Query psy2669
Match_columns 166
No_of_seqs 204 out of 1102
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 22:09:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kk8_A Myosin heavy chain, str 100.0 3.1E-40 1.1E-44 301.0 14.2 148 2-149 300-447 (837)
2 4db1_A Myosin-7; S1DC, cardiac 100.0 4.4E-40 1.5E-44 298.0 14.7 149 1-149 300-448 (783)
3 1lkx_A Myosin IE heavy chain; 100.0 6.2E-40 2.1E-44 294.4 11.3 148 2-149 217-373 (697)
4 1w7j_A Myosin VA; motor protei 100.0 2.5E-39 8.6E-44 293.8 14.1 147 2-150 277-425 (795)
5 1w9i_A Myosin II heavy chain; 100.0 3.4E-39 1.2E-43 291.6 14.8 146 2-149 296-442 (770)
6 2ycu_A Non muscle myosin 2C, a 100.0 1.6E-38 5.4E-43 294.6 15.5 147 1-149 273-419 (995)
7 1i84_S Smooth muscle myosin he 100.0 2.3E-38 7.9E-43 298.2 15.0 148 1-149 303-450 (1184)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 3.4E-38 1.2E-42 294.3 15.5 148 1-150 276-425 (1080)
9 1g8x_A Myosin II heavy chain f 100.0 2.7E-38 9.3E-43 293.2 14.0 146 2-149 296-442 (1010)
10 2v26_A Myosin VI; calmodulin-b 100.0 9.8E-38 3.4E-42 283.2 13.6 147 1-148 258-439 (784)
11 4anj_A Unconventional myosin-V 100.0 2.7E-36 9.3E-41 279.8 11.7 146 2-148 263-443 (1052)
12 2ou3_A Tellurite resistance pr 79.0 9 0.00031 27.4 7.4 74 21-100 42-137 (161)
13 2h5n_A Hypothetical protein PG 67.5 3.8 0.00013 28.7 2.8 80 21-100 31-127 (133)
14 1n45_A Heme oxygenase 1, HO-1; 64.3 14 0.00046 28.3 5.7 33 21-53 169-202 (233)
15 1sk7_A Hypothetical protein PA 56.1 24 0.00082 26.1 5.7 31 21-51 149-179 (198)
16 3f6w_A XRE-family like protein 52.5 19 0.00065 21.9 4.0 61 32-101 18-78 (83)
17 1j77_A HEMO, heme oxygenase; p 50.0 40 0.0014 25.2 6.1 31 21-51 144-174 (209)
18 1sfx_A Conserved hypothetical 45.7 53 0.0018 20.5 7.2 50 30-100 6-55 (109)
19 3oq9_A Tumor necrosis factor r 44.8 3.9 0.00013 26.8 -0.3 27 24-50 6-32 (86)
20 3neh_A Renal dipeptidase famil 44.7 12 0.00042 30.2 2.6 31 20-51 270-300 (318)
21 1ixs_A Holliday junction DNA h 43.0 43 0.0015 20.2 4.3 25 29-53 16-40 (62)
22 1b0n_B Protein (SINI protein); 42.9 42 0.0014 20.1 4.1 27 27-53 12-38 (57)
23 2pmy_A RAS and EF-hand domain- 42.3 33 0.0011 21.2 4.0 22 32-53 48-69 (91)
24 4fp9_B Mterf domain-containing 41.7 58 0.002 26.3 6.2 27 27-53 43-69 (335)
25 2jxu_A TERB, KP-TERB; tellurit 41.4 30 0.001 24.1 4.0 18 79-96 132-149 (153)
26 2r1j_L Repressor protein C2; p 41.2 22 0.00076 20.4 2.8 57 32-97 9-65 (68)
27 3kz3_A Repressor protein CI; f 40.5 14 0.0005 22.5 1.9 66 27-101 10-76 (80)
28 1qjt_A EH1, epidermal growth f 40.4 29 0.001 22.3 3.5 22 32-53 32-53 (99)
29 1adr_A P22 C2 repressor; trans 40.1 26 0.00089 20.6 3.1 58 32-98 9-66 (76)
30 3mhs_C SAGA-associated factor 38.9 21 0.00071 24.0 2.5 22 123-144 6-27 (99)
31 1c07_A Protein (epidermal grow 38.5 35 0.0012 21.5 3.7 23 31-53 30-52 (95)
32 1r69_A Repressor protein CI; g 36.7 42 0.0014 19.2 3.6 57 32-98 5-61 (69)
33 1fi6_A EH domain protein REPS1 34.3 45 0.0016 20.8 3.7 25 26-53 27-51 (92)
34 1eh2_A EPS15; calcium binding, 33.6 42 0.0014 22.1 3.5 22 32-53 35-56 (106)
35 1ozj_A SMAD 3; MAD homology do 33.0 8.8 0.0003 27.6 -0.1 46 92-139 47-94 (144)
36 2q32_A Heme oxygenase 2, HO-2; 32.9 82 0.0028 24.4 5.6 33 21-53 189-222 (264)
37 3op9_A PLI0006 protein; struct 32.5 40 0.0014 21.9 3.3 60 31-99 12-71 (114)
38 3e7l_A Transcriptional regulat 32.2 34 0.0012 20.2 2.6 21 82-102 35-55 (63)
39 1j02_A Heme oxygenase 1; alpha 32.2 67 0.0023 25.0 4.9 33 21-53 169-202 (267)
40 3s8q_A R-M controller protein; 32.2 55 0.0019 19.6 3.7 59 32-99 15-73 (82)
41 1g2h_A Transcriptional regulat 32.0 29 0.00099 20.5 2.2 19 83-101 37-55 (61)
42 4h62_K Mediator of RNA polymer 31.4 44 0.0015 17.9 2.6 21 39-59 11-31 (40)
43 3qsv_A SMAD4, mothers against 31.3 11 0.00036 26.8 0.1 47 93-140 46-94 (132)
44 3vk0_A NHTF, transcriptional r 31.0 55 0.0019 21.4 3.8 59 31-98 24-82 (114)
45 3ezq_A Tumor necrosis factor r 30.6 46 0.0016 22.8 3.3 23 28-50 18-40 (115)
46 3fym_A Putative uncharacterize 30.5 75 0.0026 21.5 4.5 65 32-103 7-75 (130)
47 2b5a_A C.BCLI; helix-turn-heli 30.2 84 0.0029 18.3 4.4 58 32-98 14-71 (77)
48 2kpj_A SOS-response transcript 30.1 31 0.001 21.7 2.3 60 31-99 12-71 (94)
49 1j9i_A GPNU1 DBD;, terminase s 30.1 37 0.0013 20.2 2.6 22 82-103 5-26 (68)
50 1y7y_A C.AHDI; helix-turn-heli 30.1 27 0.00091 20.5 1.9 58 31-97 16-73 (74)
51 1qgp_A Protein (double strande 29.7 56 0.0019 20.3 3.4 50 34-100 3-52 (77)
52 1ich_A TNF-1, tumor necrosis f 29.7 21 0.00071 24.5 1.4 22 29-50 24-45 (112)
53 3ly0_A Dipeptidase AC. metallo 29.6 39 0.0013 27.8 3.3 31 21-51 313-343 (364)
54 1x2l_A CUT-like 2, homeobox pr 29.5 73 0.0025 21.3 4.1 41 85-141 41-81 (101)
55 1zug_A Phage 434 CRO protein; 29.4 59 0.002 18.6 3.4 58 31-98 6-63 (71)
56 3kmp_A SMAD1-MH1; protein-DNA 29.4 12 0.00042 26.2 0.2 45 93-139 40-86 (124)
57 2da7_A Zinc finger homeobox pr 29.4 30 0.001 21.8 1.9 27 78-104 31-57 (71)
58 2i5g_A Amidohydrolase; NYSGXRC 29.2 33 0.0011 27.6 2.8 32 20-51 280-311 (325)
59 3lfp_A CSP231I C protein; tran 28.4 30 0.001 22.0 2.0 59 32-97 5-65 (98)
60 1ufm_A COP9 complex subunit 4; 27.5 42 0.0014 21.4 2.5 20 81-100 32-51 (84)
61 2rag_A Dipeptidase; aminohydro 27.4 43 0.0015 28.0 3.2 31 21-51 367-397 (417)
62 2bec_B Sodium/hydrogen exchang 26.9 52 0.0018 18.4 2.6 31 116-146 4-34 (43)
63 1itu_A Renal dipeptidase; glyc 26.8 38 0.0013 27.9 2.7 37 22-58 297-338 (369)
64 2ewt_A BLDD, putative DNA-bind 26.4 87 0.003 17.9 3.8 57 32-97 12-70 (71)
65 3f52_A CLP gene regulator (CLG 26.3 61 0.0021 21.1 3.3 64 27-99 26-90 (117)
66 3hd5_A Thiol:disulfide interch 26.1 1.7E+02 0.0058 20.5 7.1 64 75-147 103-189 (195)
67 2k9q_A Uncharacterized protein 26.0 45 0.0015 19.9 2.4 60 32-100 6-65 (77)
68 2jq6_A EH domain-containing pr 25.9 74 0.0025 22.2 3.8 9 42-50 67-75 (139)
69 1umq_A Photosynthetic apparatu 25.7 47 0.0016 21.1 2.5 20 82-101 57-76 (81)
70 1ify_A HHR23A, UV excision rep 25.3 98 0.0034 17.4 4.0 25 28-52 6-30 (49)
71 3b40_A PVDM, probable dipeptid 24.9 39 0.0013 28.3 2.5 31 21-51 366-396 (417)
72 1sfu_A 34L protein; protein/Z- 24.9 98 0.0033 19.5 3.8 35 53-101 17-51 (75)
73 1z96_A DNA-damage, UBA-domain 24.8 83 0.0028 16.4 3.3 21 30-50 4-24 (40)
74 3mse_B Calcium-dependent prote 24.5 84 0.0029 21.7 4.0 25 30-54 58-82 (180)
75 2k53_A A3DK08 protein; NESG, C 24.5 61 0.0021 20.2 2.9 28 74-101 33-60 (76)
76 2ppx_A AGR_C_3184P, uncharacte 24.2 34 0.0012 21.8 1.7 61 32-102 34-94 (99)
77 3g5g_A Regulatory protein; tra 24.2 1.4E+02 0.0049 18.9 4.9 63 28-99 27-90 (99)
78 1y6u_A XIS, excisionase from t 24.1 1.2E+02 0.004 18.6 4.1 32 81-112 18-54 (70)
79 3id7_A Dipeptidase; streptomyc 23.9 45 0.0015 27.8 2.7 30 22-51 329-358 (400)
80 3d7i_A Carboxymuconolactone de 23.5 1.1E+02 0.0037 19.7 4.1 26 32-57 64-89 (105)
81 1tiz_A Calmodulin-related prot 23.2 1E+02 0.0035 16.9 4.0 25 26-53 19-45 (67)
82 1tc3_C Protein (TC3 transposas 22.9 67 0.0023 16.6 2.6 20 82-101 24-43 (51)
83 1wh8_A CUT-like 2, homeobox pr 22.8 1E+02 0.0035 20.9 3.9 42 84-141 50-91 (111)
84 2blf_B SORB, sulfite\:cytochro 22.6 1.4E+02 0.0048 18.3 4.5 33 24-56 44-79 (81)
85 1k9u_A Polcalcin PHL P 7; poll 22.4 1.2E+02 0.0041 17.4 4.0 29 23-53 18-46 (78)
86 2kn2_A Calmodulin; S MAPK phos 22.2 1.2E+02 0.004 18.2 4.0 25 26-53 27-53 (92)
87 1q08_A Zn(II)-responsive regul 21.7 1.2E+02 0.004 19.2 4.0 24 30-53 5-28 (99)
88 2xi8_A Putative transcription 21.3 65 0.0022 18.1 2.4 21 77-97 41-61 (66)
89 3ivp_A Putative transposon-rel 21.1 74 0.0025 21.0 3.0 59 31-98 15-73 (126)
90 1wzd_A Heme oxygenase; electro 21.0 1.3E+02 0.0043 22.3 4.5 33 20-52 162-195 (215)
91 3fia_A Intersectin-1; EH 1 dom 20.9 99 0.0034 21.1 3.6 17 35-51 56-72 (121)
92 2bwb_A Ubiquitin-like protein 20.8 67 0.0023 18.0 2.2 20 27-46 4-23 (46)
93 3b7h_A Prophage LP1 protein 11 20.7 67 0.0023 18.8 2.4 60 31-98 10-69 (78)
94 3qq6_A HTH-type transcriptiona 20.6 66 0.0023 19.4 2.4 58 32-98 14-72 (78)
95 1g6u_A Domain swapped dimer; d 20.6 1.2E+02 0.0041 16.8 4.8 25 30-54 5-29 (48)
96 1c7v_A CAVP, calcium vector pr 20.5 78 0.0027 18.5 2.7 23 31-53 28-53 (81)
97 1nya_A Calerythrin; EF-hand, m 20.5 1.2E+02 0.004 20.3 4.0 19 35-53 126-144 (176)
98 1eto_A FIS, factor for inversi 20.3 68 0.0023 21.0 2.5 20 82-101 74-93 (98)
99 1upt_B Golgi autoantigen, golg 20.0 48 0.0016 20.1 1.5 15 46-60 22-36 (60)
No 1
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=3.1e-40 Score=301.05 Aligned_cols=148 Identities=45% Similarity=0.675 Sum_probs=135.5
Q ss_pred CCCCCCCCccccccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchh
Q psy2669 2 CMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEE 81 (166)
Q Consensus 2 l~L~~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~ 81 (166)
|+|..+|++|+||++|+..++++||+++|+++++||++|||+++|+..||+|||||||||||+|.+.++++.+.+.+.+.
