BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2669
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 95/137 (69%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
M ++TN+ YDY +SQG+ T+ +DD EE TD AFD+LGFT EEK ++YK+T ++MH
Sbjct: 300 MLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHF 359
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G MKFK + REEQAEPDGTEE D+ + L+G++S L L PR+KVGNE+VT+G+NV Q
Sbjct: 360 GNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQ 419
Query: 121 QAFDILGFTKEEKENVY 137
+ K E ++
Sbjct: 420 VIYATGALAKAVYERMF 436
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
AFD+LGFT EEK ++YK+T ++MH G MKFK + REEQAEPDGTE
Sbjct: 335 AFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTE 379
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 91/120 (75%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
M ++T + YDY+ VSQG+IT+P +DD EE TD A DILGF+ +EK +YK+T +VMH
Sbjct: 299 MLLITTNPYDYHYVSQGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHY 358
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G +KFKQ+ REEQAEPDGTE D+ + L+G++S +L L PR+KVGNEFVT+G+ V+Q
Sbjct: 359 GNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLKALCYPRVKVGNEFVTKGQTVSQ 418
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
A DILGF+ +EK +YK+T +VMH G +KFKQ+ REEQAEPDGTE
Sbjct: 334 AIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTE 378
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 92/118 (77%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK++++K TAS++HMG
Sbjct: 301 LVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGE 360
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+NQ
Sbjct: 361 MKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 418
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+AFDILGFTKEEK++++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 333 EAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 377
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 92/118 (77%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK++++K TAS++HMG
Sbjct: 296 LVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGE 355
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+NQ
Sbjct: 356 MKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 413
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+AFDILGFTKEEK++++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 328 EAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 372
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 139 bits (349), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 92/118 (77%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK++++K TAS++HMG
Sbjct: 297 LVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGE 356
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+NQ
Sbjct: 357 MKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 414
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+AFDILGFTKEEK++++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 329 EAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 373
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 92/118 (77%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK++++K TAS++HMG
Sbjct: 301 LVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGE 360
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+NQ
Sbjct: 361 MKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 418
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+AFDILGFTKEEK++++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 333 EAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 377
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 92/118 (77%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK++++K TAS++HMG
Sbjct: 301 LVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGE 360
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+NQ
Sbjct: 361 MKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 418
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+AFDILGFTKEEK++++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 333 EAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 377
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 90/118 (76%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK +++K TAS++HMG
Sbjct: 303 LITPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGE 362
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+ Q
Sbjct: 363 MKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQ 420
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+AFDILGFTKEEK +++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 335 EAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQAESDGT 379
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 135 bits (341), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 90/118 (76%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK +++K TAS++HMG
Sbjct: 302 LITPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGE 361
Query: 63 MKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+ Q
Sbjct: 362 MKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNLQQ 419
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+AFDILGFTKEEK +++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 334 EAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQAESDGT 378
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 82/120 (68%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
M ++T + YDY+ VS+G+IT+P +DD EE TD A DILGF+ +E +Y +T +VMH
Sbjct: 302 MLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEXTAIYXLTGAVMHY 361
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G +KF Q REEQAEPDGTE D + L+G++S +L L PR+ VGNE VT G V++
Sbjct: 362 GNLKFXQXQREEQAEPDGTEVADXAAYLMGLNSAELLKALCYPRVGVGNEAVTXGETVSE 421
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
A DILGF+ +E +Y +T +VMH G +KF Q REEQAEPDGTE
Sbjct: 336 SAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTE 381
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 82/120 (68%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
M ++T + YDY+ VS+G+IT+P +DD EE TD A DILGF+ +E +Y +T +VMH
Sbjct: 299 MLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEXTAIYXLTGAVMHY 358
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G +KF Q REEQAEPDGTE D + L+G++S +L L PR+ VGNE VT G V++
Sbjct: 359 GNLKFXQXQREEQAEPDGTEVADXAAYLMGLNSAELLKALCYPRVGVGNEAVTXGETVSE 418
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
A DILGF+ +E +Y +T +VMH G +KF Q REEQAEPDGTE
Sbjct: 333 SAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGTE 378
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 87/124 (70%), Gaps = 2/124 (1%)
Query: 14 VSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQ 73
++QG +T+ G+DD EE LTD AFD+LGFT EEK ++YK T ++H+G MK+KQRG EQ
Sbjct: 317 INQGTLTVDGIDDEEEMGLTDTAFDVLGFTDEEKLSMYKCTGCILHLGEMKWKQRG--EQ 374
Query: 74 AEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEK 133
AE DGT E ++V+ LLGV++ L L+KP+IKVG E+VTQGRN +Q I K
Sbjct: 375 AEADGTAEAEKVAFLLGVNAGDLLKCLLKPKIKVGTEYVTQGRNKDQVTNSIAALAKSLY 434
