RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2668
(65 letters)
>g1mtp.1 e.1.1.1 (A:,B:) Thermopin {Thermobifida fusca [TaxId:
2021]}
Length = 355
Score = 66.4 bits (161), Expect = 1e-15
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 4 AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT-----------VDRP 49
F+++AD S ++ PL + VI +A + V+E G E AAAT VDRP
Sbjct: 275 LFTASADLSGIST--VPLYVDTVIHQARLRVDERGAEGAAATAAMMLLTIRFSVDRP 329
>g1m93.1 e.1.1.1 (A:,B:,C:) Viral serpin crmA (cytokine response
modifier protein) {Cowpox virus [TaxId: 10243]}
Length = 322
Score = 65.6 bits (159), Expect = 2e-15
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 4 AFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT--------VDRP 49
F S D+S M+ + + +I K +I+VNEE TEAAAAT D P
Sbjct: 249 VFGSTGDYSNMSN--SDVSVDAMIHKTYIDVNEEYTEAAAATSALTNEFSADHP 300
>g1as4.1 e.1.1.1 (A:,B:) Antichymotrypsin, alpha-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 369
Score = 65.3 bits (158), Expect = 3e-15
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
+E AF+S AD S +T L +S+V+ KA ++V EEGTEA+ AT
Sbjct: 286 IEEAFTSKADLSGIT-GARNLAVSQVVHKAVLDVFEEGTEASRATA 330
>d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm
(Manduca sexta) [TaxId: 7130]}
Length = 376
Score = 64.5 bits (156), Expect = 6e-15
Identities = 26/60 (43%), Positives = 30/60 (50%)
Query: 6 SSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCCRSSVDTP 65
A + K KE L + IQKAFIEVNEEG EAAAA +IL +D P
Sbjct: 297 PGAARLENLLKTKESLTVDAAIQKAFIEVNEEGAEAAAANAFGIVPKSLILYPEVHIDRP 356
>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 358
Score = 64.5 bits (156), Expect = 6e-15
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT 45
+ F+S+AD S ++ N + +SE++ KA +EV+E GT AAAAT
Sbjct: 279 ISNVFTSHADLSGIS-NHSNIQVSEMVHKAVVEVDESGTRAAAAT 322
>d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 372
Score = 63.7 bits (154), Expect = 1e-14
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
+ FS+ AD S +T + PL +S+ + KA + ++E+GTEAA A
Sbjct: 286 ITKVFSNGADLSGVT-EEAPLKLSKAVHKAVLTIDEKGTEAAGAMF 330
>d1jmja_ e.1.1.1 (A:) Heparin cofactor II (Hc-II, leuserpin 2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 420
Score = 63.7 bits (154), Expect = 1e-14
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
+ + F N + + ++ + + I + I VNEEGT+A T
Sbjct: 335 IRMLFDKNGNMAGISD--QRIAIDLFKHQGTITVNEEGTQATTVTT 378
>d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]}
Length = 385
Score = 63.0 bits (152), Expect = 3e-14
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT---VDRPSIDEVILC 57
+ FSS+A+ S ++ + E L IS+ + A E+NE G E + VD S+ E
Sbjct: 302 ITDVFSSSANLSGIS-SAESLKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRA 360
Query: 58 CR 59
Sbjct: 361 DH 362
>d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 379
Score = 61.1 bits (147), Expect = 1e-13
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 1 MEVAFSSN-ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
M F ADF+ ++ ++EPL +++ +QK IEVNE GT A+++T
Sbjct: 295 MTDMFRQFQADFTSLS-DQEPLHVAQALQKVKIEVNESGTVASSSTA 340
>d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]}
Length = 378
Score = 61.0 bits (147), Expect = 1e-13
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MEVAFSSN-ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCC 58
++ FS + +DFS M++ K + +S VI K +E+ E+G ++ R + L
Sbjct: 296 LKHIFSEDTSDFSGMSETK-GVALSNVIHKVSLEITEDGGDSIEVPGARILQHKDELNA 353
>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 426
Score = 60.6 bits (146), Expect = 2e-13
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 1 MEVAFSSN-ADFSLMTKN-KEPLLISEVIQKAFIEVNEEGTEAAAATV 46
+ FS + + ++ L +S+ KAF+EVNEEG+EAAA+T
Sbjct: 335 LVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAASTA 382
>g1hle.1 e.1.1.1 (A:,B:) Elastase inhibitor {Horse (Equus caballus)
[TaxId: 9796]}
Length = 375
Score = 60.3 bits (145), Expect = 2e-13
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 2 EVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPSIDEVILCC 58
++ AD S M+ + L +S++I K+F+++NEEGTEAAAAT + E
Sbjct: 295 DLFNRGKADLSGMSGAR-DLFVSKIIHKSFVDLNEEGTEAAAATAGTILLAEENFNA 350
>g1jjo.1 e.1.1.1 (A:,C:,E:) Neuroserpin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 334
Score = 59.0 bits (142), Expect = 5e-13
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Query: 1 MEVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAAT-----------VDRP 49
+ F +A+ + M +K+ L +S+ + K+ IEVNEEG+EAAAA+ VD P
Sbjct: 252 VTEIFIKDANLTAM-SDKKELFLSKAVHKSCIEVNEEGSEAAAASGMIAISYPQVIVDHP 310
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 59.1 bits (142), Expect = 6e-13
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 7 SNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVDRPS 50
+ DFS +T +P+ +++V +A E NE+G + +P+
Sbjct: 304 DSPDFSKITG--KPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPA 345
>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 381
Score = 56.8 bits (136), Expect = 3e-12
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 2 EVAFSSNADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATV 46
+ A+FS M++ + L +SEV +A ++VNEEGTEAAA T
Sbjct: 297 DAFNKGRANFSGMSE-RNDLFLSEVFHQAMVDVNEEGTEAAAGTG 340
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 125
Score = 24.0 bits (52), Expect = 1.2
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 9 ADFSLMTKNKEPLLISEVIQKAFIEVNEEGTEAAAATVD-RPSIDEVIL 56
D S +T + I + + + + + D +P+ D I+
Sbjct: 32 IDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.127 0.340
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 202,558
Number of extensions: 6710
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 16
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)