T Consensus 300 l~L~~~~~~y~yL~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~ 379 (837)
T 1kk8_A 300 MLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAE 379 (837)
T ss_dssp HTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHH
T ss_pred hCCCCChhhcccccCCCcccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHH
Confidence 67878999999999999899999999999999999999999999999999999999999999999876567888999999
Q ss_pred HHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCc
Q psy2669 82 GDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGM 149 (166)
Q Consensus 82 l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~ 149 (166)
++.+|+||||++++|.++|++|++.+|+|.++++++++||..+||||||+||+|||+|||.|||.++.
T Consensus 380 l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~ 447 (837)
T 1kk8_A 380 AEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLD 447 (837)
T ss_dssp HHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 2
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=4.4e-40 Score=298.04 Aligned_cols=149 Identities=46% Similarity=0.766 Sum_probs=136.7
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCch
Q psy2669 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 80 (166)
Q Consensus 1 ~l~L~~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~ 80 (166)
+|+|..+|++|+||++|+..++++||+++|+.+++||++|||+++|+..||+|||||||||||+|.+...++.+.+.+.+
T Consensus 300 ~l~L~~~~~~y~yl~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~ 379 (783)
T 4db1_A 300 MLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTE 379 (783)
T ss_dssp HTTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCH
T ss_pred HhccCCCHHHCccccCCCcccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChH
Confidence 36787789999999999989999999999999999999999999999999999999999999999987666788899999
Q ss_pred hHHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCc
Q psy2669 81 EGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGM 149 (166)
Q Consensus 81 ~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~ 149 (166)
.++.+|+||||++++|.++|++|++.+|+|.++++++++||..+||||||+||+|||+|||.|||.++.
T Consensus 380 ~l~~~a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~ 448 (783)
T 4db1_A 380 EADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLE 448 (783)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 3
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=6.2e-40 Score=294.41 Aligned_cols=148 Identities=20% Similarity=0.307 Sum_probs=132.6
Q ss_pred CCCCCCCCccccccCC-CCCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeec----CCCCcccc
Q psy2669 2 CMLTNDIYDYYNVSQG-KITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR----GREEQAEP 76 (166)
Q Consensus 2 l~L~~~~~~y~yL~~~-~~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~----~~~~~~~v 76 (166)
|+|.++|++|+||++| +..++++||+++|+++++||++|||+++|+..||+|||||||||||+|.+. .+.+.+.+
T Consensus 217 l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v 296 (697)
T 1lkx_A 217 LGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKV 296 (697)
T ss_dssp HTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEE
T ss_pred hcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCccee
Confidence 6786799999999987 578999999999999999999999999999999999999999999999882 12267899
Q ss_pred CCchhHHHHHhhhCCCHHHHHhhhccceeeeC----CeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCc
Q psy2669 77 DGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVG----NEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGM 149 (166)
Q Consensus 77 ~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~----~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~ 149 (166)
.+.+.++.+|+||||++++|.++|++|++.++ ||.+.+|++++||..+||||||+||+|||+|||.|||.++.
T Consensus 297 ~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~ 373 (697)
T 1lkx_A 297 SDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIIN 373 (697)
T ss_dssp SSHHHHHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999864
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=2.5e-39 Score=293.80 Aligned_cols=147 Identities=18% Similarity=0.266 Sum_probs=136.9
Q ss_pred CCCCCCCCccccccCCC-CCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCcccc-CCc
Q psy2669 2 CMLTNDIYDYYNVSQGK-ITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEP-DGT 79 (166)
Q Consensus 2 l~L~~~~~~y~yL~~~~-~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v-~~~ 79 (166)
|+| .+|++|+||++|+ ..++++||+++|+++++||++|||+++|+..||+|||||||||||+|.+.+. +.+.+ .++
T Consensus 277 l~L-~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~-~~~~v~~~~ 354 (795)
T 1w7j_A 277 LRL-GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDS-DSCAIPPKH 354 (795)
T ss_dssp GCC-CCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEET-TEEECCTTC
T ss_pred ccC-CChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCC-cceeecCCh
Confidence 677 6799999999985 6899999999999999999999999999999999999999999999988644 44555 788
Q ss_pred hhHHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCcc
Q psy2669 80 EEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGMK 150 (166)
Q Consensus 80 ~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~~ 150 (166)
+.++.+|+||||++++|.++|++|++.++||.+++|++++||..+||||||+||+|||+|||.|||.++..
T Consensus 355 ~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~ 425 (795)
T 1w7j_A 355 DPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHS 425 (795)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997643
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=3.4e-39 Score=291.62 Aligned_cols=146 Identities=28% Similarity=0.441 Sum_probs=139.3
Q ss_pred CCCCCCCCcccc-ccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCch
Q psy2669 2 CMLTNDIYDYYN-VSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 80 (166)
Q Consensus 2 l~L~~~~~~y~y-L~~~~~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~ 80 (166)
|+| .+|++|+| |++|+..++++||+++|+++++||++|||+++|+..||+|||||||||||+|. ..+++.+.+.+.+
T Consensus 296 l~L-~~~~~y~yll~~g~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~-~~~~~~~~~~~~~ 373 (770)
T 1w9i_A 296 LHL-AGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFE-KGAGEGAVLKDKT 373 (770)
T ss_dssp HTC-CCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCE-ECSSSSEECSCCH
T ss_pred hCC-CChhhccccccCCccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEe-cCCCCccccCChH
Confidence 577 78999999 99999899999999999999999999999999999999999999999999999 4456778899999
Q ss_pred hHHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCc
Q psy2669 81 EGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGM 149 (166)
Q Consensus 81 ~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~ 149 (166)
.++.+|+||||++++|.++|++|++.+++|.++++++++||..+||||||+||+|||+|||.|||.++.
T Consensus 374 ~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~ 442 (770)
T 1w9i_A 374 ALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442 (770)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999764
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.6e-38 Score=294.63 Aligned_cols=147 Identities=23% Similarity=0.437 Sum_probs=140.6
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCch
Q psy2669 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 80 (166)
Q Consensus 1 ~l~L~~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~ 80 (166)
+|+| .+|++|+||++|+..++| ||+++|++++.||++|||+++|+..||+|||||||||||+|.+...++.+.+.+.+
T Consensus 273 ~l~L-~~~~~y~yl~~~~~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~~~~~~ 350 (995)
T 2ycu_A 273 DLLL-EPCSHYRFLTNGPSSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNT 350 (995)
T ss_dssp HTTC-CCGGGCTTSTTCSCSSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEECSCCH
T ss_pred HcCC-CChHHcccccCCccccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCcccccCChH
Confidence 3678 889999999999888999 99999999999999999999999999999999999999999987666788899999
Q ss_pred hHHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCc
Q psy2669 81 EGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGM 149 (166)
Q Consensus 81 ~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~ 149 (166)
.++.+|+||||++++|.++||+|++.+|+|.++++++++||..+||||||+||+|||+|||.|||.++.
T Consensus 351 ~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~ 419 (995)
T 2ycu_A 351 AAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALD 419 (995)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=2.3e-38 Score=298.23 Aligned_cols=148 Identities=27% Similarity=0.502 Sum_probs=141.5
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCch
Q psy2669 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 80 (166)
Q Consensus 1 ~l~L~~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~ 80 (166)
+|+| .+|++|+||++|+..++|+||+++|..|+.||++|||+++|+..||+|||||||||||+|.....++.+.+++.+
T Consensus 303 ~l~l-~~~~~~~yl~~~~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~ 381 (1184)
T 1i84_S 303 DLLL-EGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381 (1184)
T ss_dssp HTTC-CCTTSCSSCTTSSCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSH
T ss_pred HcCC-CChHhCCccCCCCcCCCCCChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChH
Confidence 3678 789999999999989999999999999999999999999999999999999999999999987556788899999
Q ss_pred hHHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCc
Q psy2669 81 EGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGM 149 (166)
Q Consensus 81 ~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~ 149 (166)
.++.+|.||||++++|.++||++++.+|+|.+++++++++|..+||||||+||+|||+|||.+||.++.