Query: 134 ENVY 137
+ ++
Sbjct: 435 DRMF 438
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%), Gaps = 2/44 (4%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
AFD+LGFT EEK ++YK T ++H+G MK+KQRG EQAE DGT
Sbjct: 339 AFDVLGFTDEEKLSMYKCTGCILHLGEMKWKQRG--EQAEADGT 380
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +G
Sbjct: 304 LLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGN 363
Query: 63 MKFKQRGREEQAE-PDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQ 121
+ FK+ +QA PD T +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 364 IVFKKERNTDQASMPDNT-AAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
F I K + E +++ + ++ K K++G
Sbjct: 423 DFAIEALAKAKFERLFRWILTRVNKALDKTKRQG 456
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAE-PDGT 165
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA PD T
Sbjct: 336 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +G
Sbjct: 304 LLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGN 363
Query: 63 MKFKQRGREEQAE-PDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQ 121
+ FK+ +QA PD T +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 364 IVFKKERNTDQASMPDNT-AAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
F I K + E +++ + ++ K K++G
Sbjct: 423 DFAIEALAKAKFERLFRWILTRVNKALDKTKRQG 456
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAE-PDGT 165
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA PD T
Sbjct: 336 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +G
Sbjct: 304 LLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGN 363
Query: 63 MKFKQRGREEQAE-PDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQ 121
+ FK+ +QA PD T +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 364 IVFKKERNTDQASMPDNT-AAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
F I K + E +++ + ++ K K++G
Sbjct: 423 DFAIEALAKAKFERLFRWILTRVNKALDKTKRQG 456
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAE-PDGT 165
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA PD T
Sbjct: 336 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +G
Sbjct: 304 LLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGN 363
Query: 63 MKFKQRGREEQAE-PDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQ 121
+ FK+ +QA PD T +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 364 IVFKKERNTDQASMPDNT-AAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
F I K + E +++ + ++ K K++G
Sbjct: 423 DFAIEALAKAKFERLFRWILTRVNKALDKTKRQG 456
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAE-PDGT 165
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA PD T
Sbjct: 336 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +G
Sbjct: 304 LLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGN 363
Query: 63 MKFKQRGREEQAE-PDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQ 121
+ FK+ +QA PD T +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 364 IVFKKERNTDQASMPDNT-AAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
F I K + E +++ + ++ K K++G
Sbjct: 423 DFAIEALAKAKFERLFRWILTRVNKALDKTKRQG 456
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAE-PDGT 165
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA PD T
Sbjct: 336 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 3 MLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGG 62
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +G
Sbjct: 304 LLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGN 363
Query: 63 MKFKQRGREEQAE-PDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQ 121
+ FK+ +QA PD T +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 364 IVFKKERNTDQASMPDNT-AAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
F I K + E +++ + ++ K K++G
Sbjct: 423 DFAIEALAKAKFERLFRWILTRVNKALDKTKRQG 456
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAE-PDGT 165
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA PD T
Sbjct: 336 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 303 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 361
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 362 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 414
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 372
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 303 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 361
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 362 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 414
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 372
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 315 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 373
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 374 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 426
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 384
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 303 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 361
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 362 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 414
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 372
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 303 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 361
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 362 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 414
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 372
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 361
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 361
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 315 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 373
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 374 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 426
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 384
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 315 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 373
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 374 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 426
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 372
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 361
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 303 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 361
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 362 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 414
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 360
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 315 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 373
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 374 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 426
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 337 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 372
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 303 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 361
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 362 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 414
