RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2669
(166 letters)
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 173 bits (441), Expect = 3e-51
Identities = 67/120 (55%), Positives = 90/120 (75%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
M ++TN+ YDY +SQG+ T+ +DD EE TD AFD+LGFT EEK ++YK+T ++MH
Sbjct: 300 MLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHF 359
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G MKFK + REEQAEPDGTEE D+ + L+G++S L L PR+KVGNE+VT+G+NV Q
Sbjct: 360 GNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQ 419
Score = 77.7 bits (192), Expect = 1e-17
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
AFD+LGFT EEK ++YK+T ++MH G MKFK + REEQAEPDGTE
Sbjct: 333 DNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTE 379
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 170 bits (434), Expect = 3e-50
Identities = 65/120 (54%), Positives = 93/120 (77%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
+ ++T D Y ++QG +T+ +DD EEF+L D+AFDILGFTKEEK++++K TAS++HM
Sbjct: 299 VMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHM 358
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G MKFKQR REEQAE DGT E ++V+ L G+++ L L+KP++KVG E VT+G+N+NQ
Sbjct: 359 GEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQ 418
Score = 77.0 bits (190), Expect = 3e-17
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+AFDILGFTKEEK++++K TAS++HMG MKFKQR REEQAE DGT
Sbjct: 332 DEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTA 378
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 153 bits (390), Expect = 3e-44
Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
L N Y +Y G I G+DD +E T QA +LG + + +++I A ++H+
Sbjct: 276 TLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHL 335
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G ++F R + A P + L+GVD +++ L ++ E + +
Sbjct: 336 GNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLH 395
Score = 74.6 bits (184), Expect = 2e-16
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+QA +LG + + +++I A ++H+G ++F R + A P +
Sbjct: 309 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHD 355
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 148 bits (377), Expect = 2e-42
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 7 DIYDYYNVSQGK-ITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKF 65
+ ++Q + I G+ D EEF++T QA DI+GF++EE+ +++KI A ++H+G +KF
Sbjct: 300 GPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKF 359
Query: 66 KQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
++ E D T + S + GV+ L L++PRI G + V Q NV +
Sbjct: 360 EKGAGEGAVLKDKT-ALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEK 413
Score = 73.0 bits (180), Expect = 7e-16
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 328 RQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTA 374
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 149 bits (377), Expect = 2e-42
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 6 NDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKF 65
Y ++ G + + E FQ T ++ +LGF+ EE ++ ++ ++V+ G +
Sbjct: 277 EPCSHYRFLTNGPSSS-PGQERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIAL 335
Query: 66 KQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
K+ +QA ++ +LLG+ L+ PRIKVG ++V + + Q
Sbjct: 336 KRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQ 390
Score = 73.5 bits (181), Expect = 4e-16
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
++ +LGF+ EE ++ ++ ++V+ G + K+ +QA
Sbjct: 304 LESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNT 350
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 148 bits (376), Expect = 3e-42
Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
L N Y +Y G I G+DD +E T QA +LG + + +++I A ++H+
Sbjct: 276 TLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHL 335
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G ++F R + A P + L+GVD +++ L ++ E + +
Sbjct: 336 GNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLH 395
Score = 72.1 bits (177), Expect = 1e-15
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+QA +LG + + +++I A ++H+G ++F R + A P +
Sbjct: 309 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHD 355
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 148 bits (375), Expect = 3e-42
Identities = 36/120 (30%), Positives = 64/120 (53%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHM 60
+L +Y +S G + IP D E FQ T +A I+GFT+EE+ ++ ++ +SV+ +
Sbjct: 302 NDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQL 361
Query: 61 GGMKFKQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
G + FK+ +QA +V L+G++ +++ PRIKVG + V + + Q
Sbjct: 362 GNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQ 421
Score = 65.2 bits (159), Expect = 3e-13
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+A I+GFT+EE+ ++ ++ +SV+ +G + FK+ +QA
Sbjct: 335 LEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNT 381
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 145 bits (367), Expect = 5e-41
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 7 DIYDYYNVSQGK-ITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKF 65
+ ++Q + I G+ D +EF++T QA DI+GF++EE+ +++KI A ++H+G +KF
Sbjct: 300 GPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKF 359
Query: 66 KQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVNQ 120
++ E D T + S + GV+ L L++PRI G + V Q NV +
Sbjct: 360 EKGAGEGAVLKDKT-ALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEK 413