T Consensus 382 ~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~ 450 (1184)
T 1i84_S 382 AAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALD 450 (1184)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=3.4e-38 Score=294.31 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=133.5
Q ss_pred CCCCCCCCCccccccCCC-CCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCcccc-CC
Q psy2669 1 MCMLTNDIYDYYNVSQGK-ITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEP-DG 78 (166)
Q Consensus 1 ~l~L~~~~~~y~yL~~~~-~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v-~~ 78 (166)
+|+| .+|++|+||++|+ ..++|+||+++|..++.||++|||+++|+..||+|||||||||||+|...+. +.+.+ .+
T Consensus 276 ~l~L-~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-~~~~~~~~ 353 (1080)
T 2dfs_A 276 TLRL-GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDS-DSCAIPPK 353 (1080)
T ss_dssp GTCC-CCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETT-TEEECCSS
T ss_pred HccC-CCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCC-cceeecCC
Confidence 3677 6799999999984 7899999999999999999999999999999999999999999999998754 44444 78
Q ss_pred chhHHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCcc
Q psy2669 79 TEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGMK 150 (166)
Q Consensus 79 ~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~~ 150 (166)
++.++.+|+||||++++|.++||+|++.++||.+++|++++||..+||||||+||++||+|||.+||.++..
T Consensus 354 ~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~ 425 (1080)
T 2dfs_A 354 HDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHS 425 (1080)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999997643
No 9
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=2.7e-38 Score=293.17 Aligned_cols=146 Identities=27% Similarity=0.424 Sum_probs=139.3
Q ss_pred CCCCCCCCccccccCCC-CCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCch
Q psy2669 2 CMLTNDIYDYYNVSQGK-ITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 80 (166)
Q Consensus 2 l~L~~~~~~y~yL~~~~-~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~ 80 (166)
|+| .+|++|+||++|+ ..++|+||+++|+.+++||++|||+++|+..||+|||||||||||+|....+ +.+.+++.+
T Consensus 296 l~L-~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-~~~~~~~~~ 373 (1010)
T 1g8x_A 296 LHL-AGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKT 373 (1010)
T ss_dssp HTC-CCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT-SSCBCSCCH
T ss_pred hCC-CChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC-CccccCChH
Confidence 567 7899999999985 8899999999999999999999999999999999999999999999998654 778899999
Q ss_pred hHHHHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHHHHHhccCc
Q psy2669 81 EGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITASVMHMGGM 149 (166)
Q Consensus 81 ~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~~~~ 149 (166)
.++.+|+||||++++|.++||+|++.+|+|.++++++++||..+||||||+||+|||+|||.|||.++.
T Consensus 374 ~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~ 442 (1010)
T 1g8x_A 374 ALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLC 442 (1010)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999764
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=9.8e-38 Score=283.20 Aligned_cols=147 Identities=18% Similarity=0.285 Sum_probs=127.8
Q ss_pred CCCCCCCCCccccccCCCC---------------------------CCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 1 MCMLTNDIYDYYNVSQGKI---------------------------TIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 1 ~l~L~~~~~~y~yL~~~~~---------------------------~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
+|+| .+|++|+||++|+. .++++||+++|+++++||++|||+++|+..||+|
T Consensus 258 ~l~L-~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~i 336 (784)
T 2v26_A 258 RLHL-SSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRV 336 (784)
T ss_dssp HTTC-CCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HcCC-CChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3678 68999999999862 3568999999999999999999999999999999
Q ss_pred HHHHHhhcCceEeecCC-CCccccC--CchhHHHHHhhhCCCHHHHHhhhccceee-----eCCeeEEecCChhHHHHhh
Q psy2669 54 TASVMHMGGMKFKQRGR-EEQAEPD--GTEEGDRVSKLLGVDSQQLYTNLVKPRIK-----VGNEFVTQGRNVNQQAFDI 125 (166)
Q Consensus 54 laaILhLGNi~F~~~~~-~~~~~v~--~~~~l~~~a~LLgv~~~~L~~~L~~~~~~-----~~~e~~~~~~~~~~A~~~r 125 (166)
||||||||||+|.+.+. ++.+.+. +.+.++.+|+||||++++|.++|++|++. ++|+.+++|++++||..+|
T Consensus 337 laaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA~~~r 416 (784)
T 2v26_A 337 VAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNAR 416 (784)
T ss_dssp HHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC-----------CEEECCHHHHHHHH
T ss_pred HHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHHHHHHH
Confidence 99999999999998532 3445554 56899999999999999999999999987 6789999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhccC
Q psy2669 126 LGFTKEEKENVYKITASVMHMGG 148 (166)
Q Consensus 126 dalaK~lY~~LF~wiV~~IN~~~ 148 (166)
|||||+||+|||+|||.|||.++
T Consensus 417 dalaK~lY~rLF~wlV~~IN~~l 439 (784)
T 2v26_A 417 DALAKTVYSHLFDHVVNRVNQCF 439 (784)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999976
No 11
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=2.7e-36 Score=279.85 Aligned_cols=146 Identities=18% Similarity=0.308 Sum_probs=122.2
Q ss_pred CCCCCCCCccccccCC---------------------------CCCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2669 2 CMLTNDIYDYYNVSQG---------------------------KITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKIT 54 (166)
Q Consensus 2 l~L~~~~~~y~yL~~~---------------------------~~~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~il 54 (166)
|+| .+|++|+||++| +..++++||+++|+++++||++|||+++|+..||+||
T Consensus 263 l~L-~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~iL 341 (1052)
T 4anj_A 263 LHL-SSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVV 341 (1052)
T ss_dssp HTC-CCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCC-CChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 577 579999999986 3457899999999999999999999999999999999
Q ss_pred HHHHhhcCceEeecCCC-Ccc--ccCCchhHHHHHhhhCCCHHHHHhhhccceee-----eCCeeEEecCChhHHHHhhh
Q psy2669 55 ASVMHMGGMKFKQRGRE-EQA--EPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIK-----VGNEFVTQGRNVNQQAFDIL 126 (166)
Q Consensus 55 aaILhLGNi~F~~~~~~-~~~--~v~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~-----~~~e~~~~~~~~~~A~~~rd 126 (166)
|||||||||+|.+.... +.+ .+.+.+.++.+|+||||++++|.++|+++.+. ++||.+.+|++++||..+||
T Consensus 342 AaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rD 421 (1052)
T 4anj_A 342 AGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARD 421 (1052)
T ss_dssp HHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC-------------CEECCHHHHHHHHH
T ss_pred HHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccccCceEEEecCCHHHHHHHHH
Confidence 99999999999875432 233 44567889999999999999999999988764 58899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhccC
Q psy2669 127 GFTKEEKENVYKITASVMHMGG 148 (166)
Q Consensus 127 alaK~lY~~LF~wiV~~IN~~~ 148 (166)
||||+||++||+|||.+||.++
T Consensus 422 aLAK~LY~rLF~wiV~~IN~~l 443 (1052)
T 4anj_A 422 ALAKTVYSHLFDHVVNRVNQCF 443 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999976
No 12
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=79.03 E-value=9 Score=27.41 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCC------CC----------ccccC------C
Q psy2669 21 IPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGR------EE----------QAEPD------G 78 (166)
Q Consensus 21 ~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~------~~----------~~~v~------~ 78 (166)
.+|.=|..+-+.+...|+.+|+++++...+.. .-+...+...-. +. .+..+ .
T Consensus 42 ADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~------~~~~~~l~~~~~~i~~~~~~~~~~l~~l~~vA~ADG~~~~~E 115 (161)
T 2ou3_A 42 ADGVISPEEKDWALGFCASWGVADWVIEDLKT------YEADEALEEVIARSPQVSMAQRDILLSAIWVSAADGELHEKE 115 (161)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH------CCCCSCHHHHHTTCTTGGGCHHHHHHHHHHHHHTTSSCCHHH
T ss_pred hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh------ccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCCHHH
Confidence 46766788888888888889999888766655 111111110000 00 00011 1
Q ss_pred chhHHHHHhhhCCCHHHHHhhh
Q psy2669 79 TEEGDRVSKLLGVDSQQLYTNL 100 (166)
Q Consensus 79 ~~~l~~~a~LLgv~~~~L~~~L 100 (166)
...+..+|.+||+++.++....
T Consensus 116 ~~~L~~iA~~Lgls~~~~~~l~ 137 (161)
T 2ou3_A 116 KAKIRKMATILGIKEEIVDQLE 137 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 3579999999999998876553
No 13
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=67.45 E-value=3.8 Score=28.69 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=46.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHhhcCceEeec-----------CCCCccccCCchhHH
Q psy2669 21 IPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITAS------VMHMGGMKFKQR-----------GREEQAEPDGTEEGD 83 (166)
Q Consensus 21 ~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~~ilaa------ILhLGNi~F~~~-----------~~~~~~~v~~~~~l~ 83 (166)
.+|.=+..+-+.+.+.+..+|+++++...++...-. .=.+.++..... ..++.........+.
T Consensus 31 ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr 110 (133)
T 2h5n_A 31 ADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWT 110 (133)
T ss_dssp TTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 467667778888888888899999888877775420 001111110000 000000111236799
Q ss_pred HHHhhhCCCHHHHHhhh
Q psy2669 84 RVSKLLGVDSQQLYTNL 100 (166)
Q Consensus 84 ~~a~LLgv~~~~L~~~L 100 (166)
.+|.+||+++.++.++.
T Consensus 111 ~ia~~Lgls~~d~~~~~ 127 (133)
T 2h5n_A 111 LISTLCGLPTMTVMEAI 127 (133)
T ss_dssp HHHHHHTCCCCCHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 99999999988875443
No 14
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ...
Probab=64.25 E-value=14 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCCCCcHHHHHH-HHHHHHHcCCCHHHHHHHHHH
Q psy2669 21 IPGMDDGEEFQL-TDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 21 ~~~~dD~~~f~~-~~~al~~lg~~~~e~~~i~~i 53 (166)
.+|+.|...|+. .++.|+.++++++++..|..-
T Consensus 169 f~~~~~~~~~k~~fr~~Ld~~~l~~~e~~~ii~e 202 (233)
T 1n45_A 169 FPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEE 202 (233)
T ss_dssp CTTCSCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456678999999 999999999999988776543
No 15
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2
Probab=56.14 E-value=24 Score=26.15 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=26.6
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 21 IPGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 21 ~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
.++..|.+.|+..+..|+.+.++++++..|.
