILIARSSPPWFI 351

Query: 62  VDTP 65
           VD P
Sbjct: 352 VDRP 355


>gnl|CDD|239010 cd02055, PZI, Protein Z-dependent protease inhibitor (ZPI) is a
           member of the serpin superfamily of proteinase
           inhibitors (clade A10). ZPI inhibits coagulation factor
           Xa , dependent on protein Z (PZ), a vitamin K-dependent
           plasma protein. ZPI also inhibits factor XIa in a
           process that does not require PZ. In general, SERine
           Proteinase INhibitors (serpins) exhibit conformational
           polymorphism shifting from native to cleaved, latent,
           delta, or polymorphic forms.
          Length = 365

 Score = 46.5 bits (110), Expect = 7e-08
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 14/59 (23%)

Query: 5   FSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT--------------VDRP 49
           F+  AD S +  + + L +S+V+QKA IEV+E+GTEAAAA               VDRP
Sbjct: 288 FAPFADLSELLADGKHLQVSQVLQKAVIEVDEKGTEAAAAIGSEIIAFSMPPVIKVDRP 346


>gnl|CDD|238999 cd02044, ov-serpin, ovalbumin family of serpins (ov-serpins).
           Family of closely related proteins, whose members can be
           secreted (ovalbumin), cytosolic (leukocyte elastase
           inhibitor, LEI), or targeted to both compartments
           (plasminogen activator inhibitor 2, PAI-2). This
           subgroup corresponds to clade B of the serpin
           superfamily. In general, serpins exhibit conformational
           polymorphism shifting from native to cleaved, latent,
           delta, or polymorphic forms. Many serpins, such as
           antitrypsin and antichymotrypsin, function as serine
           protease inhibitors which regulate blood coagulation
           cascades. Non-inhibitory serpins perform many diverse
           functions such as chaperoning proteins or transporting
           hormones. Serpins are of medical interest because
           mutants can cause blood clotting disorders, emphysema,
           cirrhosis, and dementia.
          Length = 370

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)

Query: 1   MEVAFSSN-ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
           M+ AFS   A+FS M++  + L +S VI KA +E+NE+GTEAA  T
Sbjct: 286 MKDAFSEGRANFSGMSE-TKGLALSNVIHKASLEINEDGTEAAEVT 330


>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
           inhibitor (serpin) which controls the process of
           coagulation. It is the most important anticoagulant
           molecule in mammalian circulation systems, controlled by
           its interaction with the co-factor, heparin, which
           accelerates its interaction with target proteases, such
           as thrombin and factor Xa. This subgroup corresponds to
           clade C of the serpin superfamily.
          Length = 381

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 21  LLISEVIQKAFIEVNEEGTEAAAATV 46
           L +S+   KAF+EVNEEG+EA+AAT 
Sbjct: 317 LYVSDAFHKAFLEVNEEGSEASAATA 342


>gnl|CDD|239012 cd02057, maspin_like, Maspin (mammary serine proteinase inhibitor),
           a member of the serpin superfamily, with a multitude of
           effects on cells and tissues at an assortment of
           developmental stages. Maspin has tumor suppressing
           activity against breast and prostate cancer. In general,
           SERine Proteinase INhibitors (serpins) exhibit
           conformational polymorphism shifting from native to
           cleaved, latent, delta, or polymorphic forms.  Many
           serpins, such as antitrypsin and antichymotrypsin,
           function as serine protease inhibitors which regulate
           blood coagulation cascades. Non-inhibitory serpins
           perform many diverse functions such as chaperoning
           proteins or transporting hormones.
          Length = 372

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 1   MEVAFSSNA-DFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDR 48
           ++  F+ +A DFS M++ K  + +S VI K  +EVNE+G E+      R
Sbjct: 290 LKHIFNEDASDFSGMSETKG-VALSNVIHKVCLEVNEDGGESIEVPGAR 337


>gnl|CDD|165258 PHA02948, PHA02948, serine protease inhibitor-like protein;
           Provisional.
          Length = 373

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 8   NADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
           NA F  MT+  +PL I ++ Q A I+V+E+GT A A+T+
Sbjct: 298 NASFKHMTR--DPLYIYKMFQNAKIDVDEQGTVAEASTI 334


>gnl|CDD|239002 cd02047, HCII, Heparin cofactor II (HCII) inhibits thrombin, the
           final protease of the coagulation cascade. HCII is
           allosterically activated by binding to cell surface
           glycosaminoglycans (GAGs). The specificity of HCII for
           thrombin is conferred by a highly acidic hirudin-like
           N-terminal tail, which becomes available after GAG
           binding for interaction with the anion-binding exosite I
           of thrombin. This subgroup corresponds to clade D of the
           serpin superfamily.
          Length = 436

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 1   MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
           +   F+   + + ++  K  + I     +  I VNEEGTEAAA T 
Sbjct: 353 ITDLFTEKGNMAGVSDEK--IAIDLFKHQGTITVNEEGTEAAAVTT 396


>gnl|CDD|239008 cd02053, alpha2AP, Alpha2-antiplasmin (alpha2AP) is the primary
           inhibitor of plasmin, a proteinase that digests fibrin,
           the main component of blood clots. Alpha2-Antiplasmin
           forms an inactive 1 : 1 stoichiometric complex with
           plasmin. It also rapidly crosslinks to fibrin during
           blood clotting by activated coagulation factor XIII, and
           as a consequence fibrin becomes more resistant to
           fibrinolysis. Therefore alpha2AP is important in
           modulating the effectiveness and persistence of fibrin
           with respect to its susceptibility to digestion and
           removal by plasmin. This subgroup corresponds to clade
           F2 of the serpin superfamily.
          Length = 351

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 13/28 (46%), Positives = 21/28 (75%)