Score = 71.6 bits (176), Expect = 2e-15
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREEQAEPDGTE 166
+QA DI+GF++EE+ +++KI A ++H+G +KF++ E D T
Sbjct: 328 RQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTA 374
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 138 bits (350), Expect = 8e-39
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 1 MCMLTNDIYDYYNVSQGK-ITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMH 59
LT + Y + + + +DD EF++ +A + LG + ++ ++++I A+++H
Sbjct: 216 ELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILH 275
Query: 60 MGGMKF----KQRGREEQAEPDGTEEGDRVSKLLGVDSQQLYTNLVKPRIKVG----NEF 111
+G + F +QR + T+ + L D Q L L I G
Sbjct: 276 IGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSV 335
Query: 112 VTQGRNVNQ 120
++ + NQ
Sbjct: 336 ISVPMDCNQ 344
Score = 63.0 bits (154), Expect = 2e-12
Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKF----KQRGREEQAEPDGTE 166
+A + LG + ++ ++++I A+++H+G + F +QR + T+
Sbjct: 250 VKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTK 300
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 125 bits (316), Expect = 4e-34
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 4 LTNDIYDYYNVSQGKITIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGM 63
+ + + G + P +DD +F A +G EEK +++++ A V+H+G +
Sbjct: 287 ILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNI 346
Query: 64 KFKQRGREE---QAEPDGTEEGDRVSKLLGVDSQQLYTNLVK-----PRIKVGNEFVTQG 115
F++ G + T+ + ++LLG+D L +L +
Sbjct: 347 DFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVP 406
Query: 116 RNVNQ 120
V Q
Sbjct: 407 LKVEQ 411
Score = 64.6 bits (158), Expect = 6e-13
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 120 QQAFDILGFTKEEKENVYKITASVMHMGGMKFKQRGREE---QAEPDGTE 166
A +G EEK +++++ A V+H+G + F++ G + T+
Sbjct: 317 CTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQ 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 3e-04
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 64/203 (31%)
Query: 2 CMLTNDIYDYYNVSQGKITIPGMDDGE----EF-Q----LTDQA-FDIL---GFTKEEK- 47
+ T I+ N T + G +F Q L ++A F+ L G +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 48 -------ENVYKITASVMHMGGMKF-------KQRGREEQAEPDGTEEG----------- 82
E Y A M RG Q E G
Sbjct: 1759 FAGHSLGE--Y--AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 83 DRVSKLLGVDSQQLYTNLVKPRIKVGNEFVTQGRNVN---QQ--------AFD----ILG 127
RV+ ++ Q +V+ K V + N N QQ A D +L
Sbjct: 1815 GRVAASFSQEALQ---YVVERVGKRTGWLV-EIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
Query: 128 FTKEEKENVYKITASVMHMGGMK 150
F K +K ++ ++ S + + ++
Sbjct: 1871 FIKLQKIDIIELQKS-LSLEEVE 1892
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.8
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 14/32 (43%)
Query: 46 EKENVYKITASVMHMGGMKFKQRGREEQAEPD 77
EK+ + K+ AS +K D
Sbjct: 18 EKQALKKLQAS------LKL--------YADD 35
Score = 27.2 bits (59), Expect = 1.8
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 14/32 (43%)
Query: 132 EKENVYKITASVMHMGGMKFKQRGREEQAEPD 163
EK+ + K+ AS +K D
Sbjct: 18 EKQALKKLQAS------LKL--------YADD 35
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 27.7 bits (62), Expect = 2.3
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTD---QAFDILGFTKEEKENVYKITASV 57
+ L + D S G I +PG+ D LT+ + + EE N ++ +
Sbjct: 254 LVALLGSLVD----SSGHILVPGIYDEVV-PLTEEEINTYKAIHLDLEEYRNSSRVEKFL 308
Query: 58 MHMGGMKFKQRGRE 71
R
Sbjct: 309 FDTKEEILMHLWRY 322
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 26.5 bits (59), Expect = 5.3
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 1 MCMLTNDIYDYYNVSQGKITIPGMDDGEEFQLTD---QAFDILGFTKEEKENVYKITASV 57
+ L + D +GKI IPG++D +TD +D + F EE +
Sbjct: 247 LISLMGCLVD----KKGKILIPGINDAVA-PVTDEEHALYDHIDFDMEEFAKDVGAETLL 301
Query: 58 MHMGGMKFKQRGRE 71
R R
Sbjct: 302 HSCKKDILMHRWRY 315
>2r78_A Sensor protein; sensory box sensor histidine kinase/response
regulator, structural genomics, PSI, MCSG; 1.60A
{Geobacter sulfurreducens pca}
Length = 117
Score = 25.6 bits (57), Expect = 5.4
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 114 QGR--NVNQQAFDILGFTKEE 132
+G +VN +G+T++E
Sbjct: 30 EGHYLDVNPAICSAIGYTRDE 50
>1u0s_A Chemotaxis protein CHEA; protein-protein complex, alpha/beta
sandwich, signaling complex, transient interaction;
1.90A {Thermotoga maritima} SCOP: d.58.24.1
Length = 86
Score = 24.7 bits (54), Expect = 6.7
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 20 TIPGMDDGEEFQLTDQAFDILGFTKEEKENVYKITASV 57
TIP +++ EE + + ++ + + E + + +S+
Sbjct: 39 TIPSVEEIEEEKF-ENEVELFVISPVDLEKLSEALSSI 75
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo
protein, MCSG, structural GENO PSI-2, protein structure
initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Length = 481
Score = 26.1 bits (58), Expect = 7.5
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 15 SQGKITIPGMDDG------EEFQLTDQAFDILGFTKEEKENVYKITASVMHMGGMKFKQR 68
+ G+I + G+ + E L + EE +Y + ++ M F +R
Sbjct: 266 ADGRILVEGLYEEVQEPNEREMALLET---YGQRNPEEVSRIYGLELPLLQEERMAFLKR 322
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 25.2 bits (56), Expect = 8.0
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 118 VNQQAFDILGFTKEE 132
VNQ+ LG+ + E
Sbjct: 42 VNQRFCAELGYDESE 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.134 0.374
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,503,022
Number of extensions: 140086
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 39
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)