T Consensus 149 ~~~~~~~~~wk~f~~~Ld~l~~d~~~~~~ii 179 (198)
T 1sk7_A 149 EPEGGRAQGWKSFVAILDGIELNEEEERLAA 179 (198)
T ss_dssp CCTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4567799999999999999999998887764
No 16
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=52.54 E-value=19 Score=21.93 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhhhc
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~ 101 (166)
.++.+....|++..+......+=- =.+.+++ .+....+.+.+..+|..||++.+.|...+.
T Consensus 18 ~l~~~R~~~gltq~elA~~~gis~--~~is~~e-------~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~ 78 (83)
T 3f6w_A 18 LLLEARSAAGITQKELAARLGRPQ--SFVSKTE-------NAERRLDVIEFMDFCRGIGTDPYALLSKLE 78 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCH--HHHHHHH-------TTSSCCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH-------CCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 466667778999876655433210 0111111 111234567899999999999999887654
No 17
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
Probab=49.99 E-value=40 Score=25.16 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=25.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 21 IPGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 21 ~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
.++..|.+.|+..+..|+.+.++++++..|.
T Consensus 144 ~~~~~~~~~w~~fr~~Ld~l~~d~~~~~~ii 174 (209)
T 1j77_A 144 PHPDGRGKHWRAFVEHLNALNLTPEAEAEAI 174 (209)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3566788889999999999999998877663
No 18
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=45.66 E-value=53 Score=20.48 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhhh
Q psy2669 30 FQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNL 100 (166)
Q Consensus 30 f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L 100 (166)
+..+...|+.+|+++.+ +.||..+..-|.+ ....+|+.+|++...+.+.|
T Consensus 6 ~~~~~~~l~~~~l~~~~----~~il~~l~~~~~~-----------------s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 6 LGELVKALEKLSFKPSD----VRIYSLLLERGGM-----------------RVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHHTCCCHHH----HHHHHHHHHHCCB-----------------CHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHH----HHHHHHHHHcCCC-----------------CHHHHHHHHCCCHHHHHHHH
Confidence 45667788899999765 3455444443332 25678888999988776554
No 19
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=44.77 E-value=3.9 Score=26.79 Aligned_cols=27 Identities=4% Similarity=0.046 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHHcCCCHHHHHHH
Q psy2669 24 MDDGEEFQLTDQAFDILGFTKEEKENV 50 (166)
Q Consensus 24 ~dD~~~f~~~~~al~~lg~~~~e~~~i 50 (166)
+-|.-.+.++++.++.+|+|+.+++.|
T Consensus 6 ia~~~~~~~wK~~~R~LGlse~~Id~I 32 (86)
T 3oq9_A 6 IAEDMTIQEAKKFARENNIKEGKIDEI 32 (86)
T ss_dssp HHHHSCHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCHhHHHHH
Confidence 334556888999999999999999988
No 20
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=44.73 E-value=12 Score=30.20 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 20 TIPGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 20 ~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
..+|..|..+|..+.++|.. |++++++..|+
T Consensus 270 ~p~gl~d~s~~p~L~~~L~~-g~se~~i~ki~ 300 (318)
T 3neh_A 270 HVKGLEHVGKYQSFLETLEK-HYTKEEIEGFA 300 (318)
T ss_dssp CBBTBSSGGGHHHHHHHHTT-TSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 34678899999999999999 99999998874
No 21
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=43.03 E-value=43 Score=20.18 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 29 EFQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 29 ~f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
...+...||..|||++.|...+.+-
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3468999999999999877765443
No 22
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=42.93 E-value=42 Score=20.10 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 27 GEEFQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 27 ~~~f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
..+|-.++..-+.+||+-+|+..++..
T Consensus 12 d~ewl~LI~~Ak~lGlsleEIrefL~l 38 (57)
T 1b0n_B 12 DQEWVELMVEAKEANISPEEIRKYLLL 38 (57)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356888888889999999999888654
No 23
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=42.26 E-value=33 Score=21.18 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q psy2669 32 LTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~i 53 (166)
++..+|..+|++.+++..+|+.
T Consensus 48 El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 48 EFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHHHH
Confidence 3345566667887777766654
No 24
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=41.65 E-value=58 Score=26.34 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 27 GEEFQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 27 ~~~f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
..+|+.+...|.-+||+++++..++..
T Consensus 43 ~~~~e~~l~~L~d~Gfs~~~i~~il~~ 69 (335)
T 4fp9_B 43 SLELERVMSSLLDMGFSNAHINELLSV 69 (335)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 357999999999999999988776654
No 25
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=41.37 E-value=30 Score=24.07 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.9
Q ss_pred chhHHHHHhhhCCCHHHH
Q psy2669 79 TEEGDRVSKLLGVDSQQL 96 (166)
Q Consensus 79 ~~~l~~~a~LLgv~~~~L 96 (166)
...+..+|.+||+++.++
T Consensus 132 ~~~L~~ia~~Lgl~~~~~ 149 (153)
T 2jxu_A 132 KSAVREIARSLGFDPAEF 149 (153)
T ss_dssp HHHHHHHHHHTTSCSSCC
T ss_pred HHHHHHHHHHhCcCHHHH
Confidence 467999999999987654
No 26
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=41.18 E-value=22 Score=20.38 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHH
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLY 97 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~ 97 (166)
.++..+...|++..+......+=-. .+.+++ .....++.+.+..+|..||++.+.|.
T Consensus 9 ~l~~~r~~~g~s~~~lA~~~gis~~--~i~~~e-------~g~~~~~~~~l~~i~~~l~~~~~~l~ 65 (68)
T 2r1j_L 9 RIRARRKKLKIRQAALGKMVGVSNV--AISQWE-------RSETEPNGENLLALSKALQCSPDYLL 65 (68)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHH--HHHHHH-------TTSSCCBHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHH--HHHHHH-------cCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 4666777778887665544321100 011111 11122356778999999999998875
No 27
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=40.45 E-value=14 Score=22.51 Aligned_cols=66 Identities=11% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhhhc
Q psy2669 27 GEEFQ-LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 27 ~~~f~-~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~ 101 (166)
...|. .++..++..|++..+......|=-+ .+++++ .+....+.+.+..+|..||++.++|...|.
T Consensus 10 ~~~l~~~l~~~r~~~gltq~~lA~~~gvs~~--~is~~e-------~g~~~~~~~~~~~ia~~l~v~~~~l~~~l~ 76 (80)
T 3kz3_A 10 ARRLKAIWEKKKNELGLSYESVADKMGMGQS--AVAALF-------NGINALNAYNAALLAKILKVSVEEFSPSIA 76 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHH--HHHHHH-------TTSSCCCHHHHHHHHHHHTSCGGGTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHH--HHHHHH-------cCCCCCCHHHHHHHHHHhCCCHHHHhHHHH
Confidence 34444 3445556778887665544332100 111111 111234567899999999999987766553
No 28
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=40.42 E-value=29 Score=22.33 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q psy2669 32 LTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~i 53 (166)
+++.+|..+|++.++...||+.
T Consensus 32 el~~~l~~~~l~~~~l~~i~~~ 53 (99)
T 1qjt_A 32 DAAAFLKKSGLPDLILGKIWDL 53 (99)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4455667779999888888875
No 29
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=40.14 E-value=26 Score=20.64 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
.++..+...|++..+......+=.. .+.+++ .+...++.+.+..+|..||++.+.|..
T Consensus 9 ~l~~~r~~~gls~~~lA~~~gis~~--~i~~~e-------~g~~~~~~~~l~~ia~~l~~~~~~l~~ 66 (76)
T 1adr_A 9 RIRARRKKLKIRQAALGKMVGVSNV--AISQWE-------RSETEPNGENLLALSKALQCSPDYLLK 66 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHH--HHHHHH-------TTSSCCCHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHH--HHHHHH-------cCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 4666777778887665544322100 011111 111224567789999999999988764
No 30
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=38.95 E-value=21 Score=23.98 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=18.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHH
Q psy2669 123 FDILGFTKEEKENVYKITASVM 144 (166)
Q Consensus 123 ~~rdalaK~lY~~LF~wiV~~I 144 (166)
.++|+++..||..|++-++.-|
T Consensus 6 ~t~~~~s~~Iy~nLl~~~i~dI 27 (99)
T 3mhs_C 6 ITIDSISNGILNNLLTTLIQDI 27 (99)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999998877644
No 31
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=38.47 E-value=35 Score=21.54 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~i 53 (166)
.+++.+|..+|++.++...||+.
T Consensus 30 ~el~~~l~~~g~~~~~~~~i~~~ 52 (95)
T 1c07_A 30 LEVREIFLKTGLPSTLLAHIWSL 52 (95)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34556666778898888887764
No 32
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=36.71 E-value=42 Score=19.21 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
.++..+...|++..+......+=.. .+.+++ .+ ... +... +..+|..||++.+.|..
T Consensus 5 ~l~~~r~~~glsq~~lA~~~gis~~--~i~~~e-----~g-~~~-~~~~-l~~la~~l~~~~~~l~~ 61 (69)
T 1r69_A 5 RVKSKRIQLGLNQAELAQKVGTTQQ--SIEQLE-----NG-KTK-RPRF-LPELASALGVSVDWLLN 61 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHH--HHHHHH-----TT-SCS-SCTT-HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHH--HHHHHH-----cC-CCC-CchH-HHHHHHHHCcCHHHHhC
Confidence 4667777888887665544322100 111111 11 111 2233 89999999999988764
No 33
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=34.31 E-value=45 Score=20.80 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 26 DGEEFQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 26 D~~~f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
+.+++. .+|..+|++.++...||+.
T Consensus 27 ~~~el~---~~l~~~g~~~~~~~~i~~~ 51 (92)
T 1fi6_A 27 PGSAAK---EFFTKSKLPILELSHIWEL 51 (92)
T ss_dssp EHHHHH---HHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHH---HHHHHcCCCHHHHHHHHHH
Confidence 455544 5556678998888887763
No 34
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=33.61 E-value=42 Score=22.07 Aligned_cols=22 Identities=5% Similarity=-0.003 Sum_probs=15.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q psy2669 32 LTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~i 53 (166)
+++..|..+|++.++...||+.