Query: 19  EPLLISEVIQKAFIEVNEEGTEAAAATV 46
           EPL +S V  ++ +E++E+G EA+AAT 
Sbjct: 290 EPLFVSSVQHQSTLELSEKGVEASAATS 317


>gnl|CDD|239009 cd02054, angiotensinogen, Angiotensinogen is part of the
           renin-angiotensin system (RAS), which plays an important
           role in blood pressure regulation, renal haemodynamics,
           fluid and electrolyte homeostasis. It is also involved
           in normal and abnormal growth processes. The growth
           promoting actions of angiotensin have been shown in a
           variety of cells and tissues. This subgroup represents
           clade A8 of the serpin superfamily. In general, SERine
           Proteinase INhibitors (serpins) exhibit conformational
           polymorphism shifting from native to cleaved, latent,
           delta, or polymorphic forms.  Many serpins, such as
           antitrypsin and antichymotrypsin, function as serine
           protease inhibitors which regulate blood coagulation
           cascades. Non-inhibitory serpins perform many diverse
           functions such as chaperoning proteins or transporting
           hormones.
          Length = 372

 Score = 32.1 bits (73), Expect = 0.007
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 7   SNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVD--RPSIDEVIL 56
           S A+ S ++   +   + +V+ K F E++E+GTE   +T    +P + EV L
Sbjct: 298 SEANLSKLSN--DRFTVGKVLNKVFFELSEDGTEVQESTQQLNKPEVLEVTL 347


>gnl|CDD|239005 cd02050, C1_inh, C1 inhibitor (C1-Inh) is a protease inhibitor of
           the serpin family. It plays a pivotal role in regulating
           the activation of the classical complement pathway and
           of the contact system, via regulating bradykinin
           formation, inhibiting factor XII and kallikrein of the
           contact system, and via acting on factor XI in the
           coagulation cascade. This subgroup corresponds to clade
           G of the serpin superfamily.
          Length = 352

 Score = 30.9 bits (70), Expect = 0.024
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 21  LLISEVIQKAFIEVNEEGTEAAAAT 45
           L +     +A + + E+G EAAAAT
Sbjct: 293 LAVDAAQHRAVLTLTEKGVEAAAAT 317


>gnl|CDD|239007 cd02052, PEDF, Pigment epithelium-derived factor (PEDF)_like. PEDF
           is non-inhibitory member of the Serpin superfamily. It
           exhibits neurotrophic, neuroprotective and
           antiangiogenic properties and is widely expressed in the
           developing and adult nervous systems. This subgroup
           corresponds to clade F1 of the serpin superfamily.
          Length = 374

 Score = 28.7 bits (64), Expect = 0.14
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 7   SNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
           ++ DF+ +T   +P+ +S V  KA +E+NE+G E A   
Sbjct: 299 ASPDFTKITS--KPIKLSHVHHKAVLELNEDGAETAPTP 335


>gnl|CDD|239155 cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA
           (Nitrate-R-NapA), NasA, and NarB catalyze the reduction
           of nitrate to nitrite. Monomeric Nas is located in the
           cytoplasm and participates in nitrogen assimilation.
           Dimeric Nap is located in the periplasm and is coupled
           to quinol oxidation via a membrane-anchored tetraheme
           cytochrome. Members of the MopB_Nitrate-R-NapA CD belong
           to the molybdopterin_binding (MopB) superfamily of
           proteins.
          Length = 565

 Score = 28.7 bits (65), Expect = 0.14
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 21  LLISE-VIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRSSVDT 64
           +LI E +I + FI+ + EG E   A V   + ++V          
Sbjct: 226 VLIEEGLIDRDFIDAHTEGFEELKAFVADYTPEKVAEITGVPEAD 270


>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit
          A; Reviewed.
          Length = 459

 Score = 26.6 bits (60), Expect = 0.75
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 29 KAFIEVNEEGTEAAAATVD 47
           AFI V EE   A A   D
Sbjct: 27 NAFITVTEEEALAQAKAAD 45


>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like
           family. The macro domain is a high-affinity ADP-ribose
           binding module found in a variety of proteins as a
           stand-alone domain or in combination with other domains
           like in histone macroH2A and some PARPs (poly ADP-ribose
           polymerases). Some macro domains recognize poly
           ADP-ribose as a ligand. Previously identified as
           displaying an Appr-1"-p (ADP-ribose-1"-monophosphate)
           processing activity, the macro domain may play roles in
           distinct ADP-ribose pathways, such as the
           ADP-ribosylation of proteins, an important
           post-translational modification which occurs in DNA
           repair, transcription, chromatin biology, and long-term
           memory formation, among other processes. This family is
           composed of uncharacterized proteins that show
           similarity to Appr-1"-pase, containing conserved
           putative active site residues. Appr-1"-pase is a
           phosphatase specific for ADP-ribose-1"-monophosphate.
          Length = 165

 Score = 24.8 bits (55), Expect = 2.8
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 5/34 (14%)

Query: 35  NEEGTEAAAATV-----DRPSIDEVILCCRSSVD 63
            +E    A  TV     +  +I+ VI  C S  D
Sbjct: 123 LDEAARIALKTVREFLEEHDAIERVIFVCFSEED 156


>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated.
          Length = 256

 Score = 24.7 bits (54), Expect = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 25 EVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRSSVDT 64
          E  Q A  +++++G +A A   D    D+V    R  VDT
Sbjct: 37 ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDT 76


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.127    0.340 

Gapped
Lambda     K      H
   0.267   0.0798    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,059,802
Number of extensions: 214999
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 28
Length of query: 65
Length of database: 10,937,602
Length adjustment: 36
Effective length of query: 29
Effective length of database: 9,340,858
Effective search space: 270884882
Effective search space used: 270884882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)