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 325 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 360
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 361
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDEEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D +EF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D +EF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKT-ALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQ 153
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK 361
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D +EF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
++Y N S G + I G+ D +EF++T QA DI+GF++EE+ +++KI A ++H+G +KF++
Sbjct: 304 FNYLNQS-GCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG 362
Query: 69 GREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQA 122
E D T + S + GV+ L L++PRI G + V Q NV + +
Sbjct: 363 AGEGAVLKDKTAL-NAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSS 415
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 118 VNQQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT 165
+ +QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 326 ITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKT 373
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 57.8 bits (138), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 11 YYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGR 70
Y ++ G + PG + E FQ T ++ +LGF+ EE ++ ++ ++V+ G + K+
Sbjct: 282 YRFLTNGPSSSPGQER-ELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERN 340
Query: 71 EEQAE-PDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFT 129
+QA PD T ++ +LLG+ L+ PRIKVG ++V + + Q F +
Sbjct: 341 TDQATMPDNTA-AQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALA 399
Query: 130 KEEKENVYK 138
K E +++
Sbjct: 400 KATYERLFR 408
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 121 QAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAE-PDGT 165
++ +LGF+ EE ++ ++ ++V+ G + K+ +QA PD T
Sbjct: 305 ESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNT 350
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 4 LTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGM 63
L N Y +Y G I G+DD +E T QA +LG + + +++I A ++H+G +
Sbjct: 279 LGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNV 338
Query: 64 KFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNE 110
+F R + A P + L+GVD +++ L ++ E
Sbjct: 339 EFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATE 385
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEP 162
+QA +LG + + +++I A ++H+G ++F R + A P
Sbjct: 309 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIP 351
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 50.1 bits (118), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 4 LTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGM 63
L N Y +Y G I G+DD +E T QA +LG + + +++I A ++H+G +
Sbjct: 279 LGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNV 338
Query: 64 KFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNE 110
+F R + A P + L+GVD +++ L ++ E
Sbjct: 339 EFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATE 385
Score = 30.8 bits (68), Expect = 0.34, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEP 162
+QA +LG + + +++I A ++H+G ++F R + A P
Sbjct: 309 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIP 351
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 50.1 bits (118), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 4 LTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGM 63
L N Y +Y G I G+DD +E T QA +LG + + +++I A ++H+G +
Sbjct: 279 LGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNV 338
Query: 64 KFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNE 110
+F R + A P + L+GVD +++ L ++ E
Sbjct: 339 EFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATE 385
Score = 30.8 bits (68), Expect = 0.35, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEP 162
+QA +LG + + +++I A ++H+G ++F R + A P
Sbjct: 309 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIP 351
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKF--- 65
Y+Y S G + +DD EF++ +A + LG + ++ ++++I A+++H+G + F
Sbjct: 226 YEYLKKS-GCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEA 284
Query: 66 -KQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVG----NEFVTQGRNVNQ 120
+QR + T+ + L D Q L L I G E ++ + NQ
Sbjct: 285 AEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCEVISVPMDCNQ 344
Query: 121 QAFDILGFTKEEKENVYKITAS 142
A+ K E ++ S
Sbjct: 345 AAYSRDALAKALYERLFNWLVS 366
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 9 YDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKF--- 65
Y+Y S G + +DD EF++ +A + LG + ++ ++++I A+++H+G + F
Sbjct: 226 YEYLKKS-GCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEA 284
Query: 66 -KQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVG----NEFVTQGRNVNQ 120
+QR + T+ + L D Q L L I G ++ + NQ
Sbjct: 285 AEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQ 344
Query: 121 QAFDILGFTKEEKENVYKITAS 142
A+ K E ++ S
Sbjct: 345 AAYSRDALAKALYERLFNWLVS 366
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 17 GKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE---Q 73
G + PG+DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 303 GSLKDPGLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCN 362
Query: 74 AEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 363 LKNKSTQALEYCAELLGLDQDDLRVSL 389
Score = 30.8 bits (68), Expect = 0.40, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
A +G EEK +++++ A V+H+G + F++ G
Sbjct: 322 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 355
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 14 VSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE- 72
+ G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 310 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 369
Query: 73 --QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 370 GCNLKNKSTQALEYCAELLGLDQDDLRVSL 399
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 126 LGFTKEEKENVYKITASVMHMGGMKFKQRG 155
+G EEK +++++ A V+H+G + F++ G
Sbjct: 336 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 365
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 14 VSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE- 72
+ G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 310 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 369
Query: 73 --QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 370 GCNLKNKSTQALEYCAELLGLDQDDLRVSL 399
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 126 LGFTKEEKENVYKITASVMHMGGMKFKQRG 155
+G EEK +++++ A V+H+G + F++ G
Sbjct: 336 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 365
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 14 VSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE- 72
+ G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 298 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 357