T Consensus 35 el~~~l~~~gl~~~el~~i~~~ 56 (106)
T 1eh2_A 35 KVKPVLLNSKLPVDILGRVWEL 56 (106)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4455666678888888877764
No 35
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=33.01 E-value=8.8 Score=27.61 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=31.2
Q ss_pred CHHHHHhhhccceeeeCCeeEEecCCh--hHHHHhhhhhhHHHHHHHHHH
Q psy2669 92 DSQQLYTNLVKPRIKVGNEFVTQGRNV--NQQAFDILGFTKEEKENVYKI 139 (166)
Q Consensus 92 ~~~~L~~~L~~~~~~~~~e~~~~~~~~--~~A~~~rdalaK~lY~~LF~w 139 (166)
..+.|.+++.++... ...+..|.+. .--...|.++.--+|.|||.|
T Consensus 47 ~Le~L~~AV~s~g~~--t~CV~iprsldgRlqv~~rk~~PHVi~cRlwRW 94 (144)
T 1ozj_A 47 QLDELEKAITTQNVN--TKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRW 94 (144)
T ss_dssp CHHHHHHHHHHCCTT--SCCCEEECCTTSCEEETTEEECHHHHHHHHHTC
T ss_pred cHHHHHHHHhCCCCC--CCeEEcccCCCccccccCccCCCeeEEEEeeeC
Confidence 568888899887642 3445555442 111245778888999999999
No 36
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A*
Probab=32.90 E-value=82 Score=24.44 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=25.0
Q ss_pred CCCCCcHHHH-HHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 21 IPGMDDGEEF-QLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 21 ~~~~dD~~~f-~~~~~al~~lg~~~~e~~~i~~i 53 (166)
.++..|.+.| +..++.|+.+.++++++..|..-
T Consensus 189 f~g~~d~~~~k~~fr~~Ld~l~ld~ee~~~iI~e 222 (264)
T 2q32_A 189 FENVDNAQQFKQLYRARMNALDLNMKTKERIVEE 222 (264)
T ss_dssp CTTCSCHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4566677654 67899999999999988877543
No 37
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=32.45 E-value=40 Score=21.88 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhh
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTN 99 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~ 99 (166)
..++......|++..+......+=- =.+++++ .+...++.+.+..+|..|||+.+.|...
T Consensus 12 ~~l~~~r~~~glsq~~lA~~~gis~--~~i~~~e-------~g~~~p~~~~l~~la~~l~v~~~~l~~~ 71 (114)
T 3op9_A 12 ENLSRLKKEHGLKNHQIAELLNVQT--RTVAYYM-------SGETKPDIEKLIRLATYFHLSIDELVGY 71 (114)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCH--HHHHHHH-------HTSSCCCHHHHHHHHHHHTCCHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH-------cCCCCCCHHHHHHHHHHhCCCHHHHhcC
Confidence 3566677778999766554432200 0111111 1112356788999999999999988643
No 38
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=32.20 E-value=34 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.3
Q ss_pred HHHHHhhhCCCHHHHHhhhcc
Q psy2669 82 GDRVSKLLGVDSQQLYTNLVK 102 (166)
Q Consensus 82 l~~~a~LLgv~~~~L~~~L~~ 102 (166)
...+|++|||+...|.+.+-.
T Consensus 35 ~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 358999999999999887643
No 39
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A*
Probab=32.19 E-value=67 Score=25.04 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=25.5
Q ss_pred CCCCCcHHH-HHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 21 IPGMDDGEE-FQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 21 ~~~~dD~~~-f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
.+|+.|... ++..++.|+.++++++++..|..-
T Consensus 169 f~g~~d~~~~k~~fr~~Ld~l~ld~ee~~~iI~e 202 (267)
T 1j02_A 169 FPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEE 202 (267)
T ss_dssp CTTCSCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456667776 577999999999999988876543
No 40
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=32.18 E-value=55 Score=19.65 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhh
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTN 99 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~ 99 (166)
.++......|++..+......+=. =.+.+++ .+...++.+.+..+|..||++.+.|...
T Consensus 15 ~lk~~R~~~glsq~~lA~~~gis~--~~i~~~e-------~g~~~~~~~~l~~ia~~l~v~~~~l~~~ 73 (82)
T 3s8q_A 15 VIKKIRLEKGMTQEDLAYKSNLDR--TYISGIE-------RNSRNLTIKSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCH--HHHHHHH-------TTCCCCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCH--HHHHHHH-------CCCCCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 566666778999766554432210 0111111 1112345678999999999999888643
No 41
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=31.99 E-value=29 Score=20.49 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHHHhhhCCCHHHHHhhhc
Q psy2669 83 DRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 83 ~~~a~LLgv~~~~L~~~L~ 101 (166)
..+|++|||+...|.+.|-
T Consensus 37 ~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 37 RKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 4799999999999987664
No 42
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=31.38 E-value=44 Score=17.89 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=16.1
Q ss_pred HcCCCHHHHHHHHHHHHHHHh
Q psy2669 39 ILGFTKEEKENVYKITASVMH 59 (166)
Q Consensus 39 ~lg~~~~e~~~i~~ilaaILh 59 (166)
.+|-..+...+-+.+|+|||.
T Consensus 11 algqdtekmeeqldllsaild 31 (40)
T 4h62_K 11 ALGQDTEKMEEQLDLLSAILD 31 (40)
T ss_pred hhcccHHHHHHHHHHHHHHcC
Confidence 457777777778888999874
No 43
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=31.26 E-value=11 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHhhhccceeeeCCeeEEecCChh--HHHHhhhhhhHHHHHHHHHHH
Q psy2669 93 SQQLYTNLVKPRIKVGNEFVTQGRNVN--QQAFDILGFTKEEKENVYKIT 140 (166)
Q Consensus 93 ~~~L~~~L~~~~~~~~~e~~~~~~~~~--~A~~~rdalaK~lY~~LF~wi 140 (166)
-++|.+++.++.-. ....|+.|.+.+ --...|..+.--||.|||.|=
T Consensus 46 Le~L~~Av~s~g~~-~s~CV~ipr~ldgrlqv~~rk~~PHvi~cRlwRWP 94 (132)
T 3qsv_A 46 LDSLITAITTNGAH-PSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWP 94 (132)
T ss_dssp HHHHHHHHHTTTSS-CCCCCEEECCTTSCEEETTEEECHHHHHHHHHTCT
T ss_pred HHHHHHHHhCCCCC-CCCeEEeeccccccccccccccCcceeEEEEecCC
Confidence 46777888776421 123455555421 112347888999999999993
No 44
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=30.97 E-value=55 Score=21.37 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
..++......|++..+......+=- =.+++++ .+....+.+.+..+|+.||++.+.|..
T Consensus 24 ~~lr~~R~~~gltq~elA~~~gis~--~~is~~E-------~G~~~p~~~~l~~ia~~l~v~~~~l~~ 82 (114)
T 3vk0_A 24 YNMRLFRVNKGWSQEELARQCGLDR--TYVSAVE-------RKRWNIALSNIEKMAAALGVAAYQLLL 82 (114)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCH--HHHHHHT-------TTCCCCCHHHHHHHHHHHTSCHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH-------cCCCCCCHHHHHHHHHHhCCCHHHHhC
Confidence 3566677788999877655432210 1112221 111234668899999999999987753
No 45
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=30.64 E-value=46 Score=22.82 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Q psy2669 28 EEFQLTDQAFDILGFTKEEKENV 50 (166)
Q Consensus 28 ~~f~~~~~al~~lg~~~~e~~~i 50 (166)
-.+..+++.++.+|+++.+++.|
T Consensus 18 m~~~~wK~laR~LGlse~~Id~I 40 (115)
T 3ezq_A 18 MTLSQVKGFVRKNGVNEAKIDEI 40 (115)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHhhHHHH
Confidence 35778889999999999999987
No 46
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=30.54 E-value=75 Score=21.51 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCc----hhHHHHHhhhCCCHHHHHhhhccc
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGT----EEGDRVSKLLGVDSQQLYTNLVKP 103 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~----~~l~~~a~LLgv~~~~L~~~L~~~ 103 (166)
.++++-+..|+|.++...-..+=- =++++++ .+......+. ..+...|+.||++.++|....-..
T Consensus 7 ~lr~~R~~~gltq~elA~~~gis~--~~is~iE-----~g~~~~~~~~~~~~~~l~~ia~~L~v~~~~l~~~~~~~ 75 (130)
T 3fym_A 7 ALKGRRERLGMTLTELEQRTGIKR--EMLVHIE-----NNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDE 75 (130)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCCCH--HHHHHHH-----TTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH-----CCCCCCCchhhhHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 455666677888777665433311 1222222 1111111222 568999999999999998776543
No 47
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=30.25 E-value=84 Score=18.28 Aligned_cols=58 Identities=7% Similarity=0.117 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
.++..+...|++..+......+=-. .+.+++ .+....+.+.+..+|..||++.+.|..
T Consensus 14 ~l~~~r~~~glsq~~lA~~~gis~~--~i~~~e-------~g~~~~~~~~l~~la~~l~~~~~~l~~ 71 (77)
T 2b5a_A 14 TLKKIRTQKGVSQEELADLAGLHRT--YISEVE-------RGDRNISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHH--HHHHHH-------TTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHH--HHHHHH-------CCCCCCCHHHHHHHHHHhCcCHHHHhc
Confidence 5667777889997665544321100 011111 111134567789999999999988864
No 48
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.15 E-value=31 Score=21.71 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhh
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTN 99 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~ 99 (166)
..++..+...|++..+......|=.. .+.+++ .+....+.+.+..+|..||++.+.|...
T Consensus 12 ~~lk~~r~~~glsq~~lA~~~gis~~--~is~~e-------~G~~~p~~~~l~~ia~~l~v~~~~l~~~ 71 (94)
T 2kpj_A 12 ENLNSYIAKSEKTQLEIAKSIGVSPQ--TFNTWC-------KGIAIPRMGKVQALADYFNINKSDLIED 71 (94)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHTCCHH--HHHHHH-------TTSCCCCHHHHHHHHHHHTCCTHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHH--HHHHHH-------hCCCCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 45667777889997665544322110 011111 1112335678999999999999988644
No 49
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.14 E-value=37 Score=20.23 Aligned_cols=22 Identities=5% Similarity=0.160 Sum_probs=18.4
Q ss_pred HHHHHhhhCCCHHHHHhhhccc
Q psy2669 82 GDRVSKLLGVDSQQLYTNLVKP 103 (166)
Q Consensus 82 l~~~a~LLgv~~~~L~~~L~~~ 103 (166)
...+|++|||+...|.++....
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHCC
Confidence 4679999999999999887653
No 50
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.07 E-value=27 Score=20.46 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHH
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLY 97 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~ 97 (166)
..++..+...|++..+......+=.. .+.+++ .+...++.+.+..+|..||++.+.|.
T Consensus 16 ~~l~~~r~~~g~s~~~lA~~~gis~~--~i~~~e-------~g~~~~~~~~l~~l~~~l~~~~~~l~ 73 (74)
T 1y7y_A 16 QRLRELRTAKGLSQETLAFLSGLDRS--YVGGVE-------RGQRNVSLVNILKLATALDIEPRELF 73 (74)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHH--HHHHHH-------TTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHH--HHHHHH-------CCCCCCCHHHHHHHHHHhCcCHHHHc
Confidence 35667777889997665544322100 011111 11123456778999999999987653
No 51
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.74 E-value=56 Score=20.25 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhhh
Q psy2669 34 DQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNL 100 (166)
Q Consensus 34 ~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L 100 (166)
.+.|..++++++... +||..+-..|+=. .-....+|+.||++.....+.|
T Consensus 3 ~~~~~~~~~~~~~~~---~IL~~L~~~~~~~--------------~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 3 SSHFQELSIYQDQEQ---RILKFLEELGEGK--------------ATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHTCTHHHHHHHH---HHHHHHHHHCSSS--------------CEEHHHHHHHHCCCHHHHHHHH
T ss_pred hHhhcccCCCHHHHH---HHHHHHHHcCCCC--------------CcCHHHHHHHHCcCHHHHHHHH
Confidence 456777777766543 4555555665200 1225689999999988776665
No 52
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=29.65 E-value=21 Score=24.50 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHH
Q psy2669 29 EFQLTDQAFDILGFTKEEKENV 50 (166)
Q Consensus 29 ~f~~~~~al~~lg~~~~e~~~i 50 (166)
-|..++..++.+|+++.+++.|
T Consensus 24 ~~~~WK~~aRkLGLse~~Id~I 45 (112)
T 1ich_A 24 PPLRWKEFVKRLGLSDHEIDRL 45 (112)
T ss_dssp CSTTHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHH
Confidence 3456678899999999998877
No 53
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=29.56 E-value=39 Score=27.78 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 21 IPGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 21 ~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
.+|..|..+|..+.++|..-|++++++..|+
T Consensus 313 p~gl~d~s~~p~L~~~L~~rG~se~~i~ki~ 343 (364)
T 3ly0_A 313 PQGIADVTGLPALQAAMRAHGYDEPLMRKLC 343 (364)
T ss_dssp CTTTCSGGGHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4678899999999999999999999998874
No 54
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=29.45 E-value=73 Score=21.28 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=24.9
Q ss_pred HHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHH
Q psy2669 85 VSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITA 141 (166)
Q Consensus 85 ~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV 141 (166)
+...||.+...|.+.|.++. |.+ ..-.--|.+|-|+++|+-
T Consensus 41 A~~VLgrsQgtlS~lL~~Pk----------pW~------~L~~~Gre~yiRM~nWL~ 81 (101)
T 1x2l_A 41 GHYVLGLSQGSVSEILARPK----------PWR------KLTVKGKEPFIKMKQFLS 81 (101)
T ss_dssp HHHTTCSCHHHHHHHHHCCC----------CGG------GCCHHHHHHHHHHHHHHT
T ss_pred HHHHHccccchHHHHhcCCC----------CHH------HHhHhhhHHHHHHHHHcc
Confidence 34456666666666665543 111 111235889999999985
No 55
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=29.44 E-value=59 Score=18.60 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
..++..+...|++..+......+=-. .+.+++ .+ ... + ...+..+|..||++.+.|..
T Consensus 6 ~~l~~~r~~~glsq~~lA~~~gis~~--~i~~~e-----~g-~~~-~-~~~l~~i~~~l~~~~~~l~~ 63 (71)
T 1zug_A 6 ERLKKRRIALKMTQTELATKAGVKQQ--SIQLIE-----AG-VTK-R-PRFLFEIAMALNCDPVWLQY 63 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHH--HHHHHH-----TT-CCS-S-CSTHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHH--HHHHHH-----cC-CCC-C-hHHHHHHHHHHCCCHHHHhC
Confidence 35667777888887665544322100 111111 11 111 2 23389999999999988764
No 56
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=29.43 E-value=12 Score=26.16 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHhhhccceeeeCCeeEEecCCh--hHHHHhhhhhhHHHHHHHHHH
Q psy2669 93 SQQLYTNLVKPRIKVGNEFVTQGRNV--NQQAFDILGFTKEEKENVYKI 139 (166)
Q Consensus 93 ~~~L~~~L~~~~~~~~~e~~~~~~~~--~~A~~~rdalaK~lY~~LF~w 139 (166)
-+.|.+++.++.. ....++.|.+. .-....|-++.--||.|||.|
T Consensus 40 Le~L~~Av~~~~~--~s~CV~ipr~ldgrlqv~~~k~~Phvi~crl~RW 86 (124)
T 3kmp_A 40 MEELEKALSCPGQ--PSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRW 86 (124)
T ss_dssp HHHHHHHHHCTTS--CCCCCEEECCSSSCEEETTEEECHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCC--CCCeEEeccccccccccCCcccCceeeEEEeecC
Confidence 4677888876532 23345555432 111235777888999999999
No 57
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.36 E-value=30 Score=21.80 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=24.1
Q ss_pred CchhHHHHHhhhCCCHHHHHhhhccce
Q psy2669 78 GTEEGDRVSKLLGVDSQQLYTNLVKPR 104 (166)
Q Consensus 78 ~~~~l~~~a~LLgv~~~~L~~~L~~~~ 104 (166)
+.+.+..+|.-+|++.+.+..++++++
T Consensus 31 s~eei~~LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 31 NSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 457799999999999999999999876
No 58
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=29.19 E-value=33 Score=27.61 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=28.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 20 TIPGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 20 ~~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
..+|..|...|..+.++|..-|++++++..|+
T Consensus 280 ~~~gl~~~~~~~~l~~~L~~~G~se~~i~ki~ 311 (325)
T 2i5g_A 280 NPLGIRTVGEFPNLTETLLKRGMPERVVRKVM 311 (325)
T ss_dssp CCBTCSSGGGTHHHHHHHHHTTCCHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34578899999999999999999999999885
No 59
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=28.35 E-value=30 Score=21.95 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHh--hcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHH
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMH--MGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLY 97 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILh--LGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~ 97 (166)
.++......|++..+......+=-.-+. +++++ .+...++.+.+..+|+.|||+.+.|.
T Consensus 5 ~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E-------~g~~~p~~~~l~~la~~l~v~~~~l~ 65 (98)
T 3lfp_A 5 RLKDARLRAGISQEKLGVLAGIDEASASARMNQYE-------KGKHAPDFEMANRLAKVLKIPVSYLY 65 (98)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHH-------HTSSCCCHHHHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHH-------CCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 4566667778887665544322111000 11111 11134567789999999999998664
No 60
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.47 E-value=42 Score=21.43 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=16.6
Q ss_pred hHHHHHhhhCCCHHHHHhhh
Q psy2669 81 EGDRVSKLLGVDSQQLYTNL 100 (166)
Q Consensus 81 ~l~~~a~LLgv~~~~L~~~L 100 (166)
.++..|++|++++++..+.+
T Consensus 32 sl~~La~ll~ls~~~vE~~l 51 (84)
T 1ufm_A 32 TFEELGALLEIPAAKAEKIA 51 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHHH
Confidence 58899999999988776654
No 61
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=27.43 E-value=43 Score=28.02 Aligned_cols=31 Identities=13% Similarity=0.404 Sum_probs=28.2
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 21 IPGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 21 ~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
.+|..|..+|..+.++|..-|++++++..|+
T Consensus 367 ~~gl~dvs~~p~L~~~Ll~rG~se~di~ki~ 397 (417)
T 2rag_A 367 MDGFEDITDLPKITARLKAEGYSDADIEAIW 397 (417)
T ss_dssp BBTBSSGGGTHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678999999999999999999999998875
No 62
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=26.86 E-value=52 Score=18.36 Aligned_cols=31 Identities=6% Similarity=-0.046 Sum_probs=18.4
Q ss_pred CChhHHHHhhhhhhHHHHHHHHHHHHHHHhc
Q psy2669 116 RNVNQQAFDILGFTKEEKENVYKITASVMHM 146 (166)
Q Consensus 116 ~~~~~A~~~rdalaK~lY~~LF~wiV~~IN~ 146 (166)
+.+..+.....++...+|.|+|+.+..-|-.
T Consensus 4 L~Vkr~~~~~~t~~e~ih~~~~dhlmaGiEd 34 (43)
T 2bec_B 4 LAVKKKQETKRSINEEIHTQFLDHLLTGIED 34 (43)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccccccccHHHHHhhhhhhhhhhchHh
Confidence 3445555666789999999999999887755
No 63
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=26.76 E-value=38 Score=27.90 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHH
Q psy2669 22 PGMDDGEEFQLTDQAFDILGFTKEEKENVY-----KITASVM 58 (166)
Q Consensus 22 ~~~dD~~~f~~~~~al~~lg~~~~e~~~i~-----~ilaaIL 58 (166)
+|..|...|..+.++|..-|++++++..|+ +++..+.
T Consensus 297 ~gl~d~~~~p~l~~~L~~~G~se~~i~ki~g~N~lRvl~~v~ 338 (369)
T 1itu_A 297 EGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVE 338 (369)
T ss_dssp BTCSSTTCHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHhHhHHHHHHHHH
Confidence 478899999999999999999999998874 5555544
No 64
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=26.40 E-value=87 Score=17.91 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHH--HHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHH
Q psy2669 32 LTDQAFDILGFTKEEKENVYK--ITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLY 97 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~--ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~ 97 (166)
.++......|++..+...... +=.. .+++++ .+...++.+.+..+|..||++.+.|.
T Consensus 12 ~l~~~r~~~glsq~~lA~~~g~~is~~--~i~~~e-------~g~~~~~~~~l~~la~~l~v~~~~l~ 70 (71)
T 2ewt_A 12 KLRAIRTQQGLSLHGVEEKSQGRWKAV--VVGSYE-------RGDRAVTVQRLAELADFYGVPVQELL 70 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTSSCHH--HHHHHH-------HTCSCCCHHHHHHHHHHHTSCGGGGC
T ss_pred HHHHHHHHcCCCHHHHHHHHCCcCCHH--HHHHHH-------CCCCCCCHHHHHHHHHHHCcCHHHHc
Confidence 556666778999766554332 0000 111111 11123456789999999999987663
No 65
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=26.27 E-value=61 Score=21.07 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=37.4
Q ss_pred HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhh
Q psy2669 27 GEEFQ-LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTN 99 (166)
Q Consensus 27 ~~~f~-~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~ 99 (166)
...|- .++......|++..+......|= -=++++++ .+....+.+.+..+|..||++.+.|...