Query: 73 --QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 358 GCNLKNKSTQALEYCAELLGLDQDDLRVSL 387
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 126 LGFTKEEKENVYKITASVMHMGGMKFKQRG 155
+G EEK +++++ A V+H+G + F++ G
Sbjct: 324 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 353
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 14 VSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE- 72
+ G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 297 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 356
Query: 73 --QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 357 GCNLKNKSTQALEYCAELLGLDQDDLRVSL 386
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 126 LGFTKEEKENVYKITASVMHMGGMKFKQRG 155
+G EEK +++++ A V+H+G + F++ G
Sbjct: 323 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 352
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 14 VSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE- 72
+ G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 301 LKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG 360
Query: 73 --QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 361 GCNLKNKSTQALEYCAELLGLDQDDLRVSL 390
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 126 LGFTKEEKENVYKITASVMHMGGMKFKQRG 155
+G EEK +++++ A V+H+G + F++ G
Sbjct: 327 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 356
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 7 DIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFK 66
D + Y N G + P +DD +F A +G EEK +++++ A V+H+G + F+
Sbjct: 268 DNFRYLN-RGGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFE 326
Query: 67 QRGREE---QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ G + T+ + ++LLG+D L +L
Sbjct: 327 EAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSL 363
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
A +G EEK +++++ A V+H+G + F++ G
Sbjct: 296 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 329
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 7 DIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFK 66
D + Y N G + P +DD +F A +G EEK +++++ A V+H+G + F+
Sbjct: 269 DNFRYLN-RGGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFE 327
Query: 67 QRGREE---QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ G + T+ + ++LLG+D L +L
Sbjct: 328 EAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSL 364
Score = 30.8 bits (68), Expect = 0.38, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
A +G EEK +++++ A V+H+G + F++ G
Sbjct: 297 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 330
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 7 DIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFK 66
D + Y N G + P +DD +F A +G EEK +++++ A V+H+G + F+
Sbjct: 268 DNFRYLN-RGGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFE 326
Query: 67 QRGREE---QAEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ G + T+ + ++LLG+D L +L
Sbjct: 327 EAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSL 363
Score = 30.8 bits (68), Expect = 0.38, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
A +G EEK +++++ A V+H+G + F++ G
Sbjct: 296 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 329
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 17 GKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE---Q 73
G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 304 GSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCN 363
Query: 74 AEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 364 LKNKSTQALEYCAELLGLDQDDLRVSL 390
Score = 30.8 bits (68), Expect = 0.38, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
A +G EEK +++++ A V+H+G + F++ G
Sbjct: 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 356
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 17 GKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE---Q 73
G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 303 GSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCN 362
Query: 74 AEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 363 LKNKSTQALEYCAELLGLDQDDLRVSL 389
Score = 30.8 bits (68), Expect = 0.39, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
A +G EEK +++++ A V+H+G + F++ G
Sbjct: 322 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 355
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 17 GKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE---Q 73
G + P +DD +F A +G EEK +++++ A V+H+G + F++ G
Sbjct: 303 GSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCN 362
Query: 74 AEPDGTEEGDRVSKLLGVDSQQLYTNL 100
+ T+ + ++LLG+D L +L
Sbjct: 363 LKNKSTQALEYCAELLGLDQDDLRVSL 389
Score = 30.8 bits (68), Expect = 0.39, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 122 AFDILGFTKEEKENVYKITASVMHMGGMKFKQRG 155
A +G EEK +++++ A V+H+G + F++ G
Sbjct: 322 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 355
>pdb|3EA1|A Chain A, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA1|B Chain B, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA2|A Chain A, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
pdb|3EA2|B Chain B, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
Length = 298
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 13 NVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGR 70
N+ +I+IPG D F+L + + G T+E Y + H G F RGR
Sbjct: 20 NIPLARISIPGTHDSGTFKLQNPIKQVWGMTQE-----YDFRYQMDH-GARIFDIRGR 71
>pdb|3EA3|A Chain A, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA3|B Chain B, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
Length = 298
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 13 NVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGR 70
N+ +I+IPG D F+L + + G T+E Y + H G F RGR
Sbjct: 20 NIPLARISIPGTHDSGTFKLQNPIKQVWGMTQE-----YDFRYQMDH-GARIFDIRGR 71
>pdb|2OR2|A Chain A, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
pdb|2OR2|B Chain B, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
Length = 296
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 13 NVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGR 70
N+ +I+IPG D F+L + + G T+E Y + H G F RGR
Sbjct: 20 NIPLARISIPGTHDSGTFKLQNPIKQVAGMTQE-----YDFRYQMDH-GARIFDIRGR 71
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 20/125 (16%)
Query: 23 GMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEG 82
G+ + +T L F EE N + G +F +EEQ+
Sbjct: 15 GLSNNYVLSITQDKQGFLWFATEEGLNKFD---------GTRFITYYKEEQSS------- 58
Query: 83 DRVSKLLGVDSQQLYTNLVKPRIKVGNEFV-TQGRNVNQQAFDILGFTKEEKENVYKITA 141
V + G + ++YT+ V+P I + + N Q+F + + E+ +++ IT
Sbjct: 59 -SVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSL--ITN 115
Query: 142 SVMHM 146
V H+
Sbjct: 116 DVTHI 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,306,892
Number of Sequences: 62578
Number of extensions: 214567
Number of successful extensions: 590
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 125
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)