T Consensus 26 ~~~~g~~l~~~R~~~glsq~~lA~~~gis--~~~is~~E-------~g~~~~~~~~l~~la~~l~v~~~~l~~~ 90 (117)
T 3f52_A 26 REALGAALRSFRADKGVTLRELAEASRVS--PGYLSELE-------RGRKEVSSELLASVCHALGASVADVLIE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSC--HHHHHHHH-------TTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcC--HHHHHHHH-------CCCCCCCHHHHHHHHHHhCCCHHHHHhc
Confidence 34454 45566667799987655443221 01112221 1112346788999999999999877643
No 66
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=26.10 E-value=1.7e+02 Score=20.46 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=39.3
Q ss_pred ccCCchhHHHHHhhhCCCHHHHHhhhc----------------------cceeeeCCeeEEecCChhHHHHhh-hhhhHH
Q psy2669 75 EPDGTEEGDRVSKLLGVDSQQLYTNLV----------------------KPRIKVGNEFVTQGRNVNQQAFDI-LGFTKE 131 (166)
Q Consensus 75 ~v~~~~~l~~~a~LLgv~~~~L~~~L~----------------------~~~~~~~~e~~~~~~~~~~A~~~r-dalaK~ 131 (166)
.+.+.+.+..++.-+|++.+.+..++. ++++.++|+.+..+-.+. .. +.
T Consensus 103 ~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~~~~----~~~e~---- 174 (195)
T 3hd5_A 103 RLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTPAFAVGGRYMTSPVLAG----NDYAG---- 174 (195)
T ss_dssp CCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECTTTTT----GGGTT----
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCceEEECCEEEeCccccC----ChHHH----
Confidence 345677788888889999987766543 445666676665543321 11 22
Q ss_pred HHHHHHHHHHHHHhcc
Q psy2669 132 EKENVYKITASVMHMG 147 (166)
Q Consensus 132 lY~~LF~wiV~~IN~~ 147 (166)
+..+.++|+.+.|.+
T Consensus 175 -~~~~i~~L~~~~~~~ 189 (195)
T 3hd5_A 175 -ALKVVDQLIVQSREG 189 (195)
T ss_dssp -HHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHhcc
Confidence 234556778777764
No 67
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.97 E-value=45 Score=19.90 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhhh
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNL 100 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L 100 (166)
.++..+...|++..+......|=.. .+.+++ . +....+.+.+..+|..||++.+.|...-
T Consensus 6 ~lk~~r~~~glsq~~lA~~~gis~~--~i~~~e-----~--g~~~p~~~~l~~ia~~l~v~~~~l~~~~ 65 (77)
T 2k9q_A 6 ELKVERIRLSLTAKSVAEEMGISRQ--QLCNIE-----Q--SETAPVVVKYIAFLRSKGVDLNALFDRI 65 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHH--HHHHHH-----T--CCSCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHH--HHHHHH-----c--CCCCCCHHHHHHHHHHhCcCHHHHhCcc
Confidence 4566677778887665544322100 111111 0 1112345678899999999999887543
No 68
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=25.86 E-value=74 Score=22.22 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=3.6
Q ss_pred CCHHHHHHH
Q psy2669 42 FTKEEKENV 50 (166)
Q Consensus 42 ~~~~e~~~i 50 (166)
|+.+|...+
T Consensus 67 Is~~El~~~ 75 (139)
T 2jq6_A 67 ITGANAKKE 75 (139)
T ss_dssp EEHHHHHHH
T ss_pred ECHHHHHHH
Confidence 344444433
No 69
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=25.74 E-value=47 Score=21.10 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHhhhCCCHHHHHhhhc
Q psy2669 82 GDRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 82 l~~~a~LLgv~~~~L~~~L~ 101 (166)
...+|++|||+...|.+.|-
T Consensus 57 ~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 57 VSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 35899999999999987764
No 70
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.26 E-value=98 Score=17.42 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH
Q psy2669 28 EEFQLTDQAFDILGFTKEEKENVYK 52 (166)
Q Consensus 28 ~~f~~~~~al~~lg~~~~e~~~i~~ 52 (166)
..+.+.++.|..|||+.++...-++
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~ 30 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALR 30 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467778889999999876554443
No 71
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=24.92 E-value=39 Score=28.27 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=27.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 21 IPGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 21 ~~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
++|..|..+|..+.++|..-|+|++++..|+
T Consensus 366 ~~gl~dvs~~p~l~~~L~~rG~se~di~ki~ 396 (417)
T 3b40_A 366 VDGWKDVSEIRNVTAELITRGYSDADIAKLW 396 (417)
T ss_dssp BBTBCSGGGHHHHHHHHHHHTCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4678999999999999999999999998774
No 72
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=24.88 E-value=98 Score=19.53 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=23.7
Q ss_pred HHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhhhc
Q psy2669 53 ITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 53 ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~ 101 (166)
+..+|.|||.=++ ..+..+|+=||++.....+.|.
T Consensus 17 v~~~i~~L~~~~~--------------~Ta~~IAkkLg~sK~~vNr~LY 51 (75)
T 1sfu_A 17 VKKEVLSLNTNDY--------------TTAISLSNRLKINKKKINQQLY 51 (75)
T ss_dssp HHHHHHTSCTTCE--------------ECHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCCCCcc--------------hHHHHHHHHHCCCHHHHHHHHH
Confidence 5566777763332 2356899999999877766664
No 73
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.80 E-value=83 Score=16.41 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHH
Q psy2669 30 FQLTDQAFDILGFTKEEKENV 50 (166)
Q Consensus 30 f~~~~~al~~lg~~~~e~~~i 50 (166)
+.+..+-|..+||+.++....
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~A 24 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQA 24 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 455567777789998665444
No 74
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=24.50 E-value=84 Score=21.71 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2669 30 FQLTDQAFDILGFTKEEKENVYKIT 54 (166)
Q Consensus 30 f~~~~~al~~lg~~~~e~~~i~~il 54 (166)
+.++..+|..+|+++.++..+|+.+
T Consensus 58 ~~El~~~l~~~g~~~~~~~~~~~~~ 82 (180)
T 3mse_B 58 HREIYTVLASVGIKKWDINRILQAL 82 (180)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3444567778899987777776653
No 75
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=24.46 E-value=61 Score=20.20 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.8
Q ss_pred cccCCchhHHHHHhhhCCCHHHHHhhhc
Q psy2669 74 AEPDGTEEGDRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 74 ~~v~~~~~l~~~a~LLgv~~~~L~~~L~ 101 (166)
|.++....|+.+|..-|+|++.|.+.|-
T Consensus 33 C~~a~~~tLeeA~~~hgiD~d~ll~eLn 60 (76)
T 2k53_A 33 CPSSMGESIEDACAVHGIDADKLVKELN 60 (76)
T ss_dssp SCCCCCSBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCccccccHHHHHHHcCCCHHHHHHHHH
Confidence 3445577899999999999999887774
No 76
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=24.23 E-value=34 Score=21.78 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhhhcc
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVK 102 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~ 102 (166)
.++......|++..+......|=-. .+.+++ . +...++.. +..++.+||++++.|...+..
T Consensus 34 ~lk~~R~~~glsq~elA~~lgvs~~--~is~~E-----~--G~~~p~~~-~~~l~~~l~~~~~~l~~~~~~ 94 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLG--TLRDWE-----Q--GRSEPDQP-ARAYLKIIAVDPEGTAAALRK 94 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHH--HHHHHH-----T--TSSCCCHH-HHHHHHHHHHCHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHH--HHHHHH-----c--CCCCCCHH-HHHHHHHHCcCHHHHHHHHHc
Confidence 4566677789997765544322100 111111 1 11122333 788999999999999887653
No 77
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=24.17 E-value=1.4e+02 Score=18.91 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHhh
Q psy2669 28 EEF-QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTN 99 (166)
Q Consensus 28 ~~f-~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~ 99 (166)
..| ..++......|++..+......|=- =.+++++ .+...++.+.+..+|..||++.+.|...
T Consensus 27 ~~ig~~lr~~R~~~gltq~elA~~~gis~--~~is~iE-------~G~~~ps~~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 27 SKVSFVIKKIRLEKGMTQEDLAYKSNLDR--TYISGIE-------RNSRNLTIKSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCH--HHHHHHH-------TTCSCCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCH--HHHHHHH-------CCCCCCCHHHHHHHHHHHCcCHHHHhcc
Confidence 344 3566777788999877655432210 0111221 1112345678999999999999988654
No 78
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=24.11 E-value=1.2e+02 Score=18.58 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=24.3
Q ss_pred hHHHHHhhhCCCHHHHHhhhccc-----eeeeCCeeE
Q psy2669 81 EGDRVSKLLGVDSQQLYTNLVKP-----RIKVGNEFV 112 (166)
Q Consensus 81 ~l~~~a~LLgv~~~~L~~~L~~~-----~~~~~~e~~ 112 (166)
.++.+|+.|||....+.+....+ .+.+|+...
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG~~~l 54 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQ 54 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHHCTTCSSEEEETTEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeCCEEE
Confidence 58899999999999998887653 345665444
No 79
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=23.92 E-value=45 Score=27.76 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy2669 22 PGMDDGEEFQLTDQAFDILGFTKEEKENVY 51 (166)
Q Consensus 22 ~~~dD~~~f~~~~~al~~lg~~~~e~~~i~ 51 (166)
+|..|..+|..+..+|..-|+|++++..|+
T Consensus 329 ~gl~dvs~~p~L~~~L~~rG~se~di~ki~ 358 (400)
T 3id7_A 329 DGLGDVSGYPNLIAELLDRGWSQSDLAKLT 358 (400)
T ss_dssp BTCSSTTCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 578899999999999999999999998873
No 80
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455, structural genomics, JOI for structural genomics, JCSG; HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Probab=23.55 E-value=1.1e+02 Score=19.65 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASV 57 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaI 57 (166)
.+..|++..|.+++|+.+++.+.+..
T Consensus 64 H~~~A~~~~G~t~eei~e~~~~~~~~ 89 (105)
T 3d7i_A 64 QMKSAMKELGITKEEIADVLRVVLLT 89 (105)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46667646799999999998887654
No 81
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=23.19 E-value=1e+02 Score=16.91 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Q psy2669 26 DGEEFQLTDQAFDILG--FTKEEKENVYKI 53 (166)
Q Consensus 26 D~~~f~~~~~al~~lg--~~~~e~~~i~~i 53 (166)
+..+|. .+|..+| +++++...+|+.
T Consensus 19 ~~~el~---~~l~~~~~~~~~~~~~~~~~~ 45 (67)
T 1tiz_A 19 SLDEFR---EVALAFSPYFTQEDIVKFFEE 45 (67)
T ss_dssp EHHHHH---HHHHHTCTTSCHHHHHHHHHH
T ss_pred cHHHHH---HHHHHhCCCCCHHHHHHHHHH
Confidence 455555 4555555 667777776654
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.89 E-value=67 Score=16.64 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=16.7
Q ss_pred HHHHHhhhCCCHHHHHhhhc
Q psy2669 82 GDRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 82 l~~~a~LLgv~~~~L~~~L~ 101 (166)
...+|+.|||+...+.+.+.
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHh
Confidence 56889999999998888764
No 83
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=22.81 E-value=1e+02 Score=20.93 Aligned_cols=42 Identities=12% Similarity=-0.011 Sum_probs=27.8
Q ss_pred HHHhhhCCCHHHHHhhhccceeeeCCeeEEecCChhHHHHhhhhhhHHHHHHHHHHHH
Q psy2669 84 RVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQQAFDILGFTKEEKENVYKITA 141 (166)
Q Consensus 84 ~~a~LLgv~~~~L~~~L~~~~~~~~~e~~~~~~~~~~A~~~rdalaK~lY~~LF~wiV 141 (166)
.+...||.+...|.+.|.++. |.+. .. .=-|.+|-|+++|+-
T Consensus 50 FA~~ILgrsQgtlSdlL~~Pk----------pW~~-----L~-~~GRe~yiRM~nWL~ 91 (111)
T 1wh8_A 50 FGESILGLTQGSVSDLLSRPK----------PWHK-----LS-LKGREPFVRMQLWLN 91 (111)
T ss_dssp HHHHTTCCCHHHHHHHHHSCC----------CTTT-----SC-HHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcCcHHHHHcCCC----------CHHH-----Hh-HhhhHHHHHHHHHhc
Confidence 445588888888888887664 1111 00 013889999999985
No 84
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=22.59 E-value=1.4e+02 Score=18.28 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=25.8
Q ss_pred CCcHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHH
Q psy2669 24 MDDGEEFQLTDQAFDI-L--GFTKEEKENVYKITAS 56 (166)
Q Consensus 24 ~dD~~~f~~~~~al~~-l--g~~~~e~~~i~~ilaa 56 (166)
.-+.+.|..+...|.. . .++++|+..|..-|+.
T Consensus 44 ~~~~~~W~~~v~~M~~~~g~~ls~~e~~~I~~YL~~ 79 (81)
T 2blf_B 44 GKGQAFWDAEVQKMIKVYHAPVDEADAKAIADYLAK 79 (81)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4578899999999983 3 4899999988776653
No 85
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=22.39 E-value=1.2e+02 Score=17.43 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 23 GMDDGEEFQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 23 ~~dD~~~f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
|.=+.++|..+...+. .++++++..+|+.
T Consensus 18 G~i~~~el~~~l~~~g--~~~~~~~~~~~~~ 46 (78)
T 1k9u_A 18 GKISLSELTDALRTLG--STSADEVQRMMAE 46 (78)
T ss_dssp SEECHHHHHHHHHHHH--TCCHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 3335677777777666 6888888777664
No 86
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=22.21 E-value=1.2e+02 Score=18.15 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Q psy2669 26 DGEEFQLTDQAFDILG--FTKEEKENVYKI 53 (166)
Q Consensus 26 D~~~f~~~~~al~~lg--~~~~e~~~i~~i 53 (166)
+..+|. .+|..+| ++++++..+|+.
T Consensus 27 ~~~el~---~~l~~~g~~~~~~~~~~l~~~ 53 (92)
T 2kn2_A 27 SASELR---HVMINLGEKLTDEEVEQMIKE 53 (92)
T ss_dssp CHHHHH---HHHHHTTCCCCHHHHHHHHHH
T ss_pred cHHHHH---HHHHHhCCCCCHHHHHHHHHH
Confidence 444444 4455555 567676666553
No 87
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.75 E-value=1.2e+02 Score=19.17 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q psy2669 30 FQLTDQAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 30 f~~~~~al~~lg~~~~e~~~i~~i 53 (166)
+-.....++.+|||=+|+..++..
T Consensus 5 rL~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 5 RLKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 445678899999999999888764
No 88
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.27 E-value=65 Score=18.05 Aligned_cols=21 Identities=5% Similarity=0.172 Sum_probs=17.5
Q ss_pred CCchhHHHHHhhhCCCHHHHH
Q psy2669 77 DGTEEGDRVSKLLGVDSQQLY 97 (166)
Q Consensus 77 ~~~~~l~~~a~LLgv~~~~L~ 97 (166)
.+.+.+..+|..||++.+.|.
T Consensus 41 ~~~~~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 41 PSLQLALKIAYYLNTPLEDIF 61 (66)
T ss_dssp CCHHHHHHHHHHTTSCHHHHE
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 356778999999999998775
No 89
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.14 E-value=74 Score=20.99 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
..++......|++..+......|= -=.+++++ .+...++.+.+..+|..|||+.+.|..
T Consensus 15 ~~lk~~R~~~glsq~~lA~~~gis--~~~is~~E-------~g~~~p~~~~l~~ia~~l~v~~~~l~~ 73 (126)
T 3ivp_A 15 LAIKEARKKQGLTREQVGAMIEID--PRYLTNIE-------NKGQHPSLQVLYDLVSLLNVSVDEFFL 73 (126)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCC--HHHHHHHH-------HSCCCCCHHHHHHHHHHHTCCSHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcC--HHHHHHHH-------CCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence 456667778899987655443210 01112221 111235678899999999999998764
No 90
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=20.99 E-value=1.3e+02 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=25.4
Q ss_pred CCCCCCc-HHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy2669 20 TIPGMDD-GEEFQLTDQAFDILGFTKEEKENVYK 52 (166)
Q Consensus 20 ~~~~~dD-~~~f~~~~~al~~lg~~~~e~~~i~~ 52 (166)
..+|+.| ..-|+..+.+|+.+.++++++..|..
T Consensus 162 ~~~~~~~~~~~~~~fr~~Ld~~~~~~~~~~~ii~ 195 (215)
T 1wzd_A 162 HFEGIAKLKVYKDEYREKLNNLELSDEQREHLLK 195 (215)
T ss_dssp CCTTCSCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ecCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3466556 66678899999999999998877644
No 91
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=20.86 E-value=99 Score=21.14 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=6.9
Q ss_pred HHHHHcCCCHHHHHHHH
Q psy2669 35 QAFDILGFTKEEKENVY 51 (166)
Q Consensus 35 ~al~~lg~~~~e~~~i~ 51 (166)
..|...|++.++...||
T Consensus 56 ~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 56 NFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp HHHGGGCCCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 33333444444433333
No 92
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.75 E-value=67 Score=18.00 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcCCCHHH
Q psy2669 27 GEEFQLTDQAFDILGFTKEE 46 (166)
Q Consensus 27 ~~~f~~~~~al~~lg~~~~e 46 (166)
.+.|+.-++.|..|||++++
T Consensus 4 ~~~~~~~i~~L~~MGF~d~~ 23 (46)
T 2bwb_A 4 EERYEHQLRQLNDMGFFDFD 23 (46)
T ss_dssp HHHTHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHcCCCcHH
Confidence 46788889999999997644
No 93
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.66 E-value=67 Score=18.83 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCccccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 31 QLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 31 ~~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
..++..+...|++..+......+=-. .+.+++ . +....++.+.+..+|..||++.+.|..
T Consensus 10 ~~l~~~r~~~g~sq~~lA~~~gis~~--~i~~~e-----~-g~~~~~~~~~l~~ia~~l~~~~~~l~~ 69 (78)
T 3b7h_A 10 EHLMELITQQNLTINRVATLAGLNQS--TVNAMF-----E-GRSKRPTITTIRKVCGTLGISVHDFFD 69 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHH--HHHHHH-----C-TTCCCCCHHHHHHHHHHHTCCHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHH--HHHHHH-----c-CCCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 35667777889997665544321100 011111 0 111134567899999999999988763
No 94
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.65 E-value=66 Score=19.39 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEeecCCCCc-cccCCchhHHHHHhhhCCCHHHHHh
Q psy2669 32 LTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQ-AEPDGTEEGDRVSKLLGVDSQQLYT 98 (166)
Q Consensus 32 ~~~~al~~lg~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~-~~v~~~~~l~~~a~LLgv~~~~L~~ 98 (166)
.++..-+..|++..+......|=-. .+.+++ .. ....+.+.+..+|..|||+.+.|..
T Consensus 14 ~ik~~R~~~gltq~elA~~~gis~~--~is~~E-------~G~~~~p~~~~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 14 RIKQYRKEKGYSLSELAEKAGVAKS--YLSSIE-------RNLQTNPSIQFLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHH--HHHHHH-------TTSCCCCBHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHH--HHHHHH-------cCCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence 4555566678887665544322100 111111 11 2334567899999999999988764
No 95
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.63 E-value=1.2e+02 Score=16.76 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2669 30 FQLTDQAFDILGFTKEEKENVYKIT 54 (166)
Q Consensus 30 f~~~~~al~~lg~~~~e~~~i~~il 54 (166)
.+.-.+|++.-||+++|...+-.-|
T Consensus 5 lkselqalkkegfspeelaalesel 29 (48)
T 1g6u_A 5 LKSELQALKKEGFSPEELAALESEL 29 (48)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4556789999999999877664443
No 96
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=20.51 E-value=78 Score=18.51 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=13.5
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Q psy2669 31 QLTDQAFDILG---FTKEEKENVYKI 53 (166)
Q Consensus 31 ~~~~~al~~lg---~~~~e~~~i~~i 53 (166)
.++..+|..+| ++++++..+|+.
T Consensus 28 ~el~~~l~~~g~~~~~~~~~~~~~~~ 53 (81)
T 1c7v_A 28 DEFKFIMQKVGEEPLTDAEVEEAMKE 53 (81)
T ss_dssp HHHHHHSSTTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 33445566666 667676666554
No 97
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=20.48 E-value=1.2e+02 Score=20.34 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=10.2
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q psy2669 35 QAFDILGFTKEEKENVYKI 53 (166)
Q Consensus 35 ~al~~lg~~~~e~~~i~~i 53 (166)
.+|..+|++++++..+|+.
T Consensus 126 ~~l~~~g~~~~~~~~~~~~ 144 (176)
T 1nya_A 126 AWLTALGMSKAEAAEAFNQ 144 (176)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3444445666666655554
No 98
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=20.33 E-value=68 Score=21.01 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=16.6
Q ss_pred HHHHHhhhCCCHHHHHhhhc
Q psy2669 82 GDRVSKLLGVDSQQLYTNLV 101 (166)
Q Consensus 82 l~~~a~LLgv~~~~L~~~L~ 101 (166)
...+|++|||+...|.+.|-
T Consensus 74 ~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 74 QTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 45899999999999987663
No 99
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=20.04 E-value=48 Score=20.12 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhh
Q psy2669 46 EKENVYKITASVMHM 60 (166)
Q Consensus 46 e~~~i~~ilaaILhL 60 (166)
+...+.+++++||++
T Consensus 22 ~~~~m~kaI~avL~F 36 (60)
T 1upt_B 22 ETKTMAKVITTVLKF 36 (60)
T ss_dssp SHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhC
Confidence 455566666666654